Citrus Sinensis ID: 048461

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MSLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSLQ
ccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEcccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccHHHHHHHccccccccccccccccccccEEEEEEcccccHHccccccEEEEEccccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcc
cccEEccccHHEEEEHHHHHHHcccHHHcccccccHHHHHHHHcccccccccccHHHHHccccccHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccEEEEccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHHHcccccccccccccccccccEEEEEEEEcccccEHccccEEEEEEcccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccc
mslrfcnshslyhLLLVPVIFCSISAIYAkanedttirtmeafsgypihesnsFVTNLVSSLSVDTETLQKQIDElstfsdtpapsvtrvLHTENDVLARSYIKNlmgisglsvREDAVGNIygeissssrgvwigNEAELAsvatgshidaipysgkydgvtGVLGALEAINVLKSRLLAGIESLAKDLtsivdgknisfLDAARsagyakehnDLSSVFLKKGSYFAFVELHIeqgpilekegtsigIVTAiaapasikadfegtgghagavlmpnrnDAGLAAAELALAVEKHVlesgsidtvgtvgilelhpgainsipiksqleigyshkpeeyascedMENGVKVLALTLAKLSLQ
MSLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDElstfsdtpapsvtrvLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEissssrgvwIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSLQ
MSLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDaglaaaelalaVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSLQ
***RFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTET******************VTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLA*****
*******SHSLYHLLLVPVIFCSISAIYA**********************************VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLS**
MSLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSLQ
*SLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSL*
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLRFCNSHSLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLAKLSLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q57051411 Uncharacterized hydrolase yes no 0.687 0.605 0.323 8e-29
Q53389409 N-carbamoyl-L-amino acid N/A no 0.693 0.613 0.316 5e-27
Q01264414 Hydantoin utilization pro N/A no 0.707 0.618 0.303 7e-27
P77425411 Allantoate amidohydrolase N/A no 0.748 0.659 0.284 2e-26
P37113409 N-carbamoyl-L-amino acid N/A no 0.693 0.613 0.312 3e-26
O32149412 Allantoate amidohydrolase yes no 0.690 0.606 0.312 9e-22
O49434525 Allantoate deiminase, chl no no 0.657 0.453 0.287 2e-20
A0QZE3 438 Putative hydrolase MSMEG_ no no 0.640 0.529 0.269 1e-12
>sp|Q57051|Y588_HAEIN Uncharacterized hydrolase HI_0588 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0588 PE=1 SV=1 Back     alignment and function desciption
 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 143/291 (49%), Gaps = 42/291 (14%)

Query: 62  LSVDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGN 121
           +S++   +Q  I++L+  S  P   +TR+  TE D  A + I  L     LS+R D++GN
Sbjct: 1   MSINLNRVQNLIEKLAFISSVPN-ELTRLAFTEEDEKAHNMIIELCKEYDLSIRRDSIGN 59

Query: 122 IYGEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAI------NV- 174
           ++   +        G E  L +VA GSHID +  +GK+DG  G +  LE +      N+ 
Sbjct: 60  LFIRKA--------GKEDFLPAVAFGSHIDTVVNAGKFDGPLGSVAGLEILLQLCEQNIQ 111

Query: 175 ----------------------LKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAK 212
                                 L S+++ GI +  K L+S+ D +     +A    G   
Sbjct: 112 TRYPLELIIFTCEESSRFNFATLGSKVMCGIVNQEK-LSSLRDKQGKGLSEAMAEVGM-- 168

Query: 213 EHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAG 272
             N ++        +  F ELHIEQGP LE EG +IG+VT IAAP       +G   H+G
Sbjct: 169 NFNLVNQAKRDAKEFKCFFELHIEQGPRLENEGKTIGVVTGIAAPIRAIVKIKGQADHSG 228

Query: 273 AVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIP 323
           A  M  R+DA L  +EL+LA+E+  +++G   TV TVG +   PG +N +P
Sbjct: 229 ATAMHYRHDALLGGSELSLAIERAAIQAGH-STVATVGNITAKPGVMNVVP 278

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 3EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q53389|AMAB2_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus stearothermophilus GN=amaB PE=1 SV=1 Back     alignment and function description
>sp|Q01264|HYUC_PSESN Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1 Back     alignment and function description
>sp|P77425|ALLC_ECOLI Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1 Back     alignment and function description
>sp|P37113|AMAB1_GEOSE N-carbamoyl-L-amino acid hydrolase OS=Geobacillus stearothermophilus GN=amaB PE=3 SV=2 Back     alignment and function description
>sp|O32149|ALLC_BACSU Allantoate amidohydrolase OS=Bacillus subtilis (strain 168) GN=pucF PE=2 SV=1 Back     alignment and function description
>sp|O49434|AAH_ARATH Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=1 SV=2 Back     alignment and function description
>sp|A0QZE3|Y3995_MYCS2 Putative hydrolase MSMEG_3995/MSMEI_3903 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3995 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
255551929349 N-carbamoyl-L-amino acid hydrolase, puta 0.864 0.896 0.706 1e-121
225432949 474 PREDICTED: N-carbamoyl-L-amino acid hydr 0.817 0.624 0.687 1e-114
224107899442 predicted protein [Populus trichocarpa] 0.781 0.640 0.712 1e-113
357441031 499 N-carbamoyl-L-amino acid hydrolase [Medi 0.875 0.635 0.593 1e-113
297737174441 unnamed protein product [Vitis vinifera] 0.781 0.641 0.699 1e-112
449432610 474 PREDICTED: uncharacterized hydrolase HI_ 0.839 0.641 0.663 1e-112
356576493460 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.834 0.656 0.638 1e-111
363807862 464 uncharacterized protein LOC100797579 pre 0.776 0.605 0.676 1e-110
297795055 477 hypothetical protein ARALYDRAFT_494642 [ 0.809 0.614 0.669 1e-109
22327548 476 ureidoglycolate amidohydrolase [Arabidop 0.809 0.615 0.672 1e-109
>gi|255551929|ref|XP_002517009.1| N-carbamoyl-L-amino acid hydrolase, putative [Ricinus communis] gi|223543644|gb|EEF45172.1| N-carbamoyl-L-amino acid hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/351 (70%), Positives = 272/351 (77%), Gaps = 38/351 (10%)

Query: 10  SLYHLLLVPVIFCSISAIYAKANEDTTIRTMEAFSGYPIHESNSFVTNLVSSLSVDTETL 69
           SL    L  ++  SISAI A+ N+D    TMEAFSGYPIHE +  + +  SSLSVDT+TL
Sbjct: 2   SLIRFSLPLLLLHSISAILAQNNDDPITTTMEAFSGYPIHELSHSIAS-PSSLSVDTQTL 60

Query: 70  QKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSS 129
           QKQIDELS FSDTPAPSVTRVL++E DVLAR YIKNLMG+SGLSVREDAVGNI+G     
Sbjct: 61  QKQIDELSAFSDTPAPSVTRVLYSEKDVLARRYIKNLMGLSGLSVREDAVGNIFGR---- 116

Query: 130 SRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------------- 176
               W G+E ELA+VATGSHIDAIPYSGKYDGV GVLGA+EAINVLK             
Sbjct: 117 ----WDGSEPELAAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFKTRRSLEVI 172

Query: 177 ----------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSV 220
                           SRLL+G E+LA+ L S  D +NISFL+AARSAGYAK+ ++LSSV
Sbjct: 173 LFTSEEPTRFGISCLGSRLLSGSEALAEALKSTFDNQNISFLEAARSAGYAKDQDELSSV 232

Query: 221 FLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRN 280
           FLKKGSY AFVELHIEQGPILE EG SIG+VTAIAAPASIK DFEG GGHAGAVLMPNRN
Sbjct: 233 FLKKGSYSAFVELHIEQGPILEAEGISIGVVTAIAAPASIKVDFEGNGGHAGAVLMPNRN 292

Query: 281 DAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIG 331
           DAGLAAAELALAVEKHVLES SIDTVGTVGILELHPGAINSIP KS LEIG
Sbjct: 293 DAGLAAAELALAVEKHVLESSSIDTVGTVGILELHPGAINSIPSKSHLEIG 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432949|ref|XP_002284376.1| PREDICTED: N-carbamoyl-L-amino acid hydrolase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224107899|ref|XP_002314646.1| predicted protein [Populus trichocarpa] gi|222863686|gb|EEF00817.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357441031|ref|XP_003590793.1| N-carbamoyl-L-amino acid hydrolase [Medicago truncatula] gi|355479841|gb|AES61044.1| N-carbamoyl-L-amino acid hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297737174|emb|CBI26375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432610|ref|XP_004134092.1| PREDICTED: uncharacterized hydrolase HI_0588-like [Cucumis sativus] gi|449531946|ref|XP_004172946.1| PREDICTED: uncharacterized hydrolase HI_0588-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356576493|ref|XP_003556365.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized hydrolase HI_0588-like [Glycine max] Back     alignment and taxonomy information
>gi|363807862|ref|NP_001242443.1| uncharacterized protein LOC100797579 precursor [Glycine max] gi|255641064|gb|ACU20811.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297795055|ref|XP_002865412.1| hypothetical protein ARALYDRAFT_494642 [Arabidopsis lyrata subsp. lyrata] gi|297311247|gb|EFH41671.1| hypothetical protein ARALYDRAFT_494642 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327548|ref|NP_199173.2| ureidoglycolate amidohydrolase [Arabidopsis thaliana] gi|18377779|gb|AAL67039.1| putative N-carbamyl-L-amino acid amidohydrolase [Arabidopsis thaliana] gi|20259221|gb|AAM14326.1| putative N-carbamyl-L-amino acid amidohydrolase [Arabidopsis thaliana] gi|110741173|dbj|BAF02137.1| N-carbamyl-L-amino acid amidohydrolase-like protein [Arabidopsis thaliana] gi|332007603|gb|AED94986.1| ureidoglycolate amidohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
UNIPROTKB|B9RTE0349 RCOM_0908830 "N-carbamoyl-L-am 0.441 0.458 0.762 1.6e-113
TAIR|locus:2158342476 UAH "ureidoglycolate amidohydr 0.439 0.334 0.726 2e-67
UNIPROTKB|Q53389409 amaB "N-carbamoyl-L-amino acid 0.508 0.449 0.338 1.3e-27
UNIPROTKB|P77425411 allC "allantoate amidohydrolas 0.720 0.635 0.293 3.3e-21
TIGR_CMR|SPO_3304394 SPO_3304 "amidase, hydantoinas 0.762 0.700 0.283 1.9e-19
TAIR|locus:2119732 525 AAH "allantoate amidohydrolase 0.290 0.2 0.355 5.3e-17
CGD|CAL0003889 434 orf19.1369 [Candida albicans ( 0.511 0.426 0.284 2.4e-16
UNIPROTKB|Q59YF7 434 PYD3 "Likely beta-alanine synt 0.511 0.426 0.284 2.4e-16
UNIPROTKB|Q4K949409 PFL_4137 "N-carbamyl-L-amino a 0.461 0.408 0.288 3.6e-15
ASPGD|ASPL0000017693 502 AN3707 [Emericella nidulans (t 0.254 0.183 0.326 2.2e-14
UNIPROTKB|B9RTE0 RCOM_0908830 "N-carbamoyl-L-amino acid hydrolase, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 595 (214.5 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
 Identities = 122/160 (76%), Positives = 132/160 (82%)

Query:   172 INVLKSRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFV 231
             I+ L SRLL+G E+LA+ L S  D +NISFL+AARSAGYAK+ ++LSSVFLKKGSY AFV
Sbjct:   184 ISCLGSRLLSGSEALAEALKSTFDNQNISFLEAARSAGYAKDQDELSSVFLKKGSYSAFV 243

Query:   232 ELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNRNDXXXXXXXXXX 291
             ELHIEQGPILE EG SIG+VTAIAAPASIK DFEG GGHAGAVLMPNRND          
Sbjct:   244 ELHIEQGPILEAEGISIGVVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDAGLAAAELAL 303

Query:   292 XVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIG 331
              VEKHVLES SIDTVGTVGILELHPGAINSIP KS LEIG
Sbjct:   304 AVEKHVLESSSIDTVGTVGILELHPGAINSIPSKSHLEIG 343
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2158342 UAH "ureidoglycolate amidohydrolase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q53389 amaB "N-carbamoyl-L-amino acid hydrolase" [Geobacillus stearothermophilus (taxid:1422)] Back     alignment and assigned GO terms
UNIPROTKB|P77425 allC "allantoate amidohydrolase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3304 SPO_3304 "amidase, hydantoinase/carbamoylase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2119732 AAH "allantoate amidohydrolase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003889 orf19.1369 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59YF7 PYD3 "Likely beta-alanine synthase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K949 PFL_4137 "N-carbamyl-L-amino acid amidohydrolase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017693 AN3707 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
cd03884399 cd03884, M20_bAS, M20 Peptidase beta-alanine synth 1e-82
PRK09290413 PRK09290, PRK09290, allantoate amidohydrolase; Rev 2e-72
PRK12893412 PRK12893, PRK12893, allantoate amidohydrolase; Rev 6e-63
PRK12890414 PRK12890, PRK12890, allantoate amidohydrolase; Rev 1e-55
TIGR01879400 TIGR01879, hydantase, amidase, hydantoinase/carbam 2e-52
PRK12892412 PRK12892, PRK12892, allantoate amidohydrolase; Rev 3e-42
PRK12891414 PRK12891, PRK12891, allantoate amidohydrolase; Rev 3e-33
TIGR03176406 TIGR03176, AllC, allantoate amidohydrolase 4e-33
PRK13590591 PRK13590, PRK13590, putative bifunctional OHCU dec 1e-29
PRK13799591 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-a 1e-26
COG0624409 COG0624, ArgE, Acetylornithine deacetylase/Succiny 2e-10
pfam01546310 pfam01546, Peptidase_M20, Peptidase family M20/M25 4e-08
cd03884399 cd03884, M20_bAS, M20 Peptidase beta-alanine synth 0.002
PRK09290413 PRK09290, PRK09290, allantoate amidohydrolase; Rev 0.002
>gnl|CDD|193505 cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase Back     alignment and domain information 
 Score =  256 bits (657), Expect = 1e-82
 Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 41/284 (14%)

Query: 69  LQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISS 128
           L  +++EL+    TP   VTR+  T  D  AR ++   M  +GL VR DA GN++G    
Sbjct: 1   LWARLEELARIGATPGGGVTRLALTPEDRAARDWLAAWMEEAGLEVRIDAAGNLFG---- 56

Query: 129 SSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------------ 176
                  G + +L +V TGSH+D +P  G++DG  GVL  LE +  LK            
Sbjct: 57  ----RLEGADPDLPAVLTGSHLDTVPNGGRFDGALGVLAGLEVLRALKEAGIRPPRPIEV 112

Query: 177 -----------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDLSS 219
                            SR LAG   L  DL ++ D   ++  +A  + GY  E   L+ 
Sbjct: 113 VAFTNEEGSRFGPSLLGSRALAGTLDLE-DLLALRDADGVTLAEALAAIGYDPE--RLAE 169

Query: 220 VFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMPNR 279
                G   A++ELHIEQGP+LE EG  IG+VT IA    ++    G  GHAG   M  R
Sbjct: 170 AARDPGDIAAYLELHIEQGPVLEAEGLPIGVVTGIAGIRRLRVTVTGEAGHAGTTPMALR 229

Query: 280 NDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIP 323
            DA LAAAEL LAVE+   E G  D V TVG LE+ P A+N IP
Sbjct: 230 RDALLAAAELILAVERIARELGD-DLVATVGRLEVEPNAVNVIP 272

Peptidase M20 family, beta-alanine synthase (bAS; N-carbamoyl-beta-alanine amidohydrolase and beta-ureidopropionase; EC 3.5.1.6) subfamily. bAS is an amidohydrolase and is the final enzyme in the pyrimidine catabolic pathway, which is involved in the regulation of the cellular pyrimidine pool. The bAS catalyzes the irreversible hydrolysis of the N-carbamylated beta-amino acids to beta-alanine or aminoisobutyrate under the release of carbon dioxide and ammonia. Also included in this subfamily is allantoate amidohydrolase (allantoate deiminase), which catalyzes the conversion of allantoate to (S)-ureidoglycolate, one of the crucial alternate steps in purine metabolism. It is possible that these two enzymes arose from the same ancestral peptidase that evolved into two structurally related enzymes with distinct catalytic properties and biochemical roles within the cell. Yeast requires beta-alanine as a precursor of pantothenate and coenzyme A biosynthesis, but generates it mostly via degradation of spermine. Disorders in pyrimidine degradation and beta-alanine metabolism caused by beta-ureidopropionase deficiency (UPB1 gene) in humans are normally associated with neurological disorders. Length = 399
>gnl|CDD|236456 PRK09290, PRK09290, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|237250 PRK12893, PRK12893, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|237248 PRK12890, PRK12890, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|200138 TIGR01879, hydantase, amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|237249 PRK12891, PRK12891, allantoate amidohydrolase; Reviewed Back     alignment and domain information
>gnl|CDD|234137 TIGR03176, AllC, allantoate amidohydrolase Back     alignment and domain information
>gnl|CDD|184168 PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|106740 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 Back     alignment and domain information
>gnl|CDD|193505 cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase Back     alignment and domain information
>gnl|CDD|236456 PRK09290, PRK09290, allantoate amidohydrolase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
TIGR03176406 AllC allantoate amidohydrolase. This enzyme cataly 100.0
PRK13799591 unknown domain/N-carbamoyl-L-amino acid hydrolase 100.0
PRK13590591 putative bifunctional OHCU decarboxylase/allantoat 100.0
PRK12891414 allantoate amidohydrolase; Reviewed 100.0
TIGR01879401 hydantase amidase, hydantoinase/carbamoylase famil 100.0
PRK12892412 allantoate amidohydrolase; Reviewed 100.0
PRK12893412 allantoate amidohydrolase; Reviewed 100.0
PRK12890414 allantoate amidohydrolase; Reviewed 100.0
PRK09290413 allantoate amidohydrolase; Reviewed 100.0
PRK07473376 carboxypeptidase; Provisional 99.97
PRK06915 422 acetylornithine deacetylase; Validated 99.97
PRK06837 427 acetylornithine deacetylase; Provisional 99.96
PRK07338402 hypothetical protein; Provisional 99.96
PRK06133 410 glutamate carboxypeptidase; Reviewed 99.96
PRK00466346 acetyl-lysine deacetylase; Validated 99.96
PRK13013 427 succinyl-diaminopimelate desuccinylase; Reviewed 99.96
PRK08588377 succinyl-diaminopimelate desuccinylase; Reviewed 99.96
TIGR01883361 PepT-like peptidase T-like protein. This model rep 99.96
TIGR03320 395 ygeY M20/DapE family protein YgeY. Members of this 99.96
PRK08737364 acetylornithine deacetylase; Provisional 99.96
PRK07522385 acetylornithine deacetylase; Provisional 99.96
TIGR01910375 DapE-ArgE acetylornithine deacetylase or succinyl- 99.96
TIGR03526 395 selenium_YgeY putative selenium metabolism hydrola 99.96
PRK13004 399 peptidase; Reviewed 99.96
PRK05111383 acetylornithine deacetylase; Provisional 99.96
PLN02693 437 IAA-amino acid hydrolase 99.96
TIGR01892364 AcOrn-deacetyl acetylornithine deacetylase (ArgE). 99.96
PRK13009375 succinyl-diaminopimelate desuccinylase; Reviewed 99.96
TIGR01893 477 aa-his-dipept aminoacyl-histidine dipeptidase. 99.96
PLN02280 478 IAA-amino acid hydrolase 99.95
PRK08652347 acetylornithine deacetylase; Provisional 99.95
PRK04443348 acetyl-lysine deacetylase; Provisional 99.95
PRK09133472 hypothetical protein; Provisional 99.95
TIGR01246370 dapE_proteo succinyl-diaminopimelate desuccinylase 99.95
PRK13007352 succinyl-diaminopimelate desuccinylase; Reviewed 99.95
TIGR01891363 amidohydrolases amidohydrolase. This model represe 99.95
PRK13381404 peptidase T; Provisional 99.95
PRK13983400 diaminopimelate aminotransferase; Provisional 99.95
TIGR01880400 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase 99.95
TIGR01900373 dapE-gram_pos succinyl-diaminopimelate desuccinyla 99.95
PRK08651394 succinyl-diaminopimelate desuccinylase; Reviewed 99.95
PRK07907 449 hypothetical protein; Provisional 99.94
PRK08596 421 acetylornithine deacetylase; Validated 99.94
COG0624409 ArgE Acetylornithine deacetylase/Succinyl-diaminop 99.94
PRK08262486 hypothetical protein; Provisional 99.94
PRK07906426 hypothetical protein; Provisional 99.94
TIGR01882410 peptidase-T peptidase T. This model represents a t 99.94
PRK08201456 hypothetical protein; Provisional 99.94
PRK06446436 hypothetical protein; Provisional 99.94
PRK05469408 peptidase T; Provisional 99.94
PRK15026 485 aminoacyl-histidine dipeptidase; Provisional 99.93
PRK09104464 hypothetical protein; Validated 99.93
TIGR01902336 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d 99.93
PRK07079 469 hypothetical protein; Provisional 99.92
PRK07205444 hypothetical protein; Provisional 99.9
COG1473 392 AbgB Metal-dependent amidase/aminoacylase/carboxyp 99.9
PRK07318466 dipeptidase PepV; Reviewed 99.9
TIGR01886466 dipeptidase dipeptidase PepV. This model represent 99.89
PRK06156520 hypothetical protein; Provisional 99.88
TIGR01887447 dipeptidaselike dipeptidase, putative. This model 99.86
KOG2275 420 consensus Aminoacylase ACY1 and related metalloexo 99.84
PRK08554438 peptidase; Reviewed 99.77
PF07687111 M20_dimer: Peptidase dimerisation domain This fami 99.59
COG2195414 PepD Di- and tripeptidases [Amino acid transport a 99.13
KOG2276 473 consensus Metalloexopeptidases [Amino acid transpo 99.0
COG1363355 FrvX Cellulase M and related proteins [Carbohydrat 98.98
COG4187 553 RocB Arginine degradation protein (predicted deacy 98.97
PRK10199346 alkaline phosphatase isozyme conversion aminopepti 98.96
TIGR03106343 trio_M42_hydro hydrolase, peptidase M42 family. Th 98.78
PRK09961344 exoaminopeptidase; Provisional 98.61
TIGR03107350 glu_aminopep glutamyl aminopeptidase. This model r 98.55
PRK09864356 putative peptidase; Provisional 98.36
PF01546189 Peptidase_M20: Peptidase family M20/M25/M40 This f 98.18
KOG2194 834 consensus Aminopeptidases of the M20 family [Postt 97.23
KOG3946338 consensus Glutaminyl cyclase [Posttranslational mo 90.71
PF04389179 Peptidase_M28: Peptidase family M28; InterPro: IPR 90.24
PF05343292 Peptidase_M42: M42 glutamyl aminopeptidase; InterP 87.22
>TIGR03176 AllC allantoate amidohydrolase Back     alignment and domain information 
Probab=100.00  E-value=2.7e-50  Score=404.03  Aligned_cols=274  Identities=34%  Similarity=0.503  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHHcCCCCCCCccccccCCHhHHHHHHHHHHHHHHCCCeEEEcccCcEEEeccCCCceeeeCCCCCCceEEE
Q 048461           67 ETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELASVAT  146 (362)
Q Consensus        67 ~~l~~~l~~Lv~i~s~~~~Gv~r~~~s~~E~~a~~~l~~~L~~~Gl~v~~d~~gNvia~~~~~~~~~~~G~~~~~p~Ill  146 (362)
                      .|+++.|++|.+|++.+.+|++|++||.+|+++++||++||+++|++|++|.+||+|+        +++|..++.|+|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~--------~~~g~~~~~~~i~~   74 (406)
T TIGR03176         3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVGNLYG--------RLVGTEFPEETILT   74 (406)
T ss_pred             HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEE--------EecCCCCCCCeEEE
Confidence            6899999999999877778999999999999999999999999999999999999999        99998766799999


Q ss_pred             EecccCCCCCCccccHHHHHHHHHHHHHhh-----------------------------hcccccccchhhhhcccccCC
Q 048461          147 GSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------------SRLLAGIESLAKDLTSIVDGK  197 (362)
Q Consensus       147 ~sHlDTVp~gG~~Dg~~Gv~aal~a~~~L~-----------------------------s~~~~g~~~~~e~l~~~~D~~  197 (362)
                      +|||||||+||+|||++||+++|++++.|+                             |+.+.|.+.. +.+....|.+
T Consensus        75 gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~-~~~~~~~d~~  153 (406)
T TIGR03176        75 GSHIDTVVNGGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKP-EDVRTIEDAK  153 (406)
T ss_pred             eccccCCCCCCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCH-HHHHhCcCCC
Confidence            999999999999999999999999999998                             2234444432 2234457888


Q ss_pred             cchHHHHHHHcCCCCccccchhhhhccCCceeEEEeecccCcccccCCceeeEEEeeecceEEEEEEEeeCCCCCcCCCC
Q 048461          198 NISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAVLMP  277 (362)
Q Consensus       198 G~~~~e~~ee~G~~~~~~~i~~~~~~~~~i~a~~elhie~g~vle~~~~~~giv~~~kG~~~~~I~v~G~~aHAg~~P~~  277 (362)
                      |+++.+++++.|+.++.  +...   ..++++|+|+|||||++||.++.++|+|++++|..||+|+|+|+++|+|++||.
T Consensus       154 g~~~~~~~~~~g~~~~~--~~~~---~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~  228 (406)
T TIGR03176       154 GIKFVDAMHACGFDLRK--APTV---RDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMS  228 (406)
T ss_pred             CCCHHHHHHHcCCCccc--cccc---ccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcc
Confidence            99999999999997542  2222   137899999999999999999999999999999999999999999999988986


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhhCCCCeEEEEEEEEecCCccceecCeEEEEEeeeCCCCCCCCHHHHHHHHHHHHHHHH
Q 048461          278 NRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVLALTLA  357 (362)
Q Consensus       278 ~g~nAi~aaa~li~~L~~l~~~~~~~~~t~tvG~I~~gg~a~NvVP~~a~l~i~~rh~p~E~~~~ed~~~gi~~l~~~l~  357 (362)
                      +|+||+.+|++++.+++++..+.. +.+++|||+|+++|+++|+||++|++++|+|+.|.|  ..+++.+.++..++.+.
T Consensus       229 ~r~dAi~aaa~~i~~l~~~~~~~~-~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~--~~e~v~~~i~~~i~~ia  305 (406)
T TIGR03176       229 YRRDTVYAFSRICTQSIERAKEIG-DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAA--VLRNFTKELENDMKAIA  305 (406)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHH--HHHHHHHHHHHHHHHHH
Confidence            679999999999999998765432 457899999997678999999999999999999998  77777777777766554

This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK12891 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family Back     alignment and domain information
>PRK12892 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12893 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK12890 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK09290 allantoate amidohydrolase; Reviewed Back     alignment and domain information
>PRK07473 carboxypeptidase; Provisional Back     alignment and domain information
>PRK06915 acetylornithine deacetylase; Validated Back     alignment and domain information
>PRK06837 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07338 hypothetical protein; Provisional Back     alignment and domain information
>PRK06133 glutamate carboxypeptidase; Reviewed Back     alignment and domain information
>PRK00466 acetyl-lysine deacetylase; Validated Back     alignment and domain information
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01883 PepT-like peptidase T-like protein Back     alignment and domain information
>TIGR03320 ygeY M20/DapE family protein YgeY Back     alignment and domain information
>PRK08737 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK07522 acetylornithine deacetylase; Provisional Back     alignment and domain information
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase Back     alignment and domain information
>PRK13004 peptidase; Reviewed Back     alignment and domain information
>PRK05111 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PLN02693 IAA-amino acid hydrolase Back     alignment and domain information
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) Back     alignment and domain information
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase Back     alignment and domain information
>PLN02280 IAA-amino acid hydrolase Back     alignment and domain information
>PRK08652 acetylornithine deacetylase; Provisional Back     alignment and domain information
>PRK04443 acetyl-lysine deacetylase; Provisional Back     alignment and domain information
>PRK09133 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade Back     alignment and domain information
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>TIGR01891 amidohydrolases amidohydrolase Back     alignment and domain information
>PRK13381 peptidase T; Provisional Back     alignment and domain information
>PRK13983 diaminopimelate aminotransferase; Provisional Back     alignment and domain information
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase Back     alignment and domain information
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase Back     alignment and domain information
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed Back     alignment and domain information
>PRK07907 hypothetical protein; Provisional Back     alignment and domain information
>PRK08596 acetylornithine deacetylase; Validated Back     alignment and domain information
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08262 hypothetical protein; Provisional Back     alignment and domain information
>PRK07906 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01882 peptidase-T peptidase T Back     alignment and domain information
>PRK08201 hypothetical protein; Provisional Back     alignment and domain information
>PRK06446 hypothetical protein; Provisional Back     alignment and domain information
>PRK05469 peptidase T; Provisional Back     alignment and domain information
>PRK15026 aminoacyl-histidine dipeptidase; Provisional Back     alignment and domain information
>PRK09104 hypothetical protein; Validated Back     alignment and domain information
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase Back     alignment and domain information
>PRK07079 hypothetical protein; Provisional Back     alignment and domain information
>PRK07205 hypothetical protein; Provisional Back     alignment and domain information
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] Back     alignment and domain information
>PRK07318 dipeptidase PepV; Reviewed Back     alignment and domain information
>TIGR01886 dipeptidase dipeptidase PepV Back     alignment and domain information
>PRK06156 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01887 dipeptidaselike dipeptidase, putative Back     alignment and domain information
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08554 peptidase; Reviewed Back     alignment and domain information
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] Back     alignment and domain information
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional Back     alignment and domain information
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family Back     alignment and domain information
>PRK09961 exoaminopeptidase; Provisional Back     alignment and domain information
>TIGR03107 glu_aminopep glutamyl aminopeptidase Back     alignment and domain information
>PRK09864 putative peptidase; Provisional Back     alignment and domain information
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3n5f_A408 Crystal Structure Of L-N-Carbamoylase From Geobacil 4e-28
1z2l_A423 Crystal Structure Of Allantoate-Amidohydrolase From 2e-26
2imo_A 423 Crystal Structure Of Allantoate Amidohydrolase From 2e-24
2v8v_A 474 Crystal Structure Of Mutant R322a Of Beta-Alanine S 2e-18
1r3n_A 462 Crystal Structure Of Beta-Alanine Synthase From Sac 3e-18
2v8d_A 474 Crystal Structure Of Mutant E159a Of Beta-Alanine S 3e-18
2v8g_A 474 Crystal Structure Of Beta-Alanine Synthase From Sac 3e-18
1r43_A 463 Crystal Structure Of Beta-Alanine Synthase From Sac 6e-18
>pdb|3N5F|A Chain A, Crystal Structure Of L-N-Carbamoylase From Geobacillus Stearothermophilus Cect43 Length = 408 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 132/294 (44%), Gaps = 43/294 (14%)
Query: 64  VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIY 123
           +  E L +++ EL      P+  VTR+  T  +  A+  + + M  +GL V EDA GN+ 
Sbjct: 2   IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLI 61
Query: 124 GEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------- 176
           G           G   +   V  GSH+D++   G +DG  GVL  +E +  +        
Sbjct: 62  GRKE--------GTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTH 113
Query: 177 ----------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEH 214
                                 SR +AG  +L  +     D + IS  +A + AG   + 
Sbjct: 114 HPIEVVAFTDEEGARFRFGMIGSRAMAG--TLPPEALECRDAEGISLAEAMKQAGL--DP 169
Query: 215 NDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAV 274
           + L     K G+  A+VELHIEQG +LE+ G  +GIVT IA    +K   EG   HAGA 
Sbjct: 170 DRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGAT 229
Query: 275 LMPNRNDXXXXXXXXXXXVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQL 328
            M  R D           +E+    +G+  TVGTVG L ++PG IN IP + + 
Sbjct: 230 PMSLRRDPMAAAAQIIIVIEEEARRTGT--TVGTVGQLHVYPGGINVIPERVEF 281
>pdb|1Z2L|A Chain A, Crystal Structure Of Allantoate-Amidohydrolase From E.Coli K12 In Complex With Substrate Allantoate Length = 423 Back     alignment and structure
>pdb|2IMO|A Chain A, Crystal Structure Of Allantoate Amidohydrolase From Escherichia Coli At Ph 4.6 Length = 423 Back     alignment and structure
>pdb|2V8V|A Chain A, Crystal Structure Of Mutant R322a Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 474 Back     alignment and structure
>pdb|1R3N|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 462 Back     alignment and structure
>pdb|2V8D|A Chain A, Crystal Structure Of Mutant E159a Of Beta-Alanine Synthase From Saccharomyces Kluyveri Length = 474 Back     alignment and structure
>pdb|2V8G|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri In Complex With The Product Beta- Alanine Length = 474 Back     alignment and structure
>pdb|1R43|A Chain A, Crystal Structure Of Beta-Alanine Synthase From Saccharomyces Kluyveri (Selenomethionine Substituted Protein) Length = 463 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 1e-87
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 4e-05
1z2l_A 423 Allantoate amidohydrolase; ALLC, purine cataboli a 1e-87
1z2l_A423 Allantoate amidohydrolase; ALLC, purine cataboli a 2e-05
2v8h_A 474 Beta-alanine synthase; amidohydrolase, alpha and b 4e-77
2v8h_A474 Beta-alanine synthase; amidohydrolase, alpha and b 7e-05
3io1_A 445 Aminobenzoyl-glutamate utilization protein; peptid 5e-04
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Length = 408 Back     alignment and structure
 Score =  269 bits (690), Expect = 1e-87
 Identities = 93/289 (32%), Positives = 133/289 (46%), Gaps = 43/289 (14%)

Query: 64  VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIY 123
           +  E L +++ EL      P+  VTR+  T  +  A+  + + M  +GL V EDA GN+ 
Sbjct: 2   IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLI 61

Query: 124 GEISSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK------- 176
           G           G   +   V  GSH+D++   G +DG  GVL  +E +  +        
Sbjct: 62  G--------RKEGTNPDATVVLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTH 113

Query: 177 ----------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEH 214
                                 SR +AG   L  +     D + IS  +A + AG   + 
Sbjct: 114 HPIEVVAFTDEEGARFRFGMIGSRAMAGT--LPPEALECRDAEGISLAEAMKQAGLDPD- 170

Query: 215 NDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAGAV 274
             L     K G+  A+VELHIEQG +LE+ G  +GIVT IA    +K   EG   HAGA 
Sbjct: 171 -RLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAGAT 229

Query: 275 LMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIP 323
            M  R D   AAA++ + +E+    +G   TVGTVG L ++PG IN IP
Sbjct: 230 PMSLRRDPMAAAAQIIIVIEEEARRTG--TTVGTVGQLHVYPGGINVIP 276
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Length = 408 Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Length = 423 Back     alignment and structure
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Length = 423 Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Length = 474 Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Length = 474 Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Length = 445 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3n5f_A408 L-carbamoylase, N-carbamoyl-L-amino acid hydrolase 100.0
1z2l_A 423 Allantoate amidohydrolase; ALLC, purine cataboli a 100.0
2v8h_A 474 Beta-alanine synthase; amidohydrolase, alpha and b 100.0
3gb0_A373 Peptidase T; NP_980509.1, aminopeptidase PEPT, pep 99.97
3rza_A396 Tripeptidase; phosphorylase/hydrolase-like, struct 99.97
3pfo_A 433 Putative acetylornithine deacetylase; metal bindin 99.97
3ife_A434 Peptidase T; metallopeptidase, aminopeptidase, hyd 99.97
1xmb_A 418 IAA-amino acid hydrolase homolog 2; structural gen 99.97
3ct9_A356 Acetylornithine deacetylase; NP_812461.1, A putati 99.97
1ysj_A404 Protein YXEP; M20 family peptidase, dinuclear meta 99.97
3ram_A 394 HMRA protein; two-domain, catalytic (alpha-beta-al 99.97
1cg2_A393 Carboxypeptidase G2; metallocarboxypeptidase, hydr 99.97
3io1_A 445 Aminobenzoyl-glutamate utilization protein; peptid 99.96
2rb7_A364 Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat 99.96
1vgy_A 393 Succinyl-diaminopimelate desuccinylase; structural 99.96
3tx8_A369 Succinyl-diaminopimelate desuccinylase; peptidase, 99.96
3isz_A377 Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b 99.96
1fno_A 417 Peptidase T; metallo peptidase, protease, hydrolas 99.95
2f7v_A369 Aectylcitrulline deacetylase; alpha/beta, hydrolas 99.95
2pok_A481 Peptidase, M20/M25/M40 family; M20 family peptidas 99.94
2zog_A 479 Cytosolic non-specific dipeptidase; metallopeptida 99.94
2qyv_A 487 XAA-His dipeptidase; YP_718209.1, structural genom 99.93
3dlj_A 485 Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti 99.93
3mru_A 490 Aminoacyl-histidine dipeptidase; metalloprotease, 99.93
3pfe_A 472 Succinyl-diaminopimelate desuccinylase; metal bind 99.93
1lfw_A470 PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac 99.89
3khx_A492 Putative dipeptidase sacol1801; DAPE, metallopepti 99.89
4h2k_A269 Succinyl-diaminopimelate desuccinylase; DAPE, MCSG 99.69
3t68_A268 Succinyl-diaminopimelate desuccinylase; DAPE, csgi 99.64
1q7l_A198 Aminoacylase-1; catalysis, enzyme dimerization, si 99.63
2wzn_A354 TET3, 354AA long hypothetical operon protein FRV; 99.61
2fvg_A340 Endoglucanase; TM1049, structural genomics, joint 99.5
1tkj_A284 Aminopeptidase, SGAP; double-zinc metalloproteinas 99.47
3gux_A314 Putative Zn-dependent exopeptidase; aminopeptidase 99.4
1vhe_A373 Aminopeptidase/glucanase homolog; structural genom 99.37
1rtq_A299 Bacterial leucyl aminopeptidase; bimetallic, zinc, 99.37
3tc8_A309 Leucine aminopeptidase; phosphorylase/hydrolase-li 99.37
2wyr_A332 Cobalt-activated peptidase TET1; hydrolase, large 99.36
1y0y_A353 FRV operon protein FRVX; aminopeptidase, PDZ, hydr 99.34
2gre_A349 Deblocking aminopeptidase; structural genomi prote 99.26
2afw_A329 Glutaminyl-peptide cyclotransferase; alpha-beta pr 99.14
1vho_A346 Endoglucanase; structural genomics, unknown functi 99.07
1ylo_A348 Hypothetical protein SF2450; structural genomics, 99.03
4fuu_A309 Leucine aminopeptidase; phosphorylase/hydrolase li 98.99
3pb6_X330 Glutaminyl-peptide cyclotransferase-like protein; 98.95
3kl9_A355 PEPA, glutamyl aminopeptidase; tetrahedral aminope 98.91
3cpx_A321 Aminopeptidase, M42 family; YP_676701.1, putative 98.87
2vpu_A354 TET3, 354AA long hypothetical operon protein FRV; 98.7
4f9u_A312 CG32412; alpha/beta hydrolase, PGlu formation, PE, 98.64
3isx_A343 Endoglucanase; TM1050, structural genomics, joint 98.58
4fai_A330 CG5976, isoform B; alpha/beta hydrolase, PGlu form 98.54
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.28
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 97.65
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 96.83
3kas_A 640 Transferrin receptor protein 1; transferrin recept 95.98
1y7e_A 458 Probable M18-family aminopeptidase 1; aminopeptida 92.36
2ijz_A 428 Probable M18-family aminopeptidase 2; putative ami 91.61
2glf_A 450 Probable M18-family aminopeptidase 1; putative, NY 90.31
2ek8_A 421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 82.89
2glj_A461 Probable M18-family aminopeptidase 1; aminopeptida 81.43
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} Back     alignment and structure
Probab=100.00  E-value=5.1e-42  Score=341.27  Aligned_cols=276  Identities=34%  Similarity=0.494  Sum_probs=231.7

Q ss_pred             cCHHHHHHHHHHHHcCCCCCCCccccccCCHhHHHHHHHHHHHHHHCCCeEEEcccCcEEEeccCCCceeeeCCCCCCce
Q 048461           64 VDTETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSSRGVWIGNEAELAS  143 (362)
Q Consensus        64 ~~~~~l~~~l~~Lv~i~s~~~~Gv~r~~~s~~E~~a~~~l~~~L~~~Gl~v~~d~~gNvia~~~~~~~~~~~G~~~~~p~  143 (362)
                      ++.++++++|++|++|++++++|++|+++|++|.++++||+++|+++|+++++|..+|+++        +++|+++++|+
T Consensus         2 ~~~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~d~~gnv~a--------~~~g~~~~~~~   73 (408)
T 3n5f_A            2 IQGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYEDAAGNLIG--------RKEGTNPDATV   73 (408)
T ss_dssp             -CHHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEECTTCCEEE--------EECCSSTTSCE
T ss_pred             CCHHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEcCCCCEEE--------EecCCCCCCCE
Confidence            5789999999999999998889999999999999999999999999999999999999999        99886544689


Q ss_pred             EEEEecccCCCCCCccccHHHHHHHHHHHHHhhhcc--cccccchhhhhcccccCC------------------------
Q 048461          144 VATGSHIDAIPYSGKYDGVTGVLGALEAINVLKSRL--LAGIESLAKDLTSIVDGK------------------------  197 (362)
Q Consensus       144 Ill~sHlDTVp~gG~~Dg~~Gv~aal~a~~~L~s~~--~~g~~~~~e~l~~~~D~~------------------------  197 (362)
                      |+|++||||||.+|.||++.|+++++++++.|+...  +.+++.    +..+.|||                        
T Consensus        74 i~l~aH~D~v~~~g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~----~~~~~~EE~~~~~~g~~Gs~~~~~~~~~~~~~  149 (408)
T 3n5f_A           74 VLVGSHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTHHPIE----VVAFTDEEGARFRFGMIGSRAMAGTLPPEALE  149 (408)
T ss_dssp             EEEEEESCCCTTBCSSTTHHHHHHHHHHHHHHHHTTCCCSSCEE----EEEESCSSCTTTTCCCHHHHHHHTCCCGGGGS
T ss_pred             EEEEecCCCCCCCCccCCHHHHHHHHHHHHHHHHcCCCCCCCEE----EEEEcCccccccCCCCcCHHHHHcCCCHHHhh
Confidence            999999999999999999999999999999997432  455554    22345554                        


Q ss_pred             -----cchHHHHHHHcCCCCccccchhhhhccCCceeEEEeecccCcccccCCceeeEEEeeecceEEEEEEEeeCCCCC
Q 048461          198 -----NISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHAG  272 (362)
Q Consensus       198 -----G~~~~e~~ee~G~~~~~~~i~~~~~~~~~i~a~~elhie~g~vle~~~~~~giv~~~kG~~~~~I~v~G~~aHAg  272 (362)
                           |.++.+++.+.|+.++.  +.....++.++++++++|++||+++|+++.+.+++.+++|..+++|+++|+++|+|
T Consensus       150 ~~~~~G~~~~~~l~~~G~~~~~--~~~~~~~~~~~~~~~~lhi~~g~~le~~~~~~gi~~~~~g~~~~~i~v~G~~~Hag  227 (408)
T 3n5f_A          150 CRDAEGISLAEAMKQAGLDPDR--LPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVKFTIEGKAEHAG  227 (408)
T ss_dssp             CBCTTCCBHHHHHHHTTCCGGG--GGGGCCCTTTEEEEEEEEECSSSHHHHHTCSEEEEEEECEEEEEEEEEECCCEETT
T ss_pred             ccCCCCCCHHHHHHHhCCChhh--hhhcccCccCccEEEEEeeccchhHHHcCCCeEEEEEeccceEEEEEEEEEcCcCC
Confidence                 33344556667765431  22221233468899999999999999888899999999999999999999999997


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHhhhhhCCCCeEEEEEEEEecCCccceecCeEEEEEeeeCCCCCCCCHHHHHHHHHHH
Q 048461          273 AVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKPEEYASCEDMENGVKVL  352 (362)
Q Consensus       273 ~~P~~~g~nAi~aaa~li~~L~~l~~~~~~~~~t~tvG~I~~gg~a~NvVP~~a~l~i~~rh~p~E~~~~ed~~~gi~~l  352 (362)
                      +.||..++||+.++++++.+|+++..+..  .+++|||.|++||++.|+||++|++++++|..|.|  +.+++.+.++.+
T Consensus       228 s~P~~~g~nAi~~aa~~i~~l~~~~~~~~--~~~~~vg~i~gG~~~~NvIP~~a~~~~diR~~~~~--~~~~i~~~i~~~  303 (408)
T 3n5f_A          228 ATPMSLRRDPMAAAAQIIIVIEEEARRTG--TTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAE--VRDQVWKAIAVR  303 (408)
T ss_dssp             TSCTTTCCCHHHHHHHHHHHHHHHHHHHS--SCEEEEEEEEEESCCTTEECSEEEEEEEEEESSHH--HHHHHHHHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEEEecCCCCcCcCCeEEEEEEEeCCCHH--HHHHHHHHHHHH
Confidence            78964579999999999999999875443  68999999998668999999999999999999998  788888888887


Q ss_pred             HHHHH
Q 048461          353 ALTLA  357 (362)
Q Consensus       353 ~~~l~  357 (362)
                      ++.+.
T Consensus       304 ~~~~a  308 (408)
T 3n5f_A          304 AETIA  308 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A Back     alignment and structure
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A Back     alignment and structure
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Back     alignment and structure
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Back     alignment and structure
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Back     alignment and structure
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Back     alignment and structure
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Back     alignment and structure
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Back     alignment and structure
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Back     alignment and structure
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Back     alignment and structure
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Back     alignment and structure
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Back     alignment and structure
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Back     alignment and structure
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} Back     alignment and structure
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Back     alignment and structure
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} Back     alignment and structure
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Back     alignment and structure
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Back     alignment and structure
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Back     alignment and structure
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} Back     alignment and structure
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Back     alignment and structure
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Back     alignment and structure
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A Back     alignment and structure
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Back     alignment and structure
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Back     alignment and structure
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} Back     alignment and structure
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A Back     alignment and structure
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A Back     alignment and structure
>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... Back     alignment and structure
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* Back     alignment and structure
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* Back     alignment and structure
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} Back     alignment and structure
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 Back     alignment and structure
>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} Back     alignment and structure
>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1z2la1293 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro 2e-42
d1r3na1322 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta- 2e-40
d1r3na2116 d.58.19.1 (A:248-363) Peptidase-like beta-alanine 2e-06
d1z2la2117 d.58.19.1 (A:213-329) Allantoate amidohydrolase Al 8e-06
d1tkja1277 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces gr 8e-05
d1rtqa_291 c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti 9e-05
d1vhea2275 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein Y 2e-04
d2fvga2255 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 { 0.002
d1yloa2264 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {S 0.002
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Allantoate amidohydrolase AllC catalytic domain
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (372), Expect = 2e-42
 Identities = 90/326 (27%), Positives = 128/326 (39%), Gaps = 69/326 (21%)

Query: 67  ETLQKQIDELSTFSDTPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEI 126
           + +++ +  LS+F   PA  +TR+L++   +  +   K  M  SGL  R D VGN+YG  
Sbjct: 6   QAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGR- 64

Query: 127 SSSSRGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK---------- 176
                    G E     V +GSHID +   G  DG  G L A  AI+ LK          
Sbjct: 65  -------LNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTV 117

Query: 177 -------------------SRLLAGIESLAKDLTSIVDGKNISFLDAARSAGYAKEHNDL 217
                              S+ + G+ +   D+ +I D K  SF+DA ++ G+   +   
Sbjct: 118 EVVAMAEEEGSRFPYVFWGSKNIFGLAN-PDDVRNICDAKGNSFVDAMKACGFTLPN--- 173

Query: 218 SSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPASIKADFEGTGGHA-GAVLM 276
            +    +    AFVELHIEQG +LE  G SIG+V AI                       
Sbjct: 174 -APLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVPMNKELVATLTELCEREKLNYR 232

Query: 277 PNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPIKSQLEIGYSHKP 336
              + AG  A   A                         P  +  IP  +    G SH P
Sbjct: 233 VMHSGAGHDAQIFA----------------------PRVPTCMIFIPSIN----GISHNP 266

Query: 337 EEYASCEDMENGVKVLALTLAKLSLQ 362
            E  +  D+  GVK LAL L +L+ Q
Sbjct: 267 AERTNITDLAEGVKTLALMLYQLAWQ 292
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 322 Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 116 Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Length = 277 Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Length = 275 Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Length = 255 Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Length = 264 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1r3na1322 Peptidase-like beta-alanine synthase, catalytic do 100.0
d1z2la1293 Allantoate amidohydrolase AllC catalytic domain {E 100.0
d1vgya1262 Succinyl-diaminopimelate desuccinylase, catalytic 99.78
d1r3na2116 Peptidase-like beta-alanine synthase {Yeast (Sacch 99.72
d1z2la2117 Allantoate amidohydrolase AllC {Escherichia coli [ 99.71
d1cg2a2113 Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 99.69
d1vhea2275 Hypothetical protein YsdC, catalytic domain {Bacil 99.69
d1vgya2113 Succinyl-diaminopimelate desuccinylase {Neisseria 99.64
d1ysja2115 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.64
d1xmba2119 IAA-amino acid hydrolase {Mouse-ear cress (Arabido 99.61
d2fvga2255 Endoglucanase TM1049 {Thermotoga maritima [TaxId: 99.57
g1q7l.1280 Aminoacylase-1, catalytic domain {Human (Homo sapi 99.56
d1vhoa2248 Putative endoglucanase TM1048, catalytic domain {T 99.5
d1fnoa4295 Peptidase T (tripeptidase), catalytic domain {Salm 99.47
d2grea2233 Deblocking aminopeptidase YhfE {Bacillus cereus [T 99.46
d1cg2a1276 Carboxypeptidase G2, catalytic domain {Pseudomonas 99.41
d1yloa2264 Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 99.34
d1tkja1277 Aminopeptidase {Streptomyces griseus [TaxId: 1911] 99.24
d1rtqa_291 Aminopeptidase {Aeromonas proteolytica [TaxId: 671 99.16
d1lfwa1272 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 99.1
d1ysja1261 Protein YxeP {Bacillus subtilis [TaxId: 1423]} 99.05
d1xmba1273 IAA-amino acid hydrolase, catalytic domain {Mouse- 98.93
d1lfwa2196 Aminopeptidase PepV {Lactobacillus delbrueckii [Ta 98.91
d3bi1a3304 Glutamate carboxypeptidase II FOLH1 {Human (Homo s 98.57
d2afwa1329 Glutaminyl-peptide cyclotransferase, QPCT {Human ( 98.45
d1de4c3294 Transferrin receptor ectodomain, protease-like dom 98.39
d1y0ya2255 Frv operon protein FrvX, catalytic domain {Pyrococ 98.12
d1fnoa3113 Peptidase T (tripeptidase) {Salmonella typhimurium 92.64
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Peptidase-like beta-alanine synthase, catalytic domain
species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]

Probab=100.00  E-value=1.8e-42  Score=329.91  Aligned_cols=260  Identities=34%  Similarity=0.448  Sum_probs=209.1

Q ss_pred             ccccccCHHHHHHHHHHH-HcCCC-------CCCCccccccCCHhHHHHHHHHHHHHHHCCCeEEEcccCcEEEeccCCC
Q 048461           59 VSSLSVDTETLQKQIDEL-STFSD-------TPAPSVTRVLHTENDVLARSYIKNLMGISGLSVREDAVGNIYGEISSSS  130 (362)
Q Consensus        59 ~~~~~~~~~~l~~~l~~L-v~i~s-------~~~~Gv~r~~~s~~E~~a~~~l~~~L~~~Gl~v~~d~~gNvia~~~~~~  130 (362)
                      .+.|++|.+|+++.|.++ ..++.       ++..|++|++||++|.++++||++||+++|+++++|.+||+|+      
T Consensus         8 ~~~l~in~~RL~~~l~e~~~~~g~~~~~g~~~~~~G~tRla~S~~d~~ar~~l~~~~~~~Gl~v~~D~~GNv~g------   81 (322)
T d1r3na1           8 AAPLSIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKVDKIGNMFA------   81 (322)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHHTCEEEEBTTSCEEE------
T ss_pred             cCCCCcCHHHHHHHHHHHHHhhccccccCCCCCCCCeecccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCcEEE------
Confidence            566899999999887655 55653       2457999999999999999999999999999999999999999      


Q ss_pred             ceeeeCCCCCCceEEEEecccCCCCCCccccHHHHHHHHHHHHHhh-----------------------------hcccc
Q 048461          131 RGVWIGNEAELASVATGSHIDAIPYSGKYDGVTGVLGALEAINVLK-----------------------------SRLLA  181 (362)
Q Consensus       131 ~~~~~G~~~~~p~Ill~sHlDTVp~gG~~Dg~~Gv~aal~a~~~L~-----------------------------s~~~~  181 (362)
                        +++|+++ .++|+++||+||||.||+|||..||+++|++++.|+                             |+.+.
T Consensus        82 --~~~G~~~-~~~v~~GSHlDTVp~GG~~DG~lGV~a~Levl~~l~e~~~~~~~~i~vv~f~~EEg~rFg~~~lGS~~~~  158 (322)
T d1r3na1          82 --VYPGKNG-GKPTATGSHLDTQPEAGKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNEEGARFARSCTGSSVWS  158 (322)
T ss_dssp             --EECCSSC-SSCEEEEECCCCCSSBCSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSCSSCSSBSSTTHHHHHHT
T ss_pred             --EecCCCC-CCceEecCccccCCcCCCcCCccchHHHHHHHHHHhhhccCCCCCcEEEEeecccccccccccccccccc
Confidence              9999765 477999999999999999999999999999999998                             34456


Q ss_pred             cccchhhh--hcccccCCcchHHHHHHHcCCCCccccchhhhhccCCceeEEEeecccCcccccCCceeeEEEeeecceE
Q 048461          182 GIESLAKD--LTSIVDGKNISFLDAARSAGYAKEHNDLSSVFLKKGSYFAFVELHIEQGPILEKEGTSIGIVTAIAAPAS  259 (362)
Q Consensus       182 g~~~~~e~--l~~~~D~~G~~~~e~~ee~G~~~~~~~i~~~~~~~~~i~a~~elhie~g~vle~~~~~~giv~~~kG~~~  259 (362)
                      |.+..++.  +....|.+|.++.+++++.|+.++..    ...++.++.+|+|+||||||+||..+.++|||+++.|..|
T Consensus       159 G~l~~~~~~~l~~~~d~~G~~l~~al~~~G~~~~~~----~~~~~~~i~a~lElHIEQGpvLe~~~~~IGVVtgI~G~~~  234 (322)
T d1r3na1         159 HDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTP----ASYKENEIDAHFELHIEQGPILEDENKAIGIVTGVQAVNF  234 (322)
T ss_dssp             TSSCHHHHHTCBBSSCSSCCBHHHHHHHTTCCCSBC----CSTTTSCCSEEEEEEECSSSHHHHTTCSEEEEEEECCEEC
T ss_pred             CCCCHHHHhhhhccccchhhhHHHHHHhcCcccccc----ccccccceeEEEEEEEcCChhHHHCCCCeeccccccceeE
Confidence            66664322  23345888999999999999986531    2234467999999999999999999999999999999999


Q ss_pred             EEEEEEeeCCCCCcCCCCCCCcHHHHHHHHHHHHHHhhhhhCCCCeEEEEEEEEecCC--cc---ceecCeEEEEE----
Q 048461          260 IKADFEGTGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPG--AI---NSIPIKSQLEI----  330 (362)
Q Consensus       260 ~~I~v~G~~aHAg~~P~~~g~nAi~aaa~li~~L~~l~~~~~~~~~t~tvG~I~~gg~--a~---NvVP~~a~l~i----  330 (362)
                      |+|+++|.+.|+..   ..+.|++.                          .+..|.+  +.   .++| .+-+-+    
T Consensus       235 ~~v~~~g~a~~~~~---~~~~d~vr--------------------------~m~SGAGHDA~~~a~~~P-t~MIFVps~~  284 (322)
T d1r3na1         235 HEVCIECVSRSAFA---QFKKDQVR--------------------------QIWSGAGHDSCQTAPHVP-TSMIFIPSKD  284 (322)
T ss_dssp             CHHHHHHHHHHHHT---TSCGGGEE--------------------------EEEESSCCTHHHHTTTSC-EEEEEECCGG
T ss_pred             EEeeccccccchhh---hhchhhhh--------------------------hcccchHHHHHHHHhhCC-eEEEEecCCC
Confidence            99999999999752   22344321                          1111121  11   2333 222323    


Q ss_pred             eeeCCCCCCCCHHHHHHHHHHHHHHHHHhhc
Q 048461          331 GYSHKPEEYASCEDMENGVKVLALTLAKLSL  361 (362)
Q Consensus       331 ~~rh~p~E~~~~ed~~~gi~~l~~~l~~l~~  361 (362)
                      ++||+|+||+++||+.+|+++|+++|.+|+.
T Consensus       285 GiSH~p~E~t~~ed~~~g~~vL~~~i~~ld~  315 (322)
T d1r3na1         285 GLSHNYYEYSSPEEIENGFKVLLQAIINYDN  315 (322)
T ss_dssp             GCCSSTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCChhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Back     information, alignment and structure
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Back     information, alignment and structure
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Back     information, alignment and structure
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Back     information, alignment and structure
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure