Citrus Sinensis ID: 048483

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MEESKIWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFCF
Secondary Structure (PSIPRED)
cccccccEEcccccccccccccccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccccccccEEEEEEcccccEEEEEEEHcccHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
meeskiwccfkgtdeeysipkdvpkghVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAtgsklripcnesIFRSILyfaspqrdrswfpfcf
Flexible Loop (DISEMBL)
meeskiwccfkgtdeeysipkdvpKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFatgsklripcNESIFRSILyfaspqrdRSWFPFCF
Low Complexity Region (SEG)
MEESKIWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFCF
Disordered region (IsUnstruct)
*****IWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFC*
Disordered Region (DISOPRED)
*************************GHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFAS*QRD****PFCF
Disordered Region (DISEMBL)
MEESKIWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFCF
Disordered Region (DISPRO)
****KIWCCFKG**EEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEESKIWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQRDRSWFPFCF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.848	0.913	0.447	1e-10
P33081	82	Auxin-induced protein 15A	no	no	0.616	0.743	0.516	7e-10
P33083	90	Auxin-induced protein 6B	no	no	0.646	0.711	0.492	1e-09
P33082	82	Auxin-induced protein X15	no	no	0.616	0.743	0.5	1e-09
P33080	92	Auxin-induced protein X10	no	no	0.616	0.663	0.467	2e-08
P33079	93	Auxin-induced protein 10A	no	no	0.616	0.655	0.467	6e-08

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 6  IWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEF- 64
          I       +E  S   D PKG++ VYVGE  KRFVI VS L  PLF+ LL +AEE F + 
Sbjct: 8  IRKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYD 67

Query: 65 ATGSKLRIPCNESIFRSILYFASPQ 89
               L IPC+E +F+ I    S Q
Sbjct: 68 HPMGGLTIPCSEDLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 22 DVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFR 80
          D PKG++ VYVGE+ KRFVI VS L  P F+ LL +AEE F +      L IPC+E +F+
Sbjct: 16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 81 SI 82
           I
Sbjct: 76 CI 77

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 22 DVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT-GSKLRIPCNESIFR 80
          DV KG++ VYVGE+ +RFVI VS L  P F+ LL +AEE F +      L IPC+E +F+
Sbjct: 24 DVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQ 83

Query: 81 SILYF 85
           I  F
Sbjct: 84 HITSF 88

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 22 DVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFR 80
          D PKG++ VYVGE+ KRFVI VS +  P F+ LL +AEE F +      L IPC+E +F+
Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75

Query: 81 SI 82
           I
Sbjct: 76 RI 77

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 22 DVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFR 80
          +VPKG++VVYVG++ +RF+I VS L  P F+ LL++AEE F +      L IPC E  F 
Sbjct: 24 EVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFL 83

Query: 81 SI 82
          ++
Sbjct: 84 TV 85

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 22 DVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEF-ATGSKLRIPCNESIFR 80
          DVPKG+  VYVG++ +RF I VS L  P F+ LL +AEE F +      L IPC E  F 
Sbjct: 25 DVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFL 84

Query: 81 SI 82
          ++
Sbjct: 85 NV 86

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
224113065	131	SAUR family protein [Populus trichocarpa	0.848	0.641	0.670	2e-25
224097848	132	SAUR family protein [Populus trichocarpa	0.858	0.643	0.674	2e-25
224140197	123	SAUR family protein [Populus trichocarpa	0.909	0.731	0.577	3e-22
357443193	116	Auxin-induced protein 6B [Medicago trunc	0.818	0.698	0.629	9e-22
359481384	127	PREDICTED: indole-3-acetic acid-induced	0.939	0.732	0.548	1e-21
297741620	124	unnamed protein product [Vitis vinifera]	0.939	0.75	0.548	2e-21
255556968	126	Indole-3-acetic acid-induced protein ARG	0.878	0.690	0.568	1e-20
357440367	123	Auxin-induced protein 6B [Medicago trunc	0.858	0.691	0.588	2e-20
357510753	115	Auxin-induced protein 6B [Medicago trunc	0.818	0.704	0.617	4e-20
356546012	123	PREDICTED: indole-3-acetic acid-induced	0.757	0.609	0.644	2e-19

>gi|224113065|ref|XP_002316379.1| SAUR family protein [Populus trichocarpa] gi|222865419|gb|EEF02550.1| SAUR family protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 15  EEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPC 74
           +EY IPKDVPKGH+ VYVGE+CKR+VIKV+LL+HPLFKALLDR EE F F TG KL IPC
Sbjct: 48  DEYFIPKDVPKGHLAVYVGEDCKRYVIKVTLLQHPLFKALLDRTEEVFGFTTGPKLCIPC 107

Query: 75  NESIFRSILYFASPQRDRSWFPFCF 99
           NE++F SIL+  + Q+D   F  CF
Sbjct: 108 NENMFNSILHCVNSQQDHK-FLLCF 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097848|ref|XP_002311083.1| SAUR family protein [Populus trichocarpa] gi|222850903|gb|EEE88450.1| SAUR family protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 14  DEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIP 73
           D+   IPKDVPKGH+ VYVGE+CKR+VIKV+LL+HPLFKALLDR EE F F TGSKL IP
Sbjct: 48  DDYCIIPKDVPKGHLAVYVGEDCKRYVIKVTLLKHPLFKALLDRTEEVFGFTTGSKLCIP 107

Query: 74  CNESIFRSILYFASPQRDRSWFPFCF 99
           CNES+F+SIL+     +DR  F  CF
Sbjct: 108 CNESMFKSILHCVDSHQDRG-FWLCF 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140197|ref|XP_002323471.1| SAUR family protein [Populus trichocarpa] gi|222868101|gb|EEF05232.1| SAUR family protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query: 3   ESKIWCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAF 62
           E + W  +  T E  SIP+DVPKGH+VVYVGE  KRFVIK++LL+HPLFKALLD+A++ +
Sbjct: 28  EYQYWGLWPSTYEGKSIPRDVPKGHLVVYVGENNKRFVIKITLLKHPLFKALLDQAQDEY 87

Query: 63  EFATGSKLRIPCNESIFRSILYFASPQRDR 92
           +F  GSKL IPC+E+IF  ++  A   RDR
Sbjct: 88  DFTAGSKLCIPCDENIFLDVVRCAGSPRDR 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443193|ref|XP_003591874.1| Auxin-induced protein 6B [Medicago truncatula] gi|355480922|gb|AES62125.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 59/81 (72%)

Query: 7   WCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT 66
           +C          IPKDVPKGH+VVYVGE+CKRFVIKV  L HP FKALLD AE+AF F  
Sbjct: 34  FCSSSQQKSNLHIPKDVPKGHLVVYVGEDCKRFVIKVGTLNHPPFKALLDHAEDAFGFTN 93

Query: 67  GSKLRIPCNESIFRSILYFAS 87
           GSKL IPCNE++F +IL+ A 
Sbjct: 94  GSKLLIPCNENVFLNILHNAG 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481384|ref|XP_002281876.2| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%)

Query: 7   WCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT 66
           W  +    E  SIP+DVPKGH+VVYVGE   RFVIK++LL+HPLFKALLD+A + ++F  
Sbjct: 35  WALWPSMHEGDSIPRDVPKGHLVVYVGENYTRFVIKITLLKHPLFKALLDQARDEYDFTA 94

Query: 67  GSKLRIPCNESIFRSILYFASPQRDRSWFPFCF 99
            SKL IPC+E+IF S++  AS  +DR  F  C 
Sbjct: 95  ASKLCIPCDENIFLSVVRCASSPQDRRSFSLCL 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741620|emb|CBI32752.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%)

Query: 7   WCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT 66
           W  +    E  SIP+DVPKGH+VVYVGE   RFVIK++LL+HPLFKALLD+A + ++F  
Sbjct: 32  WALWPSMHEGDSIPRDVPKGHLVVYVGENYTRFVIKITLLKHPLFKALLDQARDEYDFTA 91

Query: 67  GSKLRIPCNESIFRSILYFASPQRDRSWFPFCF 99
            SKL IPC+E+IF S++  AS  +DR  F  C 
Sbjct: 92  ASKLCIPCDENIFLSVVRCASSPQDRRSFSLCL 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556968|ref|XP_002519517.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis] gi|223541380|gb|EEF42931.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 66/88 (75%), Gaps = 1/88 (1%)

Query: 7   WCCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT 66
           W  +    E  SIP+DVPKGH+VVYVGE CKRFVIK+SLL HPLF+ALLD+A++ +++  
Sbjct: 35  WGLWTSLQEGKSIPRDVPKGHLVVYVGENCKRFVIKISLLGHPLFRALLDQAKDEYDYTA 94

Query: 67  GSKLRIPCNESIFRSILYFA-SPQRDRS 93
            SKL IPC+ESIF  ++  A SPQ  ++
Sbjct: 95  DSKLCIPCDESIFLDVVRCASSPQSGKT 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440367|ref|XP_003590461.1| Auxin-induced protein 6B [Medicago truncatula] gi|355479509|gb|AES60712.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 5/90 (5%)

Query: 8   CCFKGT----DEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFE 63
           CC +G      E  SIP DVPKGH+VVYVGE  KR+VIK++LL HPLFKALLD+A+E ++
Sbjct: 29  CCERGLWSSLHESCSIPSDVPKGHMVVYVGENHKRYVIKIALLHHPLFKALLDQAQEEYD 88

Query: 64  FATGSKLRIPCNESIFRSILYFA-SPQRDR 92
           F   SKL IPC+E +F S+L  A SPQ  R
Sbjct: 89  FMADSKLCIPCHEHLFLSVLRCASSPQNQR 118

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510753|ref|XP_003625665.1| Auxin-induced protein 6B [Medicago truncatula] gi|355500680|gb|AES81883.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 59/81 (72%)

Query: 15  EEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPC 74
           E  SIP DVPKGH+VVYVGE  KRFVIK+ LL HPLFKALL++A E ++F   SKL IPC
Sbjct: 32  EMDSIPNDVPKGHLVVYVGENYKRFVIKIGLLHHPLFKALLEQAREEYDFIADSKLCIPC 91

Query: 75  NESIFRSILYFASPQRDRSWF 95
           NE +F S+L FAS   +   F
Sbjct: 92  NEHLFLSVLSFASSTHNEKVF 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546012|ref|XP_003541426.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Glycine max]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 60/76 (78%), Gaps = 1/76 (1%)

Query: 18  SIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNES 77
           +IP DVPKGH+VVYVGE  KR+VIKVSLL HPLF+ALLD+A+E ++F   SKL IPC+E 
Sbjct: 43  NIPSDVPKGHLVVYVGENHKRYVIKVSLLHHPLFRALLDQAQEEYDFIADSKLCIPCDEH 102

Query: 78  IFRSILYFA-SPQRDR 92
           +F S+L  A SPQ  R
Sbjct: 103 LFLSVLRCASSPQNQR 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2057971	124	AT2G37030 "AT2G37030" [Arabido	0.858	0.685	0.546	1.7e-20
TAIR|locus:2101953	109	AT3G53250 "AT3G53250" [Arabido	0.838	0.761	0.505	2.8e-18
TAIR|locus:2142624	114	AT5G03310 "AT5G03310" [Arabido	0.757	0.657	0.543	1.8e-16
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.696	0.448	0.492	6.9e-15
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.686	0.459	0.514	6.9e-15
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.686	0.653	0.514	1.4e-14
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.696	0.450	0.507	1.8e-14
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.707	0.654	0.492	4.9e-14
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.707	0.648	0.521	4.4e-13
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.646	0.336	0.515	5.6e-13

TAIR|locus:2057971 AT2G37030 "AT2G37030" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query:     9 CFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGS 68
             C+    E   IP+DVPKGH+VVYVGEE KRFVI ++LL+HPLF+ALLD+A++A+ F+  S
Sbjct:    35 CWAFKKEAEVIPRDVPKGHLVVYVGEEYKRFVININLLKHPLFQALLDQAQDAYGFSADS 94

Query:    69 KLRIPCNESIFRSILYFA-SPQRDRS 93
             +L IPCNES F  ++  A +PQ   +
Sbjct:    95 RLWIPCNESTFLDVVRCAGAPQHQNN 120

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2101953 AT3G53250 "AT3G53250" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query:     8 CCFKGT----DEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFE 63
             CC K +     E  +IPKDVP+GH+VVYVG++ KRFVIK+SLL HP+FKALLD+A++A+ 
Sbjct:    18 CCDKVSWGFKKENEAIPKDVPRGHLVVYVGDDYKRFVIKMSLLTHPIFKALLDQAQDAYN 77

Query:    64 FATGSKLRIPCNESIFRSILYFA-SPQRDRS 93
                 S+L IPC+E+ F  ++  + +PQ  R+
Sbjct:    78 ---SSRLWIPCDENTFLDVVRCSGAPQHQRN 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2142624 AT5G03310 "AT5G03310" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/81 (54%), Positives = 62/81 (76%)

Query:    15 EEYSIPKDVPKGHVVVYVG---EECKRFVIKVSLLEHPLFKALLDRA-EEAFE-FATG-S 68
             ++Y IP DVPKGH+VVYVG   E  KRFVIK++LL  P+F+ALLD++ +EA++ F +G S
Sbjct:    31 DQYHIPHDVPKGHLVVYVGKDEETYKRFVIKITLLHDPIFRALLDQSKDEAYDDFTSGDS 90

Query:    69 KLRIPCNESIFRSILYFASPQ 89
             KL I C+E++F  +L  ASP+
Sbjct:    91 KLCIACDETLFLEVLRCASPR 111

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 34/69 (49%), Positives = 44/69 (63%)

Query:    19 IPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESI 78
             +P DVP GHV VYVG  C+RFV++ + L HP+ + LL +AEE F F     L IPC ES+
Sbjct:    38 VPSDVPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESV 97

Query:    79 FRSILYFAS 87
             F   + F S
Sbjct:    98 FEESIRFIS 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 35/68 (51%), Positives = 43/68 (63%)

Query:    18 SIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNES 77
             S+P DVP GHV VYVG  C+RFV+  + L HP+   LL +AEE F FA    L IPC ES
Sbjct:    36 SVPSDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEES 95

Query:    78 IFRSILYF 85
             +F   + F
Sbjct:    96 VFEESIRF 103

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query:    15 EEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPC 74
             +E  +P DVPKGH  VYVGE+  R+++ +S L HP FK+LL +AEE F F     L IPC
Sbjct:    32 DEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPC 91

Query:    75 NESIFRSI 82
              E +FRS+
Sbjct:    92 EEVVFRSL 99

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 35/69 (50%), Positives = 43/69 (62%)

Query:    19 IPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESI 78
             +P DVP GHV V VG  C+RFV++ S L HP+   LL +AEE F FA    L IPC ES+
Sbjct:    37 VPSDVPSGHVAVCVGSGCRRFVVRASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESV 96

Query:    79 FRSILYFAS 87
             F   + F S
Sbjct:    97 FEEAIRFIS 105

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/71 (49%), Positives = 48/71 (67%)

Query:    12 GTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLR 71
             G DE+  +P DVPKGH  VYVGE   R+++ +S L HP F++LL RAEE F F     L 
Sbjct:    33 GYDED-CLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLT 91

Query:    72 IPCNESIFRSI 82
             IPC+E +F+++
Sbjct:    92 IPCDELVFQTL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 37/71 (52%), Positives = 45/71 (63%)

Query:    12 GTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLR 71
             G DE  S P +VPKGH VVYVGE   R+V+ +S L  P F+ LL +AEE F F     L 
Sbjct:    34 GEDENGS-PLNVPKGHFVVYVGENRVRYVVPISFLTRPEFQLLLQQAEEEFGFDHDMGLT 92

Query:    72 IPCNESIFRSI 82
             IPC E +FRS+
Sbjct:    93 IPCEEVVFRSL 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 33/64 (51%), Positives = 41/64 (64%)

Query:    20 PKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIF 79
             P DVPKG++ VYVG E +RF+I  S L H LFK LL++AEE F F     L IPC    F
Sbjct:    76 PHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETF 135

Query:    80 RSIL 83
             + +L
Sbjct:   136 KYLL 139

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-29
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	8e-22
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	4e-15
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-15

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  100 bits (250), Expect = 3e-29
 Identities = 37/76 (48%), Positives = 44/76 (57%)

Query: 8  CCFKGTDEEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATG 67
                    S   DVPKGH  VYVGEE +RFV+ +S L HPLF+ LLDRAEE F F   
Sbjct: 20 SGRSRGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQD 79

Query: 68 SKLRIPCNESIFRSIL 83
            L IPC+  +F  +L
Sbjct: 80 GGLTIPCDVVVFEHLL 95

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 81.7 bits (202), Expect = 8e-22
 Identities = 34/69 (49%), Positives = 45/69 (65%)

Query: 15  EEYSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPC 74
           +E  +P DVPKGH  VYVGE   R+++ +S L HP F++LL +AEE F F     L IPC
Sbjct: 32  DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPC 91

Query: 75  NESIFRSIL 83
            E +FRS+ 
Sbjct: 92  EEVVFRSLT 100

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 64.8 bits (157), Expect = 4e-15
 Identities = 35/66 (53%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 23  VPKGHVVVYVGE----ECKRFVIKVSLLEHPLFKALLDRAEEAFEFA-TGSKLRIPCNES 77
           VPKGHV VYVGE    E KRFV+ +S L HP FK  L RAEE F F      L IPC E 
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 78  IFRSIL 83
           +F  ++
Sbjct: 95  VFLDLI 100

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 64.8 bits (157), Expect = 4e-15
 Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 23 VPKGHVVVYVGE--ECKRFVIKVSLLEHPLFKALLDRAEE--AFEFATGSKLRIPCNESI 78
          VPKGHV VYVGE  E KRFV+ +S L HPLF+  L+RAEE   F  + G  L IPC E  
Sbjct: 39 VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGG-LTIPCREES 97

Query: 79 F 79
          F
Sbjct: 98 F 98

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	88.94
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	88.67
PRK02899	197	adaptor protein; Provisional	88.28
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	86.51
PRK02315	233	adaptor protein; Provisional	84.68

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=209.21  Aligned_cols=80  Identities=44%  Similarity=0.823  Sum_probs=72.4

Q ss_pred             eeecCCCCCC---CCCCCCCCCCeEEEEEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCccCCCcEEeccCHHHHHHHH
Q 048483            7 WCCFKGTDEE---YSIPKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSIL   83 (99)
Q Consensus         7 ~c~~~~~~~~---~~~~~~vpkG~~~VYVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl   83 (99)
                      +|.|.+..++   ...|.+|||||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++
T Consensus        21 r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll  100 (104)
T PLN03090         21 RCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLT  100 (104)
T ss_pred             HHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHH
Confidence            4655554443   2478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh
Q 048483           84 YFA   86 (99)
Q Consensus        84 ~~~   86 (99)
                      |+|
T Consensus       101 ~~i  103 (104)
T PLN03090        101 SMI  103 (104)
T ss_pred             HHh
Confidence            998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.1e-35  Score=202.87  Aligned_cols=68  Identities=51%  Similarity=0.965  Sum_probs=66.0

Q ss_pred             CCCCCCCeEEEEEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCccCCCcEEeccCHHHHHHHHHHhC
Q 048483           20 PKDVPKGHVVVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFAS   87 (99)
Q Consensus        20 ~~~vpkG~~~VYVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~~~   87 (99)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|+++||+++
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=9.3e-34  Score=198.21  Aligned_cols=74  Identities=46%  Similarity=0.753  Sum_probs=67.2

Q ss_pred             CCCCCCCCCCCCCCCeEEEEEcC--CCeEEEEEcCccCcHHHHHHHHHHHHhcCccC-CCcEEeccCHHHHHHHHHH
Q 048483           12 GTDEEYSIPKDVPKGHVVVYVGE--ECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT-GSKLRIPCNESIFRSILYF   85 (99)
Q Consensus        12 ~~~~~~~~~~~vpkG~~~VYVG~--e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~   85 (99)
                      ...++.+.+.+|||||+|||||+  +++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++||..
T Consensus        28 ~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         28 SPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            34445567789999999999997  58999999999999999999999999999998 5999999999999999975

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1e-33  Score=197.24  Aligned_cols=70  Identities=51%  Similarity=0.856  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCCeEEEEEcC----CCeEEEEEcCccCcHHHHHHHHHHHHhcCccC-CCcEEeccCHHHHHHHHHH
Q 048483           16 EYSIPKDVPKGHVVVYVGE----ECKRFVIKVSLLEHPLFKALLDRAEEAFEFAT-GSKLRIPCNESIFRSILYF   85 (99)
Q Consensus        16 ~~~~~~~vpkG~~~VYVG~----e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~   85 (99)
                      +.+.+.+|||||||||||+    +++||+||++|||||.|++||++|||||||+| +|+|+|||+++.|++++..
T Consensus        28 ~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         28 SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             cccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            3357789999999999997    58999999999999999999999999999998 5999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=88.94  E-value=0.37  Score=31.05  Aligned_cols=59  Identities=19%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             EEEEcCCCeEEEEEcCccC-c--HHHHHHHHHHHHhcCccCCCcEEeccCHHHHHHHHHHhCCC
Q 048483           29 VVYVGEECKRFVIKVSLLE-H--PLFKALLDRAEEAFEFATGSKLRIPCNESIFRSILYFASPQ   89 (99)
Q Consensus        29 ~VYVG~e~kRfvVp~~~L~-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~~~~~~   89 (99)
                      .+=||  .++|.++.+-|. +  ..|..|++.......-+.+|.+-|-.+...|++||.-++.+
T Consensus         2 ~lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    2 RLNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            34577  699999999887 4  47888888653222224569999999999999999988874

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=88.67  E-value=4.1  Score=25.19  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             EEEEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCcc----------CCC-cEEeccCHHHHHHHHHHhCCCCC
Q 048483           29 VVYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFA----------TGS-KLRIPCNESIFRSILYFASPQRD   91 (99)
Q Consensus        29 ~VYVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~~~~~~~   91 (99)
                      -++-+++.+||.+|.   .++.|.+|..+..+.|+..          .+| .++|..+ ..++.++......+.
T Consensus         4 K~~~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~~~~   73 (81)
T cd05992           4 KVKYGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARRSGS   73 (81)
T ss_pred             EEEecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhhcCC
Confidence            355566899999998   7888999999988888875          134 3555554 678888887765333

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PRK02899 adaptor protein; Provisional

Probab=88.28  E-value=0.49  Score=35.77  Aligned_cols=25  Identities=20%  Similarity=0.595  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCcEEe
Q 048483           48 HPLFKALLDRAEEAFEFATGSKLRI   72 (99)
Q Consensus        48 hP~F~~LL~~aeeEfG~~~~G~L~I   72 (99)
                      +-+|.++|++|..|+||..+|+|+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3567778999999999999999976

>smart00666 PB1 PB1 domain

Probab=86.51  E-value=3.4  Score=25.76  Aligned_cols=56  Identities=13%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             EEEcCCCeEEEEEcCccCcHHHHHHHHHHHHhcCcc----------CCC-cEEeccCHHHHHHHHHHhCCCC
Q 048483           30 VYVGEECKRFVIKVSLLEHPLFKALLDRAEEAFEFA----------TGS-KLRIPCNESIFRSILYFASPQR   90 (99)
Q Consensus        30 VYVG~e~kRfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~G-~L~IPC~~~~Fe~vl~~~~~~~   90 (99)
                      |+-|++.+||.||-    ...|.+|..+..+.|+..          .+| .++|.++. .+..++.+.....
T Consensus         6 ~~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~~~   72 (81)
T smart00666        6 LRYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDSLG   72 (81)
T ss_pred             EEECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHHcC
Confidence            34477899999986    677999999999888874          244 67888855 5677777665443

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK02315 adaptor protein; Provisional

Probab=84.68  E-value=0.8  Score=35.31  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCcEEe
Q 048483           48 HPLFKALLDRAEEAFEFATGSKLRI   72 (99)
Q Consensus        48 hP~F~~LL~~aeeEfG~~~~G~L~I   72 (99)
                      +-.|.++|++|..|+||..+|+|+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4589999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00