Citrus Sinensis ID: 048389

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MLGALVRRTAASVLKANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM
cHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHccccccccccHHHHcccccccccccccEEEEEEEEccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEEccccEEEEccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHccccccccHHccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHcccHHHHHHHcccccEEEEEccccccccccccccccccccEEEEccccEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccc
cHHHHHHHHcHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHccccccHEEHHHHHHHHccccccccccEEEEEEEEccEEEEEEEEccccHHHcEcccHHHHHHHHHHHHHHHcccEEEEEccccEcHHHHHHHccccccccHHHHHHHHHHHccccEEEEEccEEEcHHHHcccccccEEEEEcccEEEEcccHHHHHccccEEcHHHcccccEccccccHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHcHHHHccccccccccHHHHHHHHcHHHcEEEEcccccccEEEEEEEEccEEEEEEEEHHcEcHHHHHHHHHHHHHHHHccccEEEEEEEccEcccHHHHHccHHHHHHHHHHHHHHccccEEEEEEEEEEHHHHHccccHHHcccEEEEccccEEEcccHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEc
MLGALVRRTAASVLKANSIRTRALHLsvlpdavdrnseafVRNSQVMQGLVSELQSHIQKVLggggesavkrnrsrnkllpreridrltdpgssflELSQLAGHELYEETlqsggiitgigpvhGRLCmfvandptvkggtyfpitIKKHLRAQEIAAQCklpciylvdsggaylpkqaevfpdkenfgrifynqaimsaEGIPQIALVLGsctaggayipamadesvmvkgngtiflagpplvkaatgeeisaedlggaavhcktsgvsdyfaqdelhglSLGRNIIKNLHMagrqgeingfqninpeykeplydvkelysiapadlkqsfdiRSVIARIVDGSEFDEFKKLYGTTLVTGFAkifgqpvgiignngilfhesalkgAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCakvpkvtiivggsfgagnyamcgrayspnfmflwpnariSVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYstarlwddgiidpadtRKIIGFCISAalnrpvedtkygvfrm
MLGALVRRTAASvlkansirtralhlsvlpdavDRNSEAFVRNSQVMQGLVSELQSHIQKvlggggesavkrnrsrnkllpreridrltdpgsSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPadlkqsfdiRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSqvekdkkkkqgiewtkqeeeMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCisaalnrpvedtkygvfrm
MLGALVRRTAASVLKANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM
***********SVLKANSIRTRALHLSVLPDAVD****AFVR***VMQGLV*******************************************FLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVL*********************MFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYG****
*******************************AVDRNSEAFVRNSQVMQGLVSELQS********************NKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAG***************KEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQV********************KAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALN**VEDTKYGVFRM
MLGALVRRTAASVLKANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQK**************SRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGV*************IEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM
MLGALVRRTAASVLKANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQ*IEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM
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MLGALVRRTAASVLKANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
Q9LDD8587 Methylcrotonoyl-CoA carbo yes no 0.962 0.928 0.816 0.0
Q9V9A7578 Probable methylcrotonoyl- yes no 0.980 0.960 0.627 0.0
Q5XIT9563 Methylcrotonoyl-CoA carbo yes no 0.987 0.992 0.615 0.0
Q3ULD5563 Methylcrotonoyl-CoA carbo yes no 0.987 0.992 0.612 0.0
P34385608 Probable methylcrotonoyl- yes no 0.948 0.883 0.610 0.0
Q9HCC0563 Methylcrotonoyl-CoA carbo yes no 0.987 0.992 0.601 0.0
Q8T2J9588 Methylcrotonoyl-CoA carbo yes no 0.978 0.942 0.599 0.0
O31825511 Uncharacterized carboxyla yes no 0.830 0.919 0.378 5e-87
Q8GBW6611 Methylmalonyl-CoA carboxy N/A no 0.851 0.788 0.320 1e-69
P54541507 Putative propionyl-CoA ca no no 0.805 0.899 0.336 3e-64
>sp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1 Back     alignment and function desciption
 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/545 (81%), Positives = 500/545 (91%)

Query: 22  RALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLP 81
           +   + +LPD VDRNSEAF  NS  M+G++SEL+SHI+KVL GGGE AVKRNRSRNKLLP
Sbjct: 43  KGFCVGILPDGVDRNSEAFSSNSIAMEGILSELRSHIKKVLAGGGEEAVKRNRSRNKLLP 102

Query: 82  RERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGT 141
           RERIDRL DPGSSFLELSQLAGHELYEE L SGGIITGIGP+HGR+CMF+ANDPTVKGGT
Sbjct: 103 RERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGIITGIGPIHGRICMFMANDPTVKGGT 162

Query: 142 YFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAE 201
           Y+PITIKKHLRAQEIAA+C+LPCIYLVDSGGAYLPKQAEVFPDKENFGR+FYN+++MS++
Sbjct: 163 YYPITIKKHLRAQEIAARCRLPCIYLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSD 222

Query: 202 GIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAA 261
           GIPQIA+VLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEE+SAEDLGGA 
Sbjct: 223 GIPQIAIVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAT 282

Query: 262 VHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELY 321
           VHC  SGVSDYFAQDELHGL++GRNI+KNLHMA +QG    F + N  YKEPLYD+ EL 
Sbjct: 283 VHCTVSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELR 342

Query: 322 SIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFH 381
           SIAP D KQ FD+RS+IARIVDGSEFDEFKK YGTTLVTGFA+I+GQ VGIIGNNGILF+
Sbjct: 343 SIAPVDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFN 402

Query: 382 ESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVT 441
           ESALKGAHFIELC+QRKIPLVFLQNITGFMVGSR+EANGIAKAGAKMVMAVSCAKVPK+T
Sbjct: 403 ESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKIT 462

Query: 442 IIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWT 501
           II G SFGAGNYAMCGRAYSP+FMF+WPNARI +MGGAQAAGVL+Q+E+  KK+QGI+WT
Sbjct: 463 IITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWT 522

Query: 502 KQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKY 561
           ++EEE FK K V+AYE+E N YYSTARLWDDG+IDP DTRK++G C+SAALNRP+EDT++
Sbjct: 523 EEEEEAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPLEDTRF 582

Query: 562 GVFRM 566
           GVFRM
Sbjct: 583 GVFRM 587

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 4
>sp|Q9V9A7|MCCB_DROME Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Drosophila melanogaster GN=l(2)04524 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Mccc2 PE=2 SV=1 Back     alignment and function description
>sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Mccc2 PE=2 SV=1 Back     alignment and function description
>sp|P34385|MCCB_CAEEL Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Caenorhabditis elegans GN=F02A9.4 PE=2 SV=1 Back     alignment and function description
>sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1 Back     alignment and function description
>sp|Q8T2J9|MCCB_DICDI Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Dictyostelium discoideum GN=mccb PE=3 SV=2 Back     alignment and function description
>sp|O31825|YNGE_BACSU Uncharacterized carboxylase YngE OS=Bacillus subtilis (strain 168) GN=yngE PE=3 SV=2 Back     alignment and function description
>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit OS=Propionibacterium freudenreichii subsp. shermanii PE=1 SV=3 Back     alignment and function description
>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis (strain 168) GN=yqjD PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
224103609573 predicted protein [Populus trichocarpa] 0.968 0.956 0.872 0.0
147795294570 hypothetical protein VITISV_001775 [Viti 1.0 0.992 0.840 0.0
225428826570 PREDICTED: methylcrotonoyl-CoA carboxyla 1.0 0.992 0.840 0.0
297741267576 unnamed protein product [Vitis vinifera] 1.0 0.982 0.840 0.0
449438400577 PREDICTED: methylcrotonoyl-CoA carboxyla 0.966 0.948 0.851 0.0
449495604581 PREDICTED: methylcrotonoyl-CoA carboxyla 0.966 0.941 0.843 0.0
356521516556 PREDICTED: methylcrotonoyl-CoA carboxyla 0.982 1.0 0.810 0.0
356500023558 PREDICTED: methylcrotonoyl-CoA carboxyla 0.925 0.939 0.864 0.0
357475341552 3-methylcrotonyl-CoA carboxylase [Medica 0.975 1.0 0.823 0.0
388496726552 unknown [Medicago truncatula] 0.975 1.0 0.821 0.0
>gi|224103609|ref|XP_002313120.1| predicted protein [Populus trichocarpa] gi|222849528|gb|EEE87075.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/548 (87%), Positives = 515/548 (93%)

Query: 19  IRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNK 78
           ++ R   L VLPD V RNSEAF +NS+ M+GL+S+LQSHI KVL GGGE AVKRNR RNK
Sbjct: 26  LQKRGFCLGVLPDGVGRNSEAFAQNSKAMEGLISQLQSHINKVLAGGGEEAVKRNRKRNK 85

Query: 79  LLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVK 138
           LLPRERID+L DPGSSFLELSQLAGHELY ETL SGGIITGIGPVHGRLCMFVANDPTVK
Sbjct: 86  LLPRERIDKLIDPGSSFLELSQLAGHELYGETLPSGGIITGIGPVHGRLCMFVANDPTVK 145

Query: 139 GGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIM 198
           GGTY+PIT+KKHLRAQEIAAQCKLPCIYLVDSGGA+LPKQAEVFPDK+NFGRIFYNQA+M
Sbjct: 146 GGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDKDNFGRIFYNQAVM 205

Query: 199 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLG 258
           SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGN TIFLAGPPLVKAATGEE+SAEDLG
Sbjct: 206 SAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNATIFLAGPPLVKAATGEEVSAEDLG 265

Query: 259 GAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVK 318
           GA+VHCKTSGVSDYFAQDELHGL+LGRNIIKNLHMAG+QG +NG  N+NPEYKEPLYDVK
Sbjct: 266 GASVHCKTSGVSDYFAQDELHGLALGRNIIKNLHMAGKQGVMNGLHNLNPEYKEPLYDVK 325

Query: 319 ELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGI 378
           EL SIAP D KQ+FDIRSVIARIVDGSEFDEFKK YGTTL+TGFA+IFGQPVGI+GNNGI
Sbjct: 326 ELRSIAPIDHKQAFDIRSVIARIVDGSEFDEFKKQYGTTLITGFARIFGQPVGILGNNGI 385

Query: 379 LFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVP 438
           LF+ESALKGAHFIELCTQR IPLVFLQNITGFMVGSRSEANGIAK+GAKMVMAVSCAKVP
Sbjct: 386 LFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVP 445

Query: 439 KVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGI 498
           KVTI+VGGSFGAGNYAMCGRAYSPNF+FLWPNA+ISVMGGAQAA VLSQ+E   KKKQGI
Sbjct: 446 KVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNAKISVMGGAQAASVLSQIETANKKKQGI 505

Query: 499 EWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVED 558
           +WT++E+E FK+K+ EAYE+EGN YYSTARLWDDGIIDPADTRKIIGFCISA+LNRP ED
Sbjct: 506 QWTEEEQENFKSKITEAYEREGNCYYSTARLWDDGIIDPADTRKIIGFCISASLNRPSED 565

Query: 559 TKYGVFRM 566
           TKYGVFRM
Sbjct: 566 TKYGVFRM 573

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147795294|emb|CAN64992.1| hypothetical protein VITISV_001775 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428826|ref|XP_002282267.1| PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741267|emb|CBI32398.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438400|ref|XP_004136976.1| PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495604|ref|XP_004159892.1| PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356521516|ref|XP_003529401.1| PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356500023|ref|XP_003518834.1| PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|357475341|ref|XP_003607956.1| 3-methylcrotonyl-CoA carboxylase [Medicago truncatula] gi|355509011|gb|AES90153.1| 3-methylcrotonyl-CoA carboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388496726|gb|AFK36429.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
TAIR|locus:2124256587 MCCB "AT4G34030" [Arabidopsis 0.955 0.921 0.822 2.7e-249
FB|FBgn0042083578 CG3267 [Drosophila melanogaste 0.978 0.958 0.631 4.6e-192
RGD|1310279563 Mccc2 "methylcrotonoyl-CoA car 0.987 0.992 0.615 3.9e-186
WB|WBGene00008514608 F02A9.4b [Caenorhabditis elega 0.948 0.883 0.610 1.7e-185
UNIPROTKB|E1BPP6565 LOC783065 "Uncharacterized pro 0.984 0.985 0.604 3.5e-185
MGI|MGI:1925288563 Mccc2 "methylcrotonoyl-Coenzym 0.987 0.992 0.612 9.4e-185
UNIPROTKB|Q9HCC0563 MCCC2 "Methylcrotonoyl-CoA car 0.984 0.989 0.603 3.2e-184
UNIPROTKB|Q485C1535 mccB "Methylcrotonyl CoA carbo 0.932 0.986 0.629 5.2e-184
TIGR_CMR|CPS_1602535 CPS_1602 "methylcrotonyl CoA c 0.932 0.986 0.629 5.2e-184
ZFIN|ZDB-GENE-040426-2493566 mccc2 "methylcrotonoyl-Coenzym 0.931 0.931 0.631 7.6e-183
TAIR|locus:2124256 MCCB "AT4G34030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2401 (850.3 bits), Expect = 2.7e-249, P = 2.7e-249
 Identities = 445/541 (82%), Positives = 499/541 (92%)

Query:    26 LSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERI 85
             + +LPD VDRNSEAF  NS  M+G++SEL+SHI+KVL GGGE AVKRNRSRNKLLPRERI
Sbjct:    47 VGILPDGVDRNSEAFSSNSIAMEGILSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERI 106

Query:    86 DRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPI 145
             DRL DPGSSFLELSQLAGHELYEE L SGGIITGIGP+HGR+CMF+ANDPTVKGGTY+PI
Sbjct:   107 DRLLDPGSSFLELSQLAGHELYEEPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPI 166

Query:   146 TIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAEGIPQ 205
             TIKKHLRAQEIAA+C+LPCIYLVDSGGAYLPKQAEVFPDKENFGR+FYN+++MS++GIPQ
Sbjct:   167 TIKKHLRAQEIAARCRLPCIYLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQ 226

Query:   206 IALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCK 265
             IA+VLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEE+SAEDLGGA VHC 
Sbjct:   227 IAIVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCT 286

Query:   266 TSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAP 325
              SGVSDYFAQDELHGL++GRNI+KNLHMA +QG    F + N  YKEPLYD+ EL SIAP
Sbjct:   287 VSGVSDYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAP 346

Query:   326 ADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESAL 385
              D KQ FD+RS+IARIVDGSEFDEFKK YGTTLVTGFA+I+GQ VGIIGNNGILF+ESAL
Sbjct:   347 VDHKQQFDVRSIIARIVDGSEFDEFKKQYGTTLVTGFARIYGQTVGIIGNNGILFNESAL 406

Query:   386 KGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVG 445
             KGAHFIELC+QRKIPLVFLQNITGFMVGSR+EANGIAKAGAKMVMAVSCAKVPK+TII G
Sbjct:   407 KGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITG 466

Query:   446 GSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEE 505
              SFGAGNYAMCGRAYSP+FMF+WPNARI +MGGAQAAGVL+Q+E+  KK+QGI+WT++EE
Sbjct:   467 ASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEE 526

Query:   506 EMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFR 565
             E FK K V+AYE+E N YYSTARLWDDG+IDP DTRK++G C+SAALNRP+EDT++GVFR
Sbjct:   527 EAFKKKTVDAYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNRPLEDTRFGVFR 586

Query:   566 M 566
             M
Sbjct:   587 M 587
GO:0004075 "biotin carboxylase activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0016874 "ligase activity" evidence=IEA
GO:0006552 "leucine catabolic process" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0050897 "cobalt ion binding" evidence=IDA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
FB|FBgn0042083 CG3267 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1310279 Mccc2 "methylcrotonoyl-CoA carboxylase 2 (beta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00008514 F02A9.4b [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPP6 LOC783065 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1925288 Mccc2 "methylcrotonoyl-Coenzyme A carboxylase 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCC0 MCCC2 "Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q485C1 mccB "Methylcrotonyl CoA carboxylase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1602 CPS_1602 "methylcrotonyl CoA carboxylase, beta subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2493 mccc2 "methylcrotonoyl-Coenzyme A carboxylase 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53002PCCB_MYCLE6, ., 4, ., 1, ., 30.30620.87270.8998yesno
Q5XIT9MCCB_RAT6, ., 4, ., 1, ., 40.61570.98760.9928yesno
Q8T2J9MCCB_DICDI6, ., 4, ., 1, ., 40.59920.97870.9421yesno
Q9LDD8MCCB_ARATH6, ., 4, ., 1, ., 40.81650.96280.9284yesno
Q9V9A7MCCB_DROME6, ., 4, ., 1, ., 40.62710.98050.9602yesno
Q3ULD5MCCB_MOUSE6, ., 4, ., 1, ., 40.61220.98760.9928yesno
P34385MCCB_CAEEL6, ., 4, ., 1, ., 40.61020.94870.8832yesno
Q9HCC0MCCB_HUMAN6, ., 4, ., 1, ., 40.60100.98760.9928yesno
O31825YNGE_BACSU6, ., 4, ., 1, ., -0.37820.83030.9197yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.4.1.40.979
3rd Layer6.4.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00090655
3-methylcrotonyl-CoA carboxylase (EC-6.4.1.4) (573 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IX.4830.1
isovaleryl-CoA dehydrogenase (EC-1.3.99.12) (388 aa)
• •• •• 0.992
eugene3.00051206
hypothetical protein (760 aa)
••••••• 0.986
estExt_fgenesh4_pg.C_LG_III0605
enoyl-CoA hydratase (229 aa)
•    •• 0.948
fgenesh4_pm.C_scaffold_29000039
enoyl-CoA hydratase (226 aa)
•    •• 0.946
estExt_fgenesh4_pg.C_LG_VIII0916
enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)
•    •• 0.928
grail3.0006050201
enoyl-CoA hydratase (EC-4.2.1.17) (265 aa)
•    •• 0.927
gw1.VI.2896.1
hydroxymethylglutaryl-CoA lyase (EC-4.1.3.4) (293 aa)
• •   • 0.922
eugene3.24780001
Predicted protein (275 aa)
•     • 0.919
grail3.0164004802
hypothetical protein (526 aa)
•• •••• 0.904
estExt_fgenesh4_pm.C_LG_VI0248
hypothetical protein (528 aa)
•• •••• 0.903

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
PLN02820569 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxyla 0.0
COG4799526 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyl 0.0
pfam01039487 pfam01039, Carboxyl_trans, Carboxyl transferase do 0.0
TIGR01117512 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase a 1e-101
TIGR00513316 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl 8e-06
COG0825317 COG0825, AccA, Acetyl-CoA carboxylase alpha subuni 3e-05
PLN03230431 PLN03230, PLN03230, acetyl-coenzyme A carboxylase 2e-04
PLN03229 762 PLN03229, PLN03229, acetyl-coenzyme A carboxylase 6e-04
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information 
 Score = 1090 bits (2820), Expect = 0.0
 Identities = 449/565 (79%), Positives = 502/565 (88%), Gaps = 3/565 (0%)

Query: 5   LVRRTAASVLKANSIR---TRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKV 61
             R   +S   + S      R+  L VLPD VDRNS+AF  NS+ M+GL+SEL+SH+ KV
Sbjct: 5   AFRPRTSSTPASASFFRLGKRSFCLGVLPDGVDRNSDAFSANSKAMEGLLSELRSHVAKV 64

Query: 62  LGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIG 121
             GGG  AVKR+RSRNKLLPRERIDRL DPGS FLELSQLAGHELY E L SGGI+TGIG
Sbjct: 65  RAGGGPEAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIG 124

Query: 122 PVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEV 181
           PVHGRLCMFVANDPTVKGGTY+PIT+KKHLRAQEIAAQC+LPCIYLVDSGGA LP+QAEV
Sbjct: 125 PVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEV 184

Query: 182 FPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGP 241
           FPD+++FGRIFYNQA MS+ GIPQIALVLGSCTAGGAY+PAMADESV+VKGNGTIFLAGP
Sbjct: 185 FPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLAGP 244

Query: 242 PLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEIN 301
           PLVKAATGEE+SAEDLGGA VHCK SGVSD+FAQDELH L++GRNI+KNLH+A +QG  N
Sbjct: 245 PLVKAATGEEVSAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLHLAAKQGMEN 304

Query: 302 GFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTG 361
              + NPEYKEPLYDVKEL  I PAD KQSFD+RSVIARIVDGSEFDEFKK YGTTLVTG
Sbjct: 305 TLGSKNPEYKEPLYDVKELRGIVPADHKQSFDVRSVIARIVDGSEFDEFKKNYGTTLVTG 364

Query: 362 FAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGI 421
           FA+I+GQPVGIIGNNGILF ESALKGAHFIELC QR IPL+FLQNITGFMVGSRSEA+GI
Sbjct: 365 FARIYGQPVGIIGNNGILFTESALKGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGI 424

Query: 422 AKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQA 481
           AKAGAKMVMAV+CAKVPK+TIIVGGSFGAGNY MCGRAYSPNF+F+WPNARI VMGGAQA
Sbjct: 425 AKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMGGAQA 484

Query: 482 AGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTR 541
           AGVL+Q+E++ KK+QGI+W+K+EEE FKAK VEAYE+E N YYSTARLWDDG+IDPADTR
Sbjct: 485 AGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTR 544

Query: 542 KIIGFCISAALNRPVEDTKYGVFRM 566
           +++G C+SAALNR  EDTK+GVFRM
Sbjct: 545 RVLGLCLSAALNRSPEDTKFGVFRM 569

Length = 569
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|216259 pfam01039, Carboxyl_trans, Carboxyl transferase domain Back     alignment and domain information
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Back     alignment and domain information
>gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|178769 PLN03230, PLN03230, acetyl-coenzyme A carboxylase carboxyl transferase; Provisional Back     alignment and domain information
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
COG4799526 Acetyl-CoA carboxylase, carboxyltransferase compon 100.0
PLN02820569 3-methylcrotonyl-CoA carboxylase, beta chain 100.0
KOG0540536 consensus 3-Methylcrotonyl-CoA carboxylase, non-bi 100.0
TIGR01117512 mmdA methylmalonyl-CoA decarboxylase alpha subunit 100.0
PF01039493 Carboxyl_trans: Carboxyl transferase domain; Inter 100.0
KOG03682196 consensus Acetyl-CoA carboxylase [Lipid transport 100.0
PRK07189301 malonate decarboxylase subunit beta; Reviewed 100.0
TIGR03133274 malonate_beta malonate decarboxylase, beta subunit 100.0
CHL00174296 accD acetyl-CoA carboxylase beta subunit; Reviewed 100.0
PRK05654292 acetyl-CoA carboxylase subunit beta; Validated 100.0
TIGR00515285 accD acetyl-CoA carboxylase, carboxyl transferase, 100.0
PRK05724319 acetyl-CoA carboxylase carboxyltransferase subunit 100.0
COG0777294 AccD Acetyl-CoA carboxylase beta subunit [Lipid me 100.0
TIGR00513316 accA acetyl-CoA carboxylase, carboxyl transferase, 100.0
TIGR03134238 malonate_gamma malonate decarboxylase, gamma subun 100.0
PRK12319256 acetyl-CoA carboxylase subunit alpha; Provisional 100.0
PRK05654292 acetyl-CoA carboxylase subunit beta; Validated 100.0
TIGR00515285 accD acetyl-CoA carboxylase, carboxyl transferase, 100.0
PLN03230431 acetyl-coenzyme A carboxylase carboxyl transferase 100.0
CHL00198322 accA acetyl-CoA carboxylase carboxyltransferase al 100.0
PLN03229 762 acetyl-coenzyme A carboxylase carboxyl transferase 99.97
PRK12319256 acetyl-CoA carboxylase subunit alpha; Provisional 99.97
COG0777294 AccD Acetyl-CoA carboxylase beta subunit [Lipid me 99.96
CHL00198322 accA acetyl-CoA carboxylase carboxyltransferase al 99.95
TIGR00513316 accA acetyl-CoA carboxylase, carboxyl transferase, 99.95
PLN03229 762 acetyl-coenzyme A carboxylase carboxyl transferase 99.95
CHL00174296 accD acetyl-CoA carboxylase beta subunit; Reviewed 99.95
TIGR01117512 mmdA methylmalonyl-CoA decarboxylase alpha subunit 99.95
PRK05724319 acetyl-CoA carboxylase carboxyltransferase subunit 99.95
COG0825317 AccA Acetyl-CoA carboxylase alpha subunit [Lipid m 99.94
PLN03230431 acetyl-coenzyme A carboxylase carboxyl transferase 99.94
COG4799526 Acetyl-CoA carboxylase, carboxyltransferase compon 99.9
PLN02820569 3-methylcrotonyl-CoA carboxylase, beta chain 99.89
PF01039493 Carboxyl_trans: Carboxyl transferase domain; Inter 99.88
TIGR03134238 malonate_gamma malonate decarboxylase, gamma subun 99.86
TIGR03133274 malonate_beta malonate decarboxylase, beta subunit 99.86
KOG0540536 consensus 3-Methylcrotonyl-CoA carboxylase, non-bi 99.86
PRK07189301 malonate decarboxylase subunit beta; Reviewed 99.81
COG0825317 AccA Acetyl-CoA carboxylase alpha subunit [Lipid m 99.79
PF06833234 MdcE: Malonate decarboxylase gamma subunit (MdcE); 99.75
TIGR03222546 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p 98.67
PF03255145 ACCA: Acetyl co-enzyme A carboxylase carboxyltrans 98.65
PF06833234 MdcE: Malonate decarboxylase gamma subunit (MdcE); 98.52
PRK08184550 benzoyl-CoA-dihydrodiol lyase; Provisional 98.49
cd07020187 Clp_protease_NfeD_1 Nodulation formation efficienc 98.29
PF03255145 ACCA: Acetyl co-enzyme A carboxylase carboxyltrans 98.29
cd07021178 Clp_protease_NfeD_like Nodulation formation effici 98.23
cd07015172 Clp_protease_NfeD Nodulation formation efficiency 98.22
cd07020187 Clp_protease_NfeD_1 Nodulation formation efficienc 97.91
PRK00277200 clpP ATP-dependent Clp protease proteolytic subuni 97.7
TIGR00705584 SppA_67K signal peptide peptidase SppA, 67K type. 97.61
PRK10949618 protease 4; Provisional 97.58
cd07016160 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- 97.53
TIGR00706207 SppA_dom signal peptide peptidase SppA, 36K type. 97.51
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 97.51
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 97.48
PRK12553207 ATP-dependent Clp protease proteolytic subunit; Re 97.45
COG1030 436 NfeD Membrane-bound serine protease (ClpP class) [ 97.42
PRK14512197 ATP-dependent Clp protease proteolytic subunit; Pr 97.41
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 97.41
TIGR02280256 PaaB1 phenylacetate degradation probable enoyl-CoA 97.36
PF00378245 ECH: Enoyl-CoA hydratase/isomerase family; InterPr 97.34
PRK06143256 enoyl-CoA hydratase; Provisional 97.32
cd00394161 Clp_protease_like Caseinolytic protease (ClpP) is 97.31
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 97.27
PRK06144262 enoyl-CoA hydratase; Provisional 97.26
cd07013162 S14_ClpP Caseinolytic protease (ClpP) is an ATP-de 97.26
TIGR00493191 clpP ATP-dependent Clp protease, proteolytic subun 97.25
cd07021178 Clp_protease_NfeD_like Nodulation formation effici 97.25
PRK06213229 enoyl-CoA hydratase; Provisional 97.25
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 97.25
PRK09076258 enoyl-CoA hydratase; Provisional 97.25
cd06558195 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy 97.25
COG1024257 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi 97.23
CHL00028200 clpP ATP-dependent Clp protease proteolytic subuni 97.23
PRK07659260 enoyl-CoA hydratase; Provisional 97.23
PRK08150255 enoyl-CoA hydratase; Provisional 97.22
PLN02267239 enoyl-CoA hydratase/isomerase family protein 97.18
PRK06127269 enoyl-CoA hydratase; Provisional 97.18
PRK07854243 enoyl-CoA hydratase; Provisional 97.18
PRK12551196 ATP-dependent Clp protease proteolytic subunit; Re 97.17
PRK08139266 enoyl-CoA hydratase; Validated 97.16
PF00378245 ECH: Enoyl-CoA hydratase/isomerase family; InterPr 97.16
cd06558195 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy 97.15
PRK07327268 enoyl-CoA hydratase; Provisional 97.14
PRK07657260 enoyl-CoA hydratase; Provisional 97.14
PRK06495257 enoyl-CoA hydratase; Provisional 97.13
PRK14514221 ATP-dependent Clp protease proteolytic subunit; Pr 97.12
PRK09120275 p-hydroxycinnamoyl CoA hydratase/lyase; Validated 97.07
PLN02600251 enoyl-CoA hydratase 97.06
PRK05995262 enoyl-CoA hydratase; Provisional 97.06
PRK05809260 3-hydroxybutyryl-CoA dehydratase; Validated 97.06
PRK07260255 enoyl-CoA hydratase; Provisional 97.05
PRK11423261 methylmalonyl-CoA decarboxylase; Provisional 97.05
cd07017171 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- 97.05
PRK09674255 enoyl-CoA hydratase-isomerase; Provisional 97.02
PLN02664275 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA 96.96
TIGR02280256 PaaB1 phenylacetate degradation probable enoyl-CoA 96.94
PRK05981266 enoyl-CoA hydratase; Provisional 96.94
PRK08138261 enoyl-CoA hydratase; Provisional 96.94
PRK14513201 ATP-dependent Clp protease proteolytic subunit; Pr 96.93
PRK07110249 polyketide biosynthesis enoyl-CoA hydratase; Valid 96.93
PRK07112255 polyketide biosynthesis enoyl-CoA hydratase; Valid 96.93
PRK11423261 methylmalonyl-CoA decarboxylase; Provisional 96.93
PRK08272302 enoyl-CoA hydratase; Provisional 96.93
PRK08140262 enoyl-CoA hydratase; Provisional 96.92
PRK06142272 enoyl-CoA hydratase; Provisional 96.91
PRK07658257 enoyl-CoA hydratase; Provisional 96.9
PRK07938249 enoyl-CoA hydratase; Provisional 96.9
PRK09674255 enoyl-CoA hydratase-isomerase; Provisional 96.89
PRK07511260 enoyl-CoA hydratase; Provisional 96.89
TIGR01929259 menB naphthoate synthase (dihydroxynaphthoic acid 96.88
PF00574182 CLP_protease: Clp protease; InterPro: IPR001907 In 96.88
PRK06190258 enoyl-CoA hydratase; Provisional 96.87
PRK07468262 enoyl-CoA hydratase; Provisional 96.87
PRK05862257 enoyl-CoA hydratase; Provisional 96.87
PRK11778330 putative inner membrane peptidase; Provisional 96.86
PRK05862257 enoyl-CoA hydratase; Provisional 96.85
TIGR03210256 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb 96.84
PRK08138261 enoyl-CoA hydratase; Provisional 96.79
PRK05980260 enoyl-CoA hydratase; Provisional 96.79
PRK06688259 enoyl-CoA hydratase; Provisional 96.78
PRK05869222 enoyl-CoA hydratase; Validated 96.77
PRK07396273 dihydroxynaphthoic acid synthetase; Validated 96.77
PRK06023251 enoyl-CoA hydratase; Provisional 96.74
PRK05981266 enoyl-CoA hydratase; Provisional 96.73
TIGR03189251 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy 96.73
cd07015172 Clp_protease_NfeD Nodulation formation efficiency 96.7
PRK06688259 enoyl-CoA hydratase; Provisional 96.7
PRK05869222 enoyl-CoA hydratase; Validated 96.7
PRK07112255 polyketide biosynthesis enoyl-CoA hydratase; Valid 96.68
PRK07110249 polyketide biosynthesis enoyl-CoA hydratase; Valid 96.66
PRK09245266 enoyl-CoA hydratase; Provisional 96.65
PLN02267239 enoyl-CoA hydratase/isomerase family protein 96.64
cd07014177 S49_SppA Signal peptide peptidase A. Signal peptid 96.64
PRK06494259 enoyl-CoA hydratase; Provisional 96.63
PRK07511260 enoyl-CoA hydratase; Provisional 96.62
PRK08260296 enoyl-CoA hydratase; Provisional 96.61
COG0616317 SppA Periplasmic serine proteases (ClpP class) [Po 96.6
PRK08140262 enoyl-CoA hydratase; Provisional 96.59
PRK08321302 naphthoate synthase; Validated 96.58
PRK07468262 enoyl-CoA hydratase; Provisional 96.56
cd07016160 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- 96.56
PRK07659260 enoyl-CoA hydratase; Provisional 96.55
PRK07827260 enoyl-CoA hydratase; Provisional 96.52
PRK05674265 gamma-carboxygeranoyl-CoA hydratase; Validated 96.52
PRK06563255 enoyl-CoA hydratase; Provisional 96.51
PRK05809260 3-hydroxybutyryl-CoA dehydratase; Validated 96.5
PRK05674265 gamma-carboxygeranoyl-CoA hydratase; Validated 96.5
PRK09120275 p-hydroxycinnamoyl CoA hydratase/lyase; Validated 96.49
PRK08150255 enoyl-CoA hydratase; Provisional 96.49
PRK08321302 naphthoate synthase; Validated 96.48
PRK03580261 carnitinyl-CoA dehydratase; Provisional 96.48
PRK06144262 enoyl-CoA hydratase; Provisional 96.48
PRK09076258 enoyl-CoA hydratase; Provisional 96.48
PRK06023251 enoyl-CoA hydratase; Provisional 96.47
PRK06495257 enoyl-CoA hydratase; Provisional 96.47
PRK06494259 enoyl-CoA hydratase; Provisional 96.47
PRK05864276 enoyl-CoA hydratase; Provisional 96.47
PRK08258277 enoyl-CoA hydratase; Provisional 96.46
PLN03214278 probable enoyl-CoA hydratase/isomerase; Provisiona 96.45
TIGR01929259 menB naphthoate synthase (dihydroxynaphthoic acid 96.45
PF01972285 SDH_sah: Serine dehydrogenase proteinase; InterPro 96.45
PRK06127269 enoyl-CoA hydratase; Provisional 96.44
PRK08252254 enoyl-CoA hydratase; Provisional 96.43
PRK07799263 enoyl-CoA hydratase; Provisional 96.41
PRK07260255 enoyl-CoA hydratase; Provisional 96.4
PRK07657260 enoyl-CoA hydratase; Provisional 96.4
PRK07938249 enoyl-CoA hydratase; Provisional 96.4
PRK06213229 enoyl-CoA hydratase; Provisional 96.39
PLN02888265 enoyl-CoA hydratase 96.39
TIGR03210256 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb 96.38
PRK06142272 enoyl-CoA hydratase; Provisional 96.38
PLN02921327 naphthoate synthase 96.38
PLN02664275 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA 96.38
PRK06563255 enoyl-CoA hydratase; Provisional 96.37
PRK06072248 enoyl-CoA hydratase; Provisional 96.37
PRK05995262 enoyl-CoA hydratase; Provisional 96.35
PRK08258277 enoyl-CoA hydratase; Provisional 96.34
PRK06190258 enoyl-CoA hydratase; Provisional 96.33
TIGR03200 360 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy 96.33
TIGR03189251 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy 96.29
COG0740200 ClpP Protease subunit of ATP-dependent Clp proteas 96.29
PLN02600251 enoyl-CoA hydratase 96.27
PLN02888265 enoyl-CoA hydratase 96.23
PRK07327268 enoyl-CoA hydratase; Provisional 96.22
cd00394161 Clp_protease_like Caseinolytic protease (ClpP) is 96.22
cd07019211 S49_SppA_1 Signal peptide peptidase A (SppA), a se 96.19
PRK08259254 enoyl-CoA hydratase; Provisional 96.19
PRK05980260 enoyl-CoA hydratase; Provisional 96.19
PRK07854243 enoyl-CoA hydratase; Provisional 96.19
PRK06210272 enoyl-CoA hydratase; Provisional 96.18
PRK08290288 enoyl-CoA hydratase; Provisional 96.18
PRK08260296 enoyl-CoA hydratase; Provisional 96.17
PRK08139266 enoyl-CoA hydratase; Validated 96.16
PRK08259254 enoyl-CoA hydratase; Provisional 96.16
PRK07396273 dihydroxynaphthoic acid synthetase; Validated 96.15
KOG0840275 consensus ATP-dependent Clp protease, proteolytic 96.15
PRK06210272 enoyl-CoA hydratase; Provisional 96.15
PRK07799263 enoyl-CoA hydratase; Provisional 96.13
PRK03580261 carnitinyl-CoA dehydratase; Provisional 96.11
cd07022214 S49_Sppa_36K_type Signal peptide peptidase A (SppA 96.11
PRK12552222 ATP-dependent Clp protease-like protein; Reviewed 96.1
COG1030436 NfeD Membrane-bound serine protease (ClpP class) [ 96.09
PRK08788287 enoyl-CoA hydratase; Validated 96.07
PRK09245266 enoyl-CoA hydratase; Provisional 96.04
PRK08290288 enoyl-CoA hydratase; Provisional 96.02
PRK08272302 enoyl-CoA hydratase; Provisional 96.02
PRK08252254 enoyl-CoA hydratase; Provisional 96.0
PRK07658257 enoyl-CoA hydratase; Provisional 96.0
PRK05870249 enoyl-CoA hydratase; Provisional 95.99
PRK07509262 enoyl-CoA hydratase; Provisional 95.96
PLN02874379 3-hydroxyisobutyryl-CoA hydrolase-like protein 95.94
PRK06143256 enoyl-CoA hydratase; Provisional 95.9
cd07023208 S49_Sppa_N_C Signal peptide peptidase A (SppA), a 95.89
PLN03214278 probable enoyl-CoA hydratase/isomerase; Provisiona 95.88
PRK05870249 enoyl-CoA hydratase; Provisional 95.88
PRK05864276 enoyl-CoA hydratase; Provisional 95.84
COG1024257 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi 95.8
PRK08788287 enoyl-CoA hydratase; Validated 95.79
KOG1680290 consensus Enoyl-CoA hydratase [Lipid transport and 95.7
PRK07827260 enoyl-CoA hydratase; Provisional 95.66
PLN02921327 naphthoate synthase 95.62
PRK05617342 3-hydroxyisobutyryl-CoA hydrolase; Provisional 95.48
PRK12478298 enoyl-CoA hydratase; Provisional 95.43
PRK11730 715 fadB multifunctional fatty acid oxidation complex 95.39
TIGR00706207 SppA_dom signal peptide peptidase SppA, 36K type. 95.37
PRK07509262 enoyl-CoA hydratase; Provisional 95.34
KOG03682196 consensus Acetyl-CoA carboxylase [Lipid transport 95.2
PLN02851407 3-hydroxyisobutyryl-CoA hydrolase-like protein 94.76
TIGR02437 714 FadB fatty oxidation complex, alpha subunit FadB. 94.72
PRK05617 342 3-hydroxyisobutyryl-CoA hydrolase; Provisional 94.72
PRK12478298 enoyl-CoA hydratase; Provisional 94.65
COG0616317 SppA Periplasmic serine proteases (ClpP class) [Po 94.6
PLN02157 401 3-hydroxyisobutyryl-CoA hydrolase-like protein 94.6
PLN02157401 3-hydroxyisobutyryl-CoA hydrolase-like protein 94.49
PLN02851 407 3-hydroxyisobutyryl-CoA hydrolase-like protein 94.46
PLN02874 379 3-hydroxyisobutyryl-CoA hydrolase-like protein 94.45
cd07013162 S14_ClpP Caseinolytic protease (ClpP) is an ATP-de 94.41
PRK06072248 enoyl-CoA hydratase; Provisional 94.22
TIGR02441 737 fa_ox_alpha_mit fatty acid oxidation complex, alph 94.14
PRK08184 550 benzoyl-CoA-dihydrodiol lyase; Provisional 94.01
TIGR02440 699 FadJ fatty oxidation complex, alpha subunit FadJ. 94.01
cd07018222 S49_SppA_67K_type Signal peptide peptidase A (SppA 93.92
TIGR00705584 SppA_67K signal peptide peptidase SppA, 67K type. 93.88
TIGR03200360 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy 93.86
PLN02988 381 3-hydroxyisobutyryl-CoA hydrolase 93.61
PLN02988381 3-hydroxyisobutyryl-CoA hydrolase 93.45
PRK11778330 putative inner membrane peptidase; Provisional 93.43
PRK11154 708 fadJ multifunctional fatty acid oxidation complex 93.07
TIGR02437 714 FadB fatty oxidation complex, alpha subunit FadB. 92.81
PRK11730 715 fadB multifunctional fatty acid oxidation complex 92.75
TIGR02441 737 fa_ox_alpha_mit fatty acid oxidation complex, alph 92.73
TIGR03222 546 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p 92.7
TIGR02440 699 FadJ fatty oxidation complex, alpha subunit FadJ. 92.3
KOG1680290 consensus Enoyl-CoA hydratase [Lipid transport and 91.73
PRK12553207 ATP-dependent Clp protease proteolytic subunit; Re 91.32
PF01972285 SDH_sah: Serine dehydrogenase proteinase; InterPro 91.17
PRK11154 708 fadJ multifunctional fatty acid oxidation complex 90.94
cd07017171 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- 90.68
PRK00277200 clpP ATP-dependent Clp protease proteolytic subuni 90.03
PF01343154 Peptidase_S49: Peptidase family S49 peptidase clas 89.51
KOG0780483 consensus Signal recognition particle, subunit Srp 88.31
KOG0016266 consensus Enoyl-CoA hydratase/isomerase [Lipid tra 88.09
PRK10949618 protease 4; Provisional 86.06
PF00574182 CLP_protease: Clp protease; InterPro: IPR001907 In 84.2
TIGR00493191 clpP ATP-dependent Clp protease, proteolytic subun 82.61
PRK14512197 ATP-dependent Clp protease proteolytic subunit; Pr 82.5
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-131  Score=1057.72  Aligned_cols=513  Identities=45%  Similarity=0.745  Sum_probs=484.8

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccccccccc--cccccCCCcE
Q 048389           39 AFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQLAGHEL--YEETLQSGGI  116 (566)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~l~~~~~--~~~~~~~~gv  116 (566)
                      .+..|...|..+++||+++++++..+||+++++|||++||+|+||||+.|+|+|| |.|++++++++.  +.+..|++|+
T Consensus         3 ~~~~~~~~~~~~~~e~~~~~~~~~~~gg~~~~~~~~~~GkltaReRv~~LlD~Gs-f~El~~~a~~~~~~~~~~~~~dGv   81 (526)
T COG4799           3 AFGMVAMTMAEKVAELRERRAIAVAGGGEKAVEKQHGKGKLTARERVELLLDPGS-FLELGALAGHRMGGDANELPGDGV   81 (526)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhcCCHHHhhhccccCcCcHHHHHHHHcCCCc-hhhhhhhhhcccccccccCCCCee
Confidence            5677888999999999999999999999999999999999999999999999999 999999999864  6678899999


Q ss_pred             EEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCccccccCchhhHHHHHHHHH
Q 048389          117 ITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQA  196 (566)
Q Consensus       117 vtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~~~~~~~~~~~i~~~~a  196 (566)
                      |||+|+||||+|+|++||+||+|||+++.+++|+.|++++|.++++|+|+|+||+|+|+++|   ++++.+++++|++++
T Consensus        82 VtG~G~i~Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~---v~~l~g~g~iF~~~a  158 (526)
T COG4799          82 VTGIGTINGRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEG---VPSLAGYGRIFYRNA  158 (526)
T ss_pred             EEeeeeeCCeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccC---ccccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999876   678899999999999


Q ss_pred             HHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcccccccccCcceEEEcc
Q 048389          197 IMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAAVHCKTSGVSDYFAQD  276 (566)
Q Consensus       197 ~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga~~h~~~sG~~d~v~~d  276 (566)
                      ++|+. |||||+|+|+|+||++|+|+|+||+||++++++||++||++||.+|||+++.|+|||+++|++.||++|++++|
T Consensus       159 ~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mfltGP~~ik~vtGe~V~~e~LGGa~vh~~~sGva~~~a~d  237 (526)
T COG4799         159 RASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLTGPPVIKAVTGEEVSAEELGGAQVHARKSGVADLLAED  237 (526)
T ss_pred             HhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEeeCHHHHHhhcCcEeehhhccchhhhcccccceeeeecC
Confidence            99997 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCccccccccccc
Q 048389          277 ELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGT  356 (566)
Q Consensus       277 e~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g~  356 (566)
                      |.+|++.+|+||||||+++.+.+     |.....++|.++.++|++++|.|.+++||+|++|.+|+|+++|+|+++.|++
T Consensus       238 d~~Ai~~vr~~lsylp~~~~~~~-----p~~~~~~~~~~~~~~l~~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a~  312 (526)
T COG4799         238 DEDAIELVRRLLSYLPSNNREPP-----PVVPTPDEPDRDDEELDSIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYAK  312 (526)
T ss_pred             HHHHHHHHHHHHHhcCccCCCCC-----CcCCCCCCcccChhhhcccCCCCCCccccHHHHHHHhcCCccHHHHHhhhCc
Confidence            99999999999999999987543     2234567899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEECCeEEEEEEeC-----CccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHH
Q 048389          357 TLVTGFAKIFGQPVGIIGNN-----GILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMA  431 (566)
Q Consensus       357 ~vv~G~arI~G~~Vgvvan~-----G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a  431 (566)
                      ++|||||||+|+||||||||     |+|++++++|+||||++|++||||||||+||||||+|.++|+.|+++||||+++|
T Consensus       313 ~iV~GfaRi~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A  392 (526)
T COG4799         313 NIVTGFARIDGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYA  392 (526)
T ss_pred             ceEEEEEEECCEEEEEEecCccccccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhh
Confidence            99999999999999999995     9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHH
Q 048389          432 VSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAK  511 (566)
Q Consensus       432 ~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (566)
                      +++++||+||||+|++||||+++||++++++|++||||+|+|+|||||+|++++++++.++..+     ++++.+.++++
T Consensus       393 ~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~-----~~~~~~~~~~~  467 (526)
T COG4799         393 VAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAVMGPEGAVSILYRKELAAAER-----PEEREALLRKQ  467 (526)
T ss_pred             HhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeeecCHHHHHHHHHHHHhhcccC-----chhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999765543222     13334556778


Q ss_pred             HHHHHHhh-CCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCC---CCCCCcCCC
Q 048389          512 VVEAYEKE-GNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVE---DTKYGVFRM  566 (566)
Q Consensus       512 l~~~~~~~-~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~---~~~~~~~~~  566 (566)
                      +.++|+++ ++||+++++||||+||+|++||.+|..+|+++.++++.   .++||++||
T Consensus       468 ~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k~~~~~~~kk~g~~~~  526 (526)
T COG4799         468 LIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANKPVVETPLKKHGNIPL  526 (526)
T ss_pred             HHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcCccccccccccCCCCC
Confidence            99999888 99999999999999999999999999999999999764   478999997

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07189 malonate decarboxylase subunit beta; Reviewed Back     alignment and domain information
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit Back     alignment and domain information
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated Back     alignment and domain information
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit Back     alignment and domain information
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated Back     alignment and domain information
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] Back     alignment and domain information
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Back     alignment and domain information
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit Back     alignment and domain information
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional Back     alignment and domain information
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated Back     alignment and domain information
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit Back     alignment and domain information
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional Back     alignment and domain information
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional Back     alignment and domain information
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] Back     alignment and domain information
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional Back     alignment and domain information
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed Back     alignment and domain information
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit Back     alignment and domain information
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated Back     alignment and domain information
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] Back     alignment and domain information
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional Back     alignment and domain information
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] Back     alignment and domain information
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain Back     alignment and domain information
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] Back     alignment and domain information
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit Back     alignment and domain information
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit Back     alignment and domain information
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PRK07189 malonate decarboxylase subunit beta; Reviewed Back     alignment and domain information
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] Back     alignment and domain information
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins Back     alignment and domain information
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase Back     alignment and domain information
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 Back     alignment and domain information
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins Back     alignment and domain information
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional Back     alignment and domain information
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6 Back     alignment and domain information
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB Back     alignment and domain information
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix Back     alignment and domain information
>PRK06143 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK06144 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP Back     alignment and domain information
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>PRK06213 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK09076 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily Back     alignment and domain information
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] Back     alignment and domain information
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit Back     alignment and domain information
>PRK07659 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08150 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02267 enoyl-CoA hydratase/isomerase family protein Back     alignment and domain information
>PRK06127 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07854 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>PRK08139 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix Back     alignment and domain information
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily Back     alignment and domain information
>PRK07327 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07657 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06495 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated Back     alignment and domain information
>PLN02600 enoyl-CoA hydratase Back     alignment and domain information
>PRK05995 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated Back     alignment and domain information
>PRK07260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional Back     alignment and domain information
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional Back     alignment and domain information
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase Back     alignment and domain information
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB Back     alignment and domain information
>PRK05981 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08138 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional Back     alignment and domain information
>PRK08272 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08140 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06142 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07658 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07938 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional Back     alignment and domain information
>PRK07511 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) Back     alignment and domain information
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK06190 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07468 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05862 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK11778 putative inner membrane peptidase; Provisional Back     alignment and domain information
>PRK05862 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase Back     alignment and domain information
>PRK08138 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05980 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06688 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05869 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK07396 dihydroxynaphthoic acid synthetase; Validated Back     alignment and domain information
>PRK06023 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05981 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase Back     alignment and domain information
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease Back     alignment and domain information
>PRK06688 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05869 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK09245 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02267 enoyl-CoA hydratase/isomerase family protein Back     alignment and domain information
>cd07014 S49_SppA Signal peptide peptidase A Back     alignment and domain information
>PRK06494 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07511 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08140 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08321 naphthoate synthase; Validated Back     alignment and domain information
>PRK07468 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>PRK07659 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07827 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK06563 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated Back     alignment and domain information
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated Back     alignment and domain information
>PRK08150 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08321 naphthoate synthase; Validated Back     alignment and domain information
>PRK03580 carnitinyl-CoA dehydratase; Provisional Back     alignment and domain information
>PRK06144 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK09076 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06023 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06495 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06494 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05864 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08258 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional Back     alignment and domain information
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) Back     alignment and domain information
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily Back     alignment and domain information
>PRK06127 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08252 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07799 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07657 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07938 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06213 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02888 enoyl-CoA hydratase Back     alignment and domain information
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase Back     alignment and domain information
>PRK06142 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02921 naphthoate synthase Back     alignment and domain information
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase Back     alignment and domain information
>PRK06563 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06072 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05995 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08258 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06190 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase Back     alignment and domain information
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase Back     alignment and domain information
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN02600 enoyl-CoA hydratase Back     alignment and domain information
>PLN02888 enoyl-CoA hydratase Back     alignment and domain information
>PRK07327 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease Back     alignment and domain information
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK08259 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05980 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07854 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK06210 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08290 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08260 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08139 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK08259 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07396 dihydroxynaphthoic acid synthetase; Validated Back     alignment and domain information
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06210 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07799 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK03580 carnitinyl-CoA dehydratase; Provisional Back     alignment and domain information
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed Back     alignment and domain information
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08788 enoyl-CoA hydratase; Validated Back     alignment and domain information
>PRK09245 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08290 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08272 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK08252 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07658 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05870 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK07509 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>PRK06143 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional Back     alignment and domain information
>PRK05870 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK05864 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] Back     alignment and domain information
>PRK08788 enoyl-CoA hydratase; Validated Back     alignment and domain information
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07827 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PLN02921 naphthoate synthase Back     alignment and domain information
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional Back     alignment and domain information
>PRK12478 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type Back     alignment and domain information
>PRK07509 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB Back     alignment and domain information
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional Back     alignment and domain information
>PRK12478 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein Back     alignment and domain information
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>PRK06072 enoyl-CoA hydratase; Provisional Back     alignment and domain information
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial Back     alignment and domain information
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional Back     alignment and domain information
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ Back     alignment and domain information
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad Back     alignment and domain information
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type Back     alignment and domain information
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase Back     alignment and domain information
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase Back     alignment and domain information
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase Back     alignment and domain information
>PRK11778 putative inner membrane peptidase; Provisional Back     alignment and domain information
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB Back     alignment and domain information
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial Back     alignment and domain information
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase Back     alignment and domain information
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ Back     alignment and domain information
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] Back     alignment and domain information
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily Back     alignment and domain information
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Back     alignment and domain information
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease Back     alignment and domain information
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed Back     alignment and domain information
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification Back     alignment and domain information
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] Back     alignment and domain information
>PRK10949 protease 4; Provisional Back     alignment and domain information
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP Back     alignment and domain information
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3u9r_B555 Crystal Structure Of P. Aeruginosa 3-methylcrotonyl 0.0
1on3_A523 Transcarboxylase 12s Crystal Structure: Hexamer Ass 1e-70
1vrg_A527 Crystal Structure Of Propionyl-coa Carboxylase, Bet 1e-66
3n6r_B531 Crystal Structure Of The Holoenzyme Of Propionyl-co 1e-66
1x0u_A522 Crystal Structure Of The Carboxyl Transferase Subun 3e-66
1xnw_A530 Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo 3e-65
3iav_A530 Propionyl-Coa Carboxylase Beta Subunit, D422v Lengt 3e-65
3mfm_C530 Crystal Structures And Mutational Analyses Of Acyl- 3e-65
3ib9_A530 Propionyl-Coa Carboxylase Beta Subunit, D422l Lengt 3e-65
3ibb_A530 Propionyl-Coa Carboxylase Beta Subunit, D422a Lengt 4e-65
1xnv_A530 Acyl-Coa Carboxylase Beta Subunit From S. Coelicolo 5e-65
2a7s_A548 Crystal Structure Of The Acyl-Coa Carboxylase, Accd 4e-63
2bzr_A548 Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Ca 4e-62
3gf3_A588 Glutaconyl-Coa Decarboxylase A Subunit From Clostri 7e-46
1pix_A587 Crystal Structure Of The Carboxyltransferase Subuni 5e-38
1uyv_A 737 Acetyl-Coa Carboxylase Carboxyltransferase Domain L 1e-07
1w2x_A 758 Crystal Structure Of The Carboxyltransferase Domain 2e-07
3pgq_A 764 Crystal Structure Of The Carboxyltransferase Domain 2e-07
3h0j_A 769 Crystal Structure Of The Carboxyltransferase Domain 2e-07
1uyr_A 737 Acetyl-Coa Carboxylase Carboxyltransferase Domain I 2e-07
3tv5_A 769 Crystal Structure Of The Humanized Carboxyltransfer 3e-06
3tdc_A 762 Crystal Structure Of Human Acetyl-Coa Carboxylase 2 4e-06
3ff6_A 760 Human Acc2 Ct Domain With Cp-640186 Length = 760 4e-06
1uys_A 737 Acetyl-Coa Carboxylase Carboxyltransferase Domain I 4e-06
1od2_A 805 Acetyl-Coa Carboxylase Carboxyltransferase Domain L 5e-06
2f9y_A339 The Crystal Structure Of The Carboxyltransferase Su 1e-05
2f9y_A339 The Crystal Structure Of The Carboxyltransferase Su 5e-04
4asi_A 769 Crystal Structure Of Human Acaca C-Terminal Domain 4e-05
2x24_A 793 Bovine Acc2 Ct Domain In Complex With Inhibitor Len 1e-04
>pdb|3U9R|B Chain B, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc), Beta Subunit Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/545 (60%), Positives = 421/545 (77%), Gaps = 6/545 (1%)
Query: 22  RALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLP 81
           R  H+++L   ++  S  F  N+  M   V+ L++ + ++  GGG +A  R+ +R KLL 
Sbjct: 17  RGSHMAILHTQINPRSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLV 76
Query: 82  RERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGT 141
           RERI+RL DPGS FLELS LA HE+Y E + + GI+ GIG V G  CM V ND TVKGGT
Sbjct: 77  RERINRLLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGT 136
Query: 142 YFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQAIMSAE 201
           Y+P+T+KKHLRAQ IA + +LPCIYLVDSGGA LP+Q EVFPD+E+FGRIF+NQA MSA 
Sbjct: 137 YYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSAR 196
Query: 202 GIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGAA 261
           GIPQIA+V+GSCTAGGAY+PAM+DE+VMV+   TIFLAGPPLVKAATGE +SAE+LGGA 
Sbjct: 197 GIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEVVSAEELGGAD 256
Query: 262 VHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELY 321
           VHCK SGV+D++A+D+ H L++ R  + NL+   +QG++   Q   P  + PLY  +ELY
Sbjct: 257 VHCKVSGVADHYAEDDDHALAIARRCVANLNWR-KQGQL---QCRAP--RAPLYPAEELY 310
Query: 322 SIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFH 381
            + PAD KQ +D+R VIAR+VDGSEFDEFK L+GTTLV GFA + G P+ I+ NNGILF 
Sbjct: 311 GVIPADSKQPYDVREVIARLVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILANNGILFA 370
Query: 382 ESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVT 441
           E+A KGAHFIEL  QR IPL+FLQNITGFMVG + EA GIAK GAK+V AV+CA+VPK T
Sbjct: 371 EAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFT 430
Query: 442 IIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWT 501
           +++GGSFGAGNY MCGRAY P F+++WPNARI VMGG QAAGVL+QV++++ ++ G +  
Sbjct: 431 VLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAERAGQQLG 490
Query: 502 KQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKY 561
            +EE   KA ++E YE +G+ YYS+ARLWDDG+IDPA TR+++   +SAALN P+E T +
Sbjct: 491 VEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNAPIEPTAF 550
Query: 562 GVFRM 566
           GVFRM
Sbjct: 551 GVFRM 555
>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly And Substrate Binding To A Multienzyme Core (With Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound) Length = 523 Back     alignment and structure
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta Subunit (tm0716) From Thermotoga Maritima At 2.30 A Resolution Length = 527 Back     alignment and structure
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 531 Back     alignment and structure
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of Putative Pcc Of Sulfolobus Tokodaii Length = 522 Back     alignment and structure
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #2, Mutant D422i Length = 530 Back     alignment and structure
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v Length = 530 Back     alignment and structure
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Subunit Of Streptomyces Coelicolor Length = 530 Back     alignment and structure
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l Length = 530 Back     alignment and structure
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a Length = 530 Back     alignment and structure
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor (Pccb), Apo Form #1 Length = 530 Back     alignment and structure
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From Mycobacterium Tuberculosis Length = 548 Back     alignment and structure
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa Carboxylase Beta-Subunit From Mycobacterium Tuberculosis Length = 548 Back     alignment and structure
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium Symbiosum Co-Crystallized With Glutaconyl-Coa Length = 588 Back     alignment and structure
>pdb|1PIX|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of The Bacterial Ion Pump Glutaconyl-Coenzyme A Decarboxylase Length = 587 Back     alignment and structure
>pdb|1UYV|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain L1705i V1967i Mutant Length = 737 Back     alignment and structure
>pdb|1W2X|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Cp-640186 Length = 758 Back     alignment and structure
>pdb|3PGQ|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of S. Cerevisiae Acetyl Coa Carboxylase In Complex With Pinoxaden Length = 764 Back     alignment and structure
>pdb|3H0J|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of Acetyl-Coenzyme A Carboxylase In Complex With Compound 2 Length = 769 Back     alignment and structure
>pdb|1UYR|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Diclofop Length = 737 Back     alignment and structure
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase Domain Of Yeast Acetyl-Coa Caroxylase In Complex With Compound 1 Length = 769 Back     alignment and structure
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2 Length = 762 Back     alignment and structure
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186 Length = 760 Back     alignment and structure
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In Complex With Inhibitor Haloxyfop Length = 737 Back     alignment and structure
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain Length = 805 Back     alignment and structure
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Escherichia Coli Length = 339 Back     alignment and structure
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit Of Acc From Escherichia Coli Length = 339 Back     alignment and structure
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain Length = 769 Back     alignment and structure
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor Length = 793 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3u9r_B555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 0.0
1pix_A587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 0.0
3gf3_A588 Glutaconyl-COA decarboxylase subunit A; sodium ION 0.0
1vrg_A527 Propionyl-COA carboxylase, beta subunit; TM0716, s 1e-138
2bzr_A548 Propionyl-COA carboxylase beta chain 5; fatty acid 1e-137
1on3_A523 Methylmalonyl-COA carboxyltransferase 12S subunit; 1e-137
3iav_A530 Propionyl-COA carboxylase complex B subunit; accas 1e-135
1x0u_A522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 1e-135
3n6r_B531 Propionyl-COA carboxylase, beta subunit; protein c 1e-134
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 4e-85
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 8e-60
3k8x_A 758 Acetyl-COA carboxylase; transferase, carboxyltrans 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2f9i_A327 Acetyl-coenzyme A carboxylase carboxyl transferase 8e-04
2f9y_A339 Acetyl-COA carboxylase, carboxyltransferase alpha; 8e-04
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Length = 555 Back     alignment and structure
 Score =  963 bits (2492), Expect = 0.0
 Identities = 327/551 (59%), Positives = 419/551 (76%), Gaps = 6/551 (1%)

Query: 16  ANSIRTRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRS 75
           ++ +  R  H+++L   ++  S  F  N+  M   V+ L++ + ++  GGG +A  R+ +
Sbjct: 11  SSGLVPRGSHMAILHTQINPRSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQARHSA 70

Query: 76  RNKLLPRERIDRLTDPGSSFLELSQLAGHELYEETLQSGGIITGIGPVHGRLCMFVANDP 135
           R KLL RERI+RL DPGS FLELS LA HE+Y E + + GI+ GIG V G  CM V ND 
Sbjct: 71  RGKLLVRERINRLLDPGSPFLELSALAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDA 130

Query: 136 TVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFYNQ 195
           TVKGGTY+P+T+KKHLRAQ IA + +LPCIYLVDSGGA LP+Q EVFPD+E+FGRIF+NQ
Sbjct: 131 TVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQ 190

Query: 196 AIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAE 255
           A MSA GIPQIA+V+GSCTAGGAY+PAM+DE+VMV+   TIFLAGPPLVKAATGE +SAE
Sbjct: 191 ANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEVVSAE 250

Query: 256 DLGGAAVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLY 315
           +LGGA VHCK SGV+D++A+D+ H L++ R  + NL+   +       Q   P    PLY
Sbjct: 251 ELGGADVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQG----QLQCRAPR--APLY 304

Query: 316 DVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGN 375
             +ELY + PAD KQ +D+R VIAR+VDGSEFDEFK L+GTTLV GFA + G P+ I+ N
Sbjct: 305 PAEELYGVIPADSKQPYDVREVIARLVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILAN 364

Query: 376 NGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCA 435
           NGILF E+A KGAHFIEL  QR IPL+FLQNITGFMVG + EA GIAK GAK+V AV+CA
Sbjct: 365 NGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACA 424

Query: 436 KVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKK 495
           +VPK T+++GGSFGAGNY MCGRAY P F+++WPNARI VMGG QAAGVL+QV++++ ++
Sbjct: 425 RVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAER 484

Query: 496 QGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRP 555
            G +   +EE   KA ++E YE +G+ YYS+ARLWDDG+IDPA TR+++   +SAALN P
Sbjct: 485 AGQQLGVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNAP 544

Query: 556 VEDTKYGVFRM 566
           +E T +GVFRM
Sbjct: 545 IEPTAFGVFRM 555
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Length = 527 Back     alignment and structure
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 Back     alignment and structure
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Length = 530 Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Length = 522 Back     alignment and structure
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Length = 531 Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Length = 793 Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Length = 327 Back     alignment and structure
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
3u9r_B555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 100.0
3iav_A530 Propionyl-COA carboxylase complex B subunit; accas 100.0
3n6r_B531 Propionyl-COA carboxylase, beta subunit; protein c 100.0
3gf3_A588 Glutaconyl-COA decarboxylase subunit A; sodium ION 100.0
1pix_A587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 100.0
2bzr_A548 Propionyl-COA carboxylase beta chain 5; fatty acid 100.0
1on3_A523 Methylmalonyl-COA carboxyltransferase 12S subunit; 100.0
1x0u_A522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 100.0
1vrg_A527 Propionyl-COA carboxylase, beta subunit; TM0716, s 100.0
2x24_A 793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 100.0
3k8x_A758 Acetyl-COA carboxylase; transferase, carboxyltrans 100.0
2f9i_B285 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
2f9y_B304 Acetyl-coenzyme A carboxylase carboxyl transferas 100.0
2f9i_B285 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
2f9i_A327 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
2f9y_A339 Acetyl-COA carboxylase, carboxyltransferase alpha; 100.0
1x0u_A522 Hypothetical methylmalonyl-COA decarboxylase ALPH; 99.97
2f9y_B304 Acetyl-coenzyme A carboxylase carboxyl transferas 99.96
2f9i_A327 Acetyl-coenzyme A carboxylase carboxyl transferase 99.95
2f9y_A339 Acetyl-COA carboxylase, carboxyltransferase alpha; 99.95
1vrg_A527 Propionyl-COA carboxylase, beta subunit; TM0716, s 99.93
3iav_A530 Propionyl-COA carboxylase complex B subunit; accas 99.92
2bzr_A548 Propionyl-COA carboxylase beta chain 5; fatty acid 99.92
3n6r_B531 Propionyl-COA carboxylase, beta subunit; protein c 99.92
1on3_A523 Methylmalonyl-COA carboxyltransferase 12S subunit; 99.92
1pix_A587 Glutaconyl-COA decarboxylase A subunit; biotin-dep 99.87
3u9r_B555 MCC beta, methylcrotonyl-COA carboxylase, beta-sub 99.86
3gf3_A588 Glutaconyl-COA decarboxylase subunit A; sodium ION 99.86
3k8x_A758 Acetyl-COA carboxylase; transferase, carboxyltrans 99.78
2x24_A793 Acetyl-COA carboxylase; fatty acid biosynthesis, l 99.77
3viv_A230 441AA long hypothetical NFED protein; protein-pept 98.24
3bf0_A593 Protease 4; bacterial, hydrolase, inner membrane, 98.13
1y7o_A218 ATP-dependent CLP protease proteolytic subunit; hy 97.96
2f6i_A215 ATP-dependent CLP protease, putative; structural g 97.95
2cby_A208 ATP-dependent CLP protease proteolytic subunit 1; 97.85
3viv_A230 441AA long hypothetical NFED protein; protein-pept 97.73
1tg6_A277 Putative ATP-dependent CLP protease proteolytic S; 97.69
3p2l_A201 ATP-dependent CLP protease proteolytic subunit; st 97.65
1yg6_A193 ATP-dependent CLP protease proteolytic subunit; en 97.64
3qwd_A203 ATP-dependent CLP protease proteolytic subunit; ca 97.55
3isa_A254 Putative enoyl-COA hydratase/isomerase; structural 97.38
4gm2_A205 ATP-dependent CLP protease proteolytic subunit; st 97.25
2j5g_A263 ALR4455 protein; enzyme evolution, C-C bond hydrol 97.16
3rst_A240 Signal peptide peptidase SPPA; alpha/beta protein 97.15
2a7k_A250 CARB; crotonase, antibiotic, beta-lactam, biosynth 97.14
3he2_A264 Enoyl-COA hydratase ECHA6; fatty acid metabolism, 97.12
3lke_A263 Enoyl-COA hydratase; nysgrc, target 112 structural 97.06
3myb_A286 Enoyl-COA hydratase; ssgcid, struct genomics, seat 97.05
2f6q_A280 Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis 97.04
3kqf_A265 Enoyl-COA hydratase/isomerase family protein; IDP0 97.03
3i47_A268 Enoyl COA hydratase/isomerase (crotonase); structu 97.02
2vx2_A287 Enoyl-COA hydratase domain-containing protein 3; i 96.97
3p5m_A255 Enoyl-COA hydratase/isomerase; seattle structural 96.97
3isa_A254 Putative enoyl-COA hydratase/isomerase; structural 96.96
1uiy_A253 Enoyl-COA hydratase; lyase, beta-oxidation, croton 96.95
2f6q_A280 Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis 96.93
3hrx_A254 Probable enoyl-COA hydratase; the spiral fold, the 96.93
3pea_A261 Enoyl-COA hydratase/isomerase family protein; stru 96.93
3gow_A254 PAAG, probable enoyl-COA hydratase; the spiral fol 96.91
2fbm_A291 Y chromosome chromodomain protein 1, telomeric IS; 96.91
3qmj_A256 Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, 96.91
1ef8_A261 Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc 96.91
1szo_A257 6-oxocamphor hydrolase; enzyme-product complex; HE 96.9
3l3s_A263 Enoyl-COA hydratase/isomerase family protein; crot 96.89
3lke_A263 Enoyl-COA hydratase; nysgrc, target 112 structural 96.88
1sg4_A260 3,2-trans-enoyl-COA isomerase, mitochondrial; crot 96.88
3r6h_A233 Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m 96.87
1ef8_A261 Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc 96.86
3hin_A275 Putative 3-hydroxybutyryl-COA dehydratase; structu 96.86
3ot6_A232 Enoyl-COA hydratase/isomerase family protein; stru 96.85
2gtr_A261 CDY-like, chromodomain Y-like protein; structural 96.85
2a7k_A250 CARB; crotonase, antibiotic, beta-lactam, biosynth 96.83
2ej5_A257 Enoyl-COA hydratase subunit II; structural genomic 96.82
4di1_A277 Enoyl-COA hydratase ECHA17; structural genomics, s 96.81
3bf0_A593 Protease 4; bacterial, hydrolase, inner membrane, 96.81
3gow_A254 PAAG, probable enoyl-COA hydratase; the spiral fol 96.81
2ej5_A257 Enoyl-COA hydratase subunit II; structural genomic 96.81
4fzw_C274 1,2-epoxyphenylacetyl-COA isomerase; structural ge 96.78
2pbp_A258 Enoyl-COA hydratase subunit I; B-oxidation, struct 96.78
4fzw_A258 2,3-dehydroadipyl-COA hydratase; structural genomi 96.78
2ppy_A265 Enoyl-COA hydratase; beta-oxidation, fatty acid me 96.78
3he2_A264 Enoyl-COA hydratase ECHA6; fatty acid metabolism, 96.76
1dci_A275 Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg 96.76
4fzw_C274 1,2-epoxyphenylacetyl-COA isomerase; structural ge 96.76
3hp0_A267 Putative polyketide biosynthesis enoyl-COA hydrata 96.75
3i47_A268 Enoyl COA hydratase/isomerase (crotonase); structu 96.75
3p5m_A255 Enoyl-COA hydratase/isomerase; seattle structural 96.75
3h81_A278 Enoyl-COA hydratase ECHA8; niaid, decode, infectio 96.74
3qk8_A272 Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB 96.74
3hrx_A254 Probable enoyl-COA hydratase; the spiral fold, the 96.73
3t89_A289 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 96.71
3rrv_A276 Enoyl-COA hydratase/isomerase; structural genomics 96.7
1wz8_A264 Enoyl-COA hydratase; lyase, crotonase, hexamer, st 96.68
3qmj_A256 Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, 96.68
3sll_A290 Probable enoyl-COA hydratase/isomerase; structural 96.67
3njd_A333 Enoyl-COA hydratase; ssgcid, mycobacerium smegmati 96.67
3l3s_A263 Enoyl-COA hydratase/isomerase family protein; crot 96.66
1nzy_A269 Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen 96.66
3r6h_A233 Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m 96.65
2ppy_A265 Enoyl-COA hydratase; beta-oxidation, fatty acid me 96.64
3myb_A286 Enoyl-COA hydratase; ssgcid, struct genomics, seat 96.59
4fzw_A258 2,3-dehydroadipyl-COA hydratase; structural genomi 96.58
3pea_A261 Enoyl-COA hydratase/isomerase family protein; stru 96.57
1nzy_A269 Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen 96.55
3kqf_A265 Enoyl-COA hydratase/isomerase family protein; IDP0 96.55
2pbp_A258 Enoyl-COA hydratase subunit I; B-oxidation, struct 96.55
3fdu_A266 Putative enoyl-COA hydratase/isomerase; structural 96.55
3h0u_A289 Putative enoyl-COA hydratase; structural genomics, 96.54
3gkb_A287 Putative enoyl-COA hydratase; structural genomics, 96.54
3gkb_A287 Putative enoyl-COA hydratase; structural genomics, 96.53
3rrv_A276 Enoyl-COA hydratase/isomerase; structural genomics 96.53
3sll_A290 Probable enoyl-COA hydratase/isomerase; structural 96.52
3rsi_A265 Putative enoyl-COA hydratase/isomerase; structural 96.51
3fdu_A266 Putative enoyl-COA hydratase/isomerase; structural 96.5
4eml_A275 Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe 96.47
3qk8_A272 Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB 96.46
3moy_A263 Probable enoyl-COA hydratase; ssgcid, seattle stru 96.45
1uiy_A253 Enoyl-COA hydratase; lyase, beta-oxidation, croton 96.42
4di1_A277 Enoyl-COA hydratase ECHA17; structural genomics, s 96.41
3oc7_A267 Enoyl-COA hydratase; seattle structural genomics c 96.4
3t3w_A279 Enoyl-COA hydratase; ssgcid, structural genomics, 96.4
3g64_A279 Putative enoyl-COA hydratase; alpha-beta structure 96.39
1dci_A275 Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg 96.38
2q35_A243 CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} 96.34
1sg4_A260 3,2-trans-enoyl-COA isomerase, mitochondrial; crot 96.33
3g64_A279 Putative enoyl-COA hydratase; alpha-beta structure 96.32
3t8b_A334 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 96.31
2gtr_A261 CDY-like, chromodomain Y-like protein; structural 96.27
3pe8_A256 Enoyl-COA hydratase; emerald biostructures, struct 96.26
3hin_A275 Putative 3-hydroxybutyryl-COA dehydratase; structu 96.26
2q35_A243 CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} 96.25
2fbm_A291 Y chromosome chromodomain protein 1, telomeric IS; 96.25
2vx2_A287 Enoyl-COA hydratase domain-containing protein 3; i 96.25
3t8b_A334 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 96.24
3t3w_A279 Enoyl-COA hydratase; ssgcid, structural genomics, 96.22
3hp0_A267 Putative polyketide biosynthesis enoyl-COA hydrata 96.21
3rsi_A265 Putative enoyl-COA hydratase/isomerase; structural 96.19
1hzd_A272 AUH, AU-binding protein/enoyl-COA hydratase; RNA-b 96.14
3oc7_A267 Enoyl-COA hydratase; seattle structural genomics c 96.1
3t89_A289 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase 96.09
1y7o_A218 ATP-dependent CLP protease proteolytic subunit; hy 96.08
4eml_A275 Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe 96.04
3trr_A256 Probable enoyl-COA hydratase/isomerase; ssgcid, st 96.04
3ot6_A232 Enoyl-COA hydratase/isomerase family protein; stru 96.03
3m6n_A305 RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X 96.03
3qre_A298 Enoyl-COA hydratase, ECHA12_1; structural genomics 96.03
1wz8_A264 Enoyl-COA hydratase; lyase, crotonase, hexamer, st 96.03
3njd_A333 Enoyl-COA hydratase; ssgcid, mycobacerium smegmati 96.03
4f47_A278 Enoyl-COA hydratase ECHA19; ssgcid, seattle struct 96.02
3lao_A258 Enoyl-COA hydratase/isomerase; alpha-beta sandwich 96.02
3zwc_A 742 Peroxisomal bifunctional enzyme; beta oxidation pa 96.01
2j5g_A263 ALR4455 protein; enzyme evolution, C-C bond hydrol 96.01
4f47_A278 Enoyl-COA hydratase ECHA19; ssgcid, seattle struct 96.0
3qxi_A265 Enoyl-COA hydratase ECHA1; structural genomics, se 96.0
3tlf_A274 Enoyl-COA hydratase/isomerase; structural genomics 96.0
2j5i_A276 P-hydroxycinnamoyl COA hydratase/lyase; vanillin, 95.99
3moy_A263 Probable enoyl-COA hydratase; ssgcid, seattle stru 95.98
3h81_A278 Enoyl-COA hydratase ECHA8; niaid, decode, infectio 95.97
3m6n_A305 RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X 95.96
2cby_A208 ATP-dependent CLP protease proteolytic subunit 1; 95.95
1pjh_A280 Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral 95.92
1hzd_A272 AUH, AU-binding protein/enoyl-COA hydratase; RNA-b 95.92
2uzf_A273 Naphthoate synthase; lyase, menaquinone biosynthes 95.91
2uzf_A273 Naphthoate synthase; lyase, menaquinone biosynthes 95.89
3pe8_A256 Enoyl-COA hydratase; emerald biostructures, struct 95.85
4hdt_A353 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti 95.8
3h0u_A289 Putative enoyl-COA hydratase; structural genomics, 95.8
1mj3_A260 Enoyl-COA hydratase, mitochondrial; homohexamer, l 95.75
2j5i_A276 P-hydroxycinnamoyl COA hydratase/lyase; vanillin, 95.71
4hdt_A 353 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti 95.62
1wdk_A 715 Fatty oxidation complex alpha subunit; alpha2BETA2 95.57
2f6i_A215 ATP-dependent CLP protease, putative; structural g 95.55
3r9q_A262 Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome 95.54
1yg6_A193 ATP-dependent CLP protease proteolytic subunit; en 95.49
3qre_A298 Enoyl-COA hydratase, ECHA12_1; structural genomics 95.43
1mj3_A260 Enoyl-COA hydratase, mitochondrial; homohexamer, l 95.42
1pjh_A280 Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral 95.41
3lao_A258 Enoyl-COA hydratase/isomerase; alpha-beta sandwich 95.36
1szo_A257 6-oxocamphor hydrolase; enzyme-product complex; HE 95.36
3qxi_A265 Enoyl-COA hydratase ECHA1; structural genomics, se 95.35
3tlf_A274 Enoyl-COA hydratase/isomerase; structural genomics 95.33
3swx_A265 Probable enoyl-COA hydratase/isomerase; structural 95.3
3swx_A265 Probable enoyl-COA hydratase/isomerase; structural 95.23
3bpt_A363 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet 95.2
2w3p_A 556 Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri 95.15
3trr_A256 Probable enoyl-COA hydratase/isomerase; ssgcid, st 95.11
3qxz_A265 Enoyl-COA hydratase/isomerase; structural genomics 95.02
2np9_A440 DPGC; protein inhibitor complex, oxidoreductase; H 94.91
3qxz_A265 Enoyl-COA hydratase/isomerase; structural genomics 94.81
3r9t_A267 ECHA1_1; ssgcid, seattle structural genomics cente 94.67
3rst_A240 Signal peptide peptidase SPPA; alpha/beta protein 94.66
3r9q_A262 Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome 94.66
3r9t_A267 ECHA1_1; ssgcid, seattle structural genomics cente 94.55
3qwd_A203 ATP-dependent CLP protease proteolytic subunit; ca 94.51
1tg6_A277 Putative ATP-dependent CLP protease proteolytic S; 94.24
2w3p_A556 Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri 94.2
3zwc_A 742 Peroxisomal bifunctional enzyme; beta oxidation pa 94.07
3ju1_A407 Enoyl-COA hydratase/isomerase family protein; alph 93.86
3p2l_A201 ATP-dependent CLP protease proteolytic subunit; st 93.83
1wdk_A 715 Fatty oxidation complex alpha subunit; alpha2BETA2 93.42
3ju1_A 407 Enoyl-COA hydratase/isomerase family protein; alph 93.14
2np9_A440 DPGC; protein inhibitor complex, oxidoreductase; H 92.92
3bpt_A 363 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet 92.63
2wtb_A 725 MFP2, fatty acid multifunctional protein (ATMFP2); 91.46
2wtb_A 725 MFP2, fatty acid multifunctional protein (ATMFP2); 90.95
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Back     alignment and structure
Probab=100.00  E-value=1.2e-132  Score=1090.95  Aligned_cols=540  Identities=60%  Similarity=1.034  Sum_probs=515.8

Q ss_pred             ccccccccccccCCCCChHHHhcHHHHHHHHHHHHHHHHHHHcCCChhHHHhhHhcCCCCHHHHHHhccCCCCCceeccc
Q 048389           21 TRALHLSVLPDAVDRNSEAFVRNSQVMQGLVSELQSHIQKVLGGGGESAVKRNRSRNKLLPRERIDRLTDPGSSFLELSQ  100 (566)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~g~l~areri~~L~D~gS~F~El~~  100 (566)
                      .+.+.||+|+|++|++++.|++|+++|++++++|++++++++++||+++++|||++||+|+||||+.|||+||||.|+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~l~~~~~~~~~~gg~~~~~~~~~~gkltaReRI~~LlD~gS~F~E~~~   95 (555)
T 3u9r_B           16 PRGSHMAILHTQINPRSAEFAANAATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRERINRLLDPGSPFLELSA   95 (555)
T ss_dssp             ----CTTBCCCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEEECT
T ss_pred             cchhhccccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCCCCHHHHHHHHcCCCCCEEEEcc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCcEEEEEEEECCEEEEEEEecCccccccCChHHHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCcccc
Q 048389          101 LAGHELYEETLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE  180 (566)
Q Consensus       101 l~~~~~~~~~~~~~gvvtG~G~I~Gr~v~v~a~D~tv~gGs~g~~~~~K~~r~~~lA~~~~lPlV~l~dsgGarl~~~~~  180 (566)
                      +++++.|+++.+++|||||+|+|+||+|+|++||+||+|||+|+.+++|+.|++++|.++++|+|+|+||+|+||++|++
T Consensus        96 l~~~~~y~~~~~~dgVVtG~G~I~Gr~v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~lPvI~l~dSgGARl~~q~~  175 (555)
T 3u9r_B           96 LAAHEVYGEEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENRLPCIYLVDSGGANLPRQDE  175 (555)
T ss_dssp             TTTTTTSSSCCGGGGEEEEEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGGGG
T ss_pred             ccccccccccCCCCcEEEEEEEECCEEEEEEEECCccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcce
Confidence            99888888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhHHHHHHHHHHHcCCCcCEEEEEeccccccccccccCCCeeEEEecceeEEeccHHHHHhhhcccccccCCCcc
Q 048389          181 VFPDKENFGRIFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEISAEDLGGA  260 (566)
Q Consensus       181 ~~~~~~~~~~i~~~~a~ls~~~VP~isvv~G~~~GG~ay~~a~~d~vi~v~~~a~i~~~GP~vv~~~~ge~v~~e~lGga  260 (566)
                      .++.+.+++++|++++++|+.+||||+||+|+|+||++|+++++|++||++++++||++||+|||+++||++++|+|||+
T Consensus       176 ~~~~~~~~~~i~~~~~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~aGP~vik~~~ge~~~~e~LGGa  255 (555)
T 3u9r_B          176 VFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLAGPPLVKAATGEVVSAEELGGA  255 (555)
T ss_dssp             TSSSTTSTTHHHHHHHHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSSCHHHHHHHHCCCCCHHHHHBH
T ss_pred             eecccccHHHHHHHHHHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEccHHHHHHHhcCccChhhccch
Confidence            88766789999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcceEEEcchhHHHHHHHHHHHhccccCCCCCcCCCCCCCCCCCCCCCChHHHhhhcccCCCCCCCHHHHhhh
Q 048389          261 AVHCKTSGVSDYFAQDELHGLSLGRNIIKNLHMAGRQGEINGFQNINPEYKEPLYDVKELYSIAPADLKQSFDIRSVIAR  340 (566)
Q Consensus       261 ~~h~~~sG~~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~  340 (566)
                      ++|+..||++|++++||++|++.+|+||+|||.++.+.+      +..++.+|.+++++|.+++|.+.+++||+|++|++
T Consensus       256 ~~h~~~sGv~d~v~~de~~a~~~~r~~ls~Lp~~~~~~~------~~~~~~~p~~~~~~l~~ivP~~~~~pyd~r~~i~~  329 (555)
T 3u9r_B          256 DVHCKVSGVADHYAEDDDHALAIARRCVANLNWRKQGQL------QCRAPRAPLYPAEELYGVIPADSKQPYDVREVIAR  329 (555)
T ss_dssp             HHHHHTTCSCSEEESSHHHHHHHHHHHHHTSCCCCCCCC------CCCCCCCCSSCGGGHHHHSCSSTTSCCCTHHHHTT
T ss_pred             hhhhhccCceeEEeCCHHHHHHHHHHHHHhCCccCCCCC------CCCCCCCCCCChHHHHhhCCCCccCCccHHHHHhh
Confidence            999988999999999999999999999999998876443      22345667788899999999999999999999999


Q ss_pred             hccCCccccccccccceEEEEEEEECCeEEEEEEeCCccCHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcc
Q 048389          341 IVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANG  420 (566)
Q Consensus       341 l~D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~G~l~~~~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g  420 (566)
                      |+|+++|+|+++.||+++|||||||+|+|||||+|||++++++++|++|||++|++|+||||+|+|||||++|.++|+.|
T Consensus       330 i~D~~~f~E~~~~~g~~iV~G~ari~G~~Vgvian~G~l~~~~a~Kaarfi~~c~~~~iPlv~lvDtpGf~~G~~~E~~G  409 (555)
T 3u9r_B          330 LVDGSEFDEFKALFGTTLVCGFAHLHGYPIAILANNGILFAEAAQKGAHFIELACQRGIPLLFLQNITGFMVGQKYEAGG  409 (555)
T ss_dssp             TSGGGBCEEESTTSSTTEEEEEEEETTEEEEEEEECSSBCHHHHHHHHHHHHHHHHHTCCEEEEEEECCBCCSHHHHHTT
T ss_pred             hcCCceeEEeeccCCCcEEEEEEEECCEEEEEEEeCCccCHHHHHHHHHHHHHHhcCCCCEEEEecCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCCCEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCC
Q 048389          421 IAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEW  500 (566)
Q Consensus       421 ~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~  500 (566)
                      +++++||+++++++++||+|+||+|++||||+|+||++++++|++||||+|+|+|||||++++|++..+++++++.++++
T Consensus       410 i~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~Vmgpegaa~il~~~~~~~~~~~g~~~  489 (555)
T 3u9r_B          410 IAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAERAGQQL  489 (555)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEESSCHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEEcCCHHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999977666667778888


Q ss_pred             chHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHHHHHHHHHHhhCCCCCCCCCCcCCC
Q 048389          501 TKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRKIIGFCISAALNRPVEDTKYGVFRM  566 (566)
Q Consensus       501 ~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~~L~~~L~~~~~~~~~~~~~~~~~~  566 (566)
                      ++++++++++++.++|+++.+||+++++||||+||+|+|||++|+.+|+++.+|+..+++||||||
T Consensus       490 ~~~~~~~~~~~~~~~y~~~~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~~~~~~~~~~~~~g~~~~  555 (555)
T 3u9r_B          490 GVEEEAKIKAPILEQYEHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNAPIEPTAFGVFRM  555 (555)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCBCCGGGHHHHHHHHHHHHTTSCCCCCCCCCCCC
T ss_pred             CcchHHHHHHHHHHHHHHhCCHHHHhhccccCcccChHHHHHHHHHHHHHHhcCCCCCCCCCCcCC
Confidence            888888889999999999999999999999999999999999999999999999999999999998
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Back     alignment and structure
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Back     alignment and structure
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Back     alignment and structure
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} Back     alignment and structure
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Back     alignment and structure
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Back     alignment and structure
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A Back     alignment and structure
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Back     alignment and structure
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} Back     alignment and structure
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Back     alignment and structure
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Back     alignment and structure
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B Back     alignment and structure
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Back     alignment and structure
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Back     alignment and structure
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* Back     alignment and structure
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Back     alignment and structure
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Back     alignment and structure
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Back     alignment and structure
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Back     alignment and structure
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Back     alignment and structure
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Back     alignment and structure
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Back     alignment and structure
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 Back     alignment and structure
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Back     alignment and structure
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Back     alignment and structure
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Back     alignment and structure
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A Back     alignment and structure
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Back     alignment and structure
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Back     alignment and structure
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Back     alignment and structure
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Back     alignment and structure
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Back     alignment and structure
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Back     alignment and structure
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 Back     alignment and structure
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Back     alignment and structure
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Back     alignment and structure
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Back     alignment and structure
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} Back     alignment and structure
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Back     alignment and structure
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Back     alignment and structure
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Back     alignment and structure
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Back     alignment and structure
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Back     alignment and structure
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Back     alignment and structure
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Back     alignment and structure
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* Back     alignment and structure
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Back     alignment and structure
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Back     alignment and structure
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Back     alignment and structure
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Back     alignment and structure
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Back     alignment and structure
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Back     alignment and structure
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Back     alignment and structure
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Back     alignment and structure
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Back     alignment and structure
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Back     alignment and structure
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Back     alignment and structure
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 Back     alignment and structure
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Back     alignment and structure
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Back     alignment and structure
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A Back     alignment and structure
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} Back     alignment and structure
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A Back     alignment and structure
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Back     alignment and structure
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Back     alignment and structure
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Back     alignment and structure
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Back     alignment and structure
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Back     alignment and structure
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Back     alignment and structure
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* Back     alignment and structure
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Back     alignment and structure
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Back     alignment and structure
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} Back     alignment and structure
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Back     alignment and structure
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Back     alignment and structure
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Back     alignment and structure
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Back     alignment and structure
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Back     alignment and structure
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Back     alignment and structure
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Back     alignment and structure
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Back     alignment and structure
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Back     alignment and structure
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Back     alignment and structure
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Back     alignment and structure
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Back     alignment and structure
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Back     alignment and structure
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A Back     alignment and structure
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Back     alignment and structure
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Back     alignment and structure
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 Back     alignment and structure
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Back     alignment and structure
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Back     alignment and structure
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Back     alignment and structure
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Back     alignment and structure
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Back     alignment and structure
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Back     alignment and structure
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Back     alignment and structure
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Back     alignment and structure
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Back     alignment and structure
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Back     alignment and structure
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Back     alignment and structure
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Back     alignment and structure
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Back     alignment and structure
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Back     alignment and structure
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Back     alignment and structure
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Back     alignment and structure
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Back     alignment and structure
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Back     alignment and structure
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 Back     alignment and structure
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A Back     alignment and structure
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Back     alignment and structure
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Back     alignment and structure
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Back     alignment and structure
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Back     alignment and structure
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Back     alignment and structure
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Back     alignment and structure
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Back     alignment and structure
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Back     alignment and structure
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Back     alignment and structure
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Back     alignment and structure
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Back     alignment and structure
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Back     alignment and structure
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 Back     alignment and structure
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Back     alignment and structure
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Back     alignment and structure
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Back     alignment and structure
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Back     alignment and structure
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Back     alignment and structure
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Back     alignment and structure
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Back     alignment and structure
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Back     alignment and structure
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Back     alignment and structure
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Back     alignment and structure
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} Back     alignment and structure
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Back     alignment and structure
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Back     alignment and structure
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Back     alignment and structure
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} Back     alignment and structure
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Back     alignment and structure
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Back     alignment and structure
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Back     alignment and structure
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Back     alignment and structure
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Back     alignment and structure
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Back     alignment and structure
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Back     alignment and structure
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Back     alignment and structure
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Back     alignment and structure
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 Back     alignment and structure
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Back     alignment and structure
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Back     alignment and structure
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Back     alignment and structure
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Back     alignment and structure
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Back     alignment and structure
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 Back     alignment and structure
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Back     alignment and structure
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 Back     alignment and structure
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A Back     alignment and structure
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Back     alignment and structure
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Back     alignment and structure
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A Back     alignment and structure
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Back     alignment and structure
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Back     alignment and structure
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Back     alignment and structure
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Back     alignment and structure
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Back     alignment and structure
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 Back     alignment and structure
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Back     alignment and structure
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Back     alignment and structure
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Back     alignment and structure
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Back     alignment and structure
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1on3a2264 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltra 6e-72
d1pixa3299 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase 5e-71
d1pixa3299 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase 9e-12
d1vrga2264 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase com 2e-70
d2a7sa2271 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase com 2e-69
d1xnya2263 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com 9e-69
d1xnya2263 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase com 8e-07
d1vrga1251 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase compl 3e-63
d1xnya1258 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase comp 2e-62
d2a7sa1258 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase comp 2e-60
d1on3a1253 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltrans 2e-55
d1uyra1333 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla 6e-52
d1pixa2287 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A 1e-51
d1pixa2287 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A 3e-08
d1uyra2 404 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla 5e-51
d1uyra2404 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxyla 1e-04
d2f9yb1263 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase 2e-39
d2f9ya1316 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase c 5e-12
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

 Score =  229 bits (584), Expect = 6e-72
 Identities = 90/266 (33%), Positives = 133/266 (50%), Gaps = 17/266 (6%)

Query: 306 INPEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKI 365
           +NP     +    EL  I P D K+ +D+R VIA+IVD  ++ E K  Y T LVT FA++
Sbjct: 7   VNPN--NDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARV 64

Query: 366 FGQPVGIIG-----NNGILFHESALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANG 420
            G+ VGI+       +G L   ++ K A F+  C    IPLV L ++ GF+ G + E  G
Sbjct: 65  NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGG 124

Query: 421 IAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQ 480
           I + GAKM+ A S A VPK+T+++  ++G    AMC R    + ++ WP+A I+VMG   
Sbjct: 125 IIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEG 184

Query: 481 AAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADT 540
           AA V+ + E            ++ EE                Y + AR   D +IDPADT
Sbjct: 185 AANVIFRKEIKAADDPDAMRAEKIEEY--------QNAFNTPYVAAARGQVDDVIDPADT 236

Query: 541 RKIIGFCISAALNRPVE--DTKYGVF 564
           R+ I   +     +       K+G F
Sbjct: 237 RRKIASALEMYATKRQTRPAKKHGNF 262
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 299 Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 264 Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 271 Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 263 Back     information, alignment and structure
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Length = 251 Back     information, alignment and structure
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Length = 258 Back     information, alignment and structure
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 258 Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Length = 253 Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Length = 287 Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 404 Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Length = 263 Back     information, alignment and structure
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Length = 316 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d1on3a2264 Methylmalonyl-CoA carboxyltransferase (transcarbox 100.0
d1vrga2264 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d2a7sa1258 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1xnya1258 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1xnya2263 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1vrga1251 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1pixa3299 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 100.0
d2a7sa2271 Propionyl-CoA carboxylase complex B subunit, PccB 100.0
d1on3a1253 Methylmalonyl-CoA carboxyltransferase (transcarbox 100.0
d1pixa2287 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 100.0
d1uyra2404 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 100.0
d2f9yb1263 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
d1uyra1333 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 100.0
d2f9ya1316 Acetyl-coenzyme A carboxylase carboxyl transferase 100.0
d2a7sa2271 Propionyl-CoA carboxylase complex B subunit, PccB 99.95
d1xnya2263 Propionyl-CoA carboxylase complex B subunit, PccB 99.95
d1on3a2264 Methylmalonyl-CoA carboxyltransferase (transcarbox 99.94
d1vrga2264 Propionyl-CoA carboxylase complex B subunit, PccB 99.94
d1pixa3299 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 99.94
d2f9yb1263 Acetyl-coenzyme A carboxylase carboxyl transferase 99.93
d1pixa2287 Glutaconyl-CoA decarboxylase A subunit {Acidaminoc 99.91
d2f9ya1316 Acetyl-coenzyme A carboxylase carboxyl transferase 99.91
d1xnya1258 Propionyl-CoA carboxylase complex B subunit, PccB 99.88
d1on3a1253 Methylmalonyl-CoA carboxyltransferase (transcarbox 99.87
d1vrga1251 Propionyl-CoA carboxylase complex B subunit, PccB 99.86
d2a7sa1258 Propionyl-CoA carboxylase complex B subunit, PccB 99.86
d1uyra2404 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 99.79
d1uyra1333 Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc 99.35
d1sg4a1249 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 97.72
d2a7ka1230 Carbapenem biosynthes protein CarB {Pectobacterium 97.39
d2f6qa1245 Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( 97.38
d2fw2a1258 Chromodomain protein CDY2A {Human (Homo sapiens) [ 97.28
d1ef8a_261 Methylmalonyl CoA decarboxylase {Escherichia coli 97.21
d2f6qa1245 Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( 97.21
d1uiya_253 Enoyl-CoA hydratase (crotonase) {Thermus thermophi 97.21
d1uiya_253 Enoyl-CoA hydratase (crotonase) {Thermus thermophi 97.14
d1ef8a_261 Methylmalonyl CoA decarboxylase {Escherichia coli 97.1
d1wz8a1263 Probable enoyl-CoA hydratase TTHA0218 {Thermus the 97.02
d2a7ka1230 Carbapenem biosynthes protein CarB {Pectobacterium 97.0
d1wdka4310 Fatty oxidation complex alpha subunit, N-terminal 96.99
d1y7oa1192 Clp protease, ClpP subunit {Streptococcus pneumoni 96.97
d2f6ia1190 Clp protease, ClpP subunit {Plasmodium falciparum 96.96
d1dcia_275 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 96.95
d2fw2a1258 Chromodomain protein CDY2A {Human (Homo sapiens) [ 96.95
d1szoa_249 6-oxo camphor hydrolase {Rhodococcus erythropolis 96.91
d1q52a_297 Naphthoate synthase MenB {Mycobacterium tuberculos 96.9
d1pjha_266 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 96.89
d1yg6a1183 Clp protease, ClpP subunit {Escherichia coli [TaxI 96.87
d1q52a_297 Naphthoate synthase MenB {Mycobacterium tuberculos 96.86
d1tg6a1193 Clp protease, ClpP subunit {Human (Homo sapiens), 96.8
d2cbya1179 Clp protease, ClpP subunit {Mycobacterium tubercul 96.8
d1hzda_266 AUH protein {Human (Homo sapiens) [TaxId: 9606]} 96.7
d1nzya_269 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., 96.68
d1hzda_266 AUH protein {Human (Homo sapiens) [TaxId: 9606]} 96.51
d1sg4a1249 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 96.48
d1nzya_269 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., 96.44
d1wdka4310 Fatty oxidation complex alpha subunit, N-terminal 96.42
d1wz8a1263 Probable enoyl-CoA hydratase TTHA0218 {Thermus the 96.41
d1mj3a_260 Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve 96.35
d1mj3a_260 Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve 96.16
d1dcia_275 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 96.01
d1pjha_266 Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso 95.42
d1szoa_249 6-oxo camphor hydrolase {Rhodococcus erythropolis 95.06
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=100.00  E-value=4.7e-64  Score=504.40  Aligned_cols=250  Identities=36%  Similarity=0.563  Sum_probs=227.1

Q ss_pred             CCCCCCCCChHHHhhhcccCCCCCCCHHHHhhhhccCCccccccccccceEEEEEEEECCeEEEEEEeC-----CccCHH
Q 048389          308 PEYKEPLYDVKELYSIAPADLKQSFDIRSVIARIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNN-----GILFHE  382 (566)
Q Consensus       308 ~~~~~p~~~~~~l~~~~p~~~~~~~d~r~ii~~l~D~~sf~E~~~~~g~~vv~G~arI~G~~Vgvvan~-----G~l~~~  382 (566)
                      .++.+|.++.++|++++|.+++++||||++|++|+|+++|+|+++.||+++|||||||+|+||||||||     |+|+++
T Consensus         7 ~~p~~~~~~~~~l~~iip~~~~~~yd~r~~i~~~~D~~~f~E~~~~~g~~~vtg~ari~G~~vgvian~~~~~~G~~~~~   86 (264)
T d1on3a2           7 VNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDIN   86 (264)
T ss_dssp             CSCCCCCCCCGGGGGTSCSSTTCCCCTHHHHHHHSGGGCEEEESTTSSTTEEEEEEEETTEEEEEEEECTTSGGGCBCHH
T ss_pred             CCCCCCCCChHHHHhcCCCCCCCCCCHHHHHHHhccCceeeeecCCCcCCEEEEEEEEecceEEEEeccchhcccccChH
Confidence            444556666678999999999999999999999999999999999999999999999999999999996     999999


Q ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHhcchHHHHHHHHHHHHcCCCCEEEEEcCCCCchhhhhhccCCCCC
Q 048389          383 SALKGAHFIELCTQRKIPLVFLQNITGFMVGSRSEANGIAKAGAKMVMAVSCAKVPKVTIIVGGSFGAGNYAMCGRAYSP  462 (566)
Q Consensus       383 ~a~K~ar~i~l~~~~~iPlV~l~dt~G~~~g~~~E~~g~~~~~a~~~~a~~~a~vP~isvi~g~~~Ggg~~am~~~~~~~  462 (566)
                      +++|++|||++|++||||||+|+|||||++|.++|+.|+++++|++++++++++||+||||+|++||+|+++||++++++
T Consensus        87 ~a~Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~  166 (264)
T d1on3a2          87 ASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGA  166 (264)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecCceeeccCHHHHHHHHhhhhhhhhhhcCCCCchHHHHHHHHHHHHHHHhhCCHHHHHhCcccceecCchhhHH
Q 048389          463 NFMFLWPNARISVMGGAQAAGVLSQVEKDKKKKQGIEWTKQEEEMFKAKVVEAYEKEGNAYYSTARLWDDGIIDPADTRK  542 (566)
Q Consensus       463 d~~~A~p~A~i~vmg~e~aa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aa~~g~iD~II~p~~tR~  542 (566)
                      |++||||+|+++|||||+++.++++.+..+.       ++ ..+...+++.+++++.++||+++++|+||+||||+|||+
T Consensus       167 d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~-------~~-~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~  238 (264)
T d1on3a2         167 DAVYAWPSAEIAVMGAEGAANVIFRKEIKAA-------DD-PDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRR  238 (264)
T ss_dssp             SEEEECTTCEEESSCHHHHHHHHTHHHHHHS-------SC-HHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHH
T ss_pred             hheeeHHhhHhhhccHHHHHHHHHhhhhhhh-------hh-hhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHH
Confidence            9999999999999999999999997654321       11 112233455566666799999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCC--CCCCCcCC
Q 048389          543 IIGFCISAALNRPVE--DTKYGVFR  565 (566)
Q Consensus       543 ~L~~~L~~~~~~~~~--~~~~~~~~  565 (566)
                      +|+.+|+++.+++..  .++|||||
T Consensus       239 ~L~~aLe~~~~k~~~~p~kkhGn~P  263 (264)
T d1on3a2         239 KIASALEMYATKRQTRPAKKHGNFP  263 (264)
T ss_dssp             HHHHHHHHGGGCCCCCCCCSCCCCC
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCC
Confidence            999999999987653  57999998
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} Back     information, alignment and structure
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Back     information, alignment and structure
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Back     information, alignment and structure
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Back     information, alignment and structure