Citrus Sinensis ID: 048445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPPTAENGRCE
Secondary Structure (PSIPRED)
cccEEEEEcccEEEEEEcccccccccccccccccccccccccEEEEEccccHHEEcHHHHHHHHHHHccEEcccccccccccEEEEccccccEEEEcccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEEEEEcccccccccccccccccccccccccEEEEEcccccEHHcHHHHHHHHHHcccEEEcccccccccEEEEEccccccEEEEcccHHHHccEEEEEEEEEEccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
msgvwvfdkngvarliqnptkesferkepvqpgtatapgarprvlvflptnqVIRSYAELEQRLTELGwsryhdnssssnrllqfhksedsahlislptnfanfrsiHMYDIVVKnrsffevrdlimspptaengrce
Flexible Loop (DISEMBL)
msgvwvfdkngvarliqnptkesferkepvqpgtatapgarprvLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFevrdlimspptaengrce
Low Complexity Region (SEG)
MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPPTAENGRCE
Disordered region (IsUnstruct)
***VWVFDKNGVARLI**************************RVLVFLPTNQVIRSYAELEQRLTELGW***********************HLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLI************
Disordered Region (DISOPRED)
MSGVWVFDKNGVARLIQN**************************LVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSP*********
Disordered Region (DISEMBL)
MSGVWVFDKNGVARLIQNPTK***************APGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPP********
Disordered Region (DISPRO)
*SGVWVFDKNGVARLIQNP********************ARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPP********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAELEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFEVRDLIMSPPTAENGRCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q9LGE3	109	Flowering-promoting facto	yes	no	0.782	0.990	0.532	5e-26
Q5Q0B3	124	Flowering-promoting facto	no	no	0.891	0.991	0.484	3e-25
O24340	110	Flowering-promoting facto	N/A	no	0.782	0.981	0.516	9e-25
O23624	110	Flowering-promoting facto	no	no	0.782	0.981	0.508	2e-24
Q9LXB5	112	Flowering-promoting facto	no	no	0.804	0.991	0.48	1e-23
Q8LR63	127	Flowering-promoting facto	no	no	0.891	0.968	0.449	1e-22
Q0E1D7	122	Flowering-promoting facto	no	no	0.811	0.918	0.459	1e-22
A3BNA1	105	Flowering-promoting facto	no	no	0.724	0.952	0.419	5e-20
Q0JEF5	118	Flowering-promoting facto	no	no	0.840	0.983	0.409	5e-19

>sp|Q9LGE3|FLP1_ORYSJ Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica GN=RAA1 PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++         K+    GTA A G R + LV  P+ QV+ SYA L
Sbjct: 1   MSGVWVF-KNGVVRLVE---------KQQATAGTAVA-GGRRKALVHTPSGQVVSSYAAL 49

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E RLT LGW RY+++ S    L QFHK   S  LISLP +F+ F S+HMYDIVVKNR  F
Sbjct: 50  EARLTALGWERYYEDPS----LFQFHK-RGSLDLISLPADFSAFSSVHMYDIVVKNRDSF 104

Query: 121 EVRD 124
            V D
Sbjct: 105 RVVD 108

GTP-binding protein that functions in the development of rice root systems, which are mediated by auxin. Acts as a cell cycle regulator during root development. Proteasome-mediated degradation of the protein is necessary for the transition of metaphase to anaphase in mitosis.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Q0B3|FLP1_ARATH Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana GN=FLP1 PE=2 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPG-ARPRVLVFLPTNQVIRSYAE 59
           MSGVWVF+KNGV RL++NP  +S                  R ++LV LP+++V+ SY  
Sbjct: 1   MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query: 60  LEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSF 119
           LE+ L  LGW RY+ +  +++ LLQFHK   S  LISLP +F+ F SIHMYDIVVKN + 
Sbjct: 61  LEKILKNLGWERYY-SGDNTDHLLQFHK-RTSIDLISLPRDFSKFNSIHMYDIVVKNPNV 118

Query: 120 FEVRDL 125
           F VRD+
Sbjct: 119 FHVRDM 124

Modulates the competence to flowering of apical meristems.

Arabidopsis thaliana (taxid: 3702)

>sp|O24340|FPF1_SINAL Flowering-promoting factor 1 OS=Sinapis alba GN=FPF1 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP           Q G  T   +R +V+V+LPT +VI SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPN----------QSGGDT--NSRRKVMVYLPTGEVISSYSTL 47

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY     +   LLQFHK   S  LISLP +F  F S++MYDIVVKN ++F
Sbjct: 48  EQILRSLGWERYFGGGDTD--LLQFHK-RSSIDLISLPKDFTKFSSVYMYDIVVKNPNYF 104

Query: 121 EVRD 124
            VRD
Sbjct: 105 HVRD 108

Modulates the competence to flowering of apical meristems.

Sinapis alba (taxid: 3728)

>sp|O23624|FPF1_ARATH Flowering-promoting factor 1 OS=Arabidopsis thaliana GN=FPF1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 78/124 (62%), Gaps = 16/124 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP           Q G+ T    R +V+V+LPT +V+ SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPN----------QSGSDTQ--NRRKVMVYLPTGEVVSSYSTL 47

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY     +   LLQFHK   S  LISLP +F  F S++MYDIVVKN ++F
Sbjct: 48  EQILQSLGWERYFGGGDTD--LLQFHK-RSSIDLISLPRDFTKFNSVYMYDIVVKNPNYF 104

Query: 121 EVRD 124
            VRD
Sbjct: 105 HVRD 108

Modulates the competence to flowering of apical meristems. Involved in a GA-dependent response in apical meristems during the transition to flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXB5|FLP2_ARATH Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana GN=FLP2 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 14/125 (11%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF+ NGV RL++NP +           G +T    R  VLV+LPT + + SY+ L
Sbjct: 1   MSGVWVFN-NGVIRLVENPNQSG---------GVSTQSHGRRNVLVYLPTGEAVSSYSSL 50

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ L  LGW RY    S    L+Q+HK   S  LISLP +F+ F S++MYDIVVKN + F
Sbjct: 51  EQILRSLGWERYFSGDSD---LIQYHK-RSSIDLISLPRDFSKFNSVYMYDIVVKNPNSF 106

Query: 121 EVRDL 125
            VRD 
Sbjct: 107 HVRDF 111

Modulates the competence to flowering of apical meristems.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LR63|FLP2_ORYSJ Flowering-promoting factor 1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0933500 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 6/129 (4%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF +NGV +L++NP   +         G     G R + L+ +PT +V+ SYA L
Sbjct: 1   MSGVWVF-RNGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASL 59

Query: 61  EQRLTELGWSRYHDNSSSSNR----LLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKN 116
           E++L  LGW RY+     +      +LQFHK   S  LISLP +F+ F S+HMYDIVVKN
Sbjct: 60  ERKLAALGWERYYSGGGGAAAAAAMMLQFHK-RSSVDLISLPKDFSQFGSVHMYDIVVKN 118

Query: 117 RSFFEVRDL 125
           R  F V D+
Sbjct: 119 RDAFRVIDV 127

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0E1D7|FLP3_ORYSJ Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 12/124 (9%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           M+GVWVF K+G+ R ++NP  E                G R +VLV +P+ +V+ SY  L
Sbjct: 1   MAGVWVF-KDGIVRRVENPGSEE------SSSAGDGGGGGRRKVLVHVPSGEVVASYEVL 53

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E+RL ELGW RY  +      LLQFH+   + HLIS+P +F+ F+ +HMYDIVVK R+ F
Sbjct: 54  ERRLRELGWERYLTDPC----LLQFHQ-RSTVHLISVPRDFSKFKLVHMYDIVVKTRNVF 108

Query: 121 EVRD 124
           EVRD
Sbjct: 109 EVRD 112

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A3BNA1|FLP5_ORYSJ Flowering-promoting factor 1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os07g0671000 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 24/124 (19%)

Query: 2   SGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAELE 61
            GVWVF  NGV  L +  T                      + LV + T++VIRS   LE
Sbjct: 4   GGVWVFRNNGVMELEEQATSR--------------------KALVHVATSEVIRSTEALE 43

Query: 62  QRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFFE 121
           +RL  LGW RY+++ ++    LQ H+ + SA LIS+P +F+ FRS HMYD+VVKNR  F+
Sbjct: 44  RRLGALGWERYYEDRAT----LQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFK 99

Query: 122 VRDL 125
           V DL
Sbjct: 100 VVDL 103

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JEF5|FLP4_ORYSJ Flowering-promoting factor 1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os04g0282400 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 16/132 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           M+GVWVF+   V R          + + P +       G   +VLV +P+++V+ SY  L
Sbjct: 1   MAGVWVFEDGMVRRA---------DSEAPSRGRGVGGGGGGGKVLVHVPSSEVVTSYEVL 51

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E+RL ELGW RY ++      LLQFH+   + HLIS+P +F+  + +HMYD+VVK R+ F
Sbjct: 52  ERRLRELGWERYLNDPC----LLQFHQ-RSTVHLISVPRDFSRLKLVHMYDVVVKTRNVF 106

Query: 121 EVRD--LIMSPP 130
           EVRD     SPP
Sbjct: 107 EVRDAATTASPP 118

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
356547251	137	PREDICTED: uncharacterized protein LOC10	0.905	0.912	0.771	9e-52
255581252	128	conserved hypothetical protein [Ricinus	0.891	0.960	0.782	9e-51
224106471	122	predicted protein [Populus trichocarpa]	0.884	1.0	0.782	2e-50
449450740	131	PREDICTED: flowering-promoting factor 1-	0.920	0.969	0.759	3e-50
225434929	123	PREDICTED: uncharacterized protein LOC10	0.884	0.991	0.758	3e-49
356557433	166	PREDICTED: uncharacterized protein LOC10	0.760	0.632	0.747	4e-41
255551723	112	conserved hypothetical protein [Ricinus	0.811	1.0	0.536	2e-28
224110558	112	predicted protein [Populus trichocarpa]	0.811	1.0	0.544	7e-28
224123132	112	predicted protein [Populus trichocarpa]	0.811	1.0	0.536	8e-28
356521865	109	PREDICTED: uncharacterized protein LOC10	0.789	1.0	0.528	2e-26

>gi|356547251|ref|XP_003542029.1| PREDICTED: uncharacterized protein LOC100789901 [Glycine max]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 111/127 (87%), Gaps = 2/127 (1%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVFDK GVARLI NPT+ESFE+KEP QPGTATAPGARPRVLV+LP+NQVIRSYAEL
Sbjct: 1   MSGVWVFDKKGVARLITNPTRESFEQKEPRQPGTATAPGARPRVLVYLPSNQVIRSYAEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQRLTELGW+RY D+  S   L+QFH+S+ S+HLISLP NF+NF+  H YDIVVKNRSFF
Sbjct: 61  EQRLTELGWTRYRDSDRSD--LIQFHRSDTSSHLISLPKNFSNFKHFHFYDIVVKNRSFF 118

Query: 121 EVRDLIM 127
           +VRD  M
Sbjct: 119 QVRDPTM 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581252|ref|XP_002531438.1| conserved hypothetical protein [Ricinus communis] gi|223528957|gb|EEF30950.1| conserved hypothetical protein [Ricinus communis]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 108/124 (87%), Gaps = 1/124 (0%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVW+FDK GVARLI NPT+ESFE+KEP  PGTATAPGARPRVLV+LPTNQVIRSY+EL
Sbjct: 1   MSGVWIFDKKGVARLITNPTRESFEQKEPPSPGTATAPGARPRVLVYLPTNQVIRSYSEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQRL ELGW+RY    S  N L+QFHKS++SAHLISLP  FANF+S HMYDIVVKN SFF
Sbjct: 61  EQRLIELGWTRY-SGCSQHNNLIQFHKSDNSAHLISLPNRFANFKSFHMYDIVVKNHSFF 119

Query: 121 EVRD 124
           EVR+
Sbjct: 120 EVRE 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106471|ref|XP_002314177.1| predicted protein [Populus trichocarpa] gi|222850585|gb|EEE88132.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/124 (78%), Positives = 111/124 (89%), Gaps = 2/124 (1%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVW+FDKNGVARLI NPT+ESFE+KEP+ PGTATAPGARPRVLV+LP N VIRSY EL
Sbjct: 1   MSGVWIFDKNGVARLITNPTRESFEQKEPLHPGTATAPGARPRVLVYLPANHVIRSYTEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQRL ELGW+RY+ NS+  N LLQFHKS++SAHLISLP +F +F+ +HMYDIVVKNRSFF
Sbjct: 61  EQRLAELGWTRYY-NSNQPN-LLQFHKSDNSAHLISLPRDFDSFKPLHMYDIVVKNRSFF 118

Query: 121 EVRD 124
           EVRD
Sbjct: 119 EVRD 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450740|ref|XP_004143120.1| PREDICTED: flowering-promoting factor 1-like [Cucumis sativus] gi|449518336|ref|XP_004166198.1| PREDICTED: flowering-promoting factor 1-like [Cucumis sativus]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 109/129 (84%), Gaps = 2/129 (1%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARLI NPT+ESFE K+P  PGTATAPGARPRVLV+LPTNQVIRSYAEL
Sbjct: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPHPGTATAPGARPRVLVYLPTNQVIRSYAEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQRL ELGW+RY + +     LLQFH+S DSAHLISLP +FA F+ +HMYDIVVKNR FF
Sbjct: 61  EQRLAELGWTRYPNLAEPD--LLQFHRSHDSAHLISLPKSFAKFKPMHMYDIVVKNRHFF 118

Query: 121 EVRDLIMSP 129
           +VRD   SP
Sbjct: 119 QVRDPTSSP 127

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434929|ref|XP_002280961.1| PREDICTED: uncharacterized protein LOC100257008 [Vitis vinifera] gi|147846612|emb|CAN81644.1| hypothetical protein VITISV_010795 [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 109/124 (87%), Gaps = 2/124 (1%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARL+ NPT+ESFE+KEP  PGTATAPGARPR+LV+LP NQVIRSY EL
Sbjct: 1   MSGVWVFDKNGVARLVTNPTRESFEQKEPPFPGTATAPGARPRLLVYLPENQVIRSYTEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQRL +LGWSRYH+    S  L+QFHKS++S+HL+SLP +FANF+S H YDIVVKNRSFF
Sbjct: 61  EQRLNQLGWSRYHNYQHPS--LVQFHKSDNSSHLLSLPKSFANFKSFHFYDIVVKNRSFF 118

Query: 121 EVRD 124
           EVR+
Sbjct: 119 EVRE 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557433|ref|XP_003547020.1| PREDICTED: uncharacterized protein LOC100783038 [Glycine max]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 94/107 (87%), Gaps = 2/107 (1%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVFDK GVARLI NPT+ESFE+KEP QPGTATAPGARPRVLV+LP+NQVIRSY EL
Sbjct: 1   MSGVWVFDKKGVARLITNPTRESFEQKEPRQPGTATAPGARPRVLVYLPSNQVIRSYTEL 60

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSI 107
           EQRLTELGW+RYHD+  S   L+QFH+S+ S+HLISLP +F  F+++
Sbjct: 61  EQRLTELGWTRYHDSDHSD--LIQFHRSDTSSHLISLPKHFLQFQAL 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551723|ref|XP_002516907.1| conserved hypothetical protein [Ricinus communis] gi|223543995|gb|EEF45521.1| conserved hypothetical protein [Ricinus communis]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 13/125 (10%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP  ES +       G+     AR +VLV  P+N++I SY+ L
Sbjct: 1   MSGVWVF-KNGVVRLVENPGAESLD-------GSRQGSTARRKVLVHTPSNEIITSYSVL 52

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E +L  LGW RY+D+      LLQFHK   + HLISLP +F+ F+S+HMYDIVVKNR+ F
Sbjct: 53  EHKLYSLGWERYYDDPD----LLQFHK-RSTVHLISLPKDFSKFKSMHMYDIVVKNRNMF 107

Query: 121 EVRDL 125
           EVRD+
Sbjct: 108 EVRDM 112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110558|ref|XP_002315557.1| predicted protein [Populus trichocarpa] gi|222864597|gb|EEF01728.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 84/125 (67%), Gaps = 13/125 (10%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP  ES +       G+      R +VLV  P+N+VI SYA L
Sbjct: 1   MSGVWVF-KNGVVRLVENPGAESLD-------GSRQGSSMRRKVLVHSPSNEVITSYAVL 52

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E++L  LGW RY+D+      LLQFHK   + HLISLP +F   RS+HMYDIVVKNR+ F
Sbjct: 53  ERKLYSLGWERYYDDPD----LLQFHK-RSTVHLISLPKDFNKLRSMHMYDIVVKNRNMF 107

Query: 121 EVRDL 125
           EVRD+
Sbjct: 108 EVRDM 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123132|ref|XP_002330346.1| predicted protein [Populus trichocarpa] gi|222871550|gb|EEF08681.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 85/125 (68%), Gaps = 13/125 (10%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP  ES +       G+      R +VLV  P+N+VI SYA L
Sbjct: 1   MSGVWVF-KNGVVRLVENPGAESLD-------GSRQGSNTRRKVLVHTPSNEVITSYAVL 52

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           E++L+ LGW RY+D+      LLQFH    + HLISLP +F  F+S+HMYDIVVKNR+ F
Sbjct: 53  ERKLSSLGWERYYDDPD----LLQFH-IRSTVHLISLPKDFNKFKSMHMYDIVVKNRNMF 107

Query: 121 EVRDL 125
           EVRD+
Sbjct: 108 EVRDM 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521865|ref|XP_003529571.1| PREDICTED: uncharacterized protein LOC100782856 [Glycine max]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 16/125 (12%)

Query: 1   MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL++NP  E+ E           + G R +VLV   +N+VI SYA L
Sbjct: 1   MSGVWVF-KNGVVRLVENPGGEAVE----------GSRGGRRKVLVHRASNEVITSYAVL 49

Query: 61  EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
           EQ+L  LGW RY+D++     LLQFHK   + HLISLP +F  F+ +HMYDIVVKN++ F
Sbjct: 50  EQKLYSLGWERYYDDAD----LLQFHK-RSTVHLISLPRDFNKFKPMHMYDIVVKNKNAF 104

Query: 121 EVRDL 125
           EVRD+
Sbjct: 105 EVRDM 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2128206	124	FLP1 "AT4G31380" [Arabidopsis	0.891	0.991	0.5	4.5e-27
UNIPROTKB|Q9LGE3	109	RAA1 "Flowering-promoting fact	0.782	0.990	0.532	2.6e-24
TAIR|locus:2149368	110	FPF1 "AT5G24860" [Arabidopsis	0.782	0.981	0.508	1.1e-23
TAIR|locus:1006230424	112	AT5G10625 "AT5G10625" [Arabido	0.797	0.982	0.483	2.3e-23

TAIR|locus:2128206 FLP1 "AT4G31380" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 63/126 (50%), Positives = 84/126 (66%)

Query:     1 MSGVWVFDKNGVARLIQNPTKESF-ERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAE 59
             MSGVWVF+KNGV RL++NP  +S  +  E    G       R ++LV LP+++V+ SY  
Sbjct:     1 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query:    60 LEQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSF 119
             LE+ L  LGW RY+ +  +++ LLQFHK   S  LISLP +F+ F SIHMYDIVVKN + 
Sbjct:    61 LEKILKNLGWERYY-SGDNTDHLLQFHK-RTSIDLISLPRDFSKFNSIHMYDIVVKNPNV 118

Query:   120 FEVRDL 125
             F VRD+
Sbjct:   119 FHVRDM 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|Q9LGE3 RAA1 "Flowering-promoting factor 1-like protein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 66/124 (53%), Positives = 78/124 (62%)

Query:     1 MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
             MSGVWVF KNGV RL++         K+    GTA A G R + LV  P+ QV+ SYA L
Sbjct:     1 MSGVWVF-KNGVVRLVE---------KQQATAGTAVA-GGRRKALVHTPSGQVVSSYAAL 49

Query:    61 EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
             E RLT LGW RY+++ S    L QFHK   S  LISLP +F+ F S+HMYDIVVKNR  F
Sbjct:    50 EARLTALGWERYYEDPS----LFQFHK-RGSLDLISLPADFSAFSSVHMYDIVVKNRDSF 104

Query:   121 EVRD 124
              V D
Sbjct:   105 RVVD 108

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IDA

GO:0045841 "negative regulation of mitotic metaphase/anaphase transition" evidence=IDA

GO:2000280 "regulation of root development" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

TAIR|locus:2149368 FPF1 "AT5G24860" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 63/124 (50%), Positives = 78/124 (62%)

Query:     1 MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
             MSGVWVF KNGV RL++NP           Q G+ T    R +V+V+LPT +V+ SY+ L
Sbjct:     1 MSGVWVF-KNGVIRLVENPN----------QSGSDTQN--RRKVMVYLPTGEVVSSYSTL 47

Query:    61 EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
             EQ L  LGW RY     +   LLQFHK   S  LISLP +F  F S++MYDIVVKN ++F
Sbjct:    48 EQILQSLGWERYFGGGDTD--LLQFHK-RSSIDLISLPRDFTKFNSVYMYDIVVKNPNYF 104

Query:   121 EVRD 124
              VRD
Sbjct:   105 HVRD 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IGI

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:1006230424 AT5G10625 "AT5G10625" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 60/124 (48%), Positives = 76/124 (61%)

Query:     1 MSGVWVFDKNGVARLIQNPTKESFERKEPVQPGTATAPGARPRVLVFLPTNQVIRSYAEL 60
             MSGVWVF+ NGV RL++NP +           G +T    R  VLV+LPT + + SY+ L
Sbjct:     1 MSGVWVFN-NGVIRLVENPNQSG---------GVSTQSHGRRNVLVYLPTGEAVSSYSSL 50

Query:    61 EQRLTELGWSRYHDNSSSSNRLLQFHKSEDSAHLISLPTNFANFRSIHMYDIVVKNRSFF 120
             EQ L  LGW RY    S    L+Q+HK   S  LISLP +F+ F S++MYDIVVKN + F
Sbjct:    51 EQILRSLGWERYFSGDSD---LIQYHK-RSSIDLISLPRDFSKFNSVYMYDIVVKNPNSF 106

Query:   121 EVRD 124
              VRD
Sbjct:   107 HVRD 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       138   0.00091  102 3  11 22  0.43    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.57u 0.12s 15.69t   Elapsed:  00:00:01
  Total cpu time:  15.57u 0.12s 15.69t   Elapsed:  00:00:01
  Start:  Mon May 20 23:11:32 2013   End:  Mon May 20 23:11:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LGE3	FLP1_ORYSJ	No assigned EC number	0.5322	0.7826	0.9908	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IX.4210.1 hypothetical protein (122 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00