Citrus Sinensis ID: 048511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN
Secondary Structure (PSIPRED)
cccccccEEEEEccccccEEEEEEcccccccEEEEEEEccccccccccccEEEEccccccEEEEEcccccccccccccccccEEEEEEcccccEEEEcccccEEEEccccccccccEEEEEEcccccccccccccccccEEEEccccccEEEEccccccccEEEEEEEEEEEEEEccEEEEEEcccccEEEEEcccccEEEEccccccccccEEccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccEEEEccccccccccEEEEEEEcccccEEEEcccccEEEEEEcccHHHHHccccccEEEEEEEccccccEEEcccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccccEEEEEEEcccccEEEEEEccccccccccccEEEEEEccccEEEEEEEcccccEEcEccccccEEEEEEEcccccEEEEcccccEEEEEHHccccccEEEEEEEcccccccccccccccccEEEEEccccEEEEEEccccccEEEEEEEEEEEcccccEEEEEEEcccccEEEEEEcccEEEEEEEccccccccEEEEEcccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccEEEEEcccccccEEEEEEEEccccccEEEEcccccEEEEEEccHHHHHHHHHccccccccccccccccccccccccEccccccEEEEc
Coil and Loop (DISEMBL)
mggldnkihlyrgqrtgkfvracelkghtdwirsldfslpvctsgeAISILLVSSSQDKVIRIWKLAlrgssantqSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHedwvysvqweppstapsdgvscqqpssilsasmdktmmiwqpekttgiWMNVVTVGELShsalgfygghwspdgrsilahgyggaFHLWRNvgvdidnwqpqkvpsghfaavmdiswsrssDYLLSVshdqttrvfAPWKNVASlmgenswhevarpqvhghdincvtiiqgkgnhrfvsgadEKVARVFEAPLSFLKTLNhatfqessfhedLQADVQILGANMsalglsqkpiyvn
Flexible Loop (DISEMBL)
mggldnkihlyrgqrtgKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLalrgssantqstYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPStapsdgvscQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMsalglsqkpiyvn
Low Complexity Region (SEG)
MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN
Disordered region (IsUnstruct)
******KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQW**************************TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSAL**********
Disordered Region (DISOPRED)
MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS****STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHED******I*GANMSALGLSQKP*Y**
Disordered Region (DISEMBL)
MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEP************QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN
Disordered Region (DISPRO)
***LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATF**********ADVQILGANMSALGLSQKPIYVN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
F4I1S7	838	Elongator complex protein	yes	no	0.985	0.412	0.717	1e-144
Q05AM5	821	Elongator complex protein	yes	no	0.923	0.394	0.417	8e-69
Q6IA86	826	Elongator complex protein	yes	no	0.917	0.389	0.393	1e-66
Q5EBD9	824	Elongator complex protein	yes	no	0.937	0.399	0.396	6e-66
Q91WG4	831	Elongator complex protein	yes	no	0.934	0.394	0.401	3e-65
Q496Z0	821	Elongator complex protein	yes	no	0.923	0.394	0.387	1e-62
Q86H45	901	Probable elongator comple	yes	no	0.974	0.379	0.370	6e-60
Q7K4B3	794	Probable elongator comple	yes	no	0.877	0.387	0.384	3e-59
O94533	760	Elongator complex protein	yes	no	0.806	0.372	0.354	6e-45
P42935	788	Elongator complex protein	yes	no	0.820	0.365	0.333	8e-40

>sp|F4I1S7|ELP2_ARATH Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/357 (71%), Positives = 293/357 (82%), Gaps = 11/357 (3%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDK 59
           +GGLDNKI LY G+RTGKF   CELKGHTDWIRSLDFSLP+ T+ E   SI+LVSSSQDK
Sbjct: 193 LGGLDNKIKLYSGERTGKFTSVCELKGHTDWIRSLDFSLPLHTTEEIPNSIMLVSSSQDK 252

Query: 60  VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYS 119
           VIRIWKL L G       ++R+E I+LASYIEGPV V+G+ +YQ+SVES+LIGHEDWVYS
Sbjct: 253 VIRIWKLVLVGDVG----SWRRE-ITLASYIEGPVFVSGTFTYQISVESVLIGHEDWVYS 307

Query: 120 VQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178
           V+W+PP     DG +   QP SILSASMDKTMMIW+PEK TG+W+NVV VGELSH ALGF
Sbjct: 308 VEWQPPVIDFIDGRLVNHQPLSILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCALGF 367

Query: 179 YGGHWSPDGRSILAHGYGGAFHLWRNVGV--DIDNWQPQKVPSGHFAAVMDISWSRSSDY 236
           YGGHWSP+  SILAHGYGGAFHLWRNV    + +NWQ QKVPSGHFAAV D++W+R+ +Y
Sbjct: 368 YGGHWSPNSLSILAHGYGGAFHLWRNVSSSKESENWQMQKVPSGHFAAVTDVTWARTGEY 427

Query: 237 LLSVSHDQTTRVFAPWKNVASLMGENS-WHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295
           LLSVS DQTTRVF+ WKN      E+  WHE+ARPQVHGHDINCV ++QGKGNHRFVSGA
Sbjct: 428 LLSVSQDQTTRVFSAWKNDEGNEAEDEHWHELARPQVHGHDINCVAMVQGKGNHRFVSGA 487

Query: 296 DEKVARVFEAPLSFLKTLNHATF-QESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           +EKV RVFEAPLSFLKTLNH     E SF EDLQADVQ+LGANMSALGLSQKPIY++
Sbjct: 488 EEKVVRVFEAPLSFLKTLNHTCAGGEGSFPEDLQADVQVLGANMSALGLSQKPIYLH 544

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (By similarity). Promotes organs development by modulating cell division rate. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. Accelerator of defense gene induction required for rapid defense gene induction, and for the establishment of both basal and effector-triggered immunity (ETI), in a NPR1-independent manner, but is not required for systemic acquired resistance (SAR) establishment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05AM5|ELP2_DANRE Elongator complex protein 2 OS=Danio rerio GN=elp2 PE=2 SV=1

 Score =  260 bits (665), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 146/350 (41%), Positives = 213/350 (60%), Gaps = 26/350 (7%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           GG D+++HLY  Q +G+F R   L GH DW+R ++++      GE   + L S SQD +I
Sbjct: 174 GGDDSRVHLYV-QLSGQFQRVLTLTGHEDWVRGVEWAN---KDGE---LWLASCSQDCLI 226

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           R+W+L      A T +    +   +    E    V+G   + V++E++L GHE+WVY + 
Sbjct: 227 RVWRLF-----AKTAAEPDLQTDGIIKMKENIFQVSGEE-FAVTLETVLAGHENWVYGIH 280

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+PPS     G S +Q   +LSASMDKTM++W PE+ +G+W+ +V VGE+  + LGFYG 
Sbjct: 281 WQPPSVK---GDSVEQSLKLLSASMDKTMILWGPEEDSGMWVEMVRVGEVGGNTLGFYGC 337

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
             SPDG  ILAH + GA HLW +       W+P  V SGHF AV D+SW    +++++V 
Sbjct: 338 QMSPDGSMILAHAFHGALHLWHHDSN--QEWRPSVVISGHFNAVQDMSWDPEGEFIITVG 395

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
            DQTTR+F PW    S   + +WHE++RPQ+HG+D+ C+T++   G  +FVSGADEKV R
Sbjct: 396 SDQTTRLFTPWTRKGS--SQITWHEISRPQIHGYDMQCLTMV---GRFQFVSGADEKVLR 450

Query: 302 VFEAPLSFLKTLNH--ATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
           VF+AP +F++   H   T  E     +  AD+   GA+  ALGLS K ++
Sbjct: 451 VFKAPRNFVENFAHISGTSLEKLLGCNDIADLP-EGASTPALGLSNKAVF 499

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Danio rerio (taxid: 7955)

>sp|Q6IA86|ELP2_HUMAN Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=1 SV=2

 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 207/356 (58%), Gaps = 34/356 (9%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D +IH++  Q+  +F +   L GH DWIR ++++           + L S SQD +I
Sbjct: 181 GNDDCRIHIF-AQQNDQFQKVLSLCGHEDWIRGVEWA------AFGRDLFLASCSQDCLI 233

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           RIWKL ++ +S  TQ      +      IE   +     ++ V++E++L GHE+WV +V 
Sbjct: 234 RIWKLYIKSTSLETQDDDNIRLKENTFTIENESV---KIAFAVTLETVLAGHENWVNAVH 290

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+P      DGV  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFY  
Sbjct: 291 WQP--VFYKDGV-LQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDC 347

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
            ++ DG  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++V 
Sbjct: 348 QFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVG 407

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
            DQTTR+FAPWK       + +WHE+ARPQ+HG+D+ C+ +I      +FVSGADEKV R
Sbjct: 408 TDQTTRLFAPWKR--KDQSQVTWHEIARPQIHGYDLKCLAMI---NRFQFVSGADEKVLR 462

Query: 302 VFEAPLSFL--------KTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
           VF AP +F+        ++LNH    + S   DL       GA + ALGLS K ++
Sbjct: 463 VFSAPRNFVENFCAITGQSLNHVLCNQDS---DLPE-----GATVPALGLSNKAVF 510

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Homo sapiens (taxid: 9606)

>sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus tropicalis GN=elp2 PE=2 SV=1

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 210/351 (59%), Gaps = 22/351 (6%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D++IHLY  Q   +F +   L GH DWIR +++++    +G+  ++ L S +QD +I
Sbjct: 176 GADDSRIHLYVLQNE-QFEKTQVLHGHEDWIRGVEWAV----TGQ--NLFLASCAQDCLI 228

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           RIWK+  R ++     T  +  I L   I         +SY V++E++L GHE+ +Y+V 
Sbjct: 229 RIWKI-FRKTAKENSKTEDENSIKLKENIFKVKEKDTETSYAVTLETVLTGHENSIYAVH 287

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+P  +   DG S  QP S+LSASMDKTM++W+P++ +G+W+  V VGE+  + LGF G 
Sbjct: 288 WQP--SFSRDG-SIVQPMSLLSASMDKTMILWEPDEESGVWLEQVRVGEVGGNTLGFLGC 344

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
            +SPD   ILAH + GA HLW       + W P  + SGHF +V D+ W     ++++VS
Sbjct: 345 QFSPDKSMILAHAFHGALHLWSRAPNKQNEWIPMVIISGHFDSVQDMRWDPDGQFVITVS 404

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
            DQTTR+F PWK         +WHE+ARPQ+HG+D+ C+ +I   G  +FVSGADEKV R
Sbjct: 405 ADQTTRLFGPWKKKG--QSHVTWHEIARPQIHGYDMQCLAMI---GRFQFVSGADEKVLR 459

Query: 302 VFEAPLSFLKTLNH---ATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
           VF AP +F++  ++    + ++   +ED        GA + ALGLS K ++
Sbjct: 460 VFAAPRNFIENFSNISCISVEKLLLNEDTNLPE---GATVPALGLSNKAVF 507

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Xenopus tropicalis (taxid: 8364)

>sp|Q91WG4|ELP2_MOUSE Elongator complex protein 2 OS=Mus musculus GN=Elp2 PE=1 SV=1

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/351 (40%), Positives = 212/351 (60%), Gaps = 23/351 (6%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D +IHLY  Q+  +F +A  L GH DWIR ++++    T G    + L S SQD +I
Sbjct: 181 GDDDCRIHLYI-QQDDQFQKALSLCGHEDWIRGVEWA----TFGR--DLFLASCSQDCLI 233

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           RIW+L ++ +S  T+    +   +  +  +G V     ++  V++E++L GHE+WV +V 
Sbjct: 234 RIWRLYMKPASFETKDGSLRLKENTFTIKDGGV----RTTVAVTLETVLAGHENWVNAVH 289

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+P  +   DGV  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFY  
Sbjct: 290 WQP--SFYKDGV-LQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDC 346

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
            +  +G  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++ S
Sbjct: 347 QFGENGTMIIAHAFHGALHLWKQSTVNPRQWAPEIVISGHFDGVQDLMWDPEGEFIITTS 406

Query: 242 HDQTTRVFAPWKNVASL-MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
            DQTTR+FAPWK        + +WHE+ARPQ+HG++I C+ +I      +FVSGADEKV 
Sbjct: 407 TDQTTRLFAPWKKKDQKDRSQVTWHEIARPQIHGYNIKCLAMID---RFQFVSGADEKVL 463

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQIL--GANMSALGLSQKPIY 349
           RVF AP +F++  +  + Q  S    +  D Q L  GA + ALGLS K ++
Sbjct: 464 RVFSAPRNFVENFSVISRQSLSH---MLCDDQDLPEGATVPALGLSNKALF 511

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Mus musculus (taxid: 10090)

>sp|Q496Z0|ELP2_RAT Elongator complex protein 2 OS=Rattus norvegicus GN=Elp2 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 206/343 (60%), Gaps = 19/343 (5%)

Query: 7   KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL 66
           +IHL+  Q+   F +   L GH DWIR ++++    T G    + L S SQD +IRIW+L
Sbjct: 186 RIHLFV-QQDDWFQKMLSLCGHEDWIRGVEWA----TFGR--DLFLASCSQDCLIRIWRL 238

Query: 67  ALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126
            ++ +S  T+    +   +  +  +G V    S++  V +E++L GHE+WV ++ W+P  
Sbjct: 239 YMKPTSLETEDGSIRLKENTFTIKDGGV----STTVAVILETVLAGHENWVNAIHWQP-- 292

Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
           +   DGV   QP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFYG  +  +
Sbjct: 293 SFYKDGV-LHQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYGCQFGEN 351

Query: 187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT 246
           G  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++ S DQTT
Sbjct: 352 GSMIIAHAFHGAMHLWKQSTVNPRQWAPEIVISGHFDGVQDLIWDPEGEFIITTSTDQTT 411

Query: 247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
           R+FAPWK       + +WHE+ARPQ+HG+++ C+ +I      +FVSGADEKV RVF AP
Sbjct: 412 RLFAPWKK--KNQSQVTWHEIARPQIHGYNLKCLAMID---RFQFVSGADEKVLRVFSAP 466

Query: 307 LSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
            +F++  +  + Q  S     + +    GA + ALGLS K ++
Sbjct: 467 RNFVENFSVISRQSLSHMLYDEDNDLPEGATVPALGLSNKAVF 509

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4.

Rattus norvegicus (taxid: 10116)

>sp|Q86H45|ELP2_DICDI Probable elongator complex protein 2 OS=Dictyostelium discoideum GN=elp2 PE=3 SV=1

 Score =  231 bits (589), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/383 (37%), Positives = 201/383 (52%), Gaps = 41/383 (10%)

Query: 1   MGGLDNKIHLY-----RGQRTGKFVRACELKGHTDWIRSLDFSL--PVCTSGEAISILLV 53
           +GGL+ KIH+Y         T +F +   L+GH DWIRSL F         GE   ++L 
Sbjct: 194 VGGLEPKIHIYIQNLDSTTATLQFKKLMSLQGHQDWIRSLSFKTINEGEGEGEEEELILA 253

Query: 54  SSSQDKVIRIWKLALRGSSANTQ-----------------STYRKEVISLASYIEGPVLV 96
           SSSQD  IR+WK++   +    Q                 ST    V SL++  +G +  
Sbjct: 254 SSSQDFKIRLWKISKFTAEKQKQQQLDESGNGGANLLGSLSTQLSGVTSLST--KGYLFN 311

Query: 97  AGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE 156
             S  Y + ++++L GH+DWVYS+ W P       G   Q+   ++SASMDKT ++W+P+
Sbjct: 312 CNSVKYIILLDAVLSGHDDWVYSIHWSPARRDQETGKKIQE-QMLISASMDKTAIVWRPD 370

Query: 157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR-NVGVDIDNWQPQ 215
           +TTGIW++   VG++  + LG YG  +SP  + IL+HGY GAFH W+ N       W+PQ
Sbjct: 371 RTTGIWIDESRVGDMGGNILGQYGAVFSPCSQYILSHGYNGAFHFWKQNTNQKSSFWEPQ 430

Query: 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN--------SWHEV 267
            V SGHF  V D+ WS    Y +S S D+T R+F+ WK   +             SW+E+
Sbjct: 431 IVVSGHFGPVQDLMWSPDYSYFISCSTDRTLRLFSEWKRNNNNNNLENNKEQQIISWNEI 490

Query: 268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDL 327
           ARPQ+HG+D+ C T I  K  H  VSGA+EK+ R F    +F+ TL       S      
Sbjct: 491 ARPQIHGYDLECFTFIN-KKTHVIVSGAEEKIMRAFVGSQNFVDTL----LNISKVQPVN 545

Query: 328 QADVQILGANMSALGLSQKPIYV 350
               + L AN  +LGLS KP + 
Sbjct: 546 DGTQRPLAANQPSLGLSNKPYFT 568

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7K4B3|ELP2_DROME Probable elongator complex protein 2 OS=Drosophila melanogaster GN=Elp2 PE=1 SV=1

 Score =  229 bits (583), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/338 (38%), Positives = 191/338 (56%), Gaps = 30/338 (8%)

Query: 18  KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS 77
           +F R  +L GH DW+R LDF       GE   +LL S SQD  IR+W++A R  S     
Sbjct: 194 QFQRKHKLTGHEDWVRGLDF----VVDGE--DLLLASGSQDNFIRLWRIAPR--SKEQMQ 245

Query: 78  TYRKEVISLAS-----YIEGPVLVAGSSS-YQVSVESLLIGHEDWVYSVQWEPPSTAPSD 131
             R ++  L+       +E  +L  G  + Y VS+ES+L GHE W+Y V W         
Sbjct: 246 ENRVDLHQLSHNDDEIKVEEKILQLGKEAWYAVSLESVLYGHEGWIYGVHWHK------- 298

Query: 132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL 191
             +  Q   +LSAS+DKT++IW P +  GIW+  V VGE+  +++GFYGG +S DG SI+
Sbjct: 299 --TPDQELRLLSASIDKTVIIWAPTEE-GIWLEEVRVGEVGGNSVGFYGGKFSGDGHSIM 355

Query: 192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP 251
           AH Y G FH+W         W P  +  GH+  V D++W  S  YL++ S DQTTR+ AP
Sbjct: 356 AHSYQGGFHIWSQDPDRPQLWTPGVIVGGHYGEVRDLAWEHSGAYLMTASADQTTRLHAP 415

Query: 252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLK 311
           W    +     +WHE+ARPQ+HG+D+  + ++     ++F SGA+EK+ R F+AP +F++
Sbjct: 416 WLQDGA---NPTWHELARPQIHGYDMQALALL---SRYKFASGAEEKIVRTFQAPANFIE 469

Query: 312 TLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
              H +  E+    D+  D    GA++ +LGLS K +Y
Sbjct: 470 NFRHISGIENDDAGDVLLDSLPKGASVPSLGLSNKAVY 507

Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (By similarity). Involved in the regulation of the STAT pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O94533|ELP2_SCHPO Elongator complex protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp2 PE=3 SV=1

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 177/333 (53%), Gaps = 50/333 (15%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-YRKEV 83
           L+GH DW+R+L F     TSG   +  L S SQD+ IR+W ++L GS     S  + + V
Sbjct: 187 LRGHLDWVRTLSFKK---TSGSTAT--LASGSQDRYIRLWNISLWGSEDEKVSEEFFESV 241

Query: 84  ISLASYIEGPV-LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL 142
           +S       PV    G    ++  ++LL+GHEDWV SV W P                IL
Sbjct: 242 LS-----NKPVRFTLGKIDLKIVFDALLMGHEDWVMSVDWHPTKEM------------IL 284

Query: 143 SASMDKTMMIWQPEKTTGIWMNVVTVGEL--SH-------SALGFYGGHWSPDGRSILAH 193
           S+S D +M++W+P+  TGIW+    +GE+  SH       SA GF+GG W+P+G  ++  
Sbjct: 285 SSSADSSMIVWEPDTNTGIWVVTGRMGEMASSHGSTTATGSAGGFWGGLWNPNGNCVVCW 344

Query: 194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK 253
           G  G + LW+    D   W      SGH  +V  ++W     + LS   DQTTR+FA +K
Sbjct: 345 GRTGGWRLWKQ---DAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFK 401

Query: 254 NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL 313
                  +N+WHE+ARPQ+HG+D+  ++ +  +    F+S ADEKV+RVF+ P + ++ L
Sbjct: 402 K------DNAWHEMARPQIHGYDLTSISCMPSRIG--FLSCADEKVSRVFKFPKTIVRLL 453

Query: 314 NHATFQESSFHEDLQADVQILGANMSALGLSQK 346
                 +++  E+   D     AN+  LGLS K
Sbjct: 454 YR--LCDTNIGEESLPD----AANVPLLGLSNK 480

Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. Independently, elp2 may be involved in polarized exocytosis. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P42935|ELP2_YEAST Elongator complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELP2 PE=1 SV=1

 Score =  164 bits (416), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 178/342 (52%), Gaps = 54/342 (15%)

Query: 24  ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83
           EL+GH DW++SL F     T G+    LL S SQD+ IR+W++ +     +++   +K  
Sbjct: 197 ELEGHEDWVKSLAFRHQE-TPGD---YLLCSGSQDRYIRLWRIRINDLIDDSEEDSKK-- 250

Query: 84  ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143
           ++L S  +    +       ++ E+L++GH+DW+ S+QW             +    +L+
Sbjct: 251 LTLLSNKQYKFQIDDELRVGINFEALIMGHDDWISSLQWH------------ESRLQLLA 298

Query: 144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWS------PDGRSILAH 193
           A+ D ++M+W+P++T+GIW+  + +GE+S     +A G  GG WS            L +
Sbjct: 299 ATADTSLMVWEPDETSGIWVCSLRLGEMSSKGASTATGSSGGFWSCLWFTHERMDFFLTN 358

Query: 194 GYGGAFHLW---RNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G  G++ +W    N+  D      Q++  SG    V DI+WS S +YLL+ S DQTTR+F
Sbjct: 359 GKTGSWRMWATKDNIICD------QRLGISGATKDVTDIAWSPSGEYLLATSLDQTTRLF 412

Query: 250 APWKNVASLMGEN--SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP- 306
           APW   AS       +WHE +RPQ+HG+D+ CV  +    + RFVSG DEK+ R F+ P 
Sbjct: 413 APWIYDASGRKREIATWHEFSRPQIHGYDMICVETVT---DTRFVSGGDEKILRSFDLPK 469

Query: 307 --LSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQK 346
                L+      F+E S   D         A +  LGLS K
Sbjct: 470 GVAGMLQKFVGIQFEEKSEMPD--------SATVPVLGLSNK 503

Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. It functions as a gamma-toxin target (TOT); disruption of the complex confers resistance to Kluyveromyces lactis toxin zymocin (pGKL1 killer toxin). May also be involved in sensitiviy to Pichia inositovora toxin. May be involved in tRNA modification. ELP2 is dispensable for the complex integrity and, in vitro, is not required for complex HAT activity. It is not required for the association of the complex with nascent RNA transcript. Independently, ELP2 may be involved in polarized exocytosis. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
255570663	846	nucleotide binding protein, putative [Ri	1.0	0.414	0.794	1e-167
225424087	839	PREDICTED: probable elongator complex pr	0.997	0.417	0.791	1e-162
297737769	801	unnamed protein product [Vitis vinifera]	0.997	0.436	0.791	1e-162
449435208	837	PREDICTED: elongator complex protein 2-l	0.994	0.416	0.763	1e-157
449526585	837	PREDICTED: elongator complex protein 2-l	0.994	0.416	0.760	1e-157
356575590	832	PREDICTED: elongator complex protein 2-l	0.988	0.417	0.756	1e-154
356536278	839	PREDICTED: elongator complex protein 2-l	0.991	0.414	0.74	1e-151
223945893	658	unknown [Zea mays]	0.991	0.528	0.683	1e-143
414869245	717	TPA: harpin-induced protein, mRNA [Zea m	0.991	0.485	0.683	1e-143
297852630	839	nucleotide binding protein [Arabidopsis	0.985	0.412	0.717	1e-143

>gi|255570663|ref|XP_002526286.1| nucleotide binding protein, putative [Ricinus communis] gi|223534367|gb|EEF36075.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/351 (79%), Positives = 311/351 (88%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLD+KIHLY G+RTGKF+ ACELK HTDWIRSLDFSLP+C  GE  SI LVSSSQDK 
Sbjct: 199 MGGLDSKIHLYCGERTGKFIHACELKAHTDWIRSLDFSLPICMEGEGNSIFLVSSSQDKG 258

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+ALRGS AN++ TYRKE ISLASYIEGPV+VAGSSSYQ+S+ESLLIGHEDWVYSV
Sbjct: 259 IRIWKMALRGSLANSEGTYRKEEISLASYIEGPVIVAGSSSYQISLESLLIGHEDWVYSV 318

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
           +W+PPST  ++G    QP SILSASMDKTMMIWQPE+ +GIWMNVVTVGELSHSALGFYG
Sbjct: 319 EWQPPSTTLAEGTIYHQPQSILSASMDKTMMIWQPERKSGIWMNVVTVGELSHSALGFYG 378

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           GHWS DG SILAHG+GGAFH+W+N+GV +DNWQPQKVP+GHFA V DISW++S +Y+LSV
Sbjct: 379 GHWSSDGLSILAHGFGGAFHMWKNIGVGMDNWQPQKVPTGHFAPVTDISWAKSGEYILSV 438

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR+FAPW N  S     SWHE+ARPQVHGHDINCV+I+QGKGNHRFVSGADEKVA
Sbjct: 439 SHDQTTRIFAPWINETSPHNGESWHEIARPQVHGHDINCVSIVQGKGNHRFVSGADEKVA 498

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           RVFEA LSFLKTLNHATFQ S+F   LQ DVQILGANMSALGLSQKPIYV+
Sbjct: 499 RVFEASLSFLKTLNHATFQNSNFPVGLQVDVQILGANMSALGLSQKPIYVH 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424087|ref|XP_002282940.1| PREDICTED: probable elongator complex protein 2-like [Vitis vinifera]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/350 (79%), Positives = 312/350 (89%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           GGLDNK+HLY G+RTGKFV ACELKGHTDWIRSLDFSLP+CT+    S+LLVSSSQD+ I
Sbjct: 193 GGLDNKVHLYCGERTGKFVHACELKGHTDWIRSLDFSLPICTNDGTSSLLLVSSSQDRGI 252

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           RIWK+A   S +N++ T+R+E ISLASYIEGPVLVAGSSSYQ+S+ESLLIGHEDWVYSV+
Sbjct: 253 RIWKMASCSSQSNSKGTFREEKISLASYIEGPVLVAGSSSYQISLESLLIGHEDWVYSVE 312

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+PPS   ++G +  QP SILSASMDKTMMIWQPE+TTGIWMNVVTVGELSH ALGFYGG
Sbjct: 313 WQPPSVTSANGFAYYQPQSILSASMDKTMMIWQPERTTGIWMNVVTVGELSHCALGFYGG 372

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
           HWSP+G SILAHGYGG+FHLW+NVG++ DNWQPQKVPSGH+AAV DI+W+RS +YLLSVS
Sbjct: 373 HWSPNGDSILAHGYGGSFHLWKNVGIEYDNWQPQKVPSGHYAAVTDIAWARSGEYLLSVS 432

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
            DQTTR+FA W+N AS  G + WHE+ARPQVHGHDINCVTII GKGNHRFVSGADEKVAR
Sbjct: 433 ADQTTRIFASWQNEASFGGSDCWHEIARPQVHGHDINCVTIIHGKGNHRFVSGADEKVAR 492

Query: 302 VFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           VFEAPLSFLKTLNHA  Q+SSF ED Q DVQILGANMSALGLSQKPIYV+
Sbjct: 493 VFEAPLSFLKTLNHAISQKSSFPEDFQVDVQILGANMSALGLSQKPIYVH 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737769|emb|CBI26970.3| unnamed protein product [Vitis vinifera]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/350 (79%), Positives = 312/350 (89%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           GGLDNK+HLY G+RTGKFV ACELKGHTDWIRSLDFSLP+CT+    S+LLVSSSQD+ I
Sbjct: 193 GGLDNKVHLYCGERTGKFVHACELKGHTDWIRSLDFSLPICTNDGTSSLLLVSSSQDRGI 252

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           RIWK+A   S +N++ T+R+E ISLASYIEGPVLVAGSSSYQ+S+ESLLIGHEDWVYSV+
Sbjct: 253 RIWKMASCSSQSNSKGTFREEKISLASYIEGPVLVAGSSSYQISLESLLIGHEDWVYSVE 312

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           W+PPS   ++G +  QP SILSASMDKTMMIWQPE+TTGIWMNVVTVGELSH ALGFYGG
Sbjct: 313 WQPPSVTSANGFAYYQPQSILSASMDKTMMIWQPERTTGIWMNVVTVGELSHCALGFYGG 372

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
           HWSP+G SILAHGYGG+FHLW+NVG++ DNWQPQKVPSGH+AAV DI+W+RS +YLLSVS
Sbjct: 373 HWSPNGDSILAHGYGGSFHLWKNVGIEYDNWQPQKVPSGHYAAVTDIAWARSGEYLLSVS 432

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
            DQTTR+FA W+N AS  G + WHE+ARPQVHGHDINCVTII GKGNHRFVSGADEKVAR
Sbjct: 433 ADQTTRIFASWQNEASFGGSDCWHEIARPQVHGHDINCVTIIHGKGNHRFVSGADEKVAR 492

Query: 302 VFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           VFEAPLSFLKTLNHA  Q+SSF ED Q DVQILGANMSALGLSQKPIYV+
Sbjct: 493 VFEAPLSFLKTLNHAISQKSSFPEDFQVDVQILGANMSALGLSQKPIYVH 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435208|ref|XP_004135387.1| PREDICTED: elongator complex protein 2-like [Cucumis sativus]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/351 (76%), Positives = 305/351 (86%), Gaps = 2/351 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLDNKIHLY  +R G+FV+ACELKGHTDWIRSLDFSLP+  +GEA +++LVSSSQD+ 
Sbjct: 194 MGGLDNKIHLYCAKRAGEFVKACELKGHTDWIRSLDFSLPMGKNGEANNVMLVSSSQDRG 253

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+AL GSSA+     +KE ISL SYI+GP+  AG  +YQVS+ESLLIGHEDWVYSV
Sbjct: 254 IRIWKMALHGSSADINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSV 313

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
           QW+PPS + ++G+   Q  SILSASMDKTMMIW+PEKT+GIWMNVVTVGELSH ALGFYG
Sbjct: 314 QWQPPSASETEGIP-YQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYG 372

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           GHWSP+G SILAHGYGG+FHLWRNVG   DNW+P KVPSGHFAAVMDISW+RS DY++SV
Sbjct: 373 GHWSPNGDSILAHGYGGSFHLWRNVGTSSDNWKPHKVPSGHFAAVMDISWARSGDYIISV 432

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR+F+PWK+V SL G  SWHE+ARPQVHGHDINCVTIIQGKGNHRFVSGA+EKVA
Sbjct: 433 SHDQTTRIFSPWKSVNSLEG-GSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVA 491

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           RVFEAPLSFLKTL+HAT      +ED   DVQILGANMSALGLSQKPIYV+
Sbjct: 492 RVFEAPLSFLKTLSHATLTNVVANEDHLVDVQILGANMSALGLSQKPIYVH 542

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526585|ref|XP_004170294.1| PREDICTED: elongator complex protein 2-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/351 (76%), Positives = 305/351 (86%), Gaps = 2/351 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLDNKIHLY  +R G+FV+ACELKGHTDWIRSLDFSLP+  +GEA +++LVSSSQD+ 
Sbjct: 194 MGGLDNKIHLYCAKRAGEFVKACELKGHTDWIRSLDFSLPMGKNGEANNVMLVSSSQDRG 253

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+AL G+SA+     +KE ISL SYI+GP+  AG  +YQVS+ESLLIGHEDWVYSV
Sbjct: 254 IRIWKMALHGTSADINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSV 313

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
           QW+PPS + ++G+   Q  SILSASMDKTMMIW+PEKT+GIWMNVVTVGELSH ALGFYG
Sbjct: 314 QWQPPSASETEGIP-YQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYG 372

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           GHWSP+G SILAHGYGG+FHLWRNVG   DNW+P KVPSGHFAAVMDISW+RS DY++SV
Sbjct: 373 GHWSPNGDSILAHGYGGSFHLWRNVGTSSDNWKPHKVPSGHFAAVMDISWARSGDYIISV 432

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR+F+PWK+V SL G  SWHE+ARPQVHGHDINCVTIIQGKGNHRFVSGA+EKVA
Sbjct: 433 SHDQTTRIFSPWKSVNSLEG-GSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVA 491

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           RVFEAPLSFLKTL+HAT      +ED   DVQILGANMSALGLSQKPIYV+
Sbjct: 492 RVFEAPLSFLKTLSHATLTNVVANEDHLVDVQILGANMSALGLSQKPIYVH 542

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575590|ref|XP_003555922.1| PREDICTED: elongator complex protein 2-like [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/349 (75%), Positives = 297/349 (85%), Gaps = 2/349 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLDNKIHLY G R+GKFV ACELKGHTDWIRSLDFSLP+  +GE  +I LVSSSQDK 
Sbjct: 190 MGGLDNKIHLYCGGRSGKFVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKG 249

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+ALR S +N     RK  ISL+SYIEGPVLVAGSSS+QVS+ESLLIGHEDWVYSV
Sbjct: 250 IRIWKMALRSSMSNGHGIDRKGEISLSSYIEGPVLVAGSSSFQVSLESLLIGHEDWVYSV 309

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
            W+PP  AP +  +  QP SILSASMDKTMMIWQPEKT+G+WMNVVTVGELSH ALGFYG
Sbjct: 310 MWQPPLVAPMEEDAYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYG 369

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           GHWSP+G SILAHGYGG+FHLW+NVG   DNW PQKVPSGHFA+V DI+W+RS DY++SV
Sbjct: 370 GHWSPNGDSILAHGYGGSFHLWKNVGN--DNWLPQKVPSGHFASVTDIAWARSGDYIMSV 427

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR++APWK  ASL     WHE+ARPQVHGHDINC+ +I  KGNHRF+ GA+EKVA
Sbjct: 428 SHDQTTRIYAPWKVEASLQDGEFWHEIARPQVHGHDINCMAVIHSKGNHRFLCGAEEKVA 487

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
           RVFEAPLSFLKTLN+AT Q+S   +D+  DVQILGANMSALGLSQKPIY
Sbjct: 488 RVFEAPLSFLKTLNNATLQKSCSSDDIMGDVQILGANMSALGLSQKPIY 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536278|ref|XP_003536666.1| PREDICTED: elongator complex protein 2-like [Glycine max]

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/350 (74%), Positives = 294/350 (84%), Gaps = 2/350 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLDNKIHLY G RT K V ACELKGHTDWIRSLDFSLP+  +GE  +I LVSSSQDK 
Sbjct: 197 MGGLDNKIHLYCGGRTRKLVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKG 256

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+ALR S +N     +K  ISL+SYIEGPVLVAGSSS+Q+S+ESLLIGHEDWVYSV
Sbjct: 257 IRIWKMALRSSMSNGHGIDKKGEISLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSV 316

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
            W+PP  A  +G +  QP SILSASMDKTMMIWQPEKT+ +WMNVVTVGELSH ALGFYG
Sbjct: 317 MWQPPLVASMEGDAYYQPQSILSASMDKTMMIWQPEKTSDVWMNVVTVGELSHCALGFYG 376

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           GHWSP+G SILAHGYGG+FHLW+NVG   DNW PQKVPSGHFA+V DI+W+RS DY++SV
Sbjct: 377 GHWSPNGDSILAHGYGGSFHLWKNVGN--DNWLPQKVPSGHFASVTDIAWARSGDYIMSV 434

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR++APWK  A L     WHE++RPQVHGHDINC+ +I  KGNHRFV GA+EKVA
Sbjct: 435 SHDQTTRIYAPWKVEAPLQDGEFWHEISRPQVHGHDINCMAVIHSKGNHRFVCGAEEKVA 494

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYV 350
           RVFEAPLSFLKTL++AT Q+S   +D+  DVQILGANMSALGLSQKPIYV
Sbjct: 495 RVFEAPLSFLKTLSNATLQKSCSSDDIMGDVQILGANMSALGLSQKPIYV 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223945893|gb|ACN27030.1| unknown [Zea mays]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/351 (68%), Positives = 285/351 (81%), Gaps = 3/351 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLD+KIH+Y G + GKF++ACELKGH+DWIRSLDFSLPV   GE  ++ LVSSSQD+ 
Sbjct: 20  MGGLDHKIHIYCGDKAGKFIKACELKGHSDWIRSLDFSLPVMMDGERHNLFLVSSSQDRT 79

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+    +++ +    RKE I + SYIEGP+ VAGS+SYQVS+ESLL+GHEDWVYSV
Sbjct: 80  IRIWKMTSEAAASGSSLQLRKETIEMTSYIEGPLFVAGSTSYQVSLESLLVGHEDWVYSV 139

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
           +W+PP+    D     QP SILSASMDK MMIW+PEKTTG+W++ VTVGELSHSALGFYG
Sbjct: 140 EWQPPTLLTGD--EAHQPMSILSASMDKMMMIWRPEKTTGLWIDSVTVGELSHSALGFYG 197

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           G W PDGRSILAHGYGG+FH+WR+VG+D +NWQPQ VPSGHFA V D++W+RS  YLLSV
Sbjct: 198 GLWQPDGRSILAHGYGGSFHMWRDVGLDSENWQPQIVPSGHFAPVSDLTWARSGQYLLSV 257

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR+FAPW+N  +      W E+ARPQ+HGHD+NCVT IQG GNHRFVSGADEKV+
Sbjct: 258 SHDQTTRIFAPWRNQVNPGDMIYWREIARPQIHGHDLNCVTFIQGSGNHRFVSGADEKVS 317

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           RVFEAPLSFLKTL  AT  +    ED   +VQ+LGANMSALGLSQKPIY +
Sbjct: 318 RVFEAPLSFLKTLQQATLLKPDISEDFD-NVQVLGANMSALGLSQKPIYTH 367

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869245|tpg|DAA47802.1| TPA: harpin-induced protein, mRNA [Zea mays]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/351 (68%), Positives = 285/351 (81%), Gaps = 3/351 (0%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV 60
           MGGLD+KIH+Y G + GKF++ACELKGH+DWIRSLDFSLPV   GE  ++ LVSSSQD+ 
Sbjct: 79  MGGLDHKIHIYCGDKAGKFIKACELKGHSDWIRSLDFSLPVMMDGERHNLFLVSSSQDRT 138

Query: 61  IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSV 120
           IRIWK+    +++ +    RKE I + SYIEGP+ VAGS+SYQVS+ESLL+GHEDWVYSV
Sbjct: 139 IRIWKMTSEAAASGSSLQLRKETIEMTSYIEGPLFVAGSTSYQVSLESLLVGHEDWVYSV 198

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG 180
           +W+PP+    D     QP SILSASMDK MMIW+PEKTTG+W++ VTVGELSHSALGFYG
Sbjct: 199 EWQPPTLLTGD--EAHQPMSILSASMDKMMMIWRPEKTTGLWIDSVTVGELSHSALGFYG 256

Query: 181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV 240
           G W PDGRSILAHGYGG+FH+WR+VG+D +NWQPQ VPSGHFA V D++W+RS  YLLSV
Sbjct: 257 GLWQPDGRSILAHGYGGSFHMWRDVGLDSENWQPQIVPSGHFAPVSDLTWARSGQYLLSV 316

Query: 241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
           SHDQTTR+FAPW+N  +      W E+ARPQ+HGHD+NCVT IQG GNHRFVSGADEKV+
Sbjct: 317 SHDQTTRIFAPWRNQVNPGDMIYWREIARPQIHGHDLNCVTFIQGSGNHRFVSGADEKVS 376

Query: 301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           RVFEAPLSFLKTL  AT  +    ED   +VQ+LGANMSALGLSQKPIY +
Sbjct: 377 RVFEAPLSFLKTLQQATLLKPDISEDFD-NVQVLGANMSALGLSQKPIYTH 426

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852630|ref|XP_002894196.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata] gi|297340038|gb|EFH70455.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/357 (71%), Positives = 296/357 (82%), Gaps = 11/357 (3%)

Query: 1   MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGE-AISILLVSSSQDK 59
           +GGLDNKI LY G+RTGKF   CELKGHTDWIRSLDFSLP+ ++ E A SI+LVSSSQDK
Sbjct: 194 LGGLDNKIKLYCGERTGKFTSVCELKGHTDWIRSLDFSLPLHSTEETANSIMLVSSSQDK 253

Query: 60  VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYS 119
           VIRIWKL L G       ++R+E I+LASYIEGPV V+G+ +YQ+SVES+LIGHEDWVYS
Sbjct: 254 VIRIWKLVLVGDVG----SWRRE-ITLASYIEGPVFVSGTFTYQISVESVLIGHEDWVYS 308

Query: 120 VQWEPPSTAPSDGVSC-QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178
           V+W+PP     DG+    QP SILSASMDKTMMIW+PEK TG+W+NVV VGELSH ALGF
Sbjct: 309 VEWQPPVIDSIDGLLVNHQPLSILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCALGF 368

Query: 179 YGGHWSPDGRSILAHGYGGAFHLWRNVGV--DIDNWQPQKVPSGHFAAVMDISWSRSSDY 236
           YGGHWS +G+SILAHGYGG+FHLWRNV    + +NWQ QKVPSGHFAAV D++W+R+ +Y
Sbjct: 369 YGGHWSHNGQSILAHGYGGSFHLWRNVSSSEESENWQMQKVPSGHFAAVTDVTWARTGEY 428

Query: 237 LLSVSHDQTTRVFAPWKNVASLMGENS-WHEVARPQVHGHDINCVTIIQGKGNHRFVSGA 295
           LLSVSHDQTTRVF+ WKN      E+  WHE+ARPQVHGHDINCV ++QGKGNHRFVSGA
Sbjct: 429 LLSVSHDQTTRVFSSWKNDEGNEAEDEHWHELARPQVHGHDINCVAMVQGKGNHRFVSGA 488

Query: 296 DEKVARVFEAPLSFLKTLNHATF-QESSFHEDLQADVQILGANMSALGLSQKPIYVN 351
           +EKV RVFEAPLSFLKTLNH     E SF EDLQADVQ+LGANMSALGLSQKPIY++
Sbjct: 489 EEKVVRVFEAPLSFLKTLNHTCAGGEGSFPEDLQADVQVLGANMSALGLSQKPIYLH 545

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
UNIPROTKB|F1NMC6	822	ELP2 "Uncharacterized protein"	0.931	0.397	0.426	2.6e-70
ZFIN|ZDB-GENE-060503-525	821	elp2 "elongation protein 2 hom	0.920	0.393	0.418	3.5e-68
UNIPROTKB|I3L616	826	ELP2 "Uncharacterized protein"	0.940	0.399	0.399	1.4e-64
UNIPROTKB|Q6IA86	826	ELP2 "Elongator complex protei	0.937	0.398	0.398	2.3e-64
UNIPROTKB|E1BEP7	827	ELP2 "Uncharacterized protein"	0.931	0.395	0.400	3.7e-64
UNIPROTKB|Q5EBD9	824	elp2 "Elongator complex protei	0.937	0.399	0.396	7.6e-64
MGI|MGI:1889642	831	Elp2 "elongator acetyltransfer	0.934	0.394	0.404	1.2e-63
RGD|1306419	821	Elp2 "elongator acetyltransfer	0.920	0.393	0.392	4.8e-62
FB|FBgn0033540	794	Elp2 "Elongator complex protei	0.894	0.395	0.387	1e-59
DICTYBASE|DDB_G0275651	901	elp2 "elongation protein 2" [D	0.928	0.361	0.383	3.1e-57

UNIPROTKB|F1NMC6 ELP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 149/349 (42%), Positives = 215/349 (61%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             GG D KI+L+  Q+ G+F +   L GH DWIR ++++  +C  G+   + L S +QD +I
Sbjct:   178 GGDDCKINLFI-QQNGQFQKTLTLPGHEDWIRGVEWA--IC--GD--DLFLASCAQDCLI 230

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             RIWK+  +       S    + I L   I    +    ++Y +++ES+L GHE+WVY+V 
Sbjct:   231 RIWKVCTKSKQF---SEIEDDSIRLKENIF--TVKDTDTTYAITLESVLAGHENWVYAVH 285

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+P     S G S QQP  ILSASMDKT++IW+P+K +G+W+  V VGE+  + LGF+  
Sbjct:   286 WQPSF---SKGGSMQQPMRILSASMDKTVIIWEPDKESGVWLEQVRVGEVGGNTLGFFDC 342

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
              +SPDG  I+AH + GAFHLW+   V    W P+ V SGHF +V D+ W    ++++SV 
Sbjct:   343 QFSPDGSMIIAHAFHGAFHLWKQASVSKKEWTPEVVISGHFNSVEDVQWDPEGEFIISVG 402

Query:   242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
              DQTTR+FAPWK       E +WHE+ARPQVHG+D+ C+ +I   G  +FVSGADEKV R
Sbjct:   403 SDQTTRLFAPWKRKDET--EVTWHEIARPQVHGYDMRCLAMI---GRFQFVSGADEKVLR 457

Query:   302 VFEAPLSFLKTLNHAT-FQESSFHEDLQADVQILGANMSALGLSQKPIY 349
             VF AP +F++  ++ T          L +D+   GA + ALGLS K ++
Sbjct:   458 VFCAPKNFIENFSNITGIPMEKLCSRLSSDLPE-GATVPALGLSNKAVF 505

GO:0005737 "cytoplasm" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

ZFIN|ZDB-GENE-060503-525 elp2 "elongation protein 2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 147/351 (41%), Positives = 217/351 (61%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             GG D+++HLY  Q +G+F R   L GH DW+R ++++      GE   + L S SQD +I
Sbjct:   174 GGDDSRVHLYV-QLSGQFQRVLTLTGHEDWVRGVEWANK---DGE---LWLASCSQDCLI 226

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             R+W+L  + ++     T    +I +   I     V+G   + V++E++L GHE+WVY + 
Sbjct:   227 RVWRLFAKTAAEPDLQT--DGIIKMKENI---FQVSGEE-FAVTLETVLAGHENWVYGIH 280

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+PPS     G S +Q   +LSASMDKTM++W PE+ +G+W+ +V VGE+  + LGFYG 
Sbjct:   281 WQPPSVK---GDSVEQSLKLLSASMDKTMILWGPEEDSGMWVEMVRVGEVGGNTLGFYGC 337

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
               SPDG  ILAH + GA HLW +       W+P  V SGHF AV D+SW    +++++V 
Sbjct:   338 QMSPDGSMILAHAFHGALHLWHHDSNQ--EWRPSVVISGHFNAVQDMSWDPEGEFIITVG 395

Query:   242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
              DQTTR+F PW    S   + +WHE++RPQ+HG+D+ C+T++   G  +FVSGADEKV R
Sbjct:   396 SDQTTRLFTPWTRKGS--SQITWHEISRPQIHGYDMQCLTMV---GRFQFVSGADEKVLR 450

Query:   302 VFEAPLSFLKTLNHATFQESSFHEDLQA-DVQIL--GANMSALGLSQKPIY 349
             VF+AP +F++  N A    +S  + L   D+  L  GA+  ALGLS K ++
Sbjct:   451 VFKAPRNFVE--NFAHISGTSLEKLLGCNDIADLPEGASTPALGLSNKAVF 499

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|I3L616 ELP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 139/348 (39%), Positives = 204/348 (58%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             G  D KIHL+  Q+  +F     L GH DWIR ++++      G    + L + SQD +I
Sbjct:   181 GDDDCKIHLFV-QQNDQFQNVLFLSGHEDWIRGVEWA----AFGR--DLFLATCSQDCLI 233

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             RIWKL ++  S  TQ      +      IE     +   ++ V++E++L GHE+WV +V 
Sbjct:   234 RIWKLYIKSVSFETQEDDHIRLKENTFAIENE---SNKIAFAVTLETVLAGHENWVNAVH 290

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+PP     DGV  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFY  
Sbjct:   291 WQPPFY--KDGV-LQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDC 347

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
              ++ DG  I+AH + GA HLW+    ++  W P+ V SGHF  V D++W    +++++V 
Sbjct:   348 QFNEDGSMIIAHAFHGALHLWKQNATNLREWVPEIVISGHFDGVQDLTWDPEGEFIITVG 407

Query:   242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
              DQTTR+FAPWK       + +WHE+ARPQ+HG+D+ C+ +I      +FVSGADEKV R
Sbjct:   408 TDQTTRLFAPWKRKDQ--SQVTWHEIARPQIHGYDLKCLAMIS---RFQFVSGADEKVLR 462

Query:   302 VFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
             VF AP +F++     T Q  +     Q      GA + ALGLS K ++
Sbjct:   463 VFSAPRNFVENFCIITGQSLNHVLGNQEGDLPEGATVPALGLSNKAVF 510

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6IA86 ELP2 "Elongator complex protein 2" [Homo sapiens (taxid:9606)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 139/349 (39%), Positives = 206/349 (59%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             G  D +IH++  Q+  +F +   L GH DWIR ++++      G    + L S SQD +I
Sbjct:   181 GNDDCRIHIF-AQQNDQFQKVLSLCGHEDWIRGVEWA----AFGR--DLFLASCSQDCLI 233

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             RIWKL ++ +S  TQ      +      IE   +     ++ V++E++L GHE+WV +V 
Sbjct:   234 RIWKLYIKSTSLETQDDDNIRLKENTFTIENESV---KIAFAVTLETVLAGHENWVNAVH 290

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+P      DGV  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFY  
Sbjct:   291 WQP--VFYKDGV-LQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDC 347

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
              ++ DG  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++V 
Sbjct:   348 QFNEDGSMIIAHAFHGALHLWKQNTVNPREWTPEIVISGHFDGVQDLVWDPEGEFIITVG 407

Query:   242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
              DQTTR+FAPWK       + +WHE+ARPQ+HG+D+ C+ +I      +FVSGADEKV R
Sbjct:   408 TDQTTRLFAPWKRKDQ--SQVTWHEIARPQIHGYDLKCLAMIN---RFQFVSGADEKVLR 462

Query:   302 VFEAPLSFLKTLNHATFQESSFHEDLQADVQIL-GANMSALGLSQKPIY 349
             VF AP +F++     T Q  + H     D  +  GA + ALGLS K ++
Sbjct:   463 VFSAPRNFVENFCAITGQSLN-HVLCNQDSDLPEGATVPALGLSNKAVF 510

GO:0033588 "Elongator holoenzyme complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IC

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IC

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IC

UNIPROTKB|E1BEP7 ELP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 141/352 (40%), Positives = 209/352 (59%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             G  D KIHL+  Q+  +F +   L GH DWIR ++++      G    + L S SQD +I
Sbjct:   181 GDDDCKIHLFV-QQNNQFQKMLFLSGHEDWIRGVEWA----AFGR--DLFLASCSQDCLI 233

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS---SYQVSVESLLIGHEDWVY 118
             RIW+L ++ +S  TQ     + I L    E    V   S   ++ V++E++L GHE+WV 
Sbjct:   234 RIWRLYVKSTSLETQED--DDNIKLK---ENTFNVENESIKITFAVTLETVLAGHENWVN 288

Query:   119 SVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF 178
             +V W+P  +   DG+  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGF
Sbjct:   289 AVHWQP--SFYKDGI-LQQPMRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGF 345

Query:   179 YGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL 238
             Y   ++ DG  I+AH + GA HLW+    +   W P+ V SGHF  V D++W    ++++
Sbjct:   346 YDCQFNEDGSMIIAHAFHGALHLWKQNATNPKEWTPEIVISGHFDGVQDLTWDPEGEFII 405

Query:   239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK 298
             +V  DQTTR+FAPWK       + +WHE+ARPQ+HG+D+ C+ +I      +FVSGADEK
Sbjct:   406 TVGTDQTTRLFAPWKRKDQ--SQVTWHEIARPQIHGYDLKCLAMIS---RFQFVSGADEK 460

Query:   299 VARVFEAPLSFLKTLNHATFQESSFHEDLQADVQIL-GANMSALGLSQKPIY 349
             V RVF AP +F++     T Q  + H     D  +  GA + ALGLS K ++
Sbjct:   461 VLRVFSAPRNFVENFCAITGQSMN-HVLCDQDGDLPEGATVPALGLSNKAVF 511

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5EBD9 elp2 "Elongator complex protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 139/351 (39%), Positives = 212/351 (60%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             G  D++IHLY  Q   +F +   L GH DWIR +++++    +G+  ++ L S +QD +I
Sbjct:   176 GADDSRIHLYVLQNE-QFEKTQVLHGHEDWIRGVEWAV----TGQ--NLFLASCAQDCLI 228

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             RIWK+  + +  N++ T  +  I L   I         +SY V++E++L GHE+ +Y+V 
Sbjct:   229 RIWKIFRKTAKENSK-TEDENSIKLKENIFKVKEKDTETSYAVTLETVLTGHENSIYAVH 287

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+P  +   DG S  QP S+LSASMDKTM++W+P++ +G+W+  V VGE+  + LGF G 
Sbjct:   288 WQPSFSR--DG-SIVQPMSLLSASMDKTMILWEPDEESGVWLEQVRVGEVGGNTLGFLGC 344

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
              +SPD   ILAH + GA HLW       + W P  + SGHF +V D+ W     ++++VS
Sbjct:   345 QFSPDKSMILAHAFHGALHLWSRAPNKQNEWIPMVIISGHFDSVQDMRWDPDGQFVITVS 404

Query:   242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR 301
              DQTTR+F PWK         +WHE+ARPQ+HG+D+ C+ +I   G  +FVSGADEKV R
Sbjct:   405 ADQTTRLFGPWKKKGQ--SHVTWHEIARPQIHGYDMQCLAMI---GRFQFVSGADEKVLR 459

Query:   302 VFEAPLSFLKTLNHAT---FQESSFHEDLQADVQILGANMSALGLSQKPIY 349
             VF AP +F++  ++ +    ++   +ED        GA + ALGLS K ++
Sbjct:   460 VFAAPRNFIENFSNISCISVEKLLLNEDTNLPE---GATVPALGLSNKAVF 507

GO:0000502 "proteasome complex" evidence=ISS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

MGI|MGI:1889642 Elp2 "elongator acetyltransferase complex subunit 2" [Mus musculus (taxid:10090)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 142/351 (40%), Positives = 213/351 (60%)

Query:     2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
             G  D +IHLY  Q+  +F +A  L GH DWIR ++++    T G    + L S SQD +I
Sbjct:   181 GDDDCRIHLYI-QQDDQFQKALSLCGHEDWIRGVEWA----TFGR--DLFLASCSQDCLI 233

Query:    62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
             RIW+L ++ +S  T+    +   +  +  +G V     ++  V++E++L GHE+WV +V 
Sbjct:   234 RIWRLYMKPASFETKDGSLRLKENTFTIKDGGV----RTTVAVTLETVLAGHENWVNAVH 289

Query:   122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
             W+P  +   DGV  QQP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFY  
Sbjct:   290 WQP--SFYKDGV-LQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDC 346

Query:   182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
              +  +G  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++ S
Sbjct:   347 QFGENGTMIIAHAFHGALHLWKQSTVNPRQWAPEIVISGHFDGVQDLMWDPEGEFIITTS 406

Query:   242 HDQTTRVFAPWKNVASL-MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA 300
              DQTTR+FAPWK        + +WHE+ARPQ+HG++I C+ +I      +FVSGADEKV 
Sbjct:   407 TDQTTRLFAPWKKKDQKDRSQVTWHEIARPQIHGYNIKCLAMID---RFQFVSGADEKVL 463

Query:   301 RVFEAPLSFLKTLNHATFQESSFHEDLQADVQIL--GANMSALGLSQKPIY 349
             RVF AP +F++  +  + Q  S H  +  D Q L  GA + ALGLS K ++
Sbjct:   464 RVFSAPRNFVENFSVISRQSLS-H--MLCDDQDLPEGATVPALGLSNKALF 511

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IDA

GO:0033588 "Elongator holoenzyme complex" evidence=ISO

GO:0046425 "regulation of JAK-STAT cascade" evidence=IDA

RGD|1306419 Elp2 "elongator acetyltransferase complex subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 135/344 (39%), Positives = 207/344 (60%)

Query:     7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL 66
             +IHL+  Q+   F +   L GH DWIR ++++    T G    + L S SQD +IRIW+L
Sbjct:   186 RIHLFV-QQDDWFQKMLSLCGHEDWIRGVEWA----TFGR--DLFLASCSQDCLIRIWRL 238

Query:    67 ALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS 126
              ++ +S  T+    +   +  +  +G V    S++  V +E++L GHE+WV ++ W+P  
Sbjct:   239 YMKPTSLETEDGSIRLKENTFTIKDGGV----STTVAVILETVLAGHENWVNAIHWQP-- 292

Query:   127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
             +   DGV   QP  +LSASMDKTM++W P++ +G+W+  V VGE+  + LGFYG  +  +
Sbjct:   293 SFYKDGV-LHQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYGCQFGEN 351

Query:   187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT 246
             G  I+AH + GA HLW+   V+   W P+ V SGHF  V D+ W    +++++ S DQTT
Sbjct:   352 GSMIIAHAFHGAMHLWKQSTVNPRQWAPEIVISGHFDGVQDLIWDPEGEFIITTSTDQTT 411

Query:   247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
             R+FAPWK       + +WHE+ARPQ+HG+++ C+ +I      +FVSGADEKV RVF AP
Sbjct:   412 RLFAPWKK--KNQSQVTWHEIARPQIHGYNLKCLAMID---RFQFVSGADEKVLRVFSAP 466

Query:   307 LSFLKTLNHATFQESSFHEDLQADVQIL-GANMSALGLSQKPIY 349
              +F++  +  + Q  S H     D  +  GA + ALGLS K ++
Sbjct:   467 RNFVENFSVISRQSLS-HMLYDEDNDLPEGATVPALGLSNKAVF 509

GO:0000502 "proteasome complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISO

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0033588 "Elongator holoenzyme complex" evidence=ISO;ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0046425 "regulation of JAK-STAT cascade" evidence=IEA;ISO

GO:0061133 "endopeptidase activator activity" evidence=ISS

GO:0003677 "DNA binding" evidence=ISO

FB|FBgn0033540 Elp2 "Elongator complex protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 133/343 (38%), Positives = 193/343 (56%)

Query:    13 GQRTGK-FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS 71
             G   G+ F R  +L GH DW+R LDF +     GE   +LL S SQD  IR+W++A R  
Sbjct:   188 GDSLGRQFQRKHKLTGHEDWVRGLDFVV----DGE--DLLLASGSQDNFIRLWRIAPRSK 241

Query:    72 SANTQSTYRKEVISLAS---YIEGPVLVAGSSS-YQVSVESLLIGHEDWVYSVQWEPPST 127
                 ++      +S       +E  +L  G  + Y VS+ES+L GHE W+Y V W     
Sbjct:   242 EQMQENRVDLHQLSHNDDEIKVEEKILQLGKEAWYAVSLESVLYGHEGWIYGVHWHK--- 298

Query:   128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG 187
              P       Q   +LSAS+DKT++IW P +  GIW+  V VGE+  +++GFYGG +S DG
Sbjct:   299 TPD------QELRLLSASIDKTVIIWAPTEE-GIWLEEVRVGEVGGNSVGFYGGKFSGDG 351

Query:   188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTR 247
              SI+AH Y G FH+W         W P  +  GH+  V D++W  S  YL++ S DQTTR
Sbjct:   352 HSIMAHSYQGGFHIWSQDPDRPQLWTPGVIVGGHYGEVRDLAWEHSGAYLMTASADQTTR 411

Query:   248 VFAPWKNVASLMGEN-SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
             + APW       G N +WHE+ARPQ+HG+D+  + ++     ++F SGA+EK+ R F+AP
Sbjct:   412 LHAPWLQD----GANPTWHELARPQIHGYDMQALALLS---RYKFASGAEEKIVRTFQAP 464

Query:   307 LSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKPIY 349
              +F++   H +  E+    D+  D    GA++ +LGLS K +Y
Sbjct:   465 ANFIENFRHISGIENDDAGDVLLDSLPKGASVPSLGLSNKAVY 507

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0043248 "proteasome assembly" evidence=ISS

GO:0061133 "endopeptidase activator activity" evidence=ISS

DICTYBASE|DDB_G0275651 elp2 "elongation protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 593 (213.8 bits), Expect = 3.1e-57, P = 3.1e-57
 Identities = 139/362 (38%), Positives = 201/362 (55%)

Query:    16 TGKFVRACELKGHTDWIRSLDFSL--PVCTSGEAISILLVSSSQDKVIRIWKLAL----- 68
             T +F +   L+GH DWIRSL F         GE   ++L SSSQD  IR+WK++      
Sbjct:   214 TLQFKKLMSLQGHQDWIRSLSFKTINEGEGEGEEEELILASSSQDFKIRLWKISKFTAEK 273

Query:    69 --------RGSS-AN---TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDW 116
                      G+  AN   + ST    V SL++  +G +    S  Y + ++++L GH+DW
Sbjct:   274 QKQQQLDESGNGGANLLGSLSTQLSGVTSLST--KGYLFNCNSVKYIILLDAVLSGHDDW 331

Query:   117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL 176
             VYS+ W P       G   Q+   ++SASMDKT ++W+P++TTGIW++   VG++  + L
Sbjct:   332 VYSIHWSPARRDQETGKKIQE-QMLISASMDKTAIVWRPDRTTGIWIDESRVGDMGGNIL 390

Query:   177 GFYGGHWSPDGRSILAHGYGGAFHLWR-NVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD 235
             G YG  +SP  + IL+HGY GAFH W+ N       W+PQ V SGHF  V D+ WS    
Sbjct:   391 GQYGAVFSPCSQYILSHGYNGAFHFWKQNTNQKSSFWEPQIVVSGHFGPVQDLMWSPDYS 450

Query:   236 YLLSVSHDQTTRVFAPWK--NVASLMGEN------SWHEVARPQVHGHDINCVTIIQGKG 287
             Y +S S D+T R+F+ WK  N  + +  N      SW+E+ARPQ+HG+D+ C T I  K 
Sbjct:   451 YFISCSTDRTLRLFSEWKRNNNNNNLENNKEQQIISWNEIARPQIHGYDLECFTFINKK- 509

Query:   288 NHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMSALGLSQKP 347
              H  VSGA+EK+ R F    +F+ TL + + +    ++  Q     L AN  +LGLS KP
Sbjct:   510 THVIVSGAEEKIMRAFVGSQNFVDTLLNIS-KVQPVNDGTQRP---LAANQPSLGLSNKP 565

Query:   348 IY 349
              +
Sbjct:   566 YF 567

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I1S7	ELP2_ARATH	No assigned EC number	0.7170	0.9857	0.4128	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 60/249 (24%), Positives = 89/249 (35%), Gaps = 70/249 (28%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
              D  I ++    TGK +    L+GHTDW+ S+ FS             + SSSQD  I
Sbjct: 111 SSRDKTIKVWDV-ETGKCLTT--LRGHTDWVNSVAFSPD--------GTFVASSSQDGTI 159

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ 121
           ++W          T                                  L GH   V SV 
Sbjct: 160 KLW-------DLRTGKCVA----------------------------TLTGHTGEVNSVA 184

Query: 122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG 181
           + P      DG        +LS+S D T+ +W    +TG  +  +      H   G    
Sbjct: 185 FSP------DG------EKLLSSSSDGTIKLWDL--STGKCLGTLR----GHEN-GVNSV 225

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
            +SPDG  + +    G   +W     D+   +  +  SGH  +V  ++WS     L S S
Sbjct: 226 AFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Query: 242 HDQTTRVFA 250
            D T R++ 
Sbjct: 281 ADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 50/284 (17%), Positives = 86/284 (30%), Gaps = 83/284 (29%)

Query: 23  CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE 82
             LKGHT  +  + FS            LL + S D  I++W L                
Sbjct: 3   RTLKGHTGGVTCVAFS--------PDGKLLATGSGDGTIKVWDLE--------------- 39

Query: 83  VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL 142
                                  +   L GH   V  V                  + + 
Sbjct: 40  --------------------TGELLRTLKGHTGPVRDVAA------------SADGTYLA 67

Query: 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
           S S DKT+ +W              V  L+          +SPDGR + +        +W
Sbjct: 68  SGSSDKTIRLW-------DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 203 RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF--APWKNVASLMG 260
                D++  +      GH   V  +++S    ++ S S D T +++     K VA+L G
Sbjct: 121 -----DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE 304
                           +N V         + +S + +   ++++
Sbjct: 176 HTGE------------VNSVAFS--PDGEKLLSSSSDGTIKLWD 205

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.7 bits (169), Expect = 4e-13
 Identities = 72/316 (22%), Positives = 116/316 (36%), Gaps = 46/316 (14%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D  I L+      K +++ E   H   +  L  S P     +  SILL SSS D  +
Sbjct: 83  GSSDGTIKLWDLDNGEKLIKSLEGL-HDSSVSKLALSSP-----DGNSILLASSSLDGTV 136

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY---------QVSVESLLIG 112
           ++W L+  G    T   + + V SLA   +G +L +GSS                S L G
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196

Query: 113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS 172
           H D V S+ + P                I S S D T+ +W     TG  +     G   
Sbjct: 197 HTDPVSSLAFSP-----------DGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSD 243

Query: 173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR 232
                F     SPDG  + +    G   LW        +    +  SGH ++V+ +++S 
Sbjct: 244 SVVSSF-----SPDGSLLASGSSDGTIRLWDLR----SSSSLLRTLSGHSSSVLSVAFSP 294

Query: 233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV 292
               L S S D T R++         +           + H   ++ ++     G+    
Sbjct: 295 DGKLLASGSSDGTVRLW--------DLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVS 345

Query: 293 SGADEKVARVFEAPLS 308
            G+D+   R+++    
Sbjct: 346 GGSDDGTIRLWDLRTG 361

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 61/299 (20%), Positives = 103/299 (34%), Gaps = 56/299 (18%)

Query: 19  FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL-ALRGSSANTQS 77
            + +  L+GH D I S+ FS      GE    LL+S S D  I++W L        + + 
Sbjct: 55  DLSSLLLRGHEDSITSIAFS----PDGE----LLLSGSSDGTIKLWDLDNGEKLIKSLEG 106

Query: 78  TYRKEVISLA-SYIEGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPP 125
            +   V  LA S  +G  ++  SSS   +V+             L GH + V S+ +   
Sbjct: 107 LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF--- 163

Query: 126 STAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP 185
                   S         +S+D T+ +W       +         L+          +SP
Sbjct: 164 --------SPDGKLLASGSSLDGTIKLWDLRTGKPLST-------LAGHTDPVSSLAFSP 208

Query: 186 DGRSILA-HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ 244
           DG  ++A     G   LW     D+   +  +      +  +  S+S     L S S D 
Sbjct: 209 DGGLLIASGSSDGTIRLW-----DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303
           T R++            +S   +     H   +  V            SG+ +   R++
Sbjct: 264 TIRLWDL---------RSSSSLLRTLSGHSSSVLSVAFSPDGKL--LASGSSDGTVRLW 311

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 49/261 (18%), Positives = 84/261 (32%), Gaps = 35/261 (13%)

Query: 71  SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPS 130
             +    +      S +  +   +L     S       LL GHED + S+ + P      
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDG---- 77

Query: 131 DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI 190
                     +LS S D T+ +W  +    +  ++  + + S S L       SPDG SI
Sbjct: 78  --------ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL----SSPDGNSI 125

Query: 191 LAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
           L       G   LW          +  +   GH  +V  +++S     L S S       
Sbjct: 126 LLASSSLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------ 175

Query: 249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS 308
                    L    +   ++    H   ++ +      G     SG+ +   R+++    
Sbjct: 176 ---LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTG 231

Query: 309 FLKTL---NHATFQESSFHED 326
            L       H+    SSF  D
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPD 252

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 45/267 (16%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D  I L+    TGK +R+  L GH+D          V +S      LL S S D  I
Sbjct: 217 GSSDGTIRLWDL-STGKLLRST-LSGHSDS---------VVSSFSPDGSLLASGSSDGTI 265

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS----------SYQVSVESLLI 111
           R+W L    S   T S +   V+S+A   +G +L +GSS          + ++     L 
Sbjct: 266 RLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325

Query: 112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL 171
           GHE  V S+ + P                +   S D T+ +W       +          
Sbjct: 326 GHEGPVSSLSFSP-----------DGSLLVSGGSDDGTIRLWDLRTGKPLKTL------- 367

Query: 172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS 231
                      +SPDGR + +    G   LW     D+      +   GH + V  + +S
Sbjct: 368 -EGHSNVLSVSFSPDGRVVSSGSTDGTVRLW-----DLSTGSLLRNLDGHTSRVTSLDFS 421

Query: 232 RSSDYLLSVSHDQTTRVFAPWKNVASL 258
                L S S D T R++    ++ S+
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 19/126 (15%)

Query: 182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS 241
            +SPDG+ +      G   +W     D++  +  +   GH   V D++ S    YL S S
Sbjct: 16  AFSPDGKLLATGSGDGTIKVW-----DLETGELLRTLKGHTGPVRDVAASADGTYLASGS 70

Query: 242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVA 300
            D+T R++        L        +     H   ++ V       + R +S +  +K  
Sbjct: 71  SDKTIRLW-------DLETGECVRTLT---GHTSYVSSVAFSP---DGRILSSSSRDKTI 117

Query: 301 RVFEAP 306
           +V++  
Sbjct: 118 KVWDVE 123

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
            +  +   GH   V  +++S   + L S S D T RV+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 8/42 (19%)

Query: 24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK 65
           LKGHT  + S+ FS            LL S S D  +R+W 
Sbjct: 6  TLKGHTGPVTSVAFS--------PDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PTZ00421	493	coronin; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.68
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.62
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG1334	559	consensus WD40 repeat protein [General function pr	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.58
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.5
KOG4547	541	consensus WD40 repeat-containing protein [General	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
KOG2139	445	consensus WD40 repeat protein [General function pr	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.35
PRK04922	433	tolB translocation protein TolB; Provisional	99.34
PRK05137	435	tolB translocation protein TolB; Provisional	99.34
PRK03629	429	tolB translocation protein TolB; Provisional	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK00178	430	tolB translocation protein TolB; Provisional	99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.28
KOG2321	703	consensus WD40 repeat protein [General function pr	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.2
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.19
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.18
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.17
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.1
KOG2314	698	consensus Translation initiation factor 3, subunit	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.07
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
PRK00178	430	tolB translocation protein TolB; Provisional	99.06
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.02
PRK01029	428	tolB translocation protein TolB; Provisional	98.98
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.96
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.95
COG4946	668	Uncharacterized protein related to the periplasmic	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.93
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.92
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.92
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
PRK04792	448	tolB translocation protein TolB; Provisional	98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.79
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.77
KOG2695	425	consensus WD40 repeat protein [General function pr	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.76
COG4946	668	Uncharacterized protein related to the periplasmic	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
PRK04043	419	tolB translocation protein TolB; Provisional	98.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.69
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.67
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.66
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.65
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.56
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.54
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.48
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.45
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.41
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.38
KOG3621	726	consensus WD40 repeat-containing protein [General	98.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.33
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.3
KOG2314	698	consensus Translation initiation factor 3, subunit	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.26
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.2
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.06
KOG3621	726	consensus WD40 repeat-containing protein [General	98.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.02
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.99
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.92
PHA02713	557	hypothetical protein; Provisional	97.89
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.75
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.69
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
PRK02888	635	nitrous-oxide reductase; Validated	97.65
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.64
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.57
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.54
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.51
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.48
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.46
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.45
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
PHA02713	557	hypothetical protein; Provisional	97.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.23
PRK13616	591	lipoprotein LpqB; Provisional	97.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.03
PHA03098	534	kelch-like protein; Provisional	97.0
KOG2444	238	consensus WD40 repeat protein [General function pr	97.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.99
KOG2395	644	consensus Protein involved in vacuole import and d	96.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.93
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.79
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.78
PRK02888	635	nitrous-oxide reductase; Validated	96.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.71
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.67
PRK13616	591	lipoprotein LpqB; Provisional	96.64
COG3391	381	Uncharacterized conserved protein [Function unknow	96.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.48
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.47
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.43
PHA03098	534	kelch-like protein; Provisional	96.4
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.29
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.28
PHA02790	480	Kelch-like protein; Provisional	96.28
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.28
KOG2444	238	consensus WD40 repeat protein [General function pr	96.24
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.22
KOG2395	644	consensus Protein involved in vacuole import and d	96.19
PHA02790	480	Kelch-like protein; Provisional	96.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.97
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.94
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.93
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.91
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.84
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.83
COG3391	381	Uncharacterized conserved protein [Function unknow	95.4
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.33
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.3
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.12
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.0
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.95
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.72
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.52
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.27
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.77
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.48
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.46
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.46
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.17
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.05
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	92.75
COG4590	733	ABC-type uncharacterized transport system, permeas	92.68
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.61
PLN02193	470	nitrile-specifier protein	92.6
PRK13684	334	Ycf48-like protein; Provisional	92.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.47
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.24
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.07
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.77
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.65
PLN02153	341	epithiospecifier protein	91.26
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.21
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.99
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.82
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.76
PRK13684	334	Ycf48-like protein; Provisional	90.65
PLN02153	341	epithiospecifier protein	90.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.33
COG5167	776	VID27 Protein involved in vacuole import and degra	90.2
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.15
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.08
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.88
KOG2247	615	consensus WD40 repeat-containing protein [General	89.72
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.6
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.32
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.94
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.66
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.64
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.51
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.35
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.35
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.16
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.95
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	87.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.76
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.55
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.44
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.18
PLN02193	470	nitrile-specifier protein	86.65
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.07
KOG2377	657	consensus Uncharacterized conserved protein [Funct	85.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.71
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.51
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.19
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.75
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.3
PF13449	326	Phytase-like: Esterase-like activity of phytase	83.87
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	83.67
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.36
COG5167	776	VID27 Protein involved in vacuole import and degra	82.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.57
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.63

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-45  Score=292.84  Aligned_cols=274  Identities=22%  Similarity=0.287  Sum_probs=243.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|.++|+||..+ .  .+.++.++|...|.|++|+        |+++.||+|+.||+|++||..++++.......+.
T Consensus       132 tGsGD~TvR~WD~~T-e--Tp~~t~KgH~~WVlcvaws--------PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~  200 (480)
T KOG0271|consen  132 TGSGDTTVRLWDLDT-E--TPLFTCKGHKNWVLCVAWS--------PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK  200 (480)
T ss_pred             ecCCCceEEeeccCC-C--CcceeecCCccEEEEEEEC--------CCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence            689999999999998 5  5788999999999999999        8999999999999999999999999988888899


Q ss_pred             cceeeeEeee-----cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           81 KEVISLASYI-----EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        81 ~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ..+.+++|.|     ..+.+++++.++.+++|.        .+.+|+.+|+|+.|-      .++ +      +.+|+.|
T Consensus       201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG------G~g-l------iySgS~D  267 (480)
T KOG0271|consen  201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG------GEG-L------IYSGSQD  267 (480)
T ss_pred             cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc------CCc-e------EEecCCC
Confidence            9999999976     567899999999998775        467999999999998      333 4      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-----------CCCC-------------------------EEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-----------PDGR-------------------------SIL  191 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~  191 (351)
                      ++|++|+...  |.+.+.++     +|...|..++++           |.++                         .|+
T Consensus       268 rtIkvw~a~d--G~~~r~lk-----GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV  340 (480)
T KOG0271|consen  268 RTIKVWRALD--GKLCRELK-----GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV  340 (480)
T ss_pred             ceEEEEEccc--hhHHHhhc-----ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence            9999999998  88777776     888888888766           3333                         499


Q ss_pred             EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      +|+.|.++.+|+....+    +++..+.+|...|+.+.||||++++|+++-|+.|++||.++++          .+..++
T Consensus       341 SgsDd~tlflW~p~~~k----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk----------~lasfR  406 (480)
T KOG0271|consen  341 SGSDDFTLFLWNPFKSK----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK----------FLASFR  406 (480)
T ss_pred             EecCCceEEEecccccc----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc----------hhhhhh
Confidence            99999999999987664    6889999999999999999999999999999999999999998          888999


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccccc
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQES  321 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~  321 (351)
                      +|-..|+.++|+.  |.++|++|+.|.++++|++. .+..+-|.+|...-.
T Consensus       407 GHv~~VYqvawsa--DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf  455 (480)
T KOG0271|consen  407 GHVAAVYQVAWSA--DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF  455 (480)
T ss_pred             hccceeEEEEecc--CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE
Confidence            9999999999999  99999999999999999998 666677776665433

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.6e-45  Score=293.84  Aligned_cols=258  Identities=16%  Similarity=0.244  Sum_probs=234.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |||.+|.++||+... .  ..+.+|.||.+.|.++.|+    |.  .++..||||+.||++++|++.....+..+. ++.
T Consensus       192 T~swsG~~kvW~~~~-~--~~~~~l~gH~~~v~~~~fh----P~--~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~  261 (459)
T KOG0272|consen  192 TGSWSGLVKVWSVPQ-C--NLLQTLRGHTSRVGAAVFH----PV--DSDLNLATASADGTVKLWKLSQETPLQDLE-GHL  261 (459)
T ss_pred             EeecCCceeEeecCC-c--ceeEEEeccccceeeEEEc----cC--CCccceeeeccCCceeeeccCCCcchhhhh-cch
Confidence            689999999999988 5  6778999999999999999    32  246799999999999999999876665554 345


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+..++|+|+|++|.+++-+...++|..        ..||...|.+++|.      +||.+      ++||+.|..-+|
T Consensus       262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~------~DGSL------~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ------PDGSL------AATGGLDSLGRV  329 (459)
T ss_pred             hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec------CCCce------eeccCccchhhe
Confidence            78889999999999999999998888764        56899999999999      89999      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||+++  +.++..+.     +|..+|.+++|+|+|-.||+|+.|++++|||++..     ..++++.+|..-|+.|+|+|
T Consensus       330 WDlRt--gr~im~L~-----gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p  397 (459)
T KOG0272|consen  330 WDLRT--GRCIMFLA-----GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSP  397 (459)
T ss_pred             eeccc--CcEEEEec-----ccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecc
Confidence            99999  88887776     89999999999999999999999999999999987     56899999999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          233 -SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       233 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                       .|.+|+|++.|++++||..++..          ++..+.+|...|.++++++  ++++|++++.|.++++|.
T Consensus       398 ~~g~fL~TasyD~t~kiWs~~~~~----------~~ksLaGHe~kV~s~Dis~--d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  398 QEGYFLVTASYDNTVKIWSTRTWS----------PLKSLAGHEGKVISLDISP--DSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCeEEEEcccCcceeeecCCCcc----------cchhhcCCccceEEEEecc--CCceEEEeccCceeeecc
Confidence             78889999999999999975554          8999999999999999999  999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-41  Score=270.37  Aligned_cols=258  Identities=21%  Similarity=0.342  Sum_probs=227.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .+...+.||.++|.|++|+        |++..|+||+.|.++|+||+.+........ .+..-+.+++|+|||+.|++|.
T Consensus       106 rCssS~~GH~e~Vl~~~fs--------p~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~  176 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFS--------PTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS  176 (480)
T ss_pred             eeccccCCCCCcEEEEEec--------CCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc
Confidence            4556789999999999999        889999999999999999999877665443 4567899999999999999999


Q ss_pred             CceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511          100 SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus       100 ~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      .++.|.+|.         .+.+|...|++++|.|-+.. +..++      ||+++.||.|+|||+..  +.++..+.   
T Consensus       177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~-p~~r~------las~skDg~vrIWd~~~--~~~~~~ls---  244 (480)
T KOG0271|consen  177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV-PPCRR------LASSSKDGSVRIWDTKL--GTCVRTLS---  244 (480)
T ss_pred             cCCeEEEecCCCCCcccccccCcccceeEEeecccccC-CCccc------eecccCCCCEEEEEccC--ceEEEEec---
Confidence            999998886         48899999999999986643 55566      99999999999999998  77777766   


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee-----------cCCC----
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS-----------RSSD----  235 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----------p~~~----  235 (351)
                        +|+.+|+|++|-.+ .+|++++.|++|++|+...+     .+...+++|...|+.++++           |.++    
T Consensus       245 --gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG-----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  245 --GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG-----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             --cCccceEEEEEcCC-ceEEecCCCceEEEEEccch-----hHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence              99999999999544 58999999999999999887     6789999999999999877           2233    


Q ss_pred             ---------------------EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          236 ---------------------YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       236 ---------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                                           .|++|+.|.++.+|+....+         +++.+..+|..-|+.+.|+|  |+++||++
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------kpi~rmtgHq~lVn~V~fSP--d~r~IASa  385 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------KPITRMTGHQALVNHVSFSP--DGRYIASA  385 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---------cchhhhhchhhheeeEEECC--CccEEEEe
Confidence                                 49999999999999986555         47888889999999999999  99999999


Q ss_pred             cCCCeEEEEecC-chhhhceeecc
Q 048511          295 ADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       295 ~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +-|..|++|+-. |+++.+|.+|-
T Consensus       386 SFDkSVkLW~g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  386 SFDKSVKLWDGRTGKFLASFRGHV  409 (480)
T ss_pred             ecccceeeeeCCCcchhhhhhhcc
Confidence            999999999976 99999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7e-39  Score=242.93  Aligned_cols=276  Identities=15%  Similarity=0.225  Sum_probs=235.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~   79 (351)
                      +++.|.+||+|...+ |  .+..+++...+.|+.+...        ++++.||+++. ..||+||+++... .......+
T Consensus        15 sA~YDhTIRfWqa~t-G--~C~rTiqh~dsqVNrLeiT--------pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALT-G--ICSRTIQHPDSQVNRLEIT--------PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eccCcceeeeeehhc-C--eEEEEEecCccceeeEEEc--------CCcchhhhccC-CeeEEEEccCCCCCceeEEecc
Confidence            578999999999999 8  6788998778899999999        88999999886 5799999998876 34445556


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..++.++.|..+|+.+++|++++.+++|..       ...|..+|+++..+|      +...      |++|..+|.|++
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp------nQte------Lis~dqsg~irv  150 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP------NQTE------LISGDQSGNIRV  150 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC------Ccce------EEeecCCCcEEE
Confidence            789999999999999999999999998864       445789999999995      5555      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccccccccccEEEEEee
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISWS  231 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~v~~v~~s  231 (351)
                      ||+..  ..+...+.    +.....|.++...|+|..++.+...|..++|++-+... ..+.++.++++|.+.+..+.+|
T Consensus       151 WDl~~--~~c~~~li----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  151 WDLGE--NSCTHELI----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             EEccC--CccccccC----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            99998  55554443    24456899999999999999999999999999965432 2457888999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL  310 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~  310 (351)
                      |++++|++++.|.+++||+..+.         ++.-..+.+|...++.++|+.  |+++|++|+.|+.+|+|+++ ++.+
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~---------~kle~~l~gh~rWvWdc~FS~--dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDF---------FKLELVLTGHQRWVWDCAFSA--DGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCc---------eeeEEEeecCCceEEeeeecc--CccEEEecCCCCceeecccccCcee
Confidence            99999999999999999998665         124445668889999999999  99999999999999999987 7777


Q ss_pred             hceeecc
Q 048511          311 KTLNHAT  317 (351)
Q Consensus       311 ~~~~~~~  317 (351)
                      +...+|.
T Consensus       294 ~qy~gh~  300 (311)
T KOG0315|consen  294 RQYQGHH  300 (311)
T ss_pred             eecCCcc
Confidence            7777665

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5e-39  Score=249.08  Aligned_cols=254  Identities=22%  Similarity=0.263  Sum_probs=220.4

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +...++|+||.+.|.++.|+        ++.++|+++|.||.+.|||..+......+.. ...-+..++|+|.|+.+++|
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws--------~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcG  115 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWS--------TDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACG  115 (343)
T ss_pred             eeeEEEecccccceeeeEec--------CCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEec
Confidence            34457899999999999999        8999999999999999999988766554433 24578899999999999998


Q ss_pred             CCcee--------------EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511           99 SSSYQ--------------VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        99 ~~~~~--------------~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  164 (351)
                      +.+..              +++.+.+.+|++.+.|+.|.      .| ..      |++++.|.+..+||+++  ++.+.
T Consensus       116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~------dD-~~------ilT~SGD~TCalWDie~--g~~~~  180 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL------DD-NH------ILTGSGDMTCALWDIET--GQQTQ  180 (343)
T ss_pred             CcCceeEEEecccccccccceeeeeecCccceeEEEEEc------CC-Cc------eEecCCCceEEEEEccc--ceEEE
Confidence            75543              34556688999999999998      43 44      99999999999999999  88777


Q ss_pred             EEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          165 VVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      .+.     +|.+.|.+++++| +++.+++|+-|+..++||++.+     .++++|.+|+..|++|+|.|+|.-|++|++|
T Consensus       181 ~f~-----GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~qtF~ghesDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  181 VFH-----GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQTFEGHESDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             Eec-----CCcccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeEeecccccccceEEEccCCCeeeecCCC
Confidence            776     9999999999999 9999999999999999999998     6799999999999999999999999999999


Q ss_pred             CcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhceeeccc
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLNHATF  318 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~~~~~  318 (351)
                      ++.++||++...          .+..+  .....+|++++|+.  .|++|.+|..|..+.+|| +.++....|.+|.+
T Consensus       251 ~tcRlyDlRaD~----------~~a~ys~~~~~~gitSv~FS~--SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN  316 (343)
T KOG0286|consen  251 ATCRLYDLRADQ----------ELAVYSHDSIICGITSVAFSK--SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN  316 (343)
T ss_pred             ceeEEEeecCCc----------EEeeeccCcccCCceeEEEcc--cccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence            999999999887          33322  23345699999999  899999999999999999 56888888888764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.8e-40  Score=266.40  Aligned_cols=253  Identities=20%  Similarity=0.207  Sum_probs=225.5

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeec--CCeEEecCCcee
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIE--GPVLVAGSSSYQ  103 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~  103 (351)
                      -|-+.+|..+.|+        .+++.|+|||.+|.+++|+......+ ....++...+.++.|+|.  +..++++..++.
T Consensus       172 ~gd~rPis~~~fS--------~ds~~laT~swsG~~kvW~~~~~~~~-~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt  242 (459)
T KOG0272|consen  172 VGDTRPISGCSFS--------RDSKHLATGSWSGLVKVWSVPQCNLL-QTLRGHTSRVGAAVFHPVDSDLNLATASADGT  242 (459)
T ss_pred             ccCCCcceeeEee--------cCCCeEEEeecCCceeEeecCCccee-EEEeccccceeeEEEccCCCccceeeeccCCc
Confidence            3567899999999        89999999999999999999987444 445566788999999997  668999999999


Q ss_pred             EEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          104 VSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       104 ~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +++|+.        +.+|...|..++|+      |+|++      |+|++.|.+-++||+++  +..+...     .+|.
T Consensus       243 vklw~~~~e~~l~~l~gH~~RVs~VafH------PsG~~------L~TasfD~tWRlWD~~t--k~ElL~Q-----EGHs  303 (459)
T KOG0272|consen  243 VKLWKLSQETPLQDLEGHLARVSRVAFH------PSGKF------LGTASFDSTWRLWDLET--KSELLLQ-----EGHS  303 (459)
T ss_pred             eeeeccCCCcchhhhhcchhhheeeeec------CCCce------eeecccccchhhccccc--chhhHhh-----cccc
Confidence            988764        77899999999999      79999      99999999999999998  4433333     3899


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..|.+++|+|||..+++|+.|..-+|||++++     .++..+.+|..+|.+|+|+|+|-.||||+.|++++|||++..+
T Consensus       304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             cccceeEecCCCceeeccCccchhheeecccC-----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence            99999999999999999999999999999998     5688999999999999999999999999999999999999887


Q ss_pred             ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccc
Q 048511          256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESS  322 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~  322 (351)
                                .+..+.+|..-|+.+.|+| ..|.+|++++.|++++||... ...+++|.+|.+.-..
T Consensus       379 ----------~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s  435 (459)
T KOG0272|consen  379 ----------ELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS  435 (459)
T ss_pred             ----------cceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence                      5777789999999999998 579999999999999999976 8899999999865443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-38  Score=242.05  Aligned_cols=269  Identities=20%  Similarity=0.273  Sum_probs=214.7

Q ss_pred             CCCCCceEEEEEccCCC-ce-EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTG-KF-VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      +++.|.+|.+|++..+. ++ ..++.+.||...|..+..+        +++++.++++.|+++++||+.+++.. ....+
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s--------~dg~~alS~swD~~lrlWDl~~g~~t-~~f~G  103 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS--------SDGNFALSASWDGTLRLWDLATGEST-RRFVG  103 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEc--------cCCceEEeccccceEEEEEecCCcEE-EEEEe
Confidence            36889999999987621 11 4578899999999999999        89999999999999999999998544 34456


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      +...+++++++++++.+++|+++..+++|.++.         .|.+.|.|+.|+|+.    +..+      |++++.|++
T Consensus       104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~----~~p~------Ivs~s~Dkt  173 (315)
T KOG0279|consen  104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE----SNPI------IVSASWDKT  173 (315)
T ss_pred             cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC----CCcE------EEEccCCce
Confidence            678999999999999999999999998887632         237889999999742    2445      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |++||++.  .+....+.     +|...++.++++|||...++|+.||.+.+||++.++     .++.+. |...|.+++
T Consensus       174 vKvWnl~~--~~l~~~~~-----gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-----~lysl~-a~~~v~sl~  240 (315)
T KOG0279|consen  174 VKVWNLRN--CQLRTTFI-----GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-----NLYSLE-AFDIVNSLC  240 (315)
T ss_pred             EEEEccCC--cchhhccc-----cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-----eeEecc-CCCeEeeEE
Confidence            99999998  55555554     899999999999999999999999999999999873     466654 778999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+|+.-+|+.+ .+..|+|||+........  -....+.. .+.......+++|++  +|..|.+|-.|+.|++|.+.
T Consensus       241 fspnrywL~~a-t~~sIkIwdl~~~~~v~~--l~~d~~g~s~~~~~~~clslaws~--dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  241 FSPNRYWLCAA-TATSIKIWDLESKAVVEE--LKLDGIGPSSKAGDPICLSLAWSA--DGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ecCCceeEeec-cCCceEEEeccchhhhhh--ccccccccccccCCcEEEEEEEcC--CCcEEEeeecCCcEEEEEee
Confidence            99996656554 566799999988874320  00001111 111122356778888  99999999999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-38  Score=253.69  Aligned_cols=257  Identities=20%  Similarity=0.300  Sum_probs=230.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.|++|++||..+ +++  ...++||++.|..|+|+        ..|++|++++.|-.+++||..+..........+..
T Consensus       126 as~d~tikv~D~~t-g~~--e~~LrGHt~sv~di~~~--------a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h  194 (406)
T KOG0295|consen  126 ASEDATIKVFDTET-GEL--ERSLRGHTDSVFDISFD--------ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH  194 (406)
T ss_pred             ecCCceEEEEEccc-hhh--hhhhhccccceeEEEEe--------cCccEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence            57899999999999 854  78999999999999999        88999999999999999999886555555566677


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      .+.++.|-|.|.++++++.+..++.|        .++.+|...|..++.+      .||.+      +++++.|.+|++|
T Consensus       195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~------~DGti------~As~s~dqtl~vW  262 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN------QDGTI------IASCSNDQTLRVW  262 (406)
T ss_pred             ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec------CCeeE------EEecCCCceEEEE
Confidence            88899999999999999999888655        4688999999999999      99999      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCC---------------CCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      -+.+  +++...++     .|+.+|.+++|.|.               ++++.+++.|++|++||+.++     .++.++
T Consensus       263 ~~~t--~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL  330 (406)
T KOG0295|consen  263 VVAT--KQCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTL  330 (406)
T ss_pred             Eecc--chhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEE
Confidence            9998  65555555     78889999999763               358999999999999999998     689999


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      .+|..+|.+++|+|.|+||+++.+|+++++||+++.+          +......|.+-+++++|+.  +..++++|+-|.
T Consensus       331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----------cmk~~~ah~hfvt~lDfh~--~~p~VvTGsVdq  398 (406)
T KOG0295|consen  331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----------CMKTLEAHEHFVTSLDFHK--TAPYVVTGSVDQ  398 (406)
T ss_pred             ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----------eeeccCCCcceeEEEecCC--CCceEEeccccc
Confidence            9999999999999999999999999999999999887          5666668999999999998  788999999999


Q ss_pred             eEEEEec
Q 048511          299 VARVFEA  305 (351)
Q Consensus       299 ~v~vw~~  305 (351)
                      .+++|.-
T Consensus       399 t~KvwEc  405 (406)
T KOG0295|consen  399 TVKVWEC  405 (406)
T ss_pred             eeeeeec
Confidence            9999963

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-38  Score=274.22  Aligned_cols=206  Identities=19%  Similarity=0.318  Sum_probs=189.2

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ..++.||.++|..+.|+        |+.++|+++|.|+++|+|.+.+..++                             
T Consensus       444 ~~~L~GH~GPVyg~sFs--------Pd~rfLlScSED~svRLWsl~t~s~~-----------------------------  486 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFS--------PDRRFLLSCSEDSSVRLWSLDTWSCL-----------------------------  486 (707)
T ss_pred             eEEeecCCCceeeeeec--------ccccceeeccCCcceeeeecccceeE-----------------------------
Confidence            45688999999999999        88999999999999999999986544                             


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                            -.++||..+|+++.|+      |.|-+      |||+|.|++.++|....  ....+.+.     +|-..|.|+
T Consensus       487 ------V~y~GH~~PVwdV~F~------P~GyY------Fatas~D~tArLWs~d~--~~PlRifa-----ghlsDV~cv  541 (707)
T KOG0263|consen  487 ------VIYKGHLAPVWDVQFA------PRGYY------FATASHDQTARLWSTDH--NKPLRIFA-----GHLSDVDCV  541 (707)
T ss_pred             ------EEecCCCcceeeEEec------CCceE------EEecCCCceeeeeeccc--CCchhhhc-----ccccccceE
Confidence                  2356899999999999      67888      99999999999999988  55555555     899999999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE  261 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  261 (351)
                      .|+|+..|+++|+.|.++++||..++     ..++.+.+|.++|.+++|||+|++|++|+.|+.|.+||+.++.      
T Consensus       542 ~FHPNs~Y~aTGSsD~tVRlWDv~~G-----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------  610 (707)
T KOG0263|consen  542 SFHPNSNYVATGSSDRTVRLWDVSTG-----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------  610 (707)
T ss_pred             EECCcccccccCCCCceEEEEEcCCC-----cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------
Confidence            99999999999999999999999998     5689999999999999999999999999999999999999987      


Q ss_pred             cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                          .+..+.+|.+.|.++.|+.  +|..||+|+.|..|++||+.
T Consensus       611 ----~v~~l~~Ht~ti~SlsFS~--dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  611 ----LVKQLKGHTGTIYSLSFSR--DGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             ----chhhhhcccCceeEEEEec--CCCEEEecCCCCeEEEEEch
Confidence                7888889999999999999  99999999999999999976

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7e-36  Score=231.67  Aligned_cols=259  Identities=15%  Similarity=0.239  Sum_probs=214.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC--c---cccee
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR--G---SSANT   75 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~--~---~~~~~   75 (351)
                      ++|.||.+.|||..+ .  ..++.+.--...|..++|+        |.++++|.|+.|....||++.+.  +   .+...
T Consensus        72 SaSqDGklIvWDs~T-t--nK~haipl~s~WVMtCA~s--------PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~  140 (343)
T KOG0286|consen   72 SASQDGKLIVWDSFT-T--NKVHAIPLPSSWVMTCAYS--------PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE  140 (343)
T ss_pred             eeccCCeEEEEEccc-c--cceeEEecCceeEEEEEEC--------CCCCeEEecCcCceeEEEecccccccccceeeee
Confidence            578999999999888 4  2345566668899999999        88999999999999999999855  2   12223


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+..-+.++.|-. ...|++++.+...-+        ...+.+|.+.|.++.++|     .+++.      +++|+-|
T Consensus       141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p-----~~~nt------FvSg~cD  208 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP-----SDGNT------FVSGGCD  208 (343)
T ss_pred             ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC-----CCCCe------EEecccc
Confidence            344455556666666 555666666655544        345889999999999996     47888      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      +..++||++.  +.+++.|.     +|+..|.+++|.|+|.-+++|+.|++.++||++..+.   -.++.-..-..+|++
T Consensus       209 ~~aklWD~R~--~~c~qtF~-----ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~---~a~ys~~~~~~gitS  278 (343)
T KOG0286|consen  209 KSAKLWDVRS--GQCVQTFE-----GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE---LAVYSHDSIICGITS  278 (343)
T ss_pred             cceeeeeccC--cceeEeec-----ccccccceEEEccCCCeeeecCCCceeEEEeecCCcE---EeeeccCcccCCcee
Confidence            9999999999  88888887     9999999999999999999999999999999998642   122222233458999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      ++||..|++|++|..|.++.+||.-.++          .+..+.+|...|+|+..+|  ||-.+++|+-|..+|||.
T Consensus       279 v~FS~SGRlLfagy~d~~c~vWDtlk~e----------~vg~L~GHeNRvScl~~s~--DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  279 VAFSKSGRLLFAGYDDFTCNVWDTLKGE----------RVGVLAGHENRVSCLGVSP--DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEcccccEEEeeecCCceeEeeccccc----------eEEEeeccCCeeEEEEECC--CCcEEEecchhHheeecC
Confidence            9999999999999999999999997776          6777789999999999999  999999999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=228.27  Aligned_cols=260  Identities=23%  Similarity=0.415  Sum_probs=209.4

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCc---ccceeecccccceeeeEeeecCCe
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRG---SSANTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      +..+..+++|.+.|..++|+        |. |..|||||.|+.||+|+...+.   +...+...+...+++++|+|.|++
T Consensus         4 l~~~~~~~gh~~r~W~~awh--------p~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~   75 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWH--------PGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY   75 (312)
T ss_pred             ceeEEeecCCCCcEEEEEec--------cCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE
Confidence            45678899999999999999        55 7899999999999999998532   233344556788999999999999


Q ss_pred             EEecCCceeE----------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-CcceE
Q 048511           95 LVAGSSSYQV----------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-TGIWM  163 (351)
Q Consensus        95 l~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~  163 (351)
                      |++++-+...          .+...+.||...|.|++|+      .+|++      ||+++.|+.|-||.+... +-.+.
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws------~sG~~------LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS------ASGNY------LATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc------CCCCE------EEEeeCCCeEEEEEecCCCcEEEE
Confidence            9998765544          5566789999999999999      89999      999999999999999852 12233


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      ..+     ..|...|..+.|+|...+|+++++|.+|++|+-...  ..+.+++++.+|...|.+++|+|.|..|++++.|
T Consensus       144 aVL-----~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  144 AVL-----QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             eee-----ccccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence            333     488999999999999999999999999999988732  3378999999999999999999999999999999


Q ss_pred             CcEEEEcCCCcccccc--------------------------------CccceEEec-cccccccceeEEEEeeeCCCcE
Q 048511          244 QTTRVFAPWKNVASLM--------------------------------GENSWHEVA-RPQVHGHDINCVTIIQGKGNHR  290 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~--------------------------------~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~  290 (351)
                      ++++||.....-....                                ....|+.+. ....|+..|++++|.| ....+
T Consensus       217 ~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-~~~~~  295 (312)
T KOG0645|consen  217 GTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-KVSNR  295 (312)
T ss_pred             cceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-CCCCc
Confidence            9999998432110000                                001122221 3346788899999999 33789


Q ss_pred             EEEecCCCeEEEEecC
Q 048511          291 FVSGADEKVARVFEAP  306 (351)
Q Consensus       291 l~s~~~dg~v~vw~~~  306 (351)
                      |++|++||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999863

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-37  Score=251.08  Aligned_cols=259  Identities=17%  Similarity=0.270  Sum_probs=224.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+..|.+.+|+...   +.....+++|+.+|.+|.|+        .++.+++||+.+|.|++|+.+- ..+......+.
T Consensus       113 tgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws--------~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~  180 (464)
T KOG0284|consen  113 TGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWS--------HNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHA  180 (464)
T ss_pred             eecccccEEEecCce---eeHHHHhhhhcccceeEEEc--------cCCCEEEEcCCCceEEecccch-hhhHHhhHhhh
Confidence            588899999999865   23334678999999999999        8999999999999999999864 33444444555


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+++++|+|+...+++++.++.+++|..        +.||.-.|.+++|+      |...+      +++||.|+.|++
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH------P~kgL------iasgskDnlVKl  248 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH------PTKGL------IASGSKDNLVKL  248 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC------Cccce------eEEccCCceeEe
Confidence            78999999999999999999999998864        67888899999999      55667      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||.++  +.++.++.     .|...|..+.|+|++++|++++.|..+++||+++.     +.+..+++|...|+++.|+|
T Consensus       249 WDprS--g~cl~tlh-----~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  249 WDPRS--GSCLATLH-----GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             ecCCC--cchhhhhh-----hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHHHhhcchhhheeecccc
Confidence            99999  88887776     89999999999999999999999999999999964     55889999999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 -SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       ...+|.+|+.||.|..|.+...+         .......+|...|++++|+|  =|.+|++|+.|..+++|...
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~~~~---------p~~~i~~AHd~~iwsl~~hP--lGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVGLEE---------PLGEIPPAHDGEIWSLAYHP--LGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccccceeeccCCCceEEEeccccc---------cccCCCcccccceeeeeccc--cceeEeecCCCcceeeeccC
Confidence             55788999999999999987433         12334568999999999999  89999999999999999843

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-35  Score=226.09  Aligned_cols=255  Identities=20%  Similarity=0.278  Sum_probs=211.7

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----cceeecccccceeeeEeeecCCe
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----SANTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      +....++++|++.|+.++..    +   .+.+.+++++.|.++.+|++.....    ......++...+..++.+++|++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~----~---~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~   77 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIK----I---KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF   77 (315)
T ss_pred             heeeeeecCCCceEEEEEee----c---CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce
Confidence            45667899999999999998    2   3467999999999999999976533    23344456778899999999999


Q ss_pred             EEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511           95 LVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus        95 l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  166 (351)
                      .++++.++.+++|..        +.+|...|.+++|+      +|.+.      +++|+.|++|++|+...   .+..++
T Consensus        78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s------~dn~q------ivSGSrDkTiklwnt~g---~ck~t~  142 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS------TDNRQ------IVSGSRDKTIKLWNTLG---VCKYTI  142 (315)
T ss_pred             EEeccccceEEEEEecCCcEEEEEEecCCceEEEEec------CCCce------eecCCCcceeeeeeecc---cEEEEE
Confidence            999999999988754        77899999999999      78888      99999999999999984   444443


Q ss_pred             EeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511          167 TVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      .  . ..+...|.|++|+|+  ..+|++++.|++|++||+++-     +....+.+|.+.++.+++||||.+.++|+.||
T Consensus       143 ~--~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg  214 (315)
T KOG0279|consen  143 H--E-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG  214 (315)
T ss_pred             e--c-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-----chhhccccccccEEEEEECCCCCEEecCCCCc
Confidence            3  1 122778999999998  679999999999999999996     66888999999999999999999999999999


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      .+.+||++.++          .+..+ .|...|.+++|+|   .++.++...+-.|+|||+. +.++..|+...
T Consensus       215 ~~~LwdL~~~k----------~lysl-~a~~~v~sl~fsp---nrywL~~at~~sIkIwdl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  215 EAMLWDLNEGK----------NLYSL-EAFDIVNSLCFSP---NRYWLCAATATSIKIWDLESKAVVEELKLDG  274 (315)
T ss_pred             eEEEEEccCCc----------eeEec-cCCCeEeeEEecC---CceeEeeccCCceEEEeccchhhhhhccccc
Confidence            99999999887          33333 5778899999999   4555555566679999987 77777776433

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-35  Score=242.57  Aligned_cols=255  Identities=18%  Similarity=0.238  Sum_probs=212.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.++||+...    ..+.+|..|.++|.++.|+        ..|.+|++++.|+++.+||..++...+..... .
T Consensus       252 tG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWn--------k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~-s  318 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWN--------KKGTYILSGGVDGTTILWDAHTGTVKQQFEFH-S  318 (524)
T ss_pred             EeecCcEEEEEecCc----hhhhhhhccCCceEEEEEc--------CCCCEEEeccCCccEEEEeccCceEEEeeeec-c
Confidence            588999999999987    4567899999999999999        89999999999999999999888765544332 2


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      .+...+.|..+ ..+++.+.++.+.+        ..++.+|.++|.++.|+      +.+.+      |+++|.|++++|
T Consensus       319 ~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n------~tg~L------LaS~SdD~Tlki  385 (524)
T KOG0273|consen  319 APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN------PTGSL------LASCSDDGTLKI  385 (524)
T ss_pred             CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC------CCCce------EEEecCCCeeEe
Confidence            23344444443 34555555555533        45688999999999999      78889      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCC---------CEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      |....  ......+.     .|...|+.+.|+|.+         ..+++++.|++|++||+..+     .++..+..|..
T Consensus       386 Ws~~~--~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-----v~i~~f~kH~~  453 (524)
T KOG0273|consen  386 WSMGQ--SNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-----VPIHTLMKHQE  453 (524)
T ss_pred             eecCC--Ccchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-----ceeEeeccCCC
Confidence            99877  55555555     899999999999964         47899999999999999998     78999999999


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      +|++++|+|+|+++|+|+.||.|.+|+++.++          .+....+ ...|..++|+.  +|.+|..+-.|+.+.+-
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~----------l~~s~~~-~~~Ifel~Wn~--~G~kl~~~~sd~~vcvl  520 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK----------LVKSYQG-TGGIFELCWNA--AGDKLGACASDGSVCVL  520 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccchh----------eeEeecC-CCeEEEEEEcC--CCCEEEEEecCCCceEE
Confidence            99999999999999999999999999998887          4544443 34599999999  89999999999999998


Q ss_pred             ecC
Q 048511          304 EAP  306 (351)
Q Consensus       304 ~~~  306 (351)
                      |+.
T Consensus       521 dlr  523 (524)
T KOG0273|consen  521 DLR  523 (524)
T ss_pred             Eec
Confidence            864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.8e-35  Score=253.54  Aligned_cols=311  Identities=48%  Similarity=0.859  Sum_probs=255.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      .|+.+..|.++.-.. +++..+..+.||.+.|.+++|..+.     .+.-+|||+|+|..||||.+.-........    
T Consensus       164 ~Ggs~~~v~~~s~~~-d~f~~v~el~GH~DWIrsl~f~~~~-----~~~~~laS~SQD~yIRiW~i~~~~~~~~~~----  233 (764)
T KOG1063|consen  164 CGGSKFVVDLYSSSA-DSFARVAELEGHTDWIRSLAFARLG-----GDDLLLASSSQDRYIRIWRIVLGDDEDSNE----  233 (764)
T ss_pred             ecCcceEEEEeccCC-cceeEEEEeeccchhhhhhhhhccC-----CCcEEEEecCCceEEEEEEEEecCCccccc----
Confidence            477888899998876 7899999999999999999998321     234589999999999999986544222111    


Q ss_pred             cceeeeEeeecCCeEEec-CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511           81 KEVISLASYIEGPVLVAG-SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT  159 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  159 (351)
                       .......-++...+.+. .-...+.+...+.||.+.|+++.|+      |.+..      |++++.|.++.+|...+..
T Consensus       234 -~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~------p~~~~------LLSASaDksmiiW~pd~~t  300 (764)
T KOG1063|consen  234 -REDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH------PEGLD------LLSASADKSMIIWKPDENT  300 (764)
T ss_pred             -cccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc------cchhh------heecccCcceEEEecCCcc
Confidence             11112222233333332 3334556667788999999999999      67777      9999999999999999888


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS  239 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  239 (351)
                      |.++...+++...+.....+...|+|+++.+++-+..|..++|.  +.+...+.....+.+|...|.+|+|+|.|.+|++
T Consensus       301 GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLs  378 (764)
T KOG1063|consen  301 GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLS  378 (764)
T ss_pred             ceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe--ccCccceeeccccccccccceeeeecCCCCEEEE
Confidence            89999999999888888899999999999999999999999998  3333446677788899999999999999999999


Q ss_pred             EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecccc
Q 048511          240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQ  319 (351)
Q Consensus       240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~  319 (351)
                      .+.|.+-|||-....+      ..|+++.+++.|++.++|++|-+  ....|++|.+...+|+|+.+..+++.++..++.
T Consensus       379 vs~DQTTRlFa~wg~q------~~wHEiaRPQiHGyDl~c~~~vn--~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~  450 (764)
T KOG1063|consen  379 VSLDQTTRLFARWGRQ------QEWHEIARPQIHGYDLTCLSFVN--EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGK  450 (764)
T ss_pred             eccccceeeecccccc------cceeeecccccccccceeeehcc--CCceeeecccceeeeeecCcHHHHHHHHHHhCc
Confidence            9999999999887443      46999999999999999999998  678899999999999999999999999999983


Q ss_pred             ccchhhhhHHhHHhhcceeeeccCCCCCee
Q 048511          320 ESSFHEDLQADVQILGANMSALGLSQKPIY  349 (351)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (351)
                      .....    ..+|. |+++|.||||||++|
T Consensus       451 ~~~~~----~~~p~-gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  451 CFKGS----DELPD-GANVPALGLSNKAFF  475 (764)
T ss_pred             cccCc----hhccc-ccccccccccCCCCc
Confidence            33332    35688 999999999999999

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-35  Score=233.41  Aligned_cols=257  Identities=23%  Similarity=0.253  Sum_probs=227.9

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .....+.+|..+|+.+-|+        |+-..+++++.|++|++||..+++....+ .++...+..+.|+..|++++.++
T Consensus        99 ~l~~~l~g~r~~vt~v~~h--------p~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFH--------PSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             Cchhhhhccccceeeeeec--------cCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecCccEEEecC
Confidence            3456677899999999999        78889999999999999999999884443 44555699999999999999999


Q ss_pred             CceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511          100 SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus       100 ~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      .+..+++|.         .+.+|...|.++.|.      |.+.+      +++++.|.+|+.|++.+  +.++.+++   
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~------P~gd~------ilS~srD~tik~We~~t--g~cv~t~~---  232 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL------PLGDH------ILSCSRDNTIKAWECDT--GYCVKTFP---  232 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEE------ecCCe------eeecccccceeEEeccc--ceeEEecc---
Confidence            988776664         467899999999999      67788      99999999999999999  99998887   


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC---------------CC
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---------------SD  235 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---------------~~  235 (351)
                        +|...+..++.+.||.++++++.|.+|++|-+.++     ++...+..|+-+|.+++|.|.               ++
T Consensus       233 --~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~  305 (406)
T KOG0295|consen  233 --GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQ  305 (406)
T ss_pred             --CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-----hhhhhhhccccceEEEEecccccCcchhhccCCCCCcc
Confidence              88889999999999999999999999999999987     678889999999999999873               25


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      ++.+++.|++|++||+.++.          .+.++.+|...|..++|+|  .|++|+++.+|+++++||++ +++++++.
T Consensus       306 ~l~s~SrDktIk~wdv~tg~----------cL~tL~ghdnwVr~~af~p--~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  306 VLGSGSRDKTIKIWDVSTGM----------CLFTLVGHDNWVRGVAFSP--GGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             EEEeecccceEEEEeccCCe----------EEEEEecccceeeeeEEcC--CCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            89999999999999999987          7777889999999999999  99999999999999999997 88888888


Q ss_pred             ecccccc
Q 048511          315 HATFQES  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      .|...-.
T Consensus       374 ah~hfvt  380 (406)
T KOG0295|consen  374 AHEHFVT  380 (406)
T ss_pred             CCcceeE
Confidence            7664433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=9.2e-35  Score=232.88  Aligned_cols=262  Identities=23%  Similarity=0.319  Sum_probs=220.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee---ec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT---QS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~---~~   77 (351)
                      +|++||.++|||...    +...++.||.++|.+++|.-   ++  +....|+++|.|.++++|.++.+......   ..
T Consensus       120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~---~n--~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVI---KN--SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEe---cC--CccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence            689999999999987    56789999999999999871   11  33447999999999999999887654322   23


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEE---------------------------------eccccccceEEEEecC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES---------------------------------LLIGHEDWVYSVQWEP  124 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------------~~~~h~~~v~~l~~~p  124 (351)
                      ++...+-++...++|..+++|+.+..+.+|.                                 .+.||..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            6677888999999999999999888776654                                 3789999999999993


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511          125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~  204 (351)
                             ...      +.+++.|.+|+.||+.+  +.....+.      ....+.++..+|..++|++|+.|..|++||.
T Consensus       271 -------~~v------~yS~SwDHTIk~WDlet--g~~~~~~~------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  271 -------ATV------IYSVSWDHTIKVWDLET--GGLKSTLT------TNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             -------CCc------eEeecccceEEEEEeec--ccceeeee------cCcceeEeecccccceeeecCCCCceeecCC
Confidence                   445      99999999999999999  66666554      3457899999999999999999999999999


Q ss_pred             ccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511          205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII  283 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (351)
                      +++..  -...+++.+|.+.|.++.|+|... +|++++.|+++++||++..+.         ++..+.+|...|.++.|.
T Consensus       330 R~~~g--s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---------plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  330 RTGDG--SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---------PLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             CCCCC--ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---------cceeeccCCceEEEEecc
Confidence            88743  145678899999999999999654 588999999999999988762         666777899999999998


Q ss_pred             eeCCCcEEEEecCCCeEEEEecC
Q 048511          284 QGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       284 ~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .   +.+|++||.|..|+|+.-.
T Consensus       399 ~---~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 E---GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             C---CceEEeccCcceEEEeccc
Confidence            6   8899999999999999743

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.9e-35  Score=250.93  Aligned_cols=283  Identities=18%  Similarity=0.252  Sum_probs=222.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.++|||+.. +  .+.+.|+||.+.|.++.|.    |+  .....|++|..|+++++||+++..........+.
T Consensus       122 tggaD~~v~VWdi~~-~--~~th~fkG~gGvVssl~F~----~~--~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~  192 (775)
T KOG0319|consen  122 TGGADGRVKVWDIKN-G--YCTHSFKGHGGVVSSLLFH----PH--WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK  192 (775)
T ss_pred             eccccceEEEEEeeC-C--EEEEEecCCCceEEEEEeC----Cc--cchhheeecCCCceEEEEEcccCchHHHHHHhhh
Confidence            689999999999998 6  6889999999999999999    44  5556899999999999999996655333334445


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEE-----------------------------------------------------
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVE-----------------------------------------------------  107 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------------------------------  107 (351)
                      +.++++++.+++..+++.+++..+.+|                                                     
T Consensus       193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~  272 (775)
T KOG0319|consen  193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKC  272 (775)
T ss_pred             hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchh
Confidence            566677776666655553332221000                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 048511          108 --------------------------------------------------------------------------------  107 (351)
Q Consensus       108 --------------------------------------------------------------------------------  107 (351)
                                                                                                      
T Consensus       273 ~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~  352 (775)
T KOG0319|consen  273 VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYT  352 (775)
T ss_pred             hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEe
Confidence                                                                                            


Q ss_pred             ------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          108 ------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       108 ------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                            +.+.||++.|.++...      .+|.+      |+||+.|+++++|.+...   +.....+....+|...|.++
T Consensus       353 ~~~~~c~ii~GH~e~vlSL~~~------~~g~l------lat~sKD~svilWr~~~~---~~~~~~~a~~~gH~~svgav  417 (775)
T KOG0319|consen  353 LPTSYCQIIPGHTEAVLSLDVW------SSGDL------LATGSKDKSVILWRLNNN---CSKSLCVAQANGHTNSVGAV  417 (775)
T ss_pred             cCCCceEEEeCchhheeeeeec------ccCcE------EEEecCCceEEEEEecCC---cchhhhhhhhccccccccee
Confidence                  0156788888888844      46667      999999999999998542   12223334456899999999


Q ss_pred             EEcCCC-CEEEEEeeCCeEEEEEcccCcccCc----ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          182 HWSPDG-RSILAHGYGGAFHLWRNVGVDIDNW----QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       182 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                      +++..+ .++++++.|.++++|++...+...+    ++..+...|...|++|+.+|+.+++||||.|++.+||+++... 
T Consensus       418 a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-  496 (775)
T KOG0319|consen  418 AGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-  496 (775)
T ss_pred             eecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-
Confidence            997655 5899999999999999976433222    2233556799999999999999999999999999999998655 


Q ss_pred             cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                               ....+.+|...|+|+.|++  ..+.++++|.|++|+||.++ ..++++|.+|+..
T Consensus       497 ---------l~~vLsGH~RGvw~V~Fs~--~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a  549 (775)
T KOG0319|consen  497 ---------LLGVLSGHTRGVWCVSFSK--NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA  549 (775)
T ss_pred             ---------EEEEeeCCccceEEEEecc--ccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence                     7778889999999999999  88999999999999999997 8999999988753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-35  Score=233.60  Aligned_cols=255  Identities=18%  Similarity=0.254  Sum_probs=210.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|..|++|+|||..+   +.++..+.||++.|.|+.|.          .+.+++|+.|.+|++||+++++++.... .+.
T Consensus       212 SGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd----------~rviisGSSDsTvrvWDv~tge~l~tli-hHc  277 (499)
T KOG0281|consen  212 SGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYD----------ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHC  277 (499)
T ss_pred             cccccCceEEecccc---HHHHHhhhcCCCcEEeeecc----------ceEEEecCCCceEEEEeccCCchhhHHh-hhc
Confidence            588999999999877   36788999999999999998          5699999999999999999998876544 233


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      ..++.+.|+  +.++++++.+..+.+|.           .+.||...|+.+.|+        .++      +++++.|.+
T Consensus       278 eaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--------~ky------IVsASgDRT  341 (499)
T KOG0281|consen  278 EAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--------DKY------IVSASGDRT  341 (499)
T ss_pred             ceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--------cce------EEEecCCce
Confidence            455555553  56777777777777765           478999999999998        247      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |++|++.+  ++++.++.     +|...|-|+.+  .++++++|+.|.+|++||+..+     .+++.+++|+.-|.++.
T Consensus       342 ikvW~~st--~efvRtl~-----gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  342 IKVWSTST--CEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIR  407 (499)
T ss_pred             EEEEeccc--eeeehhhh-----cccccceehhc--cCeEEEecCCCceEEEEecccc-----HHHHHHhchHHhhhhee
Confidence            99999999  88888776     88888888876  6899999999999999999998     78999999999999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |.  .+.+++|+.||.|+|||+.......... .--++.....|.+.|..+.|    |...|++++.|.+|.|||..
T Consensus       408 Fd--~krIVSGaYDGkikvWdl~aaldpra~~-~~~Cl~~lv~hsgRVFrLQF----D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  408 FD--NKRIVSGAYDGKIKVWDLQAALDPRAPA-STLCLRTLVEHSGRVFRLQF----DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ec--CceeeeccccceEEEEecccccCCcccc-cchHHHhhhhccceeEEEee----cceEEEeccCCCeEEEEEcC
Confidence            95  5689999999999999998765321000 11134455578888999999    45789999999999999965

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=214.13  Aligned_cols=242  Identities=19%  Similarity=0.269  Sum_probs=206.5

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ....||+||+.+ ++..++.++.+|+..|+++.|.        .+|++++|||.||+++|||++..........  ..++
T Consensus        59 ~~qhvRlyD~~S-~np~Pv~t~e~h~kNVtaVgF~--------~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~--~spV  127 (311)
T KOG0315|consen   59 GNQHVRLYDLNS-NNPNPVATFEGHTKNVTAVGFQ--------CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH--NSPV  127 (311)
T ss_pred             cCCeeEEEEccC-CCCCceeEEeccCCceEEEEEe--------ecCeEEEecCCCceEEEEeccCcccchhccC--CCCc
Confidence            456799999999 7777999999999999999999        8999999999999999999998555444433  4689


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      .++..+|+...|++++..+.+.+|..-.         .-...|.++...      +||.+      ++.+...|..++|+
T Consensus       128 n~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~------~dgsm------l~a~nnkG~cyvW~  195 (311)
T KOG0315|consen  128 NTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM------PDGSM------LAAANNKGNCYVWR  195 (311)
T ss_pred             ceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc------CCCcE------EEEecCCccEEEEE
Confidence            9999999999999999999999987532         224578999999      89999      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                      +-... ......++..+..|+..+..+.++|++++|++++.|.+++||+.++-    ++....+.+|...++..+||.||
T Consensus       196 l~~~~-~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg  270 (311)
T KOG0315|consen  196 LLNHQ-TASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADG  270 (311)
T ss_pred             ccCCC-ccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----eeeEEEeecCCceEEeeeeccCc
Confidence            97621 11122233445689999999999999999999999999999999875    25677888999999999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII  283 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (351)
                      +||+|++.|+.+++||+..++          .+....+|.....|++..
T Consensus       271 ~YlvTassd~~~rlW~~~~~k----------~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  271 EYLVTASSDHTARLWDLSAGK----------EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cEEEecCCCCceeecccccCc----------eeeecCCcccccEEEEee
Confidence            999999999999999999988          777788888888787764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-33  Score=232.70  Aligned_cols=271  Identities=17%  Similarity=0.219  Sum_probs=224.0

Q ss_pred             CCCCCceEEEEEccC-CCceEEEEeee------ec----CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511            1 MGGLDNKIHLYRGQR-TGKFVRACELK------GH----TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus         1 tg~~dg~i~vw~~~~-~~~~~~~~~~~------~h----~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   69 (351)
                      +|+.|-+.++|++.. .........|+      ++    ...|++++|+        .+|..||+|+.||.+++|+....
T Consensus       196 sg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--------~~G~~LatG~~~G~~riw~~~G~  267 (524)
T KOG0273|consen  196 SGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--------NDGTLLATGSEDGEARIWNKDGN  267 (524)
T ss_pred             ccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--------CCCCeEEEeecCcEEEEEecCch
Confidence            467788899999874 11111111111      22    2479999999        89999999999999999998754


Q ss_pred             cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc--------ccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      .  ......+..++.++.|+..|.+|++++.++.+.+|....        -|..+-..+.|-      .+ .-      |
T Consensus       268 l--~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~------~~-~~------F  332 (524)
T KOG0273|consen  268 L--ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ------SN-DE------F  332 (524)
T ss_pred             h--hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe------cC-ce------E
Confidence            3  233445577999999999999999999999887776543        355555667776      23 33      8


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ++++.|+.|+++.+..  ..++.++.     +|.+.|.++.|+|.+.+|++++.|++++||.....     .....+++|
T Consensus       333 ~ts~td~~i~V~kv~~--~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~H  400 (524)
T KOG0273|consen  333 ATSSTDGCIHVCKVGE--DRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAH  400 (524)
T ss_pred             eecCCCceEEEEEecC--CCcceeee-----cccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhh
Confidence            9999999999999988  77777777     89999999999999999999999999999998776     568899999


Q ss_pred             cccEEEEEeecCC---------CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511          222 FAAVMDISWSRSS---------DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       222 ~~~v~~v~~sp~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                      ...|..+.|+|.|         ..+++++.|++|++||+..+.          ++..+..|..+|++++|+|  +++++|
T Consensus       401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----------~i~~f~kH~~pVysvafS~--~g~ylA  468 (524)
T KOG0273|consen  401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----------PIHTLMKHQEPVYSVAFSP--NGRYLA  468 (524)
T ss_pred             ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----------eeEeeccCCCceEEEEecC--CCcEEE
Confidence            9999999999964         578999999999999998887          7888889999999999999  999999


Q ss_pred             EecCCCeEEEEecC-chhhhceeeccc
Q 048511          293 SGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       293 s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      +|+.||.|.+|+.+ ++.++++.+-..
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~  495 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGG  495 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCe
Confidence            99999999999988 888887776554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=237.92  Aligned_cols=261  Identities=15%  Similarity=0.195  Sum_probs=221.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|+.|+||++...+  .+++++.+|..+|..++|+        .+|..|+|+|.|+.|++||++++++.......  
T Consensus       232 S~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s--------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--  299 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFN--------NCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--  299 (503)
T ss_pred             ecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhcc--------ccCCeeeeeecceeeeeeccccceEEEEEecC--
Confidence            58999999999998744  7899999999999999999        88999999999999999999999988766654  


Q ss_pred             cceeeeEeeecC-CeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           81 KEVISLASYIEG-PVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        81 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      ..+.++.|+|++ +.+++|..++.+..|..        +..|-+.|..+.|.      +++..      +++.+.|+.++
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~------~~g~r------FissSDdks~r  367 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV------DEGRR------FISSSDDKSVR  367 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc------cCCce------EeeeccCccEE
Confidence            477889999998 78889999999887764        55688999999999      78888      99999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc--ccEEEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF--AAVMDIS  229 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~--~~v~~v~  229 (351)
                      ||+.+.  +..++.+..    .......++..+|+++++++-+.|+.|.+|.+...-.  ....+.+.+|.  +.-..+.
T Consensus       368 iWe~~~--~v~ik~i~~----~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r--~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  368 IWENRI--PVPIKNIAD----PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR--LNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             EEEcCC--Cccchhhcc----hhhccCcceecCCCCCeehhhccCceEEEEecccccc--cCHhhhhcceeccCceeeEE
Confidence            999987  544433321    2223466899999999999999999999998754321  24456777875  4456789


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      |||||.+|++|+.||.+.+||.++.+          .+..+++|..++..+.|+| .....+|+++.||.|++|+
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~k----------l~~~lkah~~~ci~v~wHP-~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTK----------LVSKLKAHDQPCIGVDWHP-VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhh----------hhhccccCCcceEEEEecC-CCcceeEecccCceeEecC
Confidence            99999999999999999999998877          7888889999999999999 4577899999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.9e-34  Score=225.76  Aligned_cols=250  Identities=17%  Similarity=0.208  Sum_probs=218.2

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      ++..+.+++|.+.|.|+++.        |...+|+||+.|++|+|||+.+++....+ .++-..+..+++++-..+++++
T Consensus       141 wKl~rVi~gHlgWVr~vavd--------P~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVD--------PGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             ceehhhhhhccceEEEEeeC--------CCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEe
Confidence            46677889999999999999        77899999999999999999998765443 3445678899999999999999


Q ss_pred             CCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511           99 SSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus        99 ~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      +.+..+++|..        +.||-..|+|++.+      |.-..      |++|+.|.++++||+++  ...+..+.   
T Consensus       212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh------PTldv------l~t~grDst~RvWDiRt--r~~V~~l~---  274 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH------PTLDV------LVTGGRDSTIRVWDIRT--RASVHVLS---  274 (460)
T ss_pred             cCCCeeEEEechhhhhHHHhccccceeEEEecc------cccee------EEecCCcceEEEeeecc--cceEEEec---
Confidence            99999998864        66899999999999      56667      99999999999999999  66666665   


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                        +|..+|.++.+.|....+++|+.|++|++||++.+     +...++..|...|++++.+|....+|+++.| .|+-|+
T Consensus       275 --GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag-----kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~  346 (460)
T KOG0285|consen  275 --GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG-----KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWK  346 (460)
T ss_pred             --CCCCcceeEEeecCCCceEEecCCceEEEeeeccC-----ceeEeeecccceeeEEecCCchhhhhccCCc-cceecc
Confidence              99999999999998889999999999999999998     4577888899999999999999999999887 689999


Q ss_pred             CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      +..+.          .+..+.+|..-|++++...   ..++++|++.|.+.+||.+ +...+.++.
T Consensus       347 ~p~g~----------f~~nlsgh~~iintl~~ns---D~v~~~G~dng~~~fwdwksg~nyQ~~~t  399 (460)
T KOG0285|consen  347 LPEGE----------FLQNLSGHNAIINTLSVNS---DGVLVSGGDNGSIMFWDWKSGHNYQRGQT  399 (460)
T ss_pred             CCccc----------hhhccccccceeeeeeecc---CceEEEcCCceEEEEEecCcCcccccccc
Confidence            98887          5666788999999999987   5689999999999999976 665555543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-33  Score=224.20  Aligned_cols=261  Identities=21%  Similarity=0.254  Sum_probs=217.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|..-.+|+..+ +.  ....+.+|.+.|+++.|+        .++.+||||+.+|.|+||+..++.....+. ...
T Consensus        81 TGGgDD~AflW~~~~-ge--~~~eltgHKDSVt~~~Fs--------hdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~  148 (399)
T KOG0296|consen   81 TGGGDDLAFLWDIST-GE--FAGELTGHKDSVTCCSFS--------HDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEV  148 (399)
T ss_pred             ecCCCceEEEEEccC-Cc--ceeEecCCCCceEEEEEc--------cCceEEEecCCCccEEEEEcccCceEEEee-ccc
Confidence            689999999999999 74  567889999999999999        899999999999999999999987766554 234


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.-+.|+|.+.+|++|..++.+-+|        +.+.||..++++=.|.      |+|+.      ++++..||+|++
T Consensus       149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~------pdGKr------~~tgy~dgti~~  216 (399)
T KOG0296|consen  149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI------PDGKR------ILTGYDDGTIIV  216 (399)
T ss_pred             CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc------CCCce------EEEEecCceEEE
Confidence            578889999999999999999988554        4578999999999999      78999      999999999999


Q ss_pred             EeccCCCcceEEEEEecc----------------------------------------------ccccccceEEEEE---
Q 048511          153 WQPEKTTGIWMNVVTVGE----------------------------------------------LSHSALGFYGGHW---  183 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~i~~i~~---  183 (351)
                      ||+.+  +.++..+.-.+                                              ...+...+.|+.+   
T Consensus       217 Wn~kt--g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  217 WNPKT--GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EecCC--CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            99998  55554443000                                              0012222233333   


Q ss_pred             cCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511          184 SPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  263 (351)
                      +..-.+.|+|+.||+|.|||+....      ++..-.|...|..+.|-+ ..+|++++.||.|+.||.+++.        
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~~------~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~--------  359 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAAST------LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ--------  359 (399)
T ss_pred             ccccchhhcccccceEEEEecccch------hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc--------
Confidence            3344577889999999999998852      445556889999999999 6899999999999999999998        


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        ....+.+|...|.+++++|  +.++++++|.|+..+||+.+
T Consensus       360 --l~~~y~GH~~~Il~f~ls~--~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 --LKFTYTGHQMGILDFALSP--QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --eEEEEecCchheeEEEEcC--CCcEEEEecCCCeEEEEecC
Confidence              7777889999999999999  99999999999999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=244.14  Aligned_cols=255  Identities=20%  Similarity=0.247  Sum_probs=221.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc---ceeecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS---ANTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~~~~~   78 (351)
                      +++.+.+|+|+..+ -.   ...+.||++.|.++...        .+|.+|+|||.|.++++|.+++....   ......
T Consensus       342 ATNs~~lr~y~~~~-~~---c~ii~GH~e~vlSL~~~--------~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g  409 (775)
T KOG0319|consen  342 ATNSPELRLYTLPT-SY---CQIIPGHTEAVLSLDVW--------SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG  409 (775)
T ss_pred             EeCCCceEEEecCC-Cc---eEEEeCchhheeeeeec--------ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence            56778899998877 32   23788999999999955        46789999999999999999554432   223344


Q ss_pred             cccceeeeEeeecC-CeEEecCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           79 YRKEVISLASYIEG-PVLVAGSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        79 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                      +...+.+++++..+ .++++++.+..+++|..                 ...|.+.|+|++++      |+..+      
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia------~ndkL------  477 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA------PNDKL------  477 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec------CCCce------
Confidence            56677788886655 47778888988887753                 23689999999999      67888      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      +||||.|++.+||+++.  .....++.     +|...++++.|+|..+.+++++.|++|+||.+.+.     .+++++.+
T Consensus       478 iAT~SqDktaKiW~le~--~~l~~vLs-----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-----SClkT~eG  545 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQ--LRLLGVLS-----GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-----SCLKTFEG  545 (775)
T ss_pred             EEecccccceeeecccC--ceEEEEee-----CCccceEEEEeccccceeEeccCCceEEEEEeccc-----eeeeeecC
Confidence            99999999999999996  77777776     99999999999999999999999999999999995     78999999


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      |...|..+.|-.++..|++++.||-|++|++.+..          +...+..|...|++++.++  ...++++|+.||.|
T Consensus       546 H~~aVlra~F~~~~~qliS~~adGliKlWnikt~e----------C~~tlD~H~DrvWaL~~~~--~~~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  546 HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE----------CEMTLDAHNDRVWALSVSP--LLDMFVTGGGDGRI  613 (775)
T ss_pred             ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh----------hhhhhhhccceeEEEeecC--ccceeEecCCCeEE
Confidence            99999999999999999999999999999999988          7888889999999999999  88899999999999


Q ss_pred             EEEe
Q 048511          301 RVFE  304 (351)
Q Consensus       301 ~vw~  304 (351)
                      .+|.
T Consensus       614 ~~wk  617 (775)
T KOG0319|consen  614 IFWK  617 (775)
T ss_pred             EEee
Confidence            9997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=234.05  Aligned_cols=234  Identities=16%  Similarity=0.210  Sum_probs=206.2

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      ...|..|.|.        |+|+.|++|+..|.+.+|+.... ....+...+...+.++.|++++..+++|+..+.++.|+
T Consensus        96 kc~V~~v~Wt--------PeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq  166 (464)
T KOG0284|consen   96 KCPVNVVRWT--------PEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ  166 (464)
T ss_pred             ccceeeEEEc--------CCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence            3489999999        89999999999999999998543 23344556678999999999999999999999999886


Q ss_pred             e-------cccc-ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511          109 L-------LIGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       109 ~-------~~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  180 (351)
                      .       +++| ...|.+++|+      ++...      |++++.||+|+|||...  ......+.     +|.-.|.+
T Consensus       167 pnmnnVk~~~ahh~eaIRdlafS------pnDsk------F~t~SdDg~ikiWdf~~--~kee~vL~-----GHgwdVks  227 (464)
T KOG0284|consen  167 PNMNNVKIIQAHHAEAIRDLAFS------PNDSK------FLTCSDDGTIKIWDFRM--PKEERVLR-----GHGWDVKS  227 (464)
T ss_pred             cchhhhHHhhHhhhhhhheeccC------CCCce------eEEecCCCeEEEEeccC--Cchhheec-----cCCCCcce
Confidence            4       3444 4899999999      55566      99999999999999987  44334444     88899999


Q ss_pred             EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC
Q 048511          181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG  260 (351)
Q Consensus       181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~  260 (351)
                      ++|+|....+++++.|..|++||.+++     .++.++.+|...|..+.|+|++++|+++|.|..+++||+++.+     
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg-----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----  297 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSG-----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----  297 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCc-----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----
Confidence            999999999999999999999999998     7899999999999999999999999999999999999998665     


Q ss_pred             ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                           ++..+++|...++++.|+| -...+|++|+.||.|..|.+.
T Consensus       298 -----El~~~r~Hkkdv~~~~WhP-~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  298 -----ELFTYRGHKKDVTSLTWHP-LNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             -----HHHHhhcchhhheeecccc-ccccceeeccCCCceEEEecc
Confidence                 7888899999999999999 467899999999999999976

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-34  Score=219.09  Aligned_cols=229  Identities=20%  Similarity=0.274  Sum_probs=195.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +++.||++++||....  -.++..++.|..+|.++.|+    +   .+.+.++++|.|++|++|+...++.+        
T Consensus        78 ~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn----~---~~r~~~ltsSWD~TiKLW~~~r~~Sv--------  140 (311)
T KOG0277|consen   78 AASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWN----T---VRRRIFLTSSWDGTIKLWDPNRPNSV--------  140 (311)
T ss_pred             EEecCceEEEeccCCC--CcchhHHHhhhhheEEeccc----c---ccceeEEeeccCCceEeecCCCCcce--------
Confidence            4678999999996652  26888999999999999999    3   56778889999999999999876544        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 .++.+|...|+..+|+|     ...++      ++++|.|+++++||++.. +
T Consensus       141 ---------------------------~Tf~gh~~~Iy~a~~sp-----~~~nl------fas~Sgd~~l~lwdvr~~-g  181 (311)
T KOG0277|consen  141 ---------------------------QTFNGHNSCIYQAAFSP-----HIPNL------FASASGDGTLRLWDVRSP-G  181 (311)
T ss_pred             ---------------------------EeecCCccEEEEEecCC-----CCCCe------EEEccCCceEEEEEecCC-C
Confidence                                       34688999999999999     66778      999999999999999975 4


Q ss_pred             ceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLL  238 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~  238 (351)
                      +.+. +.     .|...|.++.|+. +.+.+++|+.|+.|+.||++.-+    .++..+.+|.-.|+.|+|||.. ..|+
T Consensus       182 k~~~-i~-----ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  182 KFMS-IE-----AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             ceeE-EE-----eccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCceEEEEEecCcchhhHhh
Confidence            4333 44     7788999999998 55688999999999999999876    7789999999999999999964 5789


Q ss_pred             EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +++.|-+++|||...+..         .+.+...|..-+..+.|++ .+..++|+.+-|+.++||+.
T Consensus       252 SasYDmT~riw~~~~~ds---------~~e~~~~HtEFv~g~Dws~-~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  252 SASYDMTVRIWDPERQDS---------AIETVDHHTEFVCGLDWSL-FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccccceEEecccccchh---------hhhhhhccceEEecccccc-ccCceeeecccccceeeecc
Confidence            999999999999986552         4555667888899999998 47889999999999999984

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-33  Score=227.17  Aligned_cols=262  Identities=18%  Similarity=0.218  Sum_probs=224.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|.+..+|++..+.+++...++.+|..+|..+.|+        |+.++|++|+.|..+++||+.++...........
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS--------PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~  312 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS--------PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG  312 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC--------CCCCeEEecCchHheeeccCCcchhhhhcccCcC
Confidence            58899999999988878888899999999999999999        8899999999999999999999988777766666


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe-------cccc-ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.+++|.|||..+++|+.+..+..+..       .++- ...|.+++..      +||+.      +++...|..|++
T Consensus       313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait------~Dgk~------vl~v~~d~~i~l  380 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT------YDGKY------VLLVTVDKKIRL  380 (519)
T ss_pred             CCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc------CCCcE------EEEEecccceee
Confidence            78889999999999999999988866543       1221 2358999999      89999      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEe
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISW  230 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~  230 (351)
                      ++.+.  ......+      ....+|++++.+.+++++++.-.+..+++||++..     ..+..+.+|...  +-.-||
T Consensus       381 ~~~e~--~~dr~li------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  381 YNREA--RVDRGLI------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----KLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             echhh--hhhhccc------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-----hHHHHhhcccccceEEEecc
Confidence            99987  3333222      34567999999999999999999999999999965     568888888753  333456


Q ss_pred             ec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          231 SR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       231 sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      -- +..++++|++|+.|+||+..+++          ++..+.+|...|+|++|+| .+..++|++|+||+||||...
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgk----------ll~~LsGHs~~vNcVswNP-~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGK----------LLAVLSGHSKTVNCVSWNP-ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCc----------eeEeecCCcceeeEEecCC-CCHHHhhccCCCCeEEEecCC
Confidence            53 45789999999999999999988          8888999999999999999 678999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-33  Score=245.79  Aligned_cols=251  Identities=17%  Similarity=0.264  Sum_probs=201.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEe-eecCCeEEec
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLAS-YIEGPVLVAG   98 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~   98 (351)
                      .+..++..-...++|..|+        +++..||.|-.|..|++|.+...+.. ......  ....+.. +.+-. .-..
T Consensus       369 ic~YT~~nt~~~v~ca~fS--------ddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~--~l~~~d~~sad~~-~~~~  436 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFS--------DDSSMLACGFVDSSVRVWSLTPKKLK-KLKDAS--DLSNIDTESADVD-VDML  436 (707)
T ss_pred             EEEEEEEEcCCcceeEeec--------CCcchhhccccccEEEEEecchhhhc-cccchh--hhccccccccchh-hhhc
Confidence            3445555445689999999        88999999999999999999854211 111000  0000000 00000 0000


Q ss_pred             CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511           99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  178 (351)
                      + +..-.....+.||.++|....|+      |+.++      |+++|.|+++|+|.+.+  ..++..++     +|..+|
T Consensus       437 D-~~~~~~~~~L~GH~GPVyg~sFs------Pd~rf------LlScSED~svRLWsl~t--~s~~V~y~-----GH~~PV  496 (707)
T KOG0263|consen  437 D-DDSSGTSRTLYGHSGPVYGCSFS------PDRRF------LLSCSEDSSVRLWSLDT--WSCLVIYK-----GHLAPV  496 (707)
T ss_pred             c-ccCCceeEEeecCCCceeeeeec------ccccc------eeeccCCcceeeeeccc--ceeEEEec-----CCCcce
Confidence            0 01112234588999999999999      78889      99999999999999999  66766666     999999


Q ss_pred             EEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511          179 YGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL  258 (351)
Q Consensus       179 ~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~  258 (351)
                      +.+.|+|.|-++|+++.|++-++|.....     .+++.+.+|-+.|.++.|+|+..|+++||.|.+||+||+.++.   
T Consensus       497 wdV~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---  568 (707)
T KOG0263|consen  497 WDVQFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---  568 (707)
T ss_pred             eeEEecCCceEEEecCCCceeeeeecccC-----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc---
Confidence            99999999999999999999999999885     7899999999999999999999999999999999999999987   


Q ss_pred             cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                             .+..+.+|..+|++++|+|  +|.+|++|++||.|++||+. +..+..+.+|++.
T Consensus       569 -------~VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t  621 (707)
T KOG0263|consen  569 -------SVRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT  621 (707)
T ss_pred             -------EEEEecCCCCceEEEEEcC--CCceEeecccCCcEEEEEcCCCcchhhhhcccCc
Confidence                   6777889999999999999  99999999999999999987 7899999988643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-33  Score=235.23  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=223.4

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +-.+|.|.|||.++ .  ..+..+.-..-+|.+..|.        +..+++++|+.|..||||+.++.+.+.... .+..
T Consensus        31 ~LynG~V~IWnyet-q--tmVksfeV~~~PvRa~kfi--------aRknWiv~GsDD~~IrVfnynt~ekV~~Fe-AH~D   98 (794)
T KOG0276|consen   31 ALYNGDVQIWNYET-Q--TMVKSFEVSEVPVRAAKFI--------ARKNWIVTGSDDMQIRVFNYNTGEKVKTFE-AHSD   98 (794)
T ss_pred             eeecCeeEEEeccc-c--eeeeeeeecccchhhheee--------eccceEEEecCCceEEEEecccceeeEEee-cccc
Confidence            45689999999998 5  5677888888899999999        889999999999999999999988776554 4567


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      -+++++.+|.-.++++++.+..+++|         +++.||+..|.+++|+|     .|.+.      +|+++-|++|++
T Consensus        99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP-----kD~nt------FaS~sLDrTVKV  167 (794)
T KOG0276|consen   99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP-----KDPNT------FASASLDRTVKV  167 (794)
T ss_pred             ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC-----CCccc------eeeeeccccEEE
Confidence            89999999999999999999888765         56899999999999999     78888      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      |.+..  ..+..++.     +|...|.|+++-+.|  .+|++|+.|.+|++||..+.     +|++++.+|...|..++|
T Consensus       168 Wslgs--~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-----~CV~TLeGHt~Nvs~v~f  235 (794)
T KOG0276|consen  168 WSLGS--PHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-----SCVQTLEGHTNNVSFVFF  235 (794)
T ss_pred             EEcCC--CCCceeee-----ccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----HHHHHhhcccccceEEEe
Confidence            99988  66667766     899999999998754  69999999999999999997     789999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      +|.-.++++|++||+++||...+.+          ....+......++|++-.+  +++.++.|.+.|.|.+
T Consensus       236 hp~lpiiisgsEDGTvriWhs~Ty~----------lE~tLn~gleRvW~I~~~k--~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKTYK----------LEKTLNYGLERVWCIAAHK--GDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCccee----------hhhhhhcCCceEEEEeecC--CCCeEEEeccCCcEEE
Confidence            9999999999999999999986665          4445555567799999988  7788999998888765

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=218.55  Aligned_cols=259  Identities=20%  Similarity=0.251  Sum_probs=220.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|++|+|||+.+ |  +...++.||-..|..++++        +...||++++.|+.|+.||++..+.+... .++-
T Consensus       168 tgs~DrtikIwDlat-g--~LkltltGhi~~vr~vavS--------~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHl  235 (460)
T KOG0285|consen  168 TGSADRTIKIWDLAT-G--QLKLTLTGHIETVRGVAVS--------KRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHL  235 (460)
T ss_pred             ecCCCceeEEEEccc-C--eEEEeecchhheeeeeeec--------ccCceEEEecCCCeeEEEechhhhhHHHh-cccc
Confidence            689999999999999 8  4566999999999999999        78889999999999999999987665443 3455


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++..+|.-.+|++++++..+++|.        .+.||..+|..+.+.|     .|+ .      +++||.|++|++
T Consensus       236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-----~dp-q------vit~S~D~tvrl  303 (460)
T KOG0285|consen  236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-----TDP-Q------VITGSHDSTVRL  303 (460)
T ss_pred             ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-----CCC-c------eEEecCCceEEE
Confidence            6889999999999999999999998875        4889999999999996     333 4      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||++.  ++...++.     .|...+.+++.+|....+++++.|. |+-|++..+     ..+..+.+|...|++++.+.
T Consensus       304 WDl~a--gkt~~tlt-----~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-----~f~~nlsgh~~iintl~~ns  370 (460)
T KOG0285|consen  304 WDLRA--GKTMITLT-----HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-----EFLQNLSGHNAIINTLSVNS  370 (460)
T ss_pred             eeecc--CceeEeee-----cccceeeEEecCCchhhhhccCCcc-ceeccCCcc-----chhhccccccceeeeeeecc
Confidence            99999  77777766     8889999999999999999888875 899999887     44667899999999999988


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-----cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-----HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+ ++++|+++|.+..||.+++..       ++.......     ....|.+.+|..  .+..|++|..|.+|++|.-.
T Consensus       371 D~-v~~~G~dng~~~fwdwksg~n-------yQ~~~t~vqpGSl~sEagI~as~fDk--tg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  371 DG-VLVSGGDNGSIMFWDWKSGHN-------YQRGQTIVQPGSLESEAGIFASCFDK--TGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             Cc-eEEEcCCceEEEEEecCcCcc-------cccccccccCCccccccceeEEeecc--cCceEEeccCCcceEEEecc
Confidence            86 788899999999999998863       223322211     224589999998  89999999999999999855

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=247.99  Aligned_cols=238  Identities=22%  Similarity=0.324  Sum_probs=207.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +--.|.|++||.+- +  .++..|..|.++|..+.|+        +.+.+++|||.|-.|++|+..+.+++         
T Consensus        27 slHsG~IQlWDYRM-~--tli~rFdeHdGpVRgv~FH--------~~qplFVSGGDDykIkVWnYk~rrcl---------   86 (1202)
T KOG0292|consen   27 SLHSGVIQLWDYRM-G--TLIDRFDEHDGPVRGVDFH--------PTQPLFVSGGDDYKIKVWNYKTRRCL---------   86 (1202)
T ss_pred             eecCceeeeehhhh-h--hHHhhhhccCCccceeeec--------CCCCeEEecCCccEEEEEecccceeh---------
Confidence            34579999999998 7  6788999999999999999        88999999999999999999877554         


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                .++.||-+.|..+.|+      +.--.      ++++|.|.+|+||+.++  +.
T Consensus        87 --------------------------ftL~GHlDYVRt~~FH------heyPW------IlSASDDQTIrIWNwqs--r~  126 (1202)
T KOG0292|consen   87 --------------------------FTLLGHLDYVRTVFFH------HEYPW------ILSASDDQTIRIWNWQS--RK  126 (1202)
T ss_pred             --------------------------hhhccccceeEEeecc------CCCce------EEEccCCCeEEEEeccC--Cc
Confidence                                      4568999999999999      56667      99999999999999999  88


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc------------------------cccc
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ------------------------PQKV  217 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------------~~~~  217 (351)
                      ++..+.     +|...|+|..|+|....+++++-|.+|++||+..-+.+...                        ..+.
T Consensus       127 ~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  127 CIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             eEEEEe-----cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            888877     99999999999999999999999999999999643222111                        2245


Q ss_pred             cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      +.+|...|+-++|+|.-.+|++|+.|+.|++|.+...+       .| ++....+|...|+++-|+|  ..++|++.|+|
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aW-EvDtcrgH~nnVssvlfhp--~q~lIlSnsED  271 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AW-EVDTCRGHYNNVSSVLFHP--HQDLILSNSED  271 (1202)
T ss_pred             ecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ce-eehhhhcccCCcceEEecC--ccceeEecCCC
Confidence            67899999999999999999999999999999997765       66 4667779999999999999  88999999999


Q ss_pred             CeEEEEecC-chhhhcee
Q 048511          298 KVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       298 g~v~vw~~~-~~~~~~~~  314 (351)
                      +.|||||+. ...++++.
T Consensus       272 ksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  272 KSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             ccEEEEecccccceeeee
Confidence            999999987 66677764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.7e-33  Score=208.63  Aligned_cols=235  Identities=15%  Similarity=0.182  Sum_probs=198.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |++.|.+|++|++.. +  .++.++.+|...|..++.+        .+...|++|+.|+.|.+||+++++..        
T Consensus        34 tcGsdrtvrLWNp~r-g--~liktYsghG~EVlD~~~s--------~Dnskf~s~GgDk~v~vwDV~TGkv~--------   94 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLR-G--ALIKTYSGHGHEVLDAALS--------SDNSKFASCGGDKAVQVWDVNTGKVD--------   94 (307)
T ss_pred             EcCCCceEEeecccc-c--ceeeeecCCCceeeecccc--------ccccccccCCCCceEEEEEcccCeee--------
Confidence            578899999999998 7  6788999999999999999        78889999999999999999998644        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 +.+.+|...|+.++|+      .+...      +++|+.|..+++||.++...
T Consensus        95 ---------------------------Rr~rgH~aqVNtV~fN------eesSV------v~SgsfD~s~r~wDCRS~s~  135 (307)
T KOG0316|consen   95 ---------------------------RRFRGHLAQVNTVRFN------EESSV------VASGSFDSSVRLWDCRSRSF  135 (307)
T ss_pred             ---------------------------eecccccceeeEEEec------CcceE------EEeccccceeEEEEcccCCC
Confidence                                       5678999999999999      77788      99999999999999998766


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ++++.+.     .....|.++..  .+..+++|+.||+++.||++.+.     ......  ..+|++++|+++++..+.+
T Consensus       136 ePiQild-----ea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~-----l~sDy~--g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  136 EPIQILD-----EAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGT-----LSSDYF--GHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             Cccchhh-----hhcCceeEEEe--cccEEEeeccCCcEEEEEeecce-----eehhhc--CCcceeEEecCCCCEEEEe
Confidence            6666554     56677888887  45679999999999999999983     344443  4479999999999999999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccce--eEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDI--NCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +.|+++++.|-.+++          .+..+++|...=  ..++++.  ....+++|++||.|++||+. ...+..+..+.
T Consensus       202 ~l~stlrLlDk~tGk----------lL~sYkGhkn~eykldc~l~q--sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~  269 (307)
T KOG0316|consen  202 SLDSTLRLLDKETGK----------LLKSYKGHKNMEYKLDCCLNQ--SDTHVFSGSEDGKVYFWDLVDETQISKLSVVS  269 (307)
T ss_pred             eccceeeecccchhH----------HHHHhcccccceeeeeeeecc--cceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence            999999999998887          677777886653  3344555  67899999999999999975 77777776655


Q ss_pred             cc
Q 048511          318 FQ  319 (351)
Q Consensus       318 ~~  319 (351)
                      ..
T Consensus       270 ~v  271 (307)
T KOG0316|consen  270 TV  271 (307)
T ss_pred             ce
Confidence            44

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.4e-32  Score=226.04  Aligned_cols=267  Identities=22%  Similarity=0.321  Sum_probs=206.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeee---ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELK---GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      +.+.||+|.+||-.+ ++  .+..+.   +|.+.|.+|+|+        ||+..|+|+|.|.+++|||+.+.........
T Consensus       207 t~gsDgki~iyDGkt-ge--~vg~l~~~~aHkGsIfalsWs--------PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  207 TAGSDGKIYIYDGKT-GE--KVGELEDSDAHKGSIFALSWS--------PDSTQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             EecCCccEEEEcCCC-cc--EEEEecCCCCccccEEEEEEC--------CCCceEEEecCCceEEEEEeeccceEEEeec
Confidence            467899999999998 73  445555   999999999999        8999999999999999999999887766655


Q ss_pred             ccc--cceeeeEeeecCCeEEecCCceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           78 TYR--KEVISLASYIEGPVLVAGSSSYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...  .....+.|.  +..|++-+..+.+.        ....+.||...|+++..+      +++..      |.+|+.|
T Consensus       276 ~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~------~d~~~------i~SgsyD  341 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS------PDGKT------IYSGSYD  341 (603)
T ss_pred             CCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc------CCCCE------EEeeccC
Confidence            443  445555555  33344433333332        456789999999999999      78899      9999999


Q ss_pred             CeEEEEeccCCCcce---------EEEEEecc------------------------------------------------
Q 048511          148 KTMMIWQPEKTTGIW---------MNVVTVGE------------------------------------------------  170 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~---------~~~~~~~~------------------------------------------------  170 (351)
                      |.|.-||..++....         +..+...+                                                
T Consensus       342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            999999987621110         00000000                                                


Q ss_pred             ---------cc--------ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          171 ---------LS--------HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       171 ---------~~--------~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                               +.        .......+++++|+++.+++|+.|+.|++|.+.....   .....+..|.++|+.++||||
T Consensus       422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l---~ee~~~~~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL---KEEAKLLEHRAAITDVAYSPD  498 (603)
T ss_pred             EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc---cceeeeecccCCceEEEECCC
Confidence                     00        0112235678999999999999999999999987643   334456679999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +.+||++...+.+.+||+.+++.         .......|...|.|++|+|  +..++|+|+-|-.|.||+++
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~~---------~~~~w~FHtakI~~~aWsP--~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASREV---------KTNRWAFHTAKINCVAWSP--NNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCce---------ecceeeeeeeeEEEEEeCC--CceEEEeccccceEEEEEcc
Confidence            99999999999999999988872         2333446899999999999  99999999999999999987

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.3e-33  Score=215.69  Aligned_cols=264  Identities=18%  Similarity=0.204  Sum_probs=219.3

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .+...+.+|.+.|+.+.|+        |+|.+|||||.|..|.+|++.......-....+...+..+.+..++..+++++
T Consensus        38 ap~m~l~gh~geI~~~~F~--------P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g  109 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFH--------PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG  109 (338)
T ss_pred             chhhhcCCCcceEEEEEEC--------CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec
Confidence            3455678999999999999        88999999999999999998766655555567788999999999999999999


Q ss_pred             CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc
Q 048511          100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL  171 (351)
Q Consensus       100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  171 (351)
                      .+..+..|.        ..++|.+-|+++.-+  .   ....+      +.+++.|+++++||++.  ...++++     
T Consensus       110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~--r---rg~~l------v~SgsdD~t~kl~D~R~--k~~~~t~-----  171 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS--R---RGPQL------VCSGSDDGTLKLWDIRK--KEAIKTF-----  171 (338)
T ss_pred             CCceEEEEecccceeeehhccccceeeecCcc--c---cCCeE------EEecCCCceEEEEeecc--cchhhcc-----
Confidence            998886654        477889999988844  2   22334      89999999999999998  5555544     


Q ss_pred             cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                       ....+++++.|..++..+.+|+.|+.|++||++.+     ...+.+.+|...|+.+..+|+|.++.+-+.|.++++||+
T Consensus       172 -~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  172 -ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             -ccceeEEEEEecccccceeeccccCceeeeccccC-----cceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence             24557899999999999999999999999999887     568999999999999999999999999999999999999


Q ss_pred             CCccccccCccceEEecccccccc----ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccch
Q 048511          252 WKNVASLMGENSWHEVARPQVHGH----DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESSF  323 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~  323 (351)
                      +.....      ...+..+++|.+    ....++|+|  ++..+.+|+.|..+++||.. ..++..+.+|.+.-..-
T Consensus       246 rp~~p~------~R~v~if~g~~hnfeknlL~cswsp--~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~  314 (338)
T KOG0265|consen  246 RPFAPS------QRCVKIFQGHIHNFEKNLLKCSWSP--NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV  314 (338)
T ss_pred             cccCCC------CceEEEeecchhhhhhhcceeeccC--CCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence            865422      123555555543    256778999  99999999999999999987 58888999988765554

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-32  Score=235.79  Aligned_cols=239  Identities=19%  Similarity=0.249  Sum_probs=202.8

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      +.=|.+-||++.. .  ..+...++|...+++++++        |||.++|||+.||.|+|||...+.+.          
T Consensus       327 ~klgQLlVweWqs-E--sYVlKQQgH~~~i~~l~YS--------pDgq~iaTG~eDgKVKvWn~~SgfC~----------  385 (893)
T KOG0291|consen  327 SKLGQLLVWEWQS-E--SYVLKQQGHSDRITSLAYS--------PDGQLIATGAEDGKVKVWNTQSGFCF----------  385 (893)
T ss_pred             CccceEEEEEeec-c--ceeeeccccccceeeEEEC--------CCCcEEEeccCCCcEEEEeccCceEE----------
Confidence            3347899999998 5  3456788999999999999        89999999999999999999887544          


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW  162 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  162 (351)
                                               .++..|+..|+.+.|+      ..++.      +++++-||+|+.||+..  ...
T Consensus       386 -------------------------vTFteHts~Vt~v~f~------~~g~~------llssSLDGtVRAwDlkR--YrN  426 (893)
T KOG0291|consen  386 -------------------------VTFTEHTSGVTAVQFT------ARGNV------LLSSSLDGTVRAWDLKR--YRN  426 (893)
T ss_pred             -------------------------EEeccCCCceEEEEEE------ecCCE------EEEeecCCeEEeeeecc--cce
Confidence                                     4567799999999999      89999      99999999999999998  777


Q ss_pred             EEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511          163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      .+++..    .......|++..|.|..+.+|+.|. .|.+|++.++     +.+-.+.+|+++|.+++|+|.+..|+++|
T Consensus       427 fRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-----qllDiLsGHEgPVs~l~f~~~~~~LaS~S  497 (893)
T KOG0291|consen  427 FRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-----QLLDILSGHEGPVSGLSFSPDGSLLASGS  497 (893)
T ss_pred             eeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-----eeeehhcCCCCcceeeEEccccCeEEecc
Confidence            777762    3344678999999999999999885 6999999999     67899999999999999999999999999


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccc
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQE  320 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~  320 (351)
                      .|++|++||+-....         .+..+ .+.+.+..++|.|  +|.-|+++.-||.|.+||.. +....++.+.....
T Consensus       498 WDkTVRiW~if~s~~---------~vEtl-~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~  565 (893)
T KOG0291|consen  498 WDKTVRIWDIFSSSG---------TVETL-EIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS  565 (893)
T ss_pred             ccceEEEEEeeccCc---------eeeeE-eeccceeEEEEcC--CCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence            999999999976641         22222 4567799999999  99999999999999999987 65666666655444


Q ss_pred             cc
Q 048511          321 SS  322 (351)
Q Consensus       321 ~~  322 (351)
                      ..
T Consensus       566 ~g  567 (893)
T KOG0291|consen  566 GG  567 (893)
T ss_pred             cc
Confidence            33

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-31  Score=223.20  Aligned_cols=256  Identities=27%  Similarity=0.379  Sum_probs=213.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++|+... ++  ....+..|...+..+.|.        +++++|++++.||.|++|++...+...... .+.
T Consensus        26 ~~~~~g~i~i~~~~~-~~--~~~~~~~~~~~i~~~~~~--------~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~   93 (289)
T cd00200          26 TGSGDGTIKVWDLET-GE--LLRTLKGHTGPVRDVAAS--------ADGTYLASGSSDKTIRLWDLETGECVRTLT-GHT   93 (289)
T ss_pred             EeecCcEEEEEEeeC-CC--cEEEEecCCcceeEEEEC--------CCCCEEEEEcCCCeEEEEEcCcccceEEEe-ccC
Confidence            366799999999988 53  456778899999999999        778899999999999999999765544433 334


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++.+++++.+++++..++.+.++.        .+..|...+.++.|+      +++.+      +++++.|+.|++
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~~~~i~i  161 (289)
T cd00200          94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS------PDGTF------VASSSQDGTIKL  161 (289)
T ss_pred             CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc------CcCCE------EEEEcCCCcEEE
Confidence            5788999999988888888777765544        345688899999999      56677      888877999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||++.  +.....+.     .+...+.+++|+|+++.+++++.++.|++||++..     ..+..+..|...+.+++|+|
T Consensus       162 ~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~  229 (289)
T cd00200         162 WDLRT--GKCVATLT-----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-----KCLGTLRGHENGVNSVAFSP  229 (289)
T ss_pred             EEccc--cccceeEe-----cCccccceEEECCCcCEEEEecCCCcEEEEECCCC-----ceecchhhcCCceEEEEEcC
Confidence            99987  55555554     56678999999999999999999999999999875     45667767888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      ++.++++++.|+.|++||+....          ....+..|...|.+++|++  ++.+|++++.|+.|++|+
T Consensus       230 ~~~~~~~~~~~~~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         230 DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSP--DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCCCcEEEEEcCCce----------eEEEccccCCcEEEEEECC--CCCEEEEecCCCeEEecC
Confidence            98888888889999999998765          4444557888899999999  889999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=237.15  Aligned_cols=253  Identities=27%  Similarity=0.373  Sum_probs=212.5

Q ss_pred             EEeeeec-CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc--ccceeecccccceeeeEeeecCCeEEec
Q 048511           22 ACELKGH-TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG--SSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        22 ~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      ...+.+| ...|.++.|+        ++|+.|++++.|+.+++|+.....  ..... ..+...+..++|++++.+++.+
T Consensus       151 ~~~~~~~~~~sv~~~~fs--------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~  221 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFS--------PDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSG  221 (456)
T ss_pred             eeeecccccCceEEEEEc--------CCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEe
Confidence            3445444 7799999999        889999999999999999996665  33333 5567789999999999999999


Q ss_pred             CCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511           99 SSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus        99 ~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      ..+..+++|.         ++.+|...|++++|+      +++++      +++|+.|++|+|||+++  +++...+.  
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~------p~g~~------i~Sgs~D~tvriWd~~~--~~~~~~l~--  285 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS------PDGNL------LVSGSDDGTVRIWDVRT--GECVRKLK--  285 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecCCCCceEEEEec------CCCCE------EEEecCCCcEEEEeccC--CeEEEeee--
Confidence            9999886654         577999999999999      67788      99999999999999999  88888887  


Q ss_pred             cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCEEEEEeCCCcEE
Q 048511          170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                         .|...|.+++|++++++|++++.|+.|++||+.++...   +...+.++...  ++.++|+|++.+|++++.|+.++
T Consensus       286 ---~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  286 ---GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             ---ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence               89999999999999999999999999999999997421   35566666554  99999999999999999999999


Q ss_pred             EEcCCCccccccCccceEEeccccccccc---eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHD---INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +||+....          .+....+|...   +.+...++  ++.++++|+.|+.|++|++. +..++.+++|.
T Consensus       360 ~w~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~  421 (456)
T KOG0266|consen  360 LWDLRSGK----------SVGTYTGHSNLVRCIFSPTLST--GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS  421 (456)
T ss_pred             EEEccCCc----------ceeeecccCCcceeEecccccC--CCCeEEEEeCCceEEEEeCCccchhhhhcCCC
Confidence            99998887          44444455543   33333444  89999999999999999988 88888888884

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.1e-32  Score=239.86  Aligned_cols=262  Identities=24%  Similarity=0.333  Sum_probs=220.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.|+.|++|+... .+......+.+|...|.+++|+        +++.++++++.|++|+|||+............+..
T Consensus       177 ~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs--------~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~  247 (456)
T KOG0266|consen  177 ASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFS--------PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST  247 (456)
T ss_pred             ccCCCcEEEeeccc-ccchhhccccccccceeeeEEC--------CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC
Confidence            67899999999976 4323556778999999999999        88999999999999999999555444445557888


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      .+.+++|+++++.+++|+.+..+++|.        .+.+|.+.|++++|+      +++++      |++++.|+.|+||
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~------~d~~~------l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS------PDGNL------LVSASYDGTIRVW  315 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC------CCCCE------EEEcCCCccEEEE
Confidence            999999999999999999999997765        478899999999999      89999      9999999999999


Q ss_pred             eccCCCcc--eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc---EEEE
Q 048511          154 QPEKTTGI--WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA---VMDI  228 (351)
Q Consensus       154 d~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---v~~v  228 (351)
                      |+.+  +.  +...+.-  ..... .++++.|+|++.++++++.|+.+++||+...     .+...+.+|...   +.+.
T Consensus       316 d~~~--~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-----~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  316 DLET--GSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-----KSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             ECCC--CceeeeecccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCC-----cceeeecccCCcceeEecc
Confidence            9998  55  3333331  11222 6999999999999999999999999999987     457777777664   4445


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEec--CCCeEEEEec
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGA--DEKVARVFEA  305 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~  305 (351)
                      ..++.+.++++|+.|+.|++||+.++.          .+..+.+| ...+..+++++  ...++++++  .|+.+++|..
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~----------~~~~l~~h~~~~~~~~~~~~--~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGG----------ILQRLEGHSKAAVSDLSSHP--TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccc----------hhhhhcCCCCCceeccccCC--CcCeeeecCcCCCceEEEecC
Confidence            567899999999999999999998866          67777888 77899999999  889999988  7999999986


Q ss_pred             C
Q 048511          306 P  306 (351)
Q Consensus       306 ~  306 (351)
                      +
T Consensus       454 ~  454 (456)
T KOG0266|consen  454 D  454 (456)
T ss_pred             C
Confidence            4

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3e-31  Score=206.72  Aligned_cols=260  Identities=18%  Similarity=0.210  Sum_probs=213.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|..|.+|++..  ..+-...+++|.++|..+.|.        .++..|+++|.|.+|+.||+++++........ .
T Consensus        64 SgG~Dr~I~LWnv~g--dceN~~~lkgHsgAVM~l~~~--------~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h-~  132 (338)
T KOG0265|consen   64 SGGSDRAIVLWNVYG--DCENFWVLKGHSGAVMELHGM--------RDGSHILSCGTDKTVRGWDAETGKRIRKHKGH-T  132 (338)
T ss_pred             ecCCcceEEEEeccc--cccceeeeccccceeEeeeec--------cCCCEEEEecCCceEEEEecccceeeehhccc-c
Confidence            689999999999876  235677888999999999999        89999999999999999999999887665533 2


Q ss_pred             cceeeeEeeecCC-eEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGP-VLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      .-+.++..+.-|. .+.++..++.++++..-+       ....+++++.|.      ..+..      +.+|+-|+.|++
T Consensus       133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~------d~s~q------v~sggIdn~ikv  200 (338)
T KOG0265|consen  133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK------DTSDQ------VISGGIDNDIKV  200 (338)
T ss_pred             ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec------ccccc------eeeccccCceee
Confidence            2334444333444 555688899998887542       235578999999      77888      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc----ccEEEE
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF----AAVMDI  228 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~----~~v~~v  228 (351)
                      ||++.  ......+.     +|...|+.+..+|+|.++.+-+.|.++++||++.--.. ..++..+.+|.    ......
T Consensus       201 Wd~r~--~d~~~~ls-----Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  201 WDLRK--NDGLYTLS-----GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             ecccc--CcceEEee-----cccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEEEeecchhhhhhhccee
Confidence            99998  66666666     99999999999999999999999999999999753211 13455666653    235667


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      +|+|++..+.+|+.|+.+++||.....          .+..+.+|...|++++|+|  ...+|.+++.|.+|++=
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~----------~lyklpGh~gsvn~~~Fhp--~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRR----------ILYKLPGHYGSVNEVDFHP--TEPIILSCSSDKTIYLG  335 (338)
T ss_pred             eccCCCCccccccccceEEEeeccccc----------EEEEcCCcceeEEEeeecC--CCcEEEEeccCceeEee
Confidence            999999999999999999999997766          6777889999999999999  89999999999999763

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.7e-30  Score=230.94  Aligned_cols=240  Identities=18%  Similarity=0.267  Sum_probs=176.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |+.++.|++|+... .  ..+..+.+|.+.|.+++|+        |+ +.+||||+.|++|++||+.+.........   
T Consensus        50 GG~~gvI~L~~~~r-~--~~v~~L~gH~~~V~~lafs--------P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~---  115 (568)
T PTZ00420         50 GGLIGAIRLENQMR-K--PPVIKLKGHTSSILDLQFN--------PCFSEILASGSEDLTIRVWEIPHNDESVKEIK---  115 (568)
T ss_pred             CCceeEEEeeecCC-C--ceEEEEcCCCCCEEEEEEc--------CCCCCEEEEEeCCCeEEEEECCCCCccccccc---
Confidence            67789999999876 4  4677899999999999999        54 78999999999999999976432110000   


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                              .....+.+|...|.+++|+      |++..     +|++++.|++|+|||++.  +
T Consensus       116 ------------------------~p~~~L~gH~~~V~sVaf~------P~g~~-----iLaSgS~DgtIrIWDl~t--g  158 (568)
T PTZ00420        116 ------------------------DPQCILKGHKKKISIIDWN------PMNYY-----IMCSSGFDSFVNIWDIEN--E  158 (568)
T ss_pred             ------------------------cceEEeecCCCcEEEEEEC------CCCCe-----EEEEEeCCCeEEEEECCC--C
Confidence                                    1123457899999999999      45543     167999999999999998  5


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE-----EEeecCCC
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-----ISWSRSSD  235 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-----v~~sp~~~  235 (351)
                      .....+.      +...|.+++|+|+|.+|++++.|+.|++||++++     ..+.++.+|.+.+..     ..|++++.
T Consensus       159 ~~~~~i~------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-----~~i~tl~gH~g~~~s~~v~~~~fs~d~~  227 (568)
T PTZ00420        159 KRAFQIN------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-----EIASSFHIHDGGKNTKNIWIDGLGGDDN  227 (568)
T ss_pred             cEEEEEe------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-----cEEEEEecccCCceeEEEEeeeEcCCCC
Confidence            5444432      3457999999999999999999999999999987     456778888876433     23458889


Q ss_pred             EEEEEeCCC----cEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          236 YLLSVSHDQ----TTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       236 ~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      +|++++.|+    .|+|||+++...         ++...  ..+...+... |.+ +++.++++|+.|+.|++|++....
T Consensus       228 ~IlTtG~d~~~~R~VkLWDlr~~~~---------pl~~~~ld~~~~~L~p~-~D~-~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        228 YILSTGFSKNNMREMKLWDLKNTTS---------ALVTMSIDNASAPLIPH-YDE-STGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EEEEEEcCCCCccEEEEEECCCCCC---------ceEEEEecCCccceEEe-eeC-CCCCEEEEEECCCeEEEEEccCCc
Confidence            999888764    799999986441         22222  1222222222 333 368899999999999999987444


Q ss_pred             hhcee
Q 048511          310 LKTLN  314 (351)
Q Consensus       310 ~~~~~  314 (351)
                      +..+.
T Consensus       297 ~~~l~  301 (568)
T PTZ00420        297 IRKVN  301 (568)
T ss_pred             EEeec
Confidence            44443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.3e-31  Score=226.80  Aligned_cols=280  Identities=19%  Similarity=0.216  Sum_probs=227.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cc-----
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SA-----   73 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~-----   73 (351)
                      +|+.|-++++|.++.... .....+.+|.+.|-+.-|.        .+...++|.+.||.+.+|.......  ..     
T Consensus       162 ~gsrD~s~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~--------~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~  232 (893)
T KOG0291|consen  162 TGSRDLSARLFGVDGNKN-LFTYALNGHKDYVVACFFG--------ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDE  232 (893)
T ss_pred             eccccceEEEEEeccccc-cceEeccCCCcceEEEEec--------cCcceEEEEecCceEEEEEecCCCcccccccccc
Confidence            589999999999987333 4467889999999999999        8888999999999999998871100  00     


Q ss_pred             -------------------------ee-ecccccceeeeEeeecCCeEEecCCceeE--------EEEEeccccccceEE
Q 048511           74 -------------------------NT-QSTYRKEVISLASYIEGPVLVAGSSSYQV--------SVESLLIGHEDWVYS  119 (351)
Q Consensus        74 -------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~h~~~v~~  119 (351)
                                               .. .......+.+.+|++.-..|+++-..+.+        .+++.+.-...+|..
T Consensus       233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t  312 (893)
T KOG0291|consen  233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT  312 (893)
T ss_pred             cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence                                     00 00112567788899999999998877765        344556556678999


Q ss_pred             EEecCCCCCCCCCcccCCCceeEEeecC-CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCe
Q 048511          120 VQWEPPSTAPSDGVSCQQPSSILSASMD-KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA  198 (351)
Q Consensus       120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~  198 (351)
                      +.|+      ..|..      ||.|+.. |++.||+.+.  ...+...+     +|...+.+++++|||+++++|+.||.
T Consensus       313 ~~~N------~tGDW------iA~g~~klgQLlVweWqs--EsYVlKQQ-----gH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  313 VSFN------STGDW------IAFGCSKLGQLLVWEWQS--ESYVLKQQ-----GHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             EEec------ccCCE------EEEcCCccceEEEEEeec--cceeeecc-----ccccceeeEEECCCCcEEEeccCCCc
Confidence            9999      78888      8888764 8999999998  66665555     89999999999999999999999999


Q ss_pred             EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------------
Q 048511          199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-------------------  259 (351)
Q Consensus       199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------  259 (351)
                      |+|||...+     .|..++..|.+.|+.++|+..++.+++.+.||+|+.||+.....-.+                   
T Consensus       374 VKvWn~~Sg-----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe  448 (893)
T KOG0291|consen  374 VKVWNTQSG-----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE  448 (893)
T ss_pred             EEEEeccCc-----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence            999999987     78999999999999999999999999999999999999876543221                   


Q ss_pred             ---------------CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhceee
Q 048511          260 ---------------GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLNH  315 (351)
Q Consensus       260 ---------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~  315 (351)
                                     ..++.+.+..+.+|.++|.+++|+|  .+..|+++|.|.+||+||+=  ....++++.
T Consensus       449 lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~--~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  449 LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP--DGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc--ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence                           2334456667789999999999999  89999999999999999964  335555554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.6e-32  Score=216.30  Aligned_cols=267  Identities=16%  Similarity=0.279  Sum_probs=203.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|+|||+.. .  .+..++++|.+.|..|++.        .  ..++|+|.|.+|+.|.+... ....+..  .
T Consensus        84 SGs~DG~VkiWnlsq-R--~~~~~f~AH~G~V~Gi~v~--------~--~~~~tvgdDKtvK~wk~~~~-p~~tilg--~  147 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQ-R--ECIRTFKAHEGLVRGICVT--------Q--TSFFTVGDDKTVKQWKIDGP-PLHTILG--K  147 (433)
T ss_pred             ccccCceEEEEehhh-h--hhhheeecccCceeeEEec--------c--cceEEecCCcceeeeeccCC-cceeeec--c
Confidence            689999999999988 4  5788999999999999998        4  68999999999999998763 2221111  2


Q ss_pred             cceeeeEeeecCCeEEecCCceeE------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQV------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      .....+.-+..+..+++++....+      ...+.+.-..+.|.++.|+|     -...+      |++++.|+.|.+||
T Consensus       148 s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp-----vETsI------Las~~sDrsIvLyD  216 (433)
T KOG0268|consen  148 SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP-----VETSI------LASCASDRSIVLYD  216 (433)
T ss_pred             ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC-----Ccchh------eeeeccCCceEEEe
Confidence            233344444455666666654433      12333444456789999997     44556      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                      ++.  ..++..+.+      ...-..|+|+|..-.+.+++.|..++.||++.-+    .++....+|.+.|.+|.|||.|
T Consensus       217 ~R~--~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----~p~~v~~dhvsAV~dVdfsptG  284 (433)
T KOG0268|consen  217 LRQ--ASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----RPLNVHKDHVSAVMDVDFSPTG  284 (433)
T ss_pred             ccc--CCccceeee------eccccceecCccccceeeccccccceehhhhhhc----ccchhhcccceeEEEeccCCCc
Confidence            999  666666542      2345679999988888999999999999998875    6788899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      +-|++||.|.+|+||..+.+...     ...-..++    ..|.|+.|+.  |.+++++||+|+.||+|... ...+..+
T Consensus       285 ~EfvsgsyDksIRIf~~~~~~SR-----diYhtkRM----q~V~~Vk~S~--Dskyi~SGSdd~nvRlWka~Aseklgv~  353 (433)
T KOG0268|consen  285 QEFVSGSYDKSIRIFPVNHGHSR-----DIYHTKRM----QHVFCVKYSM--DSKYIISGSDDGNVRLWKAKASEKLGVI  353 (433)
T ss_pred             chhccccccceEEEeecCCCcch-----hhhhHhhh----heeeEEEEec--cccEEEecCCCcceeeeecchhhhcCCC
Confidence            99999999999999999877621     11111111    2389999999  99999999999999999976 4444444


Q ss_pred             eecc
Q 048511          314 NHAT  317 (351)
Q Consensus       314 ~~~~  317 (351)
                      ....
T Consensus       354 t~rE  357 (433)
T KOG0268|consen  354 TPRE  357 (433)
T ss_pred             ChhH
Confidence            4333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-31  Score=202.07  Aligned_cols=241  Identities=18%  Similarity=0.332  Sum_probs=194.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |++.|++|+|+.++..+....+.+|.||.++|+.++|.+|      .-|.+||+++.||.|.||.-..++..+..     
T Consensus        28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP------k~G~iLAScsYDgkVIiWke~~g~w~k~~-----   96 (299)
T KOG1332|consen   28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP------KFGTILASCSYDGKVIIWKEENGRWTKAY-----   96 (299)
T ss_pred             eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc------ccCcEeeEeecCceEEEEecCCCchhhhh-----
Confidence            6899999999999986665788999999999999999843      46899999999999999998877443322     


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                  ....|...|++++|.|+.    .|-.      |+.++.||.|.|.+.+...+
T Consensus        97 ----------------------------e~~~h~~SVNsV~waphe----ygl~------LacasSDG~vsvl~~~~~g~  138 (299)
T KOG1332|consen   97 ----------------------------EHAAHSASVNSVAWAPHE----YGLL------LACASSDGKVSVLTYDSSGG  138 (299)
T ss_pred             ----------------------------hhhhhcccceeecccccc----cceE------EEEeeCCCcEEEEEEcCCCC
Confidence                                        246799999999999853    4556      99999999999999987422


Q ss_pred             ceEEEEEeccccccccceEEEEEcCC---C-----------CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPD---G-----------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~---~-----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~  226 (351)
                      -....+    ...|...+.+++|.|.   |           +.|++|+.|..|+||+....+   +....++.+|.+.|+
T Consensus       139 w~t~ki----~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  139 WTTSKI----VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WKLERTLEGHKDWVR  211 (299)
T ss_pred             ccchhh----hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hhhhhhhhhcchhhh
Confidence            222222    2378889999999985   4           569999999999999998863   566778999999999


Q ss_pred             EEEeecCC----CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          227 DISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       227 ~v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .++|.|.-    .+|+++++||++.||-.....      ..|+.. .+......++.++|+.  .|++|+.++.|..|.+
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~------e~wk~t-ll~~f~~~~w~vSWS~--sGn~LaVs~GdNkvtl  282 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY------EPWKKT-LLEEFPDVVWRVSWSL--SGNILAVSGGDNKVTL  282 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCcc------Cccccc-ccccCCcceEEEEEec--cccEEEEecCCcEEEE
Confidence            99999953    579999999999999887332      234322 2222345699999999  8999999999999999


Q ss_pred             EecC
Q 048511          303 FEAP  306 (351)
Q Consensus       303 w~~~  306 (351)
                      |..+
T Consensus       283 wke~  286 (299)
T KOG1332|consen  283 WKEN  286 (299)
T ss_pred             EEeC
Confidence            9855

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-31  Score=200.41  Aligned_cols=223  Identities=15%  Similarity=0.219  Sum_probs=197.3

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      +....+..|.++|.++.|+        .+|+|.+||+.|++|++|+...+..                            
T Consensus         8 kr~~~l~~~qgaV~avryN--------~dGnY~ltcGsdrtvrLWNp~rg~l----------------------------   51 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYN--------VDGNYCLTCGSDRTVRLWNPLRGAL----------------------------   51 (307)
T ss_pred             hhceeecccccceEEEEEc--------cCCCEEEEcCCCceEEeecccccce----------------------------
Confidence            3567788999999999999        8999999999999999999987643                            


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                             ++++.+|...|..++.+      .|...      |++|+.|+.|.+||+.+  ++..+.+.     +|...|.
T Consensus        52 -------iktYsghG~EVlD~~~s------~Dnsk------f~s~GgDk~v~vwDV~T--Gkv~Rr~r-----gH~aqVN  105 (307)
T KOG0316|consen   52 -------IKTYSGHGHEVLDAALS------SDNSK------FASCGGDKAVQVWDVNT--GKVDRRFR-----GHLAQVN  105 (307)
T ss_pred             -------eeeecCCCceeeecccc------ccccc------cccCCCCceEEEEEccc--Ceeeeecc-----cccceee
Confidence                   36678899999999999      77788      99999999999999999  88888887     9999999


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      .+.|+.+...+++|+.|.++++||.+....   +|++.+......|.++..+  +..|++|+.||++|.||++.+.    
T Consensus       106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~----  176 (307)
T KOG0316|consen  106 TVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT----  176 (307)
T ss_pred             EEEecCcceEEEeccccceeEEEEcccCCC---CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----
Confidence            999999999999999999999999998764   7888888888899999886  5679999999999999999887    


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccccccch
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQESSF  323 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~  323 (351)
                            .....  .+++|+|++|++  +++..++++-|+++|+-|-+ |++++.+++|..++-+-
T Consensus       177 ------l~sDy--~g~pit~vs~s~--d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl  231 (307)
T KOG0316|consen  177 ------LSSDY--FGHPITSVSFSK--DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL  231 (307)
T ss_pred             ------eehhh--cCCcceeEEecC--CCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence                  33333  456799999999  99999999999999999976 99999999987665543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-31  Score=227.58  Aligned_cols=240  Identities=17%  Similarity=0.260  Sum_probs=208.8

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      +.+..|+..|.++.|+        |...+++++-..|.|.|||.++...+..+.. ...++++..|-.--+.+++|+.++
T Consensus         7 rk~~~rSdRVKsVd~H--------PtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~   77 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFH--------PTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDM   77 (794)
T ss_pred             hHhhccCCceeeeecC--------CCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCc
Confidence            3556689999999999        7888999999999999999998776654432 345788888888899999999999


Q ss_pred             eEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511          103 QVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       103 ~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                      .+++        +..+..|.+.|.|++.+|      ...+      ++++|.|-+|++||.+.. -.+.+++.     +|
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHP------t~P~------vLtsSDDm~iKlW~we~~-wa~~qtfe-----GH  139 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHP------TLPY------VLTSSDDMTIKLWDWENE-WACEQTFE-----GH  139 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeecC------CCCe------EEecCCccEEEEeeccCc-eeeeeEEc-----Cc
Confidence            9866        456889999999999995      4446      999999999999999851 23334444     89


Q ss_pred             ccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC--CEEEEEeCCCcEEEEcC
Q 048511          175 ALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS--DYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       175 ~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~s~~~dg~i~vwd~  251 (351)
                      ...|++++|+| |.+.+++++-|++|++|.+...     .+..++++|...|++++|-+.|  .+|++|+.|.+|+|||.
T Consensus       140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             ceEEEEEEecCCCccceeeeeccccEEEEEcCCC-----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            99999999999 5679999999999999999887     6789999999999999998854  79999999999999999


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++..          ++.++.+|...|.++.|+|  .-.+|++||+||+||||+..
T Consensus       215 Qtk~----------CV~TLeGHt~Nvs~v~fhp--~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  215 QTKS----------CVQTLEGHTNNVSFVFFHP--ELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             chHH----------HHHHhhcccccceEEEecC--CCcEEEEecCCccEEEecCc
Confidence            9988          7888999999999999999  88999999999999999965

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=202.95  Aligned_cols=244  Identities=16%  Similarity=0.234  Sum_probs=199.0

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ..|++.|.++...+.+.....+.- .+.+..++|+    +   ...+.+++++.||++++||+.....            
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d~-~D~LfdV~Ws----e---~~e~~~~~a~GDGSLrl~d~~~~s~------------   95 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYDT-EDGLFDVAWS----E---NHENQVIAASGDGSLRLFDLTMPSK------------   95 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeeec-ccceeEeeec----C---CCcceEEEEecCceEEEeccCCCCc------------
Confidence            368999999964355555566653 6789999999    3   3467888999999999999543321            


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                            .+..++.|...|.++.|++     .+...      ++++|.|++|++|+...  +..+
T Consensus        96 ----------------------Pi~~~kEH~~EV~Svdwn~-----~~r~~------~ltsSWD~TiKLW~~~r--~~Sv  140 (311)
T KOG0277|consen   96 ----------------------PIHKFKEHKREVYSVDWNT-----VRRRI------FLTSSWDGTIKLWDPNR--PNSV  140 (311)
T ss_pred             ----------------------chhHHHhhhhheEEecccc-----cccee------EEeeccCCceEeecCCC--Ccce
Confidence                                  2245788999999999997     56666      89999999999999988  6777


Q ss_pred             EEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEe
Q 048511          164 NVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVS  241 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~  241 (351)
                      .++.     +|..-|+...|+| ..+.+++++.|+.+++||++...    +.. .+..|...|.++.|+. +...|+||+
T Consensus       141 ~Tf~-----gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  141 QTFN-----GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFM-SIEAHNSEILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             Eeec-----CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----cee-EEEeccceeEeecccccCCcEEEecC
Confidence            7776     8999999999999 56799999999999999998763    223 3788999999999997 567789999


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhceeecccc
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLNHATFQ  319 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~  319 (351)
                      .|+.|++||+++.+         .++..+.+|+..|..+.|+| ....+|++++.|-++||||..  ...+++...|+..
T Consensus       211 vd~~vr~wDir~~r---------~pl~eL~gh~~AVRkvk~Sp-h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF  280 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLR---------TPLFELNGHGLAVRKVKFSP-HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF  280 (311)
T ss_pred             CCceEEEEehhhcc---------ccceeecCCceEEEEEecCc-chhhHhhhccccceEEecccccchhhhhhhhccceE
Confidence            99999999999877         26677789999999999999 457899999999999999975  5567777777754


Q ss_pred             ccc
Q 048511          320 ESS  322 (351)
Q Consensus       320 ~~~  322 (351)
                      ..+
T Consensus       281 v~g  283 (311)
T KOG0277|consen  281 VCG  283 (311)
T ss_pred             Eec
Confidence            443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1e-30  Score=217.90  Aligned_cols=267  Identities=15%  Similarity=0.206  Sum_probs=211.7

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~   83 (351)
                      ...|.+-+++. .  .....+..|...++-..|+        |.|.|+|+|...|+|||||....+. +.........++
T Consensus        38 Gksv~ir~i~~-~--~~~~iYtEH~~~vtVAkyS--------PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I  106 (603)
T KOG0318|consen   38 GKSVIIRNIDN-P--ASVDIYTEHAHQVTVAKYS--------PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPI  106 (603)
T ss_pred             CCEEEEEECCC-c--cceeeeccccceeEEEEeC--------CCceEEeecCCcCcEEEEeccCcceeeeeeeeeccccc
Confidence            34667777776 3  4566788999999999999        8899999999999999999987443 444455557788


Q ss_pred             eeeEeeecCCeEEecC-Ccee---EEEE------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           84 ISLASYIEGPVLVAGS-SSYQ---VSVE------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~-~~~~---~~~~------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+.|+.+++.+++.+ ....   +-.+      -.+.||...|+++.|-|..           |.++++|+.|++|.+|
T Consensus       107 ~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR-----------PfRi~T~sdDn~v~ff  175 (603)
T KOG0318|consen  107 KDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR-----------PFRIATGSDDNTVAFF  175 (603)
T ss_pred             ccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC-----------ceEEEeccCCCeEEEe
Confidence            9999999999888743 2222   2222      2478999999999999632           2249999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccEEEEEe
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAVMDISW  230 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v~~v~~  230 (351)
                      +-..  -+...++     ..|...|.++.|+|||..+++++.||++.+||-.+++     .+..+.   +|.+.|.+++|
T Consensus       176 eGPP--FKFk~s~-----r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-----~vg~l~~~~aHkGsIfalsW  243 (603)
T KOG0318|consen  176 EGPP--FKFKSSF-----REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-----KVGELEDSDAHKGSIFALSW  243 (603)
T ss_pred             eCCC--eeeeecc-----cccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-----EEEEecCCCCccccEEEEEE
Confidence            8554  2222222     3788899999999999999999999999999998884     355555   89999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCcccccc---------------------------------CccceEEeccccccccce
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLM---------------------------------GENSWHEVARPQVHGHDI  277 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~i  277 (351)
                      +||+..|+|++.|.+++|||+.+.+...+                                 .......+....+|...|
T Consensus       244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI  323 (603)
T ss_pred             CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence            99999999999999999999988765443                                 001111334566899999


Q ss_pred             eEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          278 NCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       278 ~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ++++.++  ++.+|.+|+.||.|.-|+...
T Consensus       324 TaLtv~~--d~~~i~SgsyDG~I~~W~~~~  351 (603)
T KOG0318|consen  324 TALTVSP--DGKTIYSGSYDGHINSWDSGS  351 (603)
T ss_pred             eEEEEcC--CCCEEEeeccCceEEEEecCC
Confidence            9999999  899999999999999999873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=1.3e-30  Score=213.88  Aligned_cols=254  Identities=17%  Similarity=0.236  Sum_probs=198.5

Q ss_pred             CCCCCceEEEEEccCCC-------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc
Q 048511            1 MGGLDNKIHLYRGQRTG-------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA   73 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~   73 (351)
                      +++..+.|+|||.....       ++.+-..+.+|.+.=++|.|+    +   .....|++++.|++|++||+.......
T Consensus       142 t~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn----~---~~~g~Lls~~~d~~i~lwdi~~~~~~~  214 (422)
T KOG0264|consen  142 TKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN----R---QQEGTLLSGSDDHTICLWDINAESKED  214 (422)
T ss_pred             ecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc----c---ccceeEeeccCCCcEEEEeccccccCC
Confidence            45778899999987621       233344889999988999999    3   345689999999999999998654321


Q ss_pred             eeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      .                            .+.....+.+|.+.|..++|+|     .+..+      |++++.|+.+.||
T Consensus       215 ~----------------------------~~~p~~~~~~h~~~VeDV~~h~-----~h~~l------F~sv~dd~~L~iw  255 (422)
T KOG0264|consen  215 K----------------------------VVDPKTIFSGHEDVVEDVAWHP-----LHEDL------FGSVGDDGKLMIW  255 (422)
T ss_pred             c----------------------------cccceEEeecCCcceehhhccc-----cchhh------heeecCCCeEEEE
Confidence            1                            1123356789999999999998     66677      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      |+|+.+.+......     .|...|.|++|+| ++..||+|+.|++|++||+|+-.    +++.++.+|...|..|.|+|
T Consensus       256 D~R~~~~~~~~~~~-----ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  256 DTRSNTSKPSHSVK-----AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             EcCCCCCCCccccc-----ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCceeccCCCcceEEEEeCC
Confidence            99963233333333     8899999999999 55688999999999999999875    68899999999999999999


Q ss_pred             CC-CEEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          233 SS-DYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       233 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      .. ..|++++.|+.+.|||+..-...+.    .......+....+|...|..++|+| .....|++.++|+.+.||+...
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp-~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP-NEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC-CCCeEEEEecCCceEEEeeccc
Confidence            64 6789999999999999965432210    0112233455568888999999999 4577889999999999999875


Q ss_pred             hhh
Q 048511          308 SFL  310 (351)
Q Consensus       308 ~~~  310 (351)
                      .+.
T Consensus       406 ~i~  408 (422)
T KOG0264|consen  406 NIY  408 (422)
T ss_pred             ccc
Confidence            543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=1.3e-29  Score=241.08  Aligned_cols=263  Identities=14%  Similarity=0.156  Sum_probs=205.3

Q ss_pred             CceEEEEEccCCCceEEE---EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----c--cee
Q 048511            5 DNKIHLYRGQRTGKFVRA---CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----S--ANT   75 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~---~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----~--~~~   75 (351)
                      +|.+++|+... -+....   ..+..|.+.|.+++|+        +++++||||+.|++|+||++.....    .  ...
T Consensus       457 ~gl~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~i~fs--------~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~  527 (793)
T PLN00181        457 EGLCKYLSFSK-LRVKADLKQGDLLNSSNLVCAIGFD--------RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV  527 (793)
T ss_pred             hhhhhhhcccc-eEEEEeeccccccCCCCcEEEEEEC--------CCCCEEEEEeCCCEEEEEECCcccccccccccceE
Confidence            56677787765 222111   2245689999999999        8899999999999999999864211    0  011


Q ss_pred             ecccccceeeeEeee-cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           76 QSTYRKEVISLASYI-EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      .......+.+++|++ .+..+++++.++.+++|.        .+.+|.+.|++++|+|     .++.+      |++|+.
T Consensus       528 ~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p-----~~~~~------L~Sgs~  596 (793)
T PLN00181        528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS-----ADPTL------LASGSD  596 (793)
T ss_pred             EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC-----CCCCE------EEEEcC
Confidence            111234567788876 477899999999888775        3568999999999996     57788      999999


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      |++|++||++.  +..+..+.     . ...+.++.|+ +++.+|++|+.|+.|++||++...    .++..+.+|...|
T Consensus       597 Dg~v~iWd~~~--~~~~~~~~-----~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~~~~~h~~~V  664 (793)
T PLN00181        597 DGSVKLWSINQ--GVSIGTIK-----T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHSKTV  664 (793)
T ss_pred             CCEEEEEECCC--CcEEEEEe-----c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccceEecCCCCCE
Confidence            99999999998  66665554     2 3468999995 578999999999999999998753    3466778899999


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ..+.|. ++.+|++++.|++|++||++....    ...+..+..+.+|...+++++|++  ++.+|++|+.|+.|++|+.
T Consensus       665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~----~~~~~~l~~~~gh~~~i~~v~~s~--~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS----GINETPLHSFMGHTNVKNFVGLSV--SDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EEEEEe-CCCEEEEEECCCEEEEEeCCCCcc----ccCCcceEEEcCCCCCeeEEEEcC--CCCEEEEEeCCCEEEEEEC
Confidence            999997 678999999999999999975421    012235666778988899999999  8999999999999999997


Q ss_pred             C
Q 048511          306 P  306 (351)
Q Consensus       306 ~  306 (351)
                      .
T Consensus       738 ~  738 (793)
T PLN00181        738 A  738 (793)
T ss_pred             C
Confidence            5

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9e-31  Score=229.93  Aligned_cols=264  Identities=16%  Similarity=0.226  Sum_probs=187.7

Q ss_pred             EEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc---------ccceeeeEeee-
Q 048511           22 ACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY---------RKEVISLASYI-   90 (351)
Q Consensus        22 ~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~-   90 (351)
                      ...+. +|.++|++|.|+        ++|+||||||.|+.|+||.+...+.........         ...+..+.... 
T Consensus       259 ~Qe~~~ah~gaIw~mKFS--------~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~  330 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFS--------HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE  330 (712)
T ss_pred             eeccccccCCcEEEEEeC--------CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence            34566 899999999999        899999999999999999997633211000000         00000000000 


Q ss_pred             --cCCeEEe--c---------CC--ceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           91 --EGPVLVA--G---------SS--SYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        91 --~~~~l~~--~---------~~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                        .++....  +         ..  ...-+.+..+.||.+.|.+|.|+       ..++      |++++.|.+|++|++
T Consensus       331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-------Kn~f------LLSSSMDKTVRLWh~  397 (712)
T KOG0283|consen  331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-------KNNF------LLSSSMDKTVRLWHP  397 (712)
T ss_pred             cccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-------cCCe------eEeccccccEEeecC
Confidence              0000000  0         00  01113456689999999999999       3456      999999999999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                      ..  ..++..|.      |...|+|++|+| |.+|+++|+.|+.|+||++...+      +.....-...|++++|.|+|
T Consensus       398 ~~--~~CL~~F~------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~------Vv~W~Dl~~lITAvcy~PdG  463 (712)
T KOG0283|consen  398 GR--KECLKVFS------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK------VVDWNDLRDLITAVCYSPDG  463 (712)
T ss_pred             CC--cceeeEEe------cCCeeEEEEecccCCCcEeecccccceEEeecCcCe------eEeehhhhhhheeEEeccCC
Confidence            98  88888885      889999999999 77899999999999999998853      22333334789999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      ++.+.|+.+|.+++|+....+...  ......-..-+.....|+.+.|.|. +...+++.+.|..|||+|.. .+.+..|
T Consensus       464 k~avIGt~~G~C~fY~t~~lk~~~--~~~I~~~~~Kk~~~~rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  464 KGAVIGTFNGYCRFYDTEGLKLVS--DFHIRLHNKKKKQGKRITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             ceEEEEEeccEEEEEEccCCeEEE--eeeEeeccCccccCceeeeeEecCC-CCCeEEEecCCCceEEEeccchhhhhhh
Confidence            999999999999999998776322  0011111111111237999999983 34468888899999999985 7788889


Q ss_pred             eeccccccch
Q 048511          314 NHATFQESSF  323 (351)
Q Consensus       314 ~~~~~~~~~~  323 (351)
                      +++.......
T Consensus       541 KG~~n~~SQ~  550 (712)
T KOG0283|consen  541 KGFRNTSSQI  550 (712)
T ss_pred             cccccCCcce
Confidence            9887665543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.1e-31  Score=201.22  Aligned_cols=239  Identities=17%  Similarity=0.224  Sum_probs=196.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +++.|.++.||-..+ |  +.+-++.||++.|+|++..        .+.++|+||+.|.++++||+.+++.+....    
T Consensus        27 scaKD~~~~vw~s~n-G--erlGty~GHtGavW~~Did--------~~s~~liTGSAD~t~kLWDv~tGk~la~~k----   91 (327)
T KOG0643|consen   27 SCAKDSTPTVWYSLN-G--ERLGTYDGHTGAVWCCDID--------WDSKHLITGSADQTAKLWDVETGKQLATWK----   91 (327)
T ss_pred             EecCCCCceEEEecC-C--ceeeeecCCCceEEEEEec--------CCcceeeeccccceeEEEEcCCCcEEEEee----
Confidence            467899999998877 7  6788999999999999999        889999999999999999999998775444    


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEec
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQP  155 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~  155 (351)
                                                      -..+|..+.|+      .++++      ++....     .+.|.++|+
T Consensus        92 --------------------------------~~~~Vk~~~F~------~~gn~------~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   92 --------------------------------TNSPVKRVDFS------FGGNL------ILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             --------------------------------cCCeeEEEeec------cCCcE------EEEEehhhcCcceEEEEEEc
Confidence                                            34578899999      77776      555543     467999999


Q ss_pred             cCCC-----cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          156 EKTT-----GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       156 ~~~~-----~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      +..+     .++...+.     .+...++.+-|.|-+++|++|..||.|..||.+++.    +.+..-+.|...|+.+++
T Consensus       128 ~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIP-----TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVDSDEEHSSKINDLQF  198 (327)
T ss_pred             cCChhhhcccCceEEec-----CCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeeechhhhccccccccc
Confidence            8532     22233333     566889999999999999999999999999999985    567777889999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCcccccc---------------------------------Ccc------------ceE
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLM---------------------------------GEN------------SWH  265 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~---------------------------------~~~------------~~~  265 (351)
                      +|+..++++++.|.+-++||+.+.....+                                 ..+            .-+
T Consensus       199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE  278 (327)
T KOG0643|consen  199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE  278 (327)
T ss_pred             cCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence            99999999999999999999977654332                                 000            012


Q ss_pred             EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      ++.+.++|-++|++++|+|  +|...++|++||.||+.-...+.
T Consensus       279 EigrvkGHFGPINsvAfhP--dGksYsSGGEDG~VR~h~Fd~~Y  320 (327)
T KOG0643|consen  279 EIGRVKGHFGPINSVAFHP--DGKSYSSGGEDGYVRLHHFDSNY  320 (327)
T ss_pred             HhccccccccCcceeEECC--CCcccccCCCCceEEEEEeccch
Confidence            4567789999999999999  99999999999999998776443

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.3e-29  Score=224.26  Aligned_cols=218  Identities=17%  Similarity=0.222  Sum_probs=167.8

Q ss_pred             eeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .+.+|.+.|++++|+        + ++++|++|+.|++|++||+.+........                          
T Consensus        70 ~l~GH~~~V~~v~fs--------P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~--------------------------  115 (493)
T PTZ00421         70 ILLGQEGPIIDVAFN--------PFDPQKLFTASEDGTIMGWGIPEEGLTQNIS--------------------------  115 (493)
T ss_pred             eEeCCCCCEEEEEEc--------CCCCCEEEEEeCCCEEEEEecCCCccccccC--------------------------
Confidence            478999999999999        6 78899999999999999997653211100                          


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                        .....+.+|...|.+++|+|     ...++      |++++.|++|+|||+++  +.....+.     .|...|.+++
T Consensus       116 --~~l~~L~gH~~~V~~l~f~P-----~~~~i------LaSgs~DgtVrIWDl~t--g~~~~~l~-----~h~~~V~sla  175 (493)
T PTZ00421        116 --DPIVHLQGHTKKVGIVSFHP-----SAMNV------LASAGADMVVNVWDVER--GKAVEVIK-----CHSDQITSLE  175 (493)
T ss_pred             --cceEEecCCCCcEEEEEeCc-----CCCCE------EEEEeCCCEEEEEECCC--CeEEEEEc-----CCCCceEEEE
Confidence              12245688999999999995     23467      99999999999999998  66555554     7888999999


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc-EEEEEeecCCCEEEEEe----CCCcEEEEcCCCcccc
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA-VMDISWSRSSDYLLSVS----HDQTTRVFAPWKNVAS  257 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~s~~----~dg~i~vwd~~~~~~~  257 (351)
                      |+|++.+|++++.|+.|++||++++     +.+..+.+|.+. +..+.|.+++..+++++    .|+.|++||+++... 
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg-----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-  249 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDG-----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-  249 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCC-----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-
Confidence            9999999999999999999999987     456677788764 45678999887777654    479999999987641 


Q ss_pred             ccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC-chhhh
Q 048511          258 LMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP-LSFLK  311 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~  311 (351)
                              .+.....+ ...+....|++  ++.+|++++ .|+.|++||+. +..+.
T Consensus       250 --------p~~~~~~d~~~~~~~~~~d~--d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        250 --------PYSTVDLDQSSALFIPFFDE--DTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             --------ceeEeccCCCCceEEEEEcC--CCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence                    12211222 23355566777  888888877 59999999987 54443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.3e-29  Score=211.76  Aligned_cols=248  Identities=26%  Similarity=0.368  Sum_probs=205.2

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .++.+|.++|++++|+        +++++|++++.||.|++|++.+....... ..+...+..+.+.++++.+++++.++
T Consensus         3 ~~~~~h~~~i~~~~~~--------~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~   73 (289)
T cd00200           3 RTLKGHTGGVTCVAFS--------PDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLASGSSDK   73 (289)
T ss_pred             hHhcccCCCEEEEEEc--------CCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCC
Confidence            4677999999999999        88999999999999999999877543333 23344566899999999999998888


Q ss_pred             eEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511          103 QVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       103 ~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                      .+.++..        +..|...+.++.|+      +++.+      +++++.|+.|++||++.  +.....+.     .|
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------~~~~~~~~~i~~~~~~~--~~~~~~~~-----~~  134 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHTSYVSSVAFS------PDGRI------LSSSSRDKTIKVWDVET--GKCLTTLR-----GH  134 (289)
T ss_pred             eEEEEEcCcccceEEEeccCCcEEEEEEc------CCCCE------EEEecCCCeEEEEECCC--cEEEEEec-----cC
Confidence            8766543        45677889999999      56677      88888899999999997  55555554     67


Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ...+.+++|+|++.++++++.++.|++||++..     ++...+..|...+.+++|+|+++.+++++.|+.|++||++..
T Consensus       135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence            778999999999998888888999999999875     456677788889999999999999999999999999999876


Q ss_pred             cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .          .+..+..|...+.+++|++  ++.++++++.|+.|++|++. +..+..+..
T Consensus       210 ~----------~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~  259 (289)
T cd00200         210 K----------CLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSG  259 (289)
T ss_pred             c----------eecchhhcCCceEEEEEcC--CCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence            5          5555557777899999999  78888888889999999987 555555553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.5e-31  Score=219.44  Aligned_cols=235  Identities=18%  Similarity=0.247  Sum_probs=192.8

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ..+.++.||+..|+++.|.    |   ..+.+|++++.|+.|+||++....                             
T Consensus       205 k~~~~~~gH~kgvsai~~f----p---~~~hLlLS~gmD~~vklW~vy~~~-----------------------------  248 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWF----P---KKGHLLLSGGMDGLVKLWNVYDDR-----------------------------  248 (503)
T ss_pred             hheeeccCCccccchhhhc----c---ceeeEEEecCCCceEEEEEEecCc-----------------------------
Confidence            3467899999999999999    2   378999999999999999998633                             


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                           .+++++.+|..+|..++|+      .+|..      |++++.|+.|++||+++  |.++..+.      ....++
T Consensus       249 -----~~lrtf~gH~k~Vrd~~~s------~~g~~------fLS~sfD~~lKlwDtET--G~~~~~f~------~~~~~~  303 (503)
T KOG0282|consen  249 -----RCLRTFKGHRKPVRDASFN------NCGTS------FLSASFDRFLKLWDTET--GQVLSRFH------LDKVPT  303 (503)
T ss_pred             -----ceehhhhcchhhhhhhhcc------ccCCe------eeeeecceeeeeecccc--ceEEEEEe------cCCCce
Confidence                 2346778999999999999      89999      99999999999999999  98888876      344689


Q ss_pred             EEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511          180 GGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL  258 (351)
Q Consensus       180 ~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~  258 (351)
                      |+.|+|++ +.+++|+.|+.|+.||++++     +.++.+..|-+.|..+.|-++++++++.++|++++||+.+......
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-----kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSG-----KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcEEEEeccch-----HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            99999998 78999999999999999998     5688999999999999999999999999999999999986653221


Q ss_pred             c----------------------------CccceE--------Eeccccccccc--eeEEEEeeeCCCcEEEEecCCCeE
Q 048511          259 M----------------------------GENSWH--------EVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       259 ~----------------------------~~~~~~--------~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      .                            ....+.        .-..+.+|...  -..+.|+|  ||.+|++|+.||.+
T Consensus       379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDSDGKV  456 (503)
T ss_pred             hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecCCccE
Confidence            1                            000000        11123344322  45678999  99999999999999


Q ss_pred             EEEecC-chhhhceeeccccccc
Q 048511          301 RVFEAP-LSFLKTLNHATFQESS  322 (351)
Q Consensus       301 ~vw~~~-~~~~~~~~~~~~~~~~  322 (351)
                      .+||.+ .+.+..++.|.+.-..
T Consensus       457 ~~wdwkt~kl~~~lkah~~~ci~  479 (503)
T KOG0282|consen  457 NFWDWKTTKLVSKLKAHDQPCIG  479 (503)
T ss_pred             EEeechhhhhhhccccCCcceEE
Confidence            999987 7888899888654433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=194.13  Aligned_cols=258  Identities=17%  Similarity=0.212  Sum_probs=211.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|+++.||+++. .++..-....+|.+.|-.++|.    |   +..++|++++.|.+|++||++.+++...+..  .
T Consensus        37 sgs~dktv~v~n~e~-~r~~~~~~~~gh~~svdql~w~----~---~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~  106 (313)
T KOG1407|consen   37 SGSFDKTVSVWNLER-DRFRKELVYRGHTDSVDQLCWD----P---KHPDLFATASGDKTIRIWDIRSGKCTARIET--K  106 (313)
T ss_pred             ecccCCceEEEEecc-hhhhhhhcccCCCcchhhheeC----C---CCCcceEEecCCceEEEEEeccCcEEEEeec--c
Confidence            478999999999998 6666666788999999999999    3   4567999999999999999999988766554  3


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ....-+.|+|+|.++++++.+..+..+..-.       .....+.-+.|+      .++.+      |+.....|.|.|.
T Consensus       107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~------~~nd~------Fflt~GlG~v~IL  174 (313)
T KOG1407|consen  107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN------NSNDL------FFLTNGLGCVEIL  174 (313)
T ss_pred             CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeec------CCCCE------EEEecCCceEEEE
Confidence            4667889999999999999988876654322       123457888888      56666      6666777999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      ....  -+.+..++     .|.....||.|+|+|+++|+|+.|-.+.+||++.-     .+++.+..+.-+|+.+.|+.+
T Consensus       175 syps--Lkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-----iC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  175 SYPS--LKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-----ICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             eccc--cccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHh-----hhheeeccccCceEEEEeccC
Confidence            8876  66666665     89999999999999999999999999999999885     778888889999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---------CeEEEEe
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---------KVARVFE  304 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------g~v~vw~  304 (351)
                      |++||++++|-.|-|=+++++.      +.|+    . .+.++...++|+|  ...+||-+.+|         |.|++|-
T Consensus       243 g~~lASaSEDh~IDIA~vetGd------~~~e----I-~~~~~t~tVAWHP--k~~LLAyA~ddk~~d~~reag~vKiFG  309 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGD------RVWE----I-PCEGPTFTVAWHP--KRPLLAYACDDKDGDSNREAGTVKIFG  309 (313)
T ss_pred             cceeeccCccceEEeEecccCC------eEEE----e-eccCCceeEEecC--CCceeeEEecCCCCccccccceeEEec
Confidence            9999999999999999999987      2332    2 3667789999999  78888766644         4566665


Q ss_pred             c
Q 048511          305 A  305 (351)
Q Consensus       305 ~  305 (351)
                      +
T Consensus       310 ~  310 (313)
T KOG1407|consen  310 L  310 (313)
T ss_pred             C
Confidence            4

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.8e-31  Score=200.25  Aligned_cols=257  Identities=18%  Similarity=0.268  Sum_probs=213.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.||.-.+-+-++ |.+  +-+|.||.++|++....        .+..+-|+++.|=+-++||.-++..+..+..  ..
T Consensus        35 a~kd~~pmlr~g~t-gdw--igtfeghkgavw~~~l~--------~na~~aasaaadftakvw~a~tgdelhsf~h--kh  101 (334)
T KOG0278|consen   35 ASKDGKPMLRNGDT-GDW--IGTFEGHKGAVWSATLN--------KNATRAASAAADFTAKVWDAVTGDELHSFEH--KH  101 (334)
T ss_pred             eccCCCchhccCCC-CCc--EEeeeccCcceeeeecC--------chhhhhhhhcccchhhhhhhhhhhhhhhhhh--hh
Confidence            45566666666666 644  67999999999999999        7888899999999999999999887765553  34


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      -+.+++|+.+.+.|++|+.+..+++..         .+.+|.+.|..+.|.      ...+.      +++++.|++||+
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc------~eD~~------iLSSadd~tVRL  169 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC------HEDKC------ILSSADDKTVRL  169 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe------ccCce------EEeeccCCceEE
Confidence            678999999999999999877665432         367899999999999      66677      899999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||.++  +..++.+.      ...+|.++.++++|++|.+ ...+.|.+||..+-     .+++.++ -...|.+..++|
T Consensus       170 WD~rT--gt~v~sL~------~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf-----~~lKs~k-~P~nV~SASL~P  234 (334)
T KOG0278|consen  170 WDHRT--GTEVQSLE------FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSF-----GLLKSYK-MPCNVESASLHP  234 (334)
T ss_pred             EEecc--CcEEEEEe------cCCCCcceeeccCCCEEEE-ecCceeEEeccccc-----cceeecc-CccccccccccC
Confidence            99999  88887775      3557999999999986655 45677999999874     4565554 356789999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL  310 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~  310 (351)
                      +...+++|++|..++.||+.++.          .+..+ ++|.++|.|+.|+|  +|...++||+||+||+|... ++..
T Consensus       235 ~k~~fVaGged~~~~kfDy~Tge----------Ei~~~nkgh~gpVhcVrFSP--dGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  235 KKEFFVAGGEDFKVYKFDYNTGE----------EIGSYNKGHFGPVHCVRFSP--DGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceEEecCcceEEEEEeccCCc----------eeeecccCCCCceEEEEECC--CCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999999999998          55553 78999999999999  99999999999999999975 4443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-29  Score=240.23  Aligned_cols=238  Identities=16%  Similarity=0.185  Sum_probs=184.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  ..+..+.+|.+.|++++|+    |   .++.+|+||+.|++|++||+.++....       
T Consensus       550 s~~~Dg~v~lWd~~~-~--~~~~~~~~H~~~V~~l~~~----p---~~~~~L~Sgs~Dg~v~iWd~~~~~~~~-------  612 (793)
T PLN00181        550 SSNFEGVVQVWDVAR-S--QLVTEMKEHEKRVWSIDYS----S---ADPTLLASGSDDGSVKLWSINQGVSIG-------  612 (793)
T ss_pred             EEeCCCeEEEEECCC-C--eEEEEecCCCCCEEEEEEc----C---CCCCEEEEEcCCCEEEEEECCCCcEEE-------
Confidence            467899999999988 6  4567889999999999999    2   367899999999999999998764332       


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                  .+. +...|.++.|.+     +++.+      |++|+.|+.|++||++.  .
T Consensus       613 ----------------------------~~~-~~~~v~~v~~~~-----~~g~~------latgs~dg~I~iwD~~~--~  650 (793)
T PLN00181        613 ----------------------------TIK-TKANICCVQFPS-----ESGRS------LAFGSADHKVYYYDLRN--P  650 (793)
T ss_pred             ----------------------------EEe-cCCCeEEEEEeC-----CCCCE------EEEEeCCCeEEEEECCC--C
Confidence                                        122 235689999975     67888      99999999999999987  3


Q ss_pred             c-eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccccccccccEEEEEeecCCCEEE
Q 048511          161 I-WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISWSRSSDYLL  238 (351)
Q Consensus       161 ~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  238 (351)
                      . ....+.     +|...|.++.|. ++.+|++++.|++|++||++.... ....++..+.+|...+..++|+|++.+|+
T Consensus       651 ~~~~~~~~-----~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la  724 (793)
T PLN00181        651 KLPLCTMI-----GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA  724 (793)
T ss_pred             CccceEec-----CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence            2 233333     788899999997 678999999999999999975321 11245778889999999999999999999


Q ss_pred             EEeCCCcEEEEcCCCcccccc-CccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          239 SVSHDQTTRVFAPWKNVASLM-GENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +|+.|+.|++|+......... .......+.  ....+...|.+++|++  ++..|++|+.||.|+||++
T Consensus       725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~--~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG--QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC--CCCeEEEecCCCcEEEEec
Confidence            999999999999765431000 000000010  1123455699999999  8999999999999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=6.2e-30  Score=226.67  Aligned_cols=228  Identities=23%  Similarity=0.319  Sum_probs=199.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|++|++|+..+ +. .....+.||.+.|+++++.        ..+++|++|+.|.++++||..++++.        
T Consensus       223 ~~s~~~tl~~~~~~~-~~-~i~~~l~GH~g~V~~l~~~--------~~~~~lvsgS~D~t~rvWd~~sg~C~--------  284 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNN-GY-LILTRLVGHFGGVWGLAFP--------SGGDKLVSGSTDKTERVWDCSTGECT--------  284 (537)
T ss_pred             ecCCCceeEEeeccc-ce-EEEeeccCCCCCceeEEEe--------cCCCEEEEEecCCcEEeEecCCCcEE--------
Confidence            478899999999998 63 3444499999999999998        77889999999999999999988655        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 ..+.+|...|.++...+        ..      +++|+.|.+|++|++++  +
T Consensus       285 ---------------------------~~l~gh~stv~~~~~~~--------~~------~~sgs~D~tVkVW~v~n--~  321 (537)
T KOG0274|consen  285 ---------------------------HSLQGHTSSVRCLTIDP--------FL------LVSGSRDNTVKVWDVTN--G  321 (537)
T ss_pred             ---------------------------EEecCCCceEEEEEccC--------ce------EeeccCCceEEEEeccC--c
Confidence                                       45678999999998773        33      88889999999999998  8


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ..+..+.     +|..+|.++..+  +.++++|+.|++|++||+.+.     ++++.+.+|...|.++.+.+. ..+++|
T Consensus       322 ~~l~l~~-----~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-----~cl~sl~gH~~~V~sl~~~~~-~~~~Sg  388 (537)
T KOG0274|consen  322 ACLNLLR-----GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-----KCLKSLSGHTGRVYSLIVDSE-NRLLSG  388 (537)
T ss_pred             ceEEEec-----cccccEEEEEec--CCEEEEEecCceEEEEEhhhc-----eeeeeecCCcceEEEEEecCc-ceEEee
Confidence            8887776     699999999997  889999999999999999976     789999999999999988765 789999


Q ss_pred             eCCCcEEEEcCCCc-cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          241 SHDQTTRVFAPWKN-VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       241 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      +.|++|++||+++. +          ++..+.+|..-+..+.+    .+++|++++.|+.|++||.. +++++++++.
T Consensus       389 s~D~~IkvWdl~~~~~----------c~~tl~~h~~~v~~l~~----~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  389 SLDTTIKVWDLRTKRK----------CIHTLQGHTSLVSSLLL----RDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             eeccceEeecCCchhh----------hhhhhcCCccccccccc----ccceeEeccccccEEEeecccCceeeeeccC
Confidence            99999999999888 5          77788889888877766    46899999999999999976 8888888874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.4e-31  Score=211.39  Aligned_cols=206  Identities=22%  Similarity=0.339  Sum_probs=179.9

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      ....|.|+.+.          ...+++|..|.+|+|||.++..++                                   
T Consensus       196 ~skgVYClQYD----------D~kiVSGlrDnTikiWD~n~~~c~-----------------------------------  230 (499)
T KOG0281|consen  196 NSKGVYCLQYD----------DEKIVSGLRDNTIKIWDKNSLECL-----------------------------------  230 (499)
T ss_pred             cCCceEEEEec----------chhhhcccccCceEEeccccHHHH-----------------------------------
Confidence            35689999998          668999999999999999876544                                   


Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      ..+.||++.|.|+.|.        .+.      +++|+.|.+|++||.++  +++++++.     +|...|..+.|+  +
T Consensus       231 ~~L~GHtGSVLCLqyd--------~rv------iisGSSDsTvrvWDv~t--ge~l~tli-----hHceaVLhlrf~--n  287 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--------ERV------IVSGSSDSTVRVWDVNT--GEPLNTLI-----HHCEAVLHLRFS--N  287 (499)
T ss_pred             HhhhcCCCcEEeeecc--------ceE------EEecCCCceEEEEeccC--CchhhHHh-----hhcceeEEEEEe--C
Confidence            4568999999999987        236      99999999999999999  88887776     888899999995  4


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV  267 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  267 (351)
                      .++++++.|.++.+||+.....  ..+...+.+|...|+.+.|+  .+++++++.|.+|++|++.+.+          .+
T Consensus       288 g~mvtcSkDrsiaVWdm~sps~--it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e----------fv  353 (499)
T KOG0281|consen  288 GYMVTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE----------FV  353 (499)
T ss_pred             CEEEEecCCceeEEEeccCchH--HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee----------ee
Confidence            6899999999999999976531  25667788999999999996  5699999999999999998876          78


Q ss_pred             ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      ..+.+|...|.|+.+    .++++++|+.|.+||+||+. |.+++.|++|...
T Consensus       354 Rtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL  402 (499)
T KOG0281|consen  354 RTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL  402 (499)
T ss_pred             hhhhcccccceehhc----cCeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence            888999999999988    57999999999999999998 9999999999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=5.7e-30  Score=213.08  Aligned_cols=259  Identities=21%  Similarity=0.305  Sum_probs=194.8

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----ceeecccccceeeeEeeecCCeEE
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS----ANTQSTYRKEVISLASYIEGPVLV   96 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~   96 (351)
                      ....+++|+..|.++++.        +.|.+|+|||.|-+|++||+......    ..+.......+.++.|++.|..++
T Consensus       159 hEi~l~hgtk~Vsal~~D--------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iL  230 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVD--------PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQIL  230 (641)
T ss_pred             ceEeccCCceEEEEeeec--------CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEE
Confidence            345788999999999999        88999999999999999999865432    223333356788999999988766


Q ss_pred             ecCCceeEEE--------------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511           97 AGSSSYQVSV--------------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        97 ~~~~~~~~~~--------------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                      +.......++                    ...-+||...++|.+|+|     .+.+.      |++++.||+++|||+.
T Consensus       231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP-----~~k~~------FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP-----DNKEE------FLTCSYDGTLRIWDVN  299 (641)
T ss_pred             EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc-----Ccccc------eEEecCCCcEEEEecC
Confidence            6433322222                    223578999999999998     45556      9999999999999998


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeecCC
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSRSS  234 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~~  234 (351)
                      ... .....++.....+...++++++|+|+++.||+|+.||.|.+|+......+  .....-.+|..  .|++|.||++|
T Consensus       300 ~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~--p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  300 NTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR--PVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             Cch-hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--cceEeeeccCCCCceeEEEecccc
Confidence            742 33344444444456668899999999999999999999999998553321  11233346766  89999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCcccccc-----------------------------------------CccceEEecccccc
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLM-----------------------------------------GENSWHEVARPQVH  273 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~  273 (351)
                      ++|++-+.|+++++||+++.+....                                         ...++..+.++...
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            9999999999999999987654332                                         11223334444444


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      +..|..+.|+|  .-+.|.+|+.||.++||
T Consensus       457 ~aSvv~~~Whp--kLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  457 TASVVRCLWHP--KLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             CceEEEEeecc--hhhheeeecCCCceEEE
Confidence            56688899999  77888889999999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=5.8e-31  Score=207.57  Aligned_cols=260  Identities=17%  Similarity=0.226  Sum_probs=221.3

Q ss_pred             CCCCCceEEEEEccCCCceEE------EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511            1 MGGLDNKIHLYRGQRTGKFVR------ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~------~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      +|+.||-|.|||..+ |++..      ...+--|.++|.|+.|+        .+...||+|+.||.|++|.+.++.++..
T Consensus       230 sgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FS--------RDsEMlAsGsqDGkIKvWri~tG~ClRr  300 (508)
T KOG0275|consen  230 SGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFS--------RDSEMLASGSQDGKIKVWRIETGQCLRR  300 (508)
T ss_pred             eccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeec--------ccHHHhhccCcCCcEEEEEEecchHHHH
Confidence            589999999999988 65433      23345578899999999        8899999999999999999999999999


Q ss_pred             eecccccceeeeEeeecCCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ....+...+.++.|+.|+..+.+++.+..+++        .+.+.||...|+...|.      ++|..      +++++.
T Consensus       301 FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft------~dG~~------iisaSs  368 (508)
T KOG0275|consen  301 FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT------DDGHH------IISASS  368 (508)
T ss_pred             hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc------CCCCe------EEEecC
Confidence            99899999999999999999999988877754        45688999999999999      89999      999999


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCccccccccc---cc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG---HF  222 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~  222 (351)
                      ||+|++|+.++  .+++.+++.   .+...+|.++..-|. ...++++...+++++.++...      .++.+..   ..
T Consensus       369 DgtvkvW~~Kt--teC~~Tfk~---~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ------vVrsfsSGkREg  437 (508)
T KOG0275|consen  369 DGTVKVWHGKT--TECLSTFKP---LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ------VVRSFSSGKREG  437 (508)
T ss_pred             CccEEEecCcc--hhhhhhccC---CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce------EEeeeccCCccC
Confidence            99999999999  888888773   345667888887774 468999999999999998873      4554432   23


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      +...+.+.+|.|.++.+.++|+.++.|.+.++.          .-..+..|...+..++-+|  ..++||+-++||.+++
T Consensus       438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~----------LE~tl~VhEkdvIGl~HHP--HqNllAsYsEDgllKL  505 (508)
T KOG0275|consen  438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK----------LERTLPVHEKDVIGLTHHP--HQNLLASYSEDGLLKL  505 (508)
T ss_pred             CceEEEEecCCCcEEEEEccCcEEEEEEeecCc----------eeeeeecccccccccccCc--ccchhhhhcccchhhh
Confidence            445667889999999999999999999998887          4445567888899999999  8899999999999999


Q ss_pred             Ee
Q 048511          303 FE  304 (351)
Q Consensus       303 w~  304 (351)
                      |.
T Consensus       506 Wk  507 (508)
T KOG0275|consen  506 WK  507 (508)
T ss_pred             cC
Confidence            96

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-28  Score=211.52  Aligned_cols=253  Identities=18%  Similarity=0.276  Sum_probs=212.3

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      ...|++|+..+ ++...+..+.  ...|+++.|+        ++|.+|+.|..+|.|.|||..+.+....+...+...+-
T Consensus       196 g~~vylW~~~s-~~v~~l~~~~--~~~vtSv~ws--------~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg  264 (484)
T KOG0305|consen  196 GQSVYLWSASS-GSVTELCSFG--EELVTSVKWS--------PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG  264 (484)
T ss_pred             cceEEEEecCC-CceEEeEecC--CCceEEEEEC--------CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence            45799999999 7655555554  8899999999        89999999999999999999988877777665677788


Q ss_pred             eeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      +++|.  +..+.+|..++.+....         .+.+|...|..++|+      +|+++      ||+|+.|+.+.|||.
T Consensus       265 ~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws------~d~~~------lASGgnDN~~~Iwd~  330 (484)
T KOG0305|consen  265 SLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS------PDGNQ------LASGGNDNVVFIWDG  330 (484)
T ss_pred             EEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC------CCCCe------eccCCCccceEeccC
Confidence            88888  77888888888774432         377899999999999      89999      999999999999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ..  ......+.     .|...|..++|+| ....||+|+  .|+.|++||..++     ..+..+. ..+.|.+|.|++
T Consensus       331 ~~--~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vd-tgsQVcsL~Wsk  397 (484)
T KOG0305|consen  331 LS--PEPKFTFT-----EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVD-TGSQVCSLIWSK  397 (484)
T ss_pred             CC--ccccEEEe-----ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccc-cCCceeeEEEcC
Confidence            66  55555555     8999999999999 456788866  6899999999987     4455554 456899999999


Q ss_pred             CCCEEEEE--eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          233 SSDYLLSV--SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       233 ~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ..+-|+++  -.+..|.||++.+.+          .+..+.+|...|..++++|  |+..+++|+.|.++++|++-.
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps~~----------~~~~l~gH~~RVl~la~SP--dg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPSMK----------LVAELLGHTSRVLYLALSP--DGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccccc----------eeeeecCCcceeEEEEECC--CCCEEEEecccCcEEeccccC
Confidence            88766654  347799999997765          7788889999999999999  999999999999999999653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.5e-29  Score=214.94  Aligned_cols=273  Identities=18%  Similarity=0.232  Sum_probs=221.9

Q ss_pred             CCceEEEEEccCCCce------EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511            4 LDNKIHLYRGQRTGKF------VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      .+++|..|.++..++.      ....++.||...|.+++++        .+...++||+ .+.|++|+..+.+++..+..
T Consensus       342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS--------~d~~~~~Sga-~~SikiWn~~t~kciRTi~~  412 (888)
T KOG0306|consen  342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS--------SDSILLASGA-GESIKIWNRDTLKCIRTITC  412 (888)
T ss_pred             ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee--------cCceeeeecC-CCcEEEEEccCcceeEEecc
Confidence            3566777766541111      1124677999999999999        7777777776 56899999999998887765


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .   .+.+..|.|.++++++|...+.+.+..        ...+|.+.+++++.+      ||+..      +++||.|.+
T Consensus       413 ~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~------pD~~g------~vT~saDkt  477 (888)
T KOG0306|consen  413 G---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS------PDNKG------FVTGSADKT  477 (888)
T ss_pred             c---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec------CCCCc------eEEecCCcE
Confidence            4   778888999999999999999876654        467899999999999      78888      999999999


Q ss_pred             EEEEeccCCC---cceEEEEEec--cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc
Q 048511          150 MMIWQPEKTT---GIWMNVVTVG--ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       150 i~iwd~~~~~---~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      |++||.....   +...+.+.+.  ..-.-+..|.|+.+|||+++|+++--|.++++|-+++-     +....+.+|.-+
T Consensus       478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----KFflsLYGHkLP  552 (888)
T KOG0306|consen  478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----KFFLSLYGHKLP  552 (888)
T ss_pred             EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-----eeeeeecccccc
Confidence            9999986411   1111111111  11134567999999999999999999999999999985     567789999999


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      |.++..+||++.++|||.|++|+||-+.-+.          +...+.+|...|.++.|.|  ...++.++|.|+.|+-||
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGD----------CHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGD----------CHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccch----------hhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeec
Confidence            9999999999999999999999999998887          6667779999999999999  899999999999999999


Q ss_pred             cC-chhhhceeecc
Q 048511          305 AP-LSFLKTLNHAT  317 (351)
Q Consensus       305 ~~-~~~~~~~~~~~  317 (351)
                      -. -..++.+.+|.
T Consensus       621 g~kFe~iq~L~~H~  634 (888)
T KOG0306|consen  621 GEKFEEIQKLDGHH  634 (888)
T ss_pred             hhhhhhheeeccch
Confidence            65 56677777765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=199.70  Aligned_cols=259  Identities=22%  Similarity=0.318  Sum_probs=204.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee--ecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT--QST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~~   78 (351)
                      +++.|.+-+||.+++ +  .++.++.||.+.|++|+|+        +.+.+++|++.|++-.||...-.-.....  ...
T Consensus       165 tASADhTA~iWs~Es-g--~CL~~Y~GH~GSVNsikfh--------~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~  233 (481)
T KOG0300|consen  165 TASADHTARIWSLES-G--ACLATYTGHTGSVNSIKFH--------NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD  233 (481)
T ss_pred             ecccccceeEEeecc-c--cceeeecccccceeeEEec--------cccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence            578899999999999 8  6788999999999999999        88999999999999999984211111000  000


Q ss_pred             c-----------ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           79 Y-----------RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        79 ~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      +           ......-....+|..+        -.....+.+|...|.+..|.      ..++.      +++++.|
T Consensus       234 hSsEeE~e~sDe~~~d~d~~~~sD~~ti--------RvPl~~ltgH~~vV~a~dWL------~gg~Q------~vTaSWD  293 (481)
T KOG0300|consen  234 HSSEEEEEHSDEHNRDTDSSEKSDGHTI--------RVPLMRLTGHRAVVSACDWL------AGGQQ------MVTASWD  293 (481)
T ss_pred             CCchhhhhcccccccccccccccCCcee--------eeeeeeeeccccceEehhhh------cCcce------eeeeecc
Confidence            0           0000000011111111        12345688999999999999      78888      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      .+..+||+++  ++.+..+.     +|....+.++-+|..+++++++.|.+.++||++..-    +.+..|++|...|++
T Consensus       294 RTAnlwDVEt--ge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI----~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  294 RTANLWDVET--GEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI----QSVAVFQGHTDTVTS  362 (481)
T ss_pred             ccceeeeecc--Cceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhc----ceeeeecccccceeE
Confidence            9999999999  88877766     899999999999999999999999999999998652    668899999999999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      +.|..+. .+++|+.|.+|+|||+++...         ++..+. ...+++.++++.  ++..|+.--++..||+||++|
T Consensus       363 ~vF~~dd-~vVSgSDDrTvKvWdLrNMRs---------plATIR-tdS~~NRvavs~--g~~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  363 VVFNTDD-RVVSGSDDRTVKVWDLRNMRS---------PLATIR-TDSPANRVAVSK--GHPIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             EEEecCC-ceeecCCCceEEEeeeccccC---------cceeee-cCCccceeEeec--CCceEEeccCCceEEEEecCC
Confidence            9999875 588999999999999998773         344432 346689999998  677888888999999999998


Q ss_pred             hhhhcee
Q 048511          308 SFLKTLN  314 (351)
Q Consensus       308 ~~~~~~~  314 (351)
                      ..+..|.
T Consensus       430 ~RlaRlP  436 (481)
T KOG0300|consen  430 NRLARLP  436 (481)
T ss_pred             CccccCC
Confidence            8777665

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.5e-28  Score=213.15  Aligned_cols=254  Identities=15%  Similarity=0.183  Sum_probs=221.7

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ..++|+||+.++ .  ++++++..  +-+.+..|.        |.++++++|...|.+.++|+.....+..+. .+...+
T Consensus       392 a~~SikiWn~~t-~--kciRTi~~--~y~l~~~Fv--------pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaI  457 (888)
T KOG0306|consen  392 AGESIKIWNRDT-L--KCIRTITC--GYILASKFV--------PGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAI  457 (888)
T ss_pred             CCCcEEEEEccC-c--ceeEEecc--ccEEEEEec--------CCCceEEEeccCCceEEEEeehhhhhhhhh-ccccce
Confidence            467999999997 5  66777763  488999999        889999999999999999999876665554 667889


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEec-------------c-------ccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLL-------------I-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      .+++.+|++..+++++.+..+++|..-             .       .-.+.|.|+.++      ||+++      |+.
T Consensus       458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S------pdgk~------LaV  525 (888)
T KOG0306|consen  458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS------PDGKL------LAV  525 (888)
T ss_pred             eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc------CCCcE------EEE
Confidence            999999999999999999988776531             1       123578999999      89999      999


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      +--|++|+||-+.+  -+..-.+     -+|..+|.|+..+||++.+++|+.|..|++|-++-+     .|.+.+.+|..
T Consensus       526 sLLdnTVkVyflDt--lKFflsL-----YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-----DCHKS~fAHdD  593 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDT--LKFFLSL-----YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-----DCHKSFFAHDD  593 (888)
T ss_pred             EeccCeEEEEEecc--eeeeeee-----cccccceeEEeccCCcCeEEeccCCCceEEeccccc-----hhhhhhhcccC
Confidence            99999999999988  4433333     389999999999999999999999999999999988     57899999999


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      .|+++.|.|....+++++.|+.|+-||-....          .+..+.+|...|+|++..|  +|.+++++|.|..||+|
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----------~iq~L~~H~~ev~cLav~~--~G~~vvs~shD~sIRlw  661 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----------EIQKLDGHHSEVWCLAVSP--NGSFVVSSSHDKSIRLW  661 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhh----------hheeeccchheeeeeEEcC--CCCeEEeccCCceeEee
Confidence            99999999999999999999999999976655          7888889999999999999  99999999999999999


Q ss_pred             ecCc
Q 048511          304 EAPL  307 (351)
Q Consensus       304 ~~~~  307 (351)
                      ....
T Consensus       662 E~td  665 (888)
T KOG0306|consen  662 ERTD  665 (888)
T ss_pred             eccC
Confidence            9664

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-30  Score=219.11  Aligned_cols=238  Identities=19%  Similarity=0.281  Sum_probs=199.8

Q ss_pred             CCCCCceEEEEEccCCCc---eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511            1 MGGLDNKIHLYRGQRTGK---FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      |||.||.|++|++.....   -.....++.|.+.|+.+...        .+++.|+++|.|-+|++|+......      
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~--------~~~~tlIS~SsDtTVK~W~~~~~~~------  107 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC--------GNGKTLISASSDTTVKVWNAHKDNT------  107 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh--------cCCCceEEecCCceEEEeecccCcc------
Confidence            689999999999876221   12467889999999999999        8899999999999999999987641      


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                                 -+.+++..|.+.|.|+++-.     ++..+      +|+|+-|+.|.+||+..
T Consensus       108 ---------------------------~c~stir~H~DYVkcla~~a-----k~~~l------vaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen  108 ---------------------------FCMSTIRTHKDYVKCLAYIA-----KNNEL------VASGGLDRKIFLWDINT  149 (735)
T ss_pred             ---------------------------hhHhhhhcccchheeeeecc-----cCcee------EEecCCCccEEEEEccC
Confidence                                       12245677999999999932     67778      99999999999999997


Q ss_pred             CCcceEE---EEEecccc-ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          158 TTGIWMN---VVTVGELS-HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       158 ~~~~~~~---~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      .....+.   ........ ++..+|++++.++.+..+++|+..+.+++||.++.     +.+..+.+|...|..+..++|
T Consensus       150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~-----~kimkLrGHTdNVr~ll~~dD  224 (735)
T KOG0308|consen  150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC-----KKIMKLRGHTDNVRVLLVNDD  224 (735)
T ss_pred             cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-----cceeeeeccccceEEEEEcCC
Confidence            3212221   22222233 77889999999999999999999999999999997     457788899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |..+++++.||+|++||+...+          ++.++..|...|+++..+|  +-..+.+|+.||.|..=|+..
T Consensus       225 Gt~~ls~sSDgtIrlWdLgqQr----------Cl~T~~vH~e~VWaL~~~~--sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  225 GTRLLSASSDGTIRLWDLGQQR----------CLATYIVHKEGVWALQSSP--SFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             CCeEeecCCCceEEeeeccccc----------eeeeEEeccCceEEEeeCC--CcceEEecCCCCcEEecccCC
Confidence            9999999999999999998877          6777889999999999998  889999999999999988764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.4e-28  Score=197.64  Aligned_cols=251  Identities=21%  Similarity=0.246  Sum_probs=196.5

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCC---eEEecCCceeE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGP---VLVAGSSSYQV  104 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~  104 (351)
                      |.+.|.+|...          ++.++||++||++++||.....  .....++...+.++++...+.   .+++++.+..+
T Consensus       104 hdDWVSsv~~~----------~~~IltgsYDg~~riWd~~Gk~--~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  104 HDDWVSSVKGA----------SKWILTGSYDGTSRIWDLKGKS--IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             chhhhhhhccc----------CceEEEeecCCeeEEEecCCce--EEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            67778777765          6799999999999999987432  233445556677666655444   58899999888


Q ss_pred             EEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc------------
Q 048511          105 SVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG------------  160 (351)
Q Consensus       105 ~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------  160 (351)
                      .++..            -.||...|.++...      +++..      +++|+.|.+|+||+......            
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~------~sgtr------~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVD------SSGTR------FCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEec------CCCCe------EEeecccceeeecccCCCccccccccchhhhh
Confidence            77653            34899999999999      78899      99999999999999432100            


Q ss_pred             ------ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          161 ------IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       161 ------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                            +.....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.     ...++. ....++++.++|..
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-----~~~~~~-~~ksl~~i~~~~~~  312 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-----LKSTLT-TNKSLNCISYSPLS  312 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-----ceeeee-cCcceeEeeccccc
Confidence                  0001111223468999999999988 7789999999999999999984     455554 34578999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhc
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKT  312 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~  312 (351)
                      ++|++|+.|..|++||.+++....       ....+.+|...|..+.|+| .+...|++|+.|+++++||++  ...+..
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~-------v~~s~~gH~nwVssvkwsp-~~~~~~~S~S~D~t~klWDvRS~k~plyd  384 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSV-------VSQSLIGHKNWVSSVKWSP-TNEFQLVSGSYDNTVKLWDVRSTKAPLYD  384 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCce-------eEEeeecchhhhhheecCC-CCceEEEEEecCCeEEEEEeccCCCccee
Confidence            999999999999999999987432       4556779999999999999 567889999999999999987  336777


Q ss_pred             eeecc
Q 048511          313 LNHAT  317 (351)
Q Consensus       313 ~~~~~  317 (351)
                      +.+|.
T Consensus       385 I~~h~  389 (423)
T KOG0313|consen  385 IAGHN  389 (423)
T ss_pred             eccCC
Confidence            77663

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=8.3e-29  Score=189.61  Aligned_cols=219  Identities=19%  Similarity=0.258  Sum_probs=180.1

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      ..+++|...|.+|+|+        .+|..|++++.|+++++|++.........                           
T Consensus        14 r~~~~~~~~v~Sv~wn--------~~g~~lasgs~dktv~v~n~e~~r~~~~~---------------------------   58 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWN--------CDGTKLASGSFDKTVSVWNLERDRFRKEL---------------------------   58 (313)
T ss_pred             HHhhhhhhcceEEEEc--------ccCceeeecccCCceEEEEecchhhhhhh---------------------------
Confidence            4678899999999999        89999999999999999999876433222                           


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                            ...+|.+.|-.++|.|     +...+      |++++.|.+|++||++.  +++...+.      ....-.-+.
T Consensus        59 ------~~~gh~~svdql~w~~-----~~~d~------~atas~dk~ir~wd~r~--~k~~~~i~------~~~eni~i~  113 (313)
T KOG1407|consen   59 ------VYRGHTDSVDQLCWDP-----KHPDL------FATASGDKTIRIWDIRS--GKCTARIE------TKGENINIT  113 (313)
T ss_pred             ------cccCCCcchhhheeCC-----CCCcc------eEEecCCceEEEEEecc--CcEEEEee------ccCcceEEE
Confidence                  3578999999999998     55566      99999999999999999  77776654      223345688


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcc------------------------------------cCcccccccccccccEE
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDI------------------------------------DNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~------------------------------------~~~~~~~~~~~~~~~v~  226 (351)
                      |+|+|.++++++.|..|.+.|.++.+.                                    ...+++..+++|.....
T Consensus       114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi  193 (313)
T KOG1407|consen  114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI  193 (313)
T ss_pred             EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence            999999999999999999998876432                                    13467788889999999


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|.|+|+|++||+|+.|-.+.+||+...-          +...+.-+..+|..++|+.  +|++||+||+|..|-|=+++
T Consensus       194 cI~f~p~GryfA~GsADAlvSLWD~~ELi----------C~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  194 CIEFDPDGRYFATGSADALVSLWDVDELI----------CERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             EEEECCCCceEeeccccceeeccChhHhh----------hheeeccccCceEEEEecc--CcceeeccCccceEEeEecc
Confidence            99999999999999999999999997654          4455556778899999999  99999999999998776654


Q ss_pred             -chhhhce
Q 048511          307 -LSFLKTL  313 (351)
Q Consensus       307 -~~~~~~~  313 (351)
                       |..+..+
T Consensus       262 tGd~~~eI  269 (313)
T KOG1407|consen  262 TGDRVWEI  269 (313)
T ss_pred             cCCeEEEe
Confidence             4444433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-28  Score=216.23  Aligned_cols=232  Identities=25%  Similarity=0.352  Sum_probs=190.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|-+|+||+..+ .  .++.++.||-+-|..+.|+        +.-.+++|+|.|.+|+||+..+++++        
T Consensus        68 SGGDDykIkVWnYk~-r--rclftL~GHlDYVRt~~FH--------heyPWIlSASDDQTIrIWNwqsr~~i--------  128 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKT-R--RCLFTLLGHLDYVRTVFFH--------HEYPWILSASDDQTIRIWNWQSRKCI--------  128 (1202)
T ss_pred             ecCCccEEEEEeccc-c--eehhhhccccceeEEeecc--------CCCceEEEccCCCeEEEEeccCCceE--------
Confidence            589999999999988 5  6889999999999999999        77889999999999999999987554        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-  159 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-  159 (351)
                                                 ..+.||...|.|.+|+      |...+      ++++|-|.+||+||+..-. 
T Consensus       129 ---------------------------avltGHnHYVMcAqFh------ptEDl------IVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen  129 ---------------------------AVLTGHNHYVMCAQFH------PTEDL------IVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ---------------------------EEEecCceEEEeeccC------Cccce------EEEecccceEEEEeecchhc
Confidence                                       5678999999999999      56667      9999999999999986410 


Q ss_pred             -----c--------c-----eE---EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          160 -----G--------I-----WM---NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       160 -----~--------~-----~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                           +        .     ..   ..+...-+.+|...|.-++|+|.-..+++|+.|..|++|.+...+.   -.+-+.
T Consensus       170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa---WEvDtc  246 (1202)
T KOG0292|consen  170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA---WEVDTC  246 (1202)
T ss_pred             cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc---eeehhh
Confidence                 0        0     00   0111122468999999999999999999999999999999876542   346678


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      .+|.+.|.++-|+|...++++.++|++|+|||+..+.          .+..++......++++.+|  ..+++++|-+.|
T Consensus       247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----------~v~tfrrendRFW~laahP--~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----------SVQTFRRENDRFWILAAHP--ELNLFAAGHDSG  314 (1202)
T ss_pred             hcccCCcceEEecCccceeEecCCCccEEEEeccccc----------ceeeeeccCCeEEEEEecC--CcceeeeecCCc
Confidence            8999999999999999999999999999999998887          4555544556789999999  778777775554


Q ss_pred             eEEEEecC
Q 048511          299 VARVFEAP  306 (351)
Q Consensus       299 ~v~vw~~~  306 (351)
                       +.||.++
T Consensus       315 -m~VFkle  321 (1202)
T KOG0292|consen  315 -MIVFKLE  321 (1202)
T ss_pred             -eEEEEEc
Confidence             4566654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9e-28  Score=184.86  Aligned_cols=198  Identities=23%  Similarity=0.315  Sum_probs=175.0

Q ss_pred             cccceeeeEeeec-CCeEEecCCceeEEEEEec------------cccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           79 YRKEVISLASYIE-GPVLVAGSSSYQVSVESLL------------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        79 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~------------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      +...+..++++|. |..|++++.+..++++..-            .+|+..|.+++|+      |.|++      |++||
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws------p~g~~------La~aS   80 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS------PHGRY------LASAS   80 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec------CCCcE------EEEee
Confidence            3446778899998 8899999999888776643            3588999999999      78899      99999


Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      .|.++.||.-...+-+++.++.     +|...|.|++|+++|++||+++.|+.|.||.+....  .+.+...++.|...|
T Consensus        81 FD~t~~Iw~k~~~efecv~~lE-----GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--Efec~aVL~~HtqDV  153 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATLE-----GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--EFECIAVLQEHTQDV  153 (312)
T ss_pred             ccceEEEeecCCCceeEEeeee-----ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--cEEEEeeeccccccc
Confidence            9999999998875455555554     999999999999999999999999999999997443  368889999999999


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      ..+.|+|...+|++++.|.+|++|+-....       .|..+..+.+|...|++++|++  .|..|+++++|++|+||.
T Consensus       154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------dW~c~~tl~g~~~TVW~~~F~~--~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------DWECVQTLDGHENTVWSLAFDN--IGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             cEEEEcCCcceeEEeccCCeEEEEeecCCC-------CeeEEEEecCccceEEEEEecC--CCceEEEecCCcceEeee
Confidence            999999999999999999999999987543       7889999999999999999999  899999999999999998

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=198.80  Aligned_cols=237  Identities=18%  Similarity=0.198  Sum_probs=191.1

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (351)
                      +..+.+-|..|+        |++.+|++|+.||-|.+||..+++......-.                           .
T Consensus       211 g~KSh~EcA~FS--------PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ---------------------------A  255 (508)
T KOG0275|consen  211 GQKSHVECARFS--------PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ---------------------------A  255 (508)
T ss_pred             ccccchhheeeC--------CCCceEeeccccceeeeehhccchhhhhhhhh---------------------------h
Confidence            345567899999        89999999999999999999988754433211                           1


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (351)
                      ...+--+.++|.|+.|+      .|..+      +|+|+.||.|++|.+++  |.+++.+.    ..|...|+|+.|+.|
T Consensus       256 qd~fMMmd~aVlci~FS------RDsEM------lAsGsqDGkIKvWri~t--G~ClRrFd----rAHtkGvt~l~FSrD  317 (508)
T KOG0275|consen  256 QDNFMMMDDAVLCISFS------RDSEM------LASGSQDGKIKVWRIET--GQCLRRFD----RAHTKGVTCLSFSRD  317 (508)
T ss_pred             hcceeecccceEEEeec------ccHHH------hhccCcCCcEEEEEEec--chHHHHhh----hhhccCeeEEEEccC
Confidence            12344578999999999      89999      99999999999999999  88888775    378889999999999


Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-------  259 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------  259 (351)
                      +..+++++.|.++++.-+..+     ++++.+.+|.+.|+...|.++|+.+++++.||+|++|+..+.++..+       
T Consensus       318 ~SqiLS~sfD~tvRiHGlKSG-----K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d  392 (508)
T KOG0275|consen  318 NSQILSASFDQTVRIHGLKSG-----KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD  392 (508)
T ss_pred             cchhhcccccceEEEeccccc-----hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc
Confidence            999999999999999999998     77999999999999999999999999999999999999988776543       


Q ss_pred             -Cccce--------------------------EEeccc---cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511          260 -GENSW--------------------------HEVARP---QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS  308 (351)
Q Consensus       260 -~~~~~--------------------------~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~  308 (351)
                       .....                          +.+..+   +-.++...+.+.+|  .|.++.+.++|+.++.|... |+
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSp--kGewiYcigED~vlYCF~~~sG~  470 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSP--KGEWIYCIGEDGVLYCFSVLSGK  470 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecC--CCcEEEEEccCcEEEEEEeecCc
Confidence             00000                          011111   11233455667888  89999999999999999965 88


Q ss_pred             hhhceeeccccccch
Q 048511          309 FLKTLNHATFQESSF  323 (351)
Q Consensus       309 ~~~~~~~~~~~~~~~  323 (351)
                      ...++.-|.....+.
T Consensus       471 LE~tl~VhEkdvIGl  485 (508)
T KOG0275|consen  471 LERTLPVHEKDVIGL  485 (508)
T ss_pred             eeeeeeccccccccc
Confidence            888887776554443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.3e-27  Score=185.14  Aligned_cols=255  Identities=17%  Similarity=0.179  Sum_probs=191.7

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ++...+..-.+.|++|.|+        .+|.+|++++.|-++++||..++.....+.... ..+-.+.|......+..+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs--------~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sS   75 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFS--------DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSS   75 (311)
T ss_pred             ccccccccCCCceeEEEec--------CCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEcc
Confidence            3445566567899999999        899999999999999999999998877665442 2344445555444444444


Q ss_pred             C--ceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          100 S--SYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       100 ~--~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      .  +..++        .++.+.||.+.|++|..+|      -+..      +++++.|++|++||++.  ..+...+.. 
T Consensus        76 tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP------~~d~------FlS~S~D~tvrLWDlR~--~~cqg~l~~-  140 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP------KDDT------FLSSSLDKTVRLWDLRV--KKCQGLLNL-  140 (311)
T ss_pred             CCCCCceEEEEeecCceEEEcCCCCceEEEEEecC------CCCe------EEecccCCeEEeeEecC--CCCceEEec-
Confidence            3  44443        3566899999999999995      5577      99999999999999997  444444431 


Q ss_pred             cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                            ..-..++|+|+|-++|++.....|++||++.-....+.....-.+-....+.|.|||||++|+.++..+.+++.
T Consensus       141 ------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  141 ------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL  214 (311)
T ss_pred             ------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence                  12245799999999999998889999999876543333332222446788999999999999999999999999


Q ss_pred             cCCCccccccCccceEEecccccccc---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          250 APWKNVASLMGENSWHEVARPQVHGH---DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      |.-.+.          ....+..+..   ---..+|+|  |++++++|++||+|.+|+++ +..+..+++.
T Consensus       215 DAf~G~----------~~~tfs~~~~~~~~~~~a~ftP--ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  215 DAFDGT----------VKSTFSGYPNAGNLPLSATFTP--DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EccCCc----------EeeeEeeccCCCCcceeEEECC--CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            998887          2333333322   125677889  99999999999999999987 7777777764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.4e-28  Score=196.56  Aligned_cols=259  Identities=19%  Similarity=0.242  Sum_probs=214.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|..+.++|... +  +.+.+|+||...|+.+.|+        ++...+++++.|..|+||...... .......+.
T Consensus       236 TGG~d~~av~~d~~s-~--q~l~~~~Gh~kki~~v~~~--------~~~~~v~~aSad~~i~vws~~~~s-~~~~~~~h~  303 (506)
T KOG0289|consen  236 TGGEDKTAVLFDKPS-N--QILATLKGHTKKITSVKFH--------KDLDTVITASADEIIRVWSVPLSS-EPTSSRPHE  303 (506)
T ss_pred             ecCCCCceEEEecch-h--hhhhhccCcceEEEEEEec--------cchhheeecCCcceEEeecccccc-Ccccccccc
Confidence            689999999999988 6  5678999999999999999        889999999999999999987665 334455667


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe-----cccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL-----LIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      .++..+..+|.|.+++.++.++.+-+...     +..+     .-.+++.+|+      |||.+      |.+|..|+.|
T Consensus       304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH------pDgLi------fgtgt~d~~v  371 (506)
T KOG0289|consen  304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH------PDGLI------FGTGTPDGVV  371 (506)
T ss_pred             ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc------CCceE------EeccCCCceE
Confidence            78999999999999999998887644322     1112     2348999999      89999      9999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDIS  229 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~  229 (351)
                      +|||+.+  +..+..|.     +|.++|..+.|+.+|-+|++++.|+.|++||++..+     ..+++.-. ...+.+++
T Consensus       372 kiwdlks--~~~~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~  439 (506)
T KOG0289|consen  372 KIWDLKS--QTNVAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLS  439 (506)
T ss_pred             EEEEcCC--ccccccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEE
Confidence            9999998  55555554     899999999999999999999999999999999863     34443322 23699999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      |.+.|.+|+.++.|=.|++++-.+        +.|.++..+..|.+..+++.|..  ..++++++|.|..++++.+
T Consensus       440 fD~SGt~L~~~g~~l~Vy~~~k~~--------k~W~~~~~~~~~sg~st~v~Fg~--~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  440 FDQSGTYLGIAGSDLQVYICKKKT--------KSWTEIKELADHSGLSTGVRFGE--HAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EcCCCCeEEeecceeEEEEEeccc--------ccceeeehhhhcccccceeeecc--cceEEeeccchhheEEeec
Confidence            999999999998776666665433        46899999888988899999988  8899999999999998864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=8.3e-28  Score=207.63  Aligned_cols=278  Identities=17%  Similarity=0.186  Sum_probs=210.7

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeC-Cccc--CCCCCccEEEEeeCCCcEEEEecCCCcccce----e
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSL-PVCT--SGEAISILLVSSSQDKVIRIWKLALRGSSAN----T   75 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~--~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~----~   75 (351)
                      ..|.+|+|||++...+.-....+--|...|+.+.--| ..+.  .+---...+.||+.|++||+|++.....-..    +
T Consensus       343 YndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi  422 (1080)
T KOG1408|consen  343 YNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI  422 (1080)
T ss_pred             EcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeeccc
Confidence            3688999999998665556666777999999998763 1000  0001124699999999999999975221111    0


Q ss_pred             ec--------------------------------ccccceeeeEeeecCCeEEecCCceeEEEEEe--------cccccc
Q 048511           76 QS--------------------------------TYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHED  115 (351)
Q Consensus        76 ~~--------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~  115 (351)
                      ..                                .....+.+++.+|+|+.|++|+..+.+++...        +..|..
T Consensus       423 ls~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes  502 (1080)
T KOG1408|consen  423 LSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES  502 (1080)
T ss_pred             chhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc
Confidence            00                                00445789999999999999999999877653        568999


Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce----------EEEEEe-----------------
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW----------MNVVTV-----------------  168 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------~~~~~~-----------------  168 (351)
                      .|.|+.|+-..   -..++      ||+++.|+.|+|||+... ...          +..+++                 
T Consensus       503 EilcLeyS~p~---~~~kL------LASasrdRlIHV~Dv~rn-y~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  503 EILCLEYSFPV---LTNKL------LASASRDRLIHVYDVKRN-YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             eeEEEeecCch---hhhHh------hhhccCCceEEEEecccc-cchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence            99999999422   12356      999999999999998741 000          000000                 


Q ss_pred             -----------------ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccEEEE
Q 048511          169 -----------------GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAVMDI  228 (351)
Q Consensus       169 -----------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v~~v  228 (351)
                                       .........++.++..|..+++++++.|..|+|||+..++     ..+.++   +|++..-.+
T Consensus       573 imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-----q~k~FKgs~~~eG~lIKv  647 (1080)
T KOG1408|consen  573 IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-----QVKSFKGSRDHEGDLIKV  647 (1080)
T ss_pred             hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc-----eeeeecccccCCCceEEE
Confidence                             0001113457888999999999999999999999999884     345554   467778889


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ...|.|.||++.+.|+++.++|+-+++          .+....+|...|+.+.|.+  |-+.|++.+.||+|.||.++.
T Consensus       648 ~lDPSgiY~atScsdktl~~~Df~sgE----------cvA~m~GHsE~VTG~kF~n--DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  648 ILDPSGIYLATSCSDKTLCFVDFVSGE----------CVAQMTGHSEAVTGVKFLN--DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EECCCccEEEEeecCCceEEEEeccch----------hhhhhcCcchheeeeeecc--cchhheeecCCceEEEEECch
Confidence            999999999999999999999999988          7888889999999999999  999999999999999999883

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=193.17  Aligned_cols=252  Identities=15%  Similarity=0.188  Sum_probs=202.9

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      .+.+|..|++.|.+++.+        |+.++++||+.|..-.+|++.++... .....+...+.++.|+.+|.+|++|+.
T Consensus        56 S~~tF~~H~~svFavsl~--------P~~~l~aTGGgDD~AflW~~~~ge~~-~eltgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLH--------PNNNLVATGGGDDLAFLWDISTGEFA-GELTGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             ceeehhhcCCceEEEEeC--------CCCceEEecCCCceEEEEEccCCcce-eEecCCCCceEEEEEccCceEEEecCC
Confidence            457899999999999999        78889999999999999999998843 444566789999999999999999999


Q ss_pred             ceeEEEEEeccccc--------cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          101 SYQVSVESLLIGHE--------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       101 ~~~~~~~~~~~~h~--------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                      ++.+.++..-.++.        ..+.-+.|+      |.+.+      |+.|+.||.+-+|.+.+  +...+.+.     
T Consensus       127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WH------p~a~i------llAG~~DGsvWmw~ip~--~~~~kv~~-----  187 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH------PRAHI------LLAGSTDGSVWMWQIPS--QALCKVMS-----  187 (399)
T ss_pred             CccEEEEEcccCceEEEeecccCceEEEEec------ccccE------EEeecCCCcEEEEECCC--cceeeEec-----
Confidence            99998887655543        345567888      67778      99999999999999998  55555555     


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---------------------------------
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---------------------------------  219 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---------------------------------  219 (351)
                      +|..++++-.|.|+|+.++++..||+|++|++.++..     +..+.                                 
T Consensus       188 Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  188 GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             CCCCCcccccccCCCceEEEEecCceEEEEecCCCce-----eEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence            8999999999999999999999999999999988732     11111                                 


Q ss_pred             ------------------cccccEEEEEeec---CCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511          220 ------------------GHFAAVMDISWSR---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN  278 (351)
Q Consensus       220 ------------------~~~~~v~~v~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (351)
                                        .+...+.+|.+.|   .-.+.|+|+.||+|.|||+....           ++..-.|...|+
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----------~R~~c~he~~V~  331 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----------LRHICEHEDGVT  331 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----------hheeccCCCceE
Confidence                              1122223333333   34677899999999999996654           233336778899


Q ss_pred             EEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          279 CVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      .+.|.+   ..+|++++.||.|+.||.+ |+++.++.+|...
T Consensus       332 ~l~w~~---t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~  370 (399)
T KOG0296|consen  332 KLKWLN---TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG  370 (399)
T ss_pred             EEEEcC---cchheeeccCceEEeeeccccceEEEEecCchh
Confidence            999987   6789999999999999987 9888888887643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.5e-28  Score=192.72  Aligned_cols=265  Identities=17%  Similarity=0.243  Sum_probs=209.0

Q ss_pred             CCCCCceEEEEEccC---------------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511            1 MGGLDNKIHLYRGQR---------------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus         1 tg~~dg~i~vw~~~~---------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      ||+.|.+|+|.|++.               +.....+++|..|.++|+++.|+        |....|++++.|++|+++|
T Consensus       129 TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH--------Pre~ILiS~srD~tvKlFD  200 (430)
T KOG0640|consen  129 TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH--------PRETILISGSRDNTVKLFD  200 (430)
T ss_pred             ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec--------chhheEEeccCCCeEEEEe
Confidence            699999999999882               12224578899999999999999        8899999999999999999


Q ss_pred             cCCCcccceeec-ccccceeeeEeeecCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCc
Q 048511           66 LALRGSSANTQS-TYRKEVISLASYIEGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        66 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                      +........... ....++.++.|+|.|.++++|.....+++...           -.+|++.|+++.++      +.++
T Consensus       201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys------~t~~  274 (430)
T KOG0640|consen  201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS------STGS  274 (430)
T ss_pred             cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEec------CCcc
Confidence            986643322211 12457899999999999999987766654432           34699999999999      7899


Q ss_pred             ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc
Q 048511          134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  213 (351)
                      +      .++++.||.|++||--+  +.++.++..   ......|.+..|..+++++++++.|..+++|.+.++     .
T Consensus       275 l------YvTaSkDG~IklwDGVS--~rCv~t~~~---AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-----R  338 (430)
T KOG0640|consen  275 L------YVTASKDGAIKLWDGVS--NRCVRTIGN---AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-----R  338 (430)
T ss_pred             E------EEEeccCCcEEeecccc--HHHHHHHHh---hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-----c
Confidence            9      99999999999999888  777777652   233457999999999999999999999999999988     4


Q ss_pred             ccccccccc-----ccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511          214 PQKVPSGHF-----AAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG  287 (351)
Q Consensus       214 ~~~~~~~~~-----~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (351)
                      ++..+.+-.     .--+...|+....+++.-.+ .+.+.-||.++...         ......+|.+.+.++.-+|  .
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr---------~~l~slgHn~a~R~i~HSP--~  407 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR---------VALLSLGHNGAVRWIVHSP--V  407 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh---------hhhcccCCCCCceEEEeCC--C
Confidence            455554421     11234567777778766544 47899999998762         1122348999999999999  8


Q ss_pred             CcEEEEecCCCeEEEEecC
Q 048511          288 NHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       288 ~~~l~s~~~dg~v~vw~~~  306 (351)
                      +.-++++++|..+|+|-..
T Consensus       408 ~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  408 EPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceeeecccceeeeeeec
Confidence            8999999999999999643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1e-27  Score=184.21  Aligned_cols=220  Identities=18%  Similarity=0.256  Sum_probs=187.8

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      .++||..+++.|.|+        .+|++|+||+.|.+..+|-..+++.+                               
T Consensus         5 ~l~GHERplTqiKyN--------~eGDLlFscaKD~~~~vw~s~nGerl-------------------------------   45 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYN--------REGDLLFSCAKDSTPTVWYSLNGERL-------------------------------   45 (327)
T ss_pred             ccccCccccceEEec--------CCCcEEEEecCCCCceEEEecCCcee-------------------------------
Confidence            578999999999999        89999999999999999988777554                               


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                          -++.||++.|+|+...      .+...      +++|+.|.++++||+++  |+.+..++      ...+|..+.|
T Consensus        46 ----Gty~GHtGavW~~Did------~~s~~------liTGSAD~t~kLWDv~t--Gk~la~~k------~~~~Vk~~~F  101 (327)
T KOG0643|consen   46 ----GTYDGHTGAVWCCDID------WDSKH------LITGSADQTAKLWDVET--GKQLATWK------TNSPVKRVDF  101 (327)
T ss_pred             ----eeecCCCceEEEEEec------CCcce------eeeccccceeEEEEcCC--CcEEEEee------cCCeeEEEee
Confidence                4568999999999999      78888      99999999999999999  88887775      4567999999


Q ss_pred             cCCCCEEEEEee-----CCeEEEEEcccCc--ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          184 SPDGRSILAHGY-----GGAFHLWRNVGVD--IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       184 ~~~~~~l~~~~~-----dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                      +++|++++.+..     .+.|.++|++...  .....+...+..+.+.++.+-|.|-+++|++|.+||.|.+||.+++. 
T Consensus       102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-  180 (327)
T KOG0643|consen  102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-  180 (327)
T ss_pred             ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-
Confidence            999998877654     4679999997432  11124566777788999999999999999999999999999999986 


Q ss_pred             cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                              ..+...+.|...|+.+.+++  +..++++++.|.+.++||.. -.+++++....
T Consensus       181 --------~~v~s~~~h~~~Ind~q~s~--d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~  232 (327)
T KOG0643|consen  181 --------ELVDSDEEHSSKINDLQFSR--DRTYFITGSKDTTAKLVDVRTLEVLKTYTTER  232 (327)
T ss_pred             --------eeeechhhhccccccccccC--CcceEEecccCccceeeeccceeeEEEeeecc
Confidence                    25666678999999999999  99999999999999999976 66666665544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=193.41  Aligned_cols=239  Identities=17%  Similarity=0.234  Sum_probs=184.0

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ...+..|.+++.+.+|+        ++|.++|||+.|..|+|.|++..-......                 .+..++..
T Consensus       105 t~ylt~HK~~cR~aafs--------~DG~lvATGsaD~SIKildvermlaks~~~-----------------em~~~~~q  159 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFS--------PDGSLVATGSADASIKILDVERMLAKSKPK-----------------EMISGDTQ  159 (430)
T ss_pred             eEEEeecccceeeeeeC--------CCCcEEEccCCcceEEEeehhhhhhhcchh-----------------hhccCCcc
Confidence            35677899999999999        899999999999999999997321110000                 01111222


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                      ..-.+++++..|.++|+++.|+      |...+      |++|+.|++|++||+...  ...+.++.   -....+|.++
T Consensus       160 a~hPvIRTlYDH~devn~l~FH------Pre~I------LiS~srD~tvKlFDfsK~--saKrA~K~---~qd~~~vrsi  222 (430)
T KOG0640|consen  160 ARHPVIRTLYDHVDEVNDLDFH------PRETI------LISGSRDNTVKLFDFSKT--SAKRAFKV---FQDTEPVRSI  222 (430)
T ss_pred             cCCceEeehhhccCcccceeec------chhhe------EEeccCCCeEEEEecccH--HHHHHHHH---hhccceeeeE
Confidence            2235678899999999999999      56678      999999999999999872  22222221   1345579999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE  261 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  261 (351)
                      .|+|.|.+|++|..-..+++||+++-+.  +.....-..|.+.|++|.+++.+++.++++.||.|+|||--..+      
T Consensus       223 SfHPsGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r------  294 (430)
T KOG0640|consen  223 SFHPSGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR------  294 (430)
T ss_pred             eecCCCceEEEecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH------
Confidence            9999999999999999999999998632  11122334689999999999999999999999999999987776      


Q ss_pred             cceEEeccc-cccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          262 NSWHEVARP-QVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       262 ~~~~~~~~~-~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                          ++..+ .+|+ ..|.+..|..  ++++|++.+.|..|++|.+. +..++++.+.
T Consensus       295 ----Cv~t~~~AH~gsevcSa~Ftk--n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  295 ----CVRTIGNAHGGSEVCSAVFTK--NGKYILSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             ----HHHHHHhhcCCceeeeEEEcc--CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence                33322 2455 4588899998  99999999999999999987 7777776655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.6e-27  Score=184.66  Aligned_cols=259  Identities=15%  Similarity=0.196  Sum_probs=202.1

Q ss_pred             CCCCCceEEEEEccCCC---------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc
Q 048511            1 MGGLDNKIHLYRGQRTG---------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS   71 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~   71 (351)
                      +|++...|.-+++....         .+.++..+.+|.++|++++.+          +.++||||.|-+|+|||+.+...
T Consensus         6 vGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----------~~~~aSGssDetI~IYDm~k~~q   75 (362)
T KOG0294|consen    6 VGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----------GPYVASGSSDETIHIYDMRKRKQ   75 (362)
T ss_pred             EeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----------ceeEeccCCCCcEEEEeccchhh
Confidence            36666677777655311         234577889999999999998          88999999999999999998877


Q ss_pred             cceeecccccceeeeEeeecCC--eEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           72 SANTQSTYRKEVISLASYIEGP--VLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      +..+... ...+.++.|.++-.  .|+++..++.+.+|        ..+++|.+.|+.++.+      |.+++      .
T Consensus        76 lg~ll~H-agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH------PS~KL------A  142 (362)
T KOG0294|consen   76 LGILLSH-AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH------PSGKL------A  142 (362)
T ss_pred             hcceecc-ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec------CCCce------E
Confidence            6655543 67788888888765  78888888877554        4688999999999999      68888      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ++.+.|+.+++||+-.  +.......+.    +  ....+.|+|.|.+++.+..++ |-+|.+.+..     ....+. .
T Consensus       143 LsVg~D~~lr~WNLV~--Gr~a~v~~L~----~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~-----v~~~i~-~  207 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVR--GRVAFVLNLK----N--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS-----VFREIE-N  207 (362)
T ss_pred             EEEcCCceeeeehhhc--CccceeeccC----C--cceeeEEcCCCCEEEEEeccE-EEEEecccHh-----Hhhhhh-c
Confidence            9999999999999998  5444444432    1  223499999999998887765 8899988753     233332 2


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      ...+.++.|- ++..|++|..|+.|.+||.....          +...+.+|...|..+.+-..+++.+|+++|.||.|+
T Consensus       208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~----------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~  276 (362)
T KOG0294|consen  208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT----------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK  276 (362)
T ss_pred             cccceeeeec-CCceEEEecCCceEEEeccCCCc----------cceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence            3456666665 45688999999999999998765          677788999999999966545789999999999999


Q ss_pred             EEecCch
Q 048511          302 VFEAPLS  308 (351)
Q Consensus       302 vw~~~~~  308 (351)
                      |||++.+
T Consensus       277 vWd~~~~  283 (362)
T KOG0294|consen  277 VWDIDME  283 (362)
T ss_pred             EEEcccc
Confidence            9998743

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.9e-27  Score=183.96  Aligned_cols=258  Identities=16%  Similarity=0.272  Sum_probs=192.8

Q ss_pred             CCCCCceEEEEEc-cCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRG-QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~-~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      ||+.|++|+|||. ...+.+.+....+.|.+.|..|.|.+|      .-|+.+|+++.|++++||.-........-    
T Consensus        30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------EfGqvvA~cS~Drtv~iWEE~~~~~~~~~----   99 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------EFGQVVATCSYDRTVSIWEEQEKSEEAHG----   99 (361)
T ss_pred             eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------cccceEEEEecCCceeeeeeccccccccc----
Confidence            6899999999994 445788999999999999999999954      45889999999999999975422111000    


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  159 (351)
                                            ........+......|++++|.|..    -|-.      +|+++.||.+|||+...  
T Consensus       100 ----------------------~~Wv~~ttl~DsrssV~DV~FaP~h----lGLk------lA~~~aDG~lRIYEA~d--  145 (361)
T KOG2445|consen  100 ----------------------RRWVRRTTLVDSRSSVTDVKFAPKH----LGLK------LAAASADGILRIYEAPD--  145 (361)
T ss_pred             ----------------------ceeEEEEEeecCCcceeEEEecchh----cceE------EEEeccCcEEEEEecCC--
Confidence                                  0112334556677889999999853    4556      99999999999999876  


Q ss_pred             cceEEEEEe--------ccccccccceEEEEEcCC---CCEEEEEeeC-----CeEEEEEcccCcccCcccccccccccc
Q 048511          160 GIWMNVVTV--------GELSHSALGFYGGHWSPD---GRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       160 ~~~~~~~~~--------~~~~~~~~~i~~i~~~~~---~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      ...+....+        .....+..+..|+.|+|.   ..+|++|+.+     +.+.||....+. +.+..+.++.+|..
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-rKw~kva~L~d~~d  224 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-RKWLKVAELPDHTD  224 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-ceeeeehhcCCCCC
Confidence            222221111        122345667889999974   4577877766     578899876543 22566778889999


Q ss_pred             cEEEEEeecC----CCEEEEEeCCCcEEEEcCCCccc----------cccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          224 AVMDISWSRS----SDYLLSVSHDQTTRVFAPWKNVA----------SLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       224 ~v~~v~~sp~----~~~l~s~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                      +|++++|.|+    -.+||+++.|| |+||.+.....          ..+..-..+.+..+..|...|+.+.|+-  .|.
T Consensus       225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm--tGt  301 (361)
T KOG2445|consen  225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM--TGT  301 (361)
T ss_pred             cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee--eee
Confidence            9999999995    35799999999 99999974221          0112234556777889999999999998  899


Q ss_pred             EEEEecCCCeEEEEecC
Q 048511          290 RFVSGADEKVARVFEAP  306 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~  306 (351)
                      .|++.|+||+||+|...
T Consensus       302 iLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  302 ILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeecCCCceeeehhhh
Confidence            99999999999999976

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.4e-28  Score=213.11  Aligned_cols=209  Identities=20%  Similarity=0.304  Sum_probs=164.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      +++..|.||.+.|..|.|+        . ..+|+|+|.|.+||+|++....++..+                        
T Consensus       360 kP~~ef~GHt~DILDlSWS--------K-n~fLLSSSMDKTVRLWh~~~~~CL~~F------------------------  406 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWS--------K-NNFLLSSSMDKTVRLWHPGRKECLKVF------------------------  406 (712)
T ss_pred             cchhhhhccchhheecccc--------c-CCeeEeccccccEEeecCCCcceeeEE------------------------
Confidence            3456789999999999999        4 569999999999999999987776433                        


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                                  .|.+.|+|++|+|     .|.++      |++|+-|+.|+||++..  .+.+.-.      .-...|+
T Consensus       407 ------------~HndfVTcVaFnP-----vDDry------FiSGSLD~KvRiWsI~d--~~Vv~W~------Dl~~lIT  455 (712)
T KOG0283|consen  407 ------------SHNDFVTCVAFNP-----VDDRY------FISGSLDGKVRLWSISD--KKVVDWN------DLRDLIT  455 (712)
T ss_pred             ------------ecCCeeEEEEecc-----cCCCc------EeecccccceEEeecCc--CeeEeeh------hhhhhhe
Confidence                        3999999999999     88899      99999999999999987  4433322      3346799


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc-----ccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCC
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW-----QPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~  253 (351)
                      +++|.|+|++.++|+.+|.+++|+....+...-     +..+.. .|. .|+++.|.|... .+++.+.|..|||||.+.
T Consensus       456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK-QGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD  533 (712)
T ss_pred             eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc-cCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence            999999999999999999999999877532100     000111 133 799999998543 466677899999999977


Q ss_pred             ccccccCccceEEecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          254 NVASLMGENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..          .+..++++..  .-....|+.  ||.+|+++++|..|++|+.+
T Consensus       534 ~~----------lv~KfKG~~n~~SQ~~Asfs~--Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  534 KD----------LVHKFKGFRNTSSQISASFSS--DGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             hh----------hhhhhcccccCCcceeeeEcc--CCCEEEEeecCceEEEEeCC
Confidence            76          4555554432  234667888  99999999999999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=7.9e-28  Score=213.32  Aligned_cols=223  Identities=20%  Similarity=0.356  Sum_probs=189.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|.+++|||..+ |  .+...+.+|.+.|.++...          ..++++|+.|.+|++|++.++..+        
T Consensus       266 sgS~D~t~rvWd~~s-g--~C~~~l~gh~stv~~~~~~----------~~~~~sgs~D~tVkVW~v~n~~~l--------  324 (537)
T KOG0274|consen  266 SGSTDKTERVWDCST-G--ECTHSLQGHTSSVRCLTID----------PFLLVSGSRDNTVKVWDVTNGACL--------  324 (537)
T ss_pred             EEecCCcEEeEecCC-C--cEEEEecCCCceEEEEEcc----------CceEeeccCCceEEEEeccCcceE--------
Confidence            588999999999888 7  6788999999999999887          568899999999999999976544        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 ..+.+|.++|.++...        +.+      +++|+.|++|++||+.+  +
T Consensus       325 ---------------------------~l~~~h~~~V~~v~~~--------~~~------lvsgs~d~~v~VW~~~~--~  361 (537)
T KOG0274|consen  325 ---------------------------NLLRGHTGPVNCVQLD--------EPL------LVSGSYDGTVKVWDPRT--G  361 (537)
T ss_pred             ---------------------------EEeccccccEEEEEec--------CCE------EEEEecCceEEEEEhhh--c
Confidence                                       4556799999999977        445      99999999999999998  8


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      +++..+.     +|...|+++.+.+. ..+++|+.|++|++||+++..    +++..+.+|...+..+.+  .+++|+++
T Consensus       362 ~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~l~~--~~~~Lvs~  429 (537)
T KOG0274|consen  362 KCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSSLLL--RDNFLVSS  429 (537)
T ss_pred             eeeeeec-----CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhhhhcCCccccccccc--ccceeEec
Confidence            8888887     89999999988665 899999999999999999963    579999999988866655  56789999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      +.|+.|++||..+++          .+..+.+ |...|+.+++.    ...+++++.||.+++||++ +...+.+
T Consensus       430 ~aD~~Ik~WD~~~~~----------~~~~~~~~~~~~v~~l~~~----~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  430 SADGTIKLWDAEEGE----------CLRTLEGRHVGGVSALALG----KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             cccccEEEeecccCc----------eeeeeccCCcccEEEeecC----cceEEEEecCCeeEEEecccCchhhhh
Confidence            999999999998887          4444444 55667777664    3689999999999999987 7777665

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=195.96  Aligned_cols=241  Identities=21%  Similarity=0.291  Sum_probs=192.0

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+.|.+++|+ |.+|     -++.+|+|  -.+.||+..+......+ ......+.+..|..||+++++|+..+.+++..
T Consensus        26 ~~~vssl~fs-p~~P-----~d~aVt~S--~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD   96 (487)
T KOG0310|consen   26 HNSVSSLCFS-PKHP-----YDFAVTSS--VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFD   96 (487)
T ss_pred             cCcceeEecC-CCCC-----CceEEecc--cEEEEEecchhhhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEec
Confidence            4689999999 2222     23444444  46999998876554433 23356788999999999999999999998765


Q ss_pred             --------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511          109 --------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       109 --------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  180 (351)
                              .+.+|+.+|..+.|+|     .++..      |++|+.|+.+++||+.+  ......     +.+|+..|.|
T Consensus        97 ~k~r~iLR~~~ah~apv~~~~f~~-----~d~t~------l~s~sDd~v~k~~d~s~--a~v~~~-----l~~htDYVR~  158 (487)
T KOG0310|consen   97 MKSRVILRQLYAHQAPVHVTKFSP-----QDNTM------LVSGSDDKVVKYWDLST--AYVQAE-----LSGHTDYVRC  158 (487)
T ss_pred             cccHHHHHHHhhccCceeEEEecc-----cCCeE------EEecCCCceEEEEEcCC--cEEEEE-----ecCCcceeEe
Confidence                    3668999999999998     67778      99999999999999998  443222     3489999999


Q ss_pred             EEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511          181 GHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       181 i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      .+|+|.. ..+++|+.||.|++||++...    ..+.++ .|..+|..+.+-|.|..+++++. ..|+|||+.++.    
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~----  228 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG----  228 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC----ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----
Confidence            9999965 488999999999999998863    234455 48899999999999999998874 589999998665    


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                           +.+.....|...|+|+.+..  ++..|++|+-|+.|++||.. -+.+..+
T Consensus       229 -----qll~~~~~H~KtVTcL~l~s--~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  229 -----QLLTSMFNHNKTVTCLRLAS--DSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             -----eehhhhhcccceEEEEEeec--CCceEeecccccceEEEEccceEEEEee
Confidence                 25555556999999999998  89999999999999999955 4444444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.5e-27  Score=186.26  Aligned_cols=222  Identities=17%  Similarity=0.211  Sum_probs=167.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +||.||+||+|+++..|.+.. .....|.++|.+++|+        .+|..+++|+.|+.+++||+.+++...       
T Consensus        45 A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Ws--------ddgskVf~g~~Dk~~k~wDL~S~Q~~~-------  108 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWS--------DDGSKVFSGGCDKQAKLWDLASGQVSQ-------  108 (347)
T ss_pred             ecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEc--------cCCceEEeeccCCceEEEEccCCCeee-------
Confidence            478999999999998565544 5667899999999999        899999999999999999999885432       


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                   +..|..+|.++.|-+..    ....      |++||.|++|+.||.+.  .
T Consensus       109 -----------------------------v~~Hd~pvkt~~wv~~~----~~~c------l~TGSWDKTlKfWD~R~--~  147 (347)
T KOG0647|consen  109 -----------------------------VAAHDAPVKTCHWVPGM----NYQC------LVTGSWDKTLKFWDTRS--S  147 (347)
T ss_pred             -----------------------------eeecccceeEEEEecCC----Ccce------eEecccccceeecccCC--C
Confidence                                         34477788888877321    1224      78888888888888776  3


Q ss_pred             ceEEEEEecc------------------------------------ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511          161 IWMNVVTVGE------------------------------------LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN  204 (351)
Q Consensus       161 ~~~~~~~~~~------------------------------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~  204 (351)
                      ..+.++.+.+                                    .....-.++|++..++....+.|+.+|.+.+..+
T Consensus       148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i  227 (347)
T KOG0647|consen  148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI  227 (347)
T ss_pred             CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence            3333222111                                    0112345788998888888899999999999998


Q ss_pred             ccCcccCccccccccccc---------ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc
Q 048511          205 VGVDIDNWQPQKVPSGHF---------AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH  275 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~---------~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      .....   +.-.+++.|.         ..|++|+|+|....|+|++.||++.+||-..+.          .+...+.|..
T Consensus       228 d~~~~---~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~----------kLk~s~~~~q  294 (347)
T KOG0647|consen  228 DDPNP---KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART----------KLKTSETHPQ  294 (347)
T ss_pred             CCCCc---cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh----------hhhccCcCCC
Confidence            77422   1122333343         357889999999999999999999999987766          5666678899


Q ss_pred             ceeEEEEeeeCCCcEEEEe
Q 048511          276 DINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~  294 (351)
                      +|+|++|+.  +|.++|-+
T Consensus       295 pItcc~fn~--~G~ifaYA  311 (347)
T KOG0647|consen  295 PITCCSFNR--NGSIFAYA  311 (347)
T ss_pred             ccceeEecC--CCCEEEEE
Confidence            999999999  88888744

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=193.56  Aligned_cols=255  Identities=18%  Similarity=0.141  Sum_probs=203.5

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecccccceeeeEeeecCCeEEe
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGPVLVA   97 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~   97 (351)
                      +....+..|++.|+.+.|+        ++|++|||++.|.+..+|++.....  +.....++..++..+.|+||.+++++
T Consensus       215 qt~qil~~htdEVWfl~FS--------~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla  286 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFS--------HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA  286 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEc--------CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence            3456788999999999999        8999999999999999999876554  23344456778899999999999999


Q ss_pred             cCCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511           98 GSSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV  168 (351)
Q Consensus        98 ~~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  168 (351)
                      ++.+..+.+|....         +|...+.+++|.      ||+..      +++|+.|+++..||+...   .....+ 
T Consensus       287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~------pDg~~------~V~Gs~dr~i~~wdlDgn---~~~~W~-  350 (519)
T KOG0293|consen  287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC------PDGFR------FVTGSPDRTIIMWDLDGN---ILGNWE-  350 (519)
T ss_pred             cCchHheeeccCCcchhhhhcccCcCCCcceeEEc------cCCce------eEecCCCCcEEEecCCcc---hhhccc-
Confidence            88777777765422         345789999999      78888      999999999999999852   222222 


Q ss_pred             ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511          169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV  248 (351)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v  248 (351)
                         ......|.+++..+||+++++.+.|..|++|+.++..     ... +.....+|++++.|.+++++++.=.+..+++
T Consensus       351 ---gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----dr~-lise~~~its~~iS~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  351 ---GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHL  421 (519)
T ss_pred             ---ccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-----hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence               0122458999999999999999999999999998752     122 3334568999999999999999889999999


Q ss_pred             EcCCCccccccCccceEEeccccccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      ||++...          .+.++.+|...  +..-+|-. .+..++++||+|+.|+||+.. ++.+.+|.+|..
T Consensus       422 WDl~e~~----------lv~kY~Ghkq~~fiIrSCFgg-~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  422 WDLEENK----------LVRKYFGHKQGHFIIRSCFGG-GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             eecchhh----------HHHHhhcccccceEEEeccCC-CCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence            9998655          67777777654  44444544 356899999999999999975 999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=197.59  Aligned_cols=224  Identities=20%  Similarity=0.248  Sum_probs=186.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+..|.|+|||..+ .  ..+..+.+|+.+|..+.|+    |   .++..|++|+.|+.+++||+.+...         
T Consensus        85 aGD~sG~V~vfD~k~-r--~iLR~~~ah~apv~~~~f~----~---~d~t~l~s~sDd~v~k~~d~s~a~v---------  145 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKS-R--VILRQLYAHQAPVHVTKFS----P---QDNTMLVSGSDDKVVKYWDLSTAYV---------  145 (487)
T ss_pred             ccCCcCcEEEecccc-H--HHHHHHhhccCceeEEEec----c---cCCeEEEecCCCceEEEEEcCCcEE---------
Confidence            478889999999554 3  4577899999999999999    4   5677889999999999999987642         


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                ...+.+|++.|.|.+|+|     .++.+      ++|||.||.|++||++... 
T Consensus       146 --------------------------~~~l~~htDYVR~g~~~~-----~~~hi------vvtGsYDg~vrl~DtR~~~-  187 (487)
T KOG0310|consen  146 --------------------------QAELSGHTDYVRCGDISP-----ANDHI------VVTGSYDGKVRLWDTRSLT-  187 (487)
T ss_pred             --------------------------EEEecCCcceeEeecccc-----CCCeE------EEecCCCceEEEEEeccCC-
Confidence                                      134688999999999998     66778      9999999999999999842 


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      .++..+      .|..+|..+.+-|.|..+++++. ..+++||+-++.    +.+..+..|...|+|+++..++..|+++
T Consensus       188 ~~v~el------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~----qll~~~~~H~KtVTcL~l~s~~~rLlS~  256 (487)
T KOG0310|consen  188 SRVVEL------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG----QLLTSMFNHNKTVTCLRLASDSTRLLSG  256 (487)
T ss_pred             ceeEEe------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----eehhhhhcccceEEEEEeecCCceEeec
Confidence            444444      57889999999999998888765 469999998764    5566666699999999999999999999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +-|+.|++||+.+-+          .+.... -.++|.+++.+|  +++.++.|..||.+.+=+.
T Consensus       257 sLD~~VKVfd~t~~K----------vv~s~~-~~~pvLsiavs~--dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  257 SLDRHVKVFDTTNYK----------VVHSWK-YPGPVLSIAVSP--DDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             ccccceEEEEccceE----------EEEeee-cccceeeEEecC--CCceEEEecccceeeeehh
Confidence            999999999975544          555543 346799999999  9999999999999887743

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.5e-26  Score=169.69  Aligned_cols=248  Identities=18%  Similarity=0.187  Sum_probs=191.3

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc----eeecccccceeeeEeeec----CCe
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA----NTQSTYRKEVISLASYIE----GPV   94 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~   94 (351)
                      ..-+.|.+.|.|.+|+        +.|++|+||+.|++|++.-++...+..    .....+...+..++|-.+    +.+
T Consensus        83 kr~khhkgsiyc~~ws--------~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i  154 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWS--------PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI  154 (350)
T ss_pred             eeccccCccEEEEEec--------CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence            3446789999999999        899999999999999998876554321    112234567778887543    445


Q ss_pred             EEec-CCceeEE--------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511           95 LVAG-SSSYQVS--------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus        95 l~~~-~~~~~~~--------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  165 (351)
                      |+++ ..+..+.        -...+.+|++-|.++- +      .++.+      +++|+.|.+|++||++-  ..++.+
T Consensus       155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-s------wn~~m------~~sgsqdktirfwdlrv--~~~v~~  219 (350)
T KOG0641|consen  155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-S------WNGAM------FASGSQDKTIRFWDLRV--NSCVNT  219 (350)
T ss_pred             EEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-E------ecCcE------EEccCCCceEEEEeeec--cceeee
Confidence            5543 3444443        2455789999888874 2      35677      99999999999999998  666665


Q ss_pred             EEeccc--cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          166 VTVGEL--SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       166 ~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      +.....  .-....|..++..|.|+.|++|-.|....+||++.+     .+++.+..|...|.++.|+|...|+++++.|
T Consensus       220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~-----r~iq~f~phsadir~vrfsp~a~yllt~syd  294 (350)
T KOG0641|consen  220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-----RMIQRFHPHSADIRCVRFSPGAHYLLTCSYD  294 (350)
T ss_pred             ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC-----ceeeeeCCCccceeEEEeCCCceEEEEeccc
Confidence            542211  112356899999999999999999999999999998     6799999999999999999999999999999


Q ss_pred             CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..|++-|++..-..+     + ++.....|...+..+.|+|  ...-+++.+.|.++.+|-++
T Consensus       295 ~~ikltdlqgdla~e-----l-~~~vv~ehkdk~i~~rwh~--~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  295 MKIKLTDLQGDLAHE-----L-PIMVVAEHKDKAIQCRWHP--QDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEeecccchhhc-----C-ceEEEEeccCceEEEEecC--ccceeeeccCcceEEEeccC
Confidence            999999997653211     1 2233345777788889999  77889999999999999865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=5.3e-27  Score=201.88  Aligned_cols=252  Identities=21%  Similarity=0.294  Sum_probs=207.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeE-EEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRS-LDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +||.||++++|+-.. +++.....+.+|.+.|.+ ++|.    +   .++.+|++|+.|++|.+|......+...+ ..+
T Consensus        30 s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~----e---~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH  100 (745)
T KOG0301|consen   30 SGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYA----E---SDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGH  100 (745)
T ss_pred             ecCCCCceeeeeccC-cccccceecccCcceeeccceec----c---ccCcceEeecccceEEEEecCCCCchhhh-hcc
Confidence            478999999999988 777777889999998888 8887    2   34557999999999999999887665544 345


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEE------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ...+.++....++. +++|+.+...++|.      .+.+|+..|++++..|      +. .      ++||+.|.+|++|
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~------e~-~------~vTgsaDKtIklW  166 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLP------EN-T------YVTGSADKTIKLW  166 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecC------CC-c------EEeccCcceeeec
Confidence            56777777777777 88999998888775      4889999999999994      44 5      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      .-.    ..++++.     +|..-|+.+++-+++ .+++++.||.|++|++..      .++..+.+|...|++++..++
T Consensus       167 k~~----~~l~tf~-----gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~~~~ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  167 KGG----TLLKTFS-----GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLLEMHGHTNFVYSISMALS  230 (745)
T ss_pred             cCC----chhhhhc-----cchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceeeeeeccceEEEEEEecCC
Confidence            863    4455555     899999999998764 488999999999999955      468899999999999998888


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +..++++++|++++||+..  .          ....+...+..|+++.+.+  +| -|++|+.||.||||...
T Consensus       231 ~~~Ivs~gEDrtlriW~~~--e----------~~q~I~lPttsiWsa~~L~--Ng-DIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD--E----------CVQVITLPTTSIWSAKVLL--NG-DIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCeEEEecCCceEEEeecC--c----------eEEEEecCccceEEEEEee--CC-CEEEeccCceEEEEEec
Confidence            8899999999999999975  2          3333334455799999988  44 58899999999999865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=196.21  Aligned_cols=257  Identities=16%  Similarity=0.190  Sum_probs=202.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|..|++|++.. ++.....++.|-.++|+.+.|.        +++..+++++.|+.+++|++...+....+. ++.
T Consensus       192 tgg~Dr~Ik~W~v~~-~k~~~~~tLaGs~g~it~~d~d--------~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs-GHt  261 (459)
T KOG0288|consen  192 TGGSDRIIKLWNVLG-EKSELISTLAGSLGNITSIDFD--------SDNKHVIAASNDKNLRLWNVDSLRLRHTLS-GHT  261 (459)
T ss_pred             hcchhhhhhhhhccc-chhhhhhhhhccCCCcceeeec--------CCCceEEeecCCCceeeeeccchhhhhhhc-ccc
Confidence            688999999999998 6677788999999999999999        789999999999999999999876655444 477


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEecccc-------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+.++.|......++.+..+..++.|..-.+.       ...+..|...        ...      +++|..|+.|++|
T Consensus       262 dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--------~~~------~~SgH~DkkvRfw  327 (459)
T KOG0288|consen  262 DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--------ISD------VISGHFDKKVRFW  327 (459)
T ss_pred             cceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--------cee------eeecccccceEEE
Confidence            788888888877778888888888776542211       1123333332        122      8999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----ccccEEEEE
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----HFAAVMDIS  229 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~~~v~~v~  229 (351)
                      |.+.  ......+.     . .+.|+++..++++..+++++.|.++.++|+++.++     ...+.+    .....+.+.
T Consensus       328 D~Rs--~~~~~sv~-----~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  328 DIRS--ADKTRSVP-----L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             eccC--CceeeEee-----c-CcceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEeeccccccccccceeE
Confidence            9998  66666665     2 34799999999999999999999999999999754     222221    122378899


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      |||++.|+++|+.||.|+||++.+++..        .+.........|++++|+|  .|..+++++.++.+.+|.
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE--------~~l~~s~s~~aI~s~~W~~--sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLE--------KVLSLSTSNAAITSLSWNP--SGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEE--------EEeccCCCCcceEEEEEcC--CCchhhcccCCcceEecC
Confidence            9999999999999999999999998732        1222222222599999999  899999999999999994

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-27  Score=208.12  Aligned_cols=231  Identities=15%  Similarity=0.231  Sum_probs=184.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |++..|.|.+||+....+-..+..|..|+..|+++.|+    +   ....+|+|||+||+|++||++......       
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh----~---tep~iliSGSQDg~vK~~DlR~~~S~~-------  170 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFH----S---TEPNILISGSQDGTVKCWDLRSKKSKS-------  170 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhccceeeeeec----c---CCccEEEecCCCceEEEEeeecccccc-------
Confidence            57789999999998633335566788999999999999    2   345699999999999999998765442       


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                  ++.+....|..++|+|     ..+..      |+++...|.+.+||++.. .
T Consensus       171 ----------------------------t~~~nSESiRDV~fsp-----~~~~~------F~s~~dsG~lqlWDlRqp-~  210 (839)
T KOG0269|consen  171 ----------------------------TFRSNSESIRDVKFSP-----GYGNK------FASIHDSGYLQLWDLRQP-D  210 (839)
T ss_pred             ----------------------------cccccchhhhceeecc-----CCCce------EEEecCCceEEEeeccCc-h
Confidence                                        2345677899999998     66777      999999999999999973 2


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE-EEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLS  239 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s  239 (351)
                      .+...+     ..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+.   .+..++. ...+|..|+|-|+..+ |++
T Consensus       211 r~~~k~-----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~---~~~~tIn-Tiapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  211 RCEKKL-----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA---KPKHTIN-TIAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             hHHHHh-----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---cceeEEe-ecceeeeeeeccCccchhhh
Confidence            333333     38999999999999999999999999999999987654   3333333 3468999999997765 677


Q ss_pred             EeC--CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          240 VSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       240 ~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      ++.  |-.|+|||++..-         -+...+..|...++.++|.. .|...+.+++.||+|..-.
T Consensus       282 csmv~dtsV~VWDvrRPY---------IP~~t~~eH~~~vt~i~W~~-~d~~~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDVRRPY---------IPYATFLEHTDSVTGIAWDS-GDRINLWSCSKDGTVLQHL  338 (839)
T ss_pred             hhccccceEEEEeecccc---------ccceeeeccCccccceeccC-CCceeeEeecCccHHHHhh
Confidence            664  7899999997665         36667778999999999976 4678889999999886543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.1e-27  Score=180.34  Aligned_cols=217  Identities=20%  Similarity=0.342  Sum_probs=178.2

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV  104 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  104 (351)
                      -..|.+.|..+...        --|++||||+.|++|+|+..+.....                                
T Consensus         7 dt~H~D~IHda~lD--------yygkrlATcsSD~tVkIf~v~~n~~s--------------------------------   46 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLD--------YYGKRLATCSSDGTVKIFEVRNNGQS--------------------------------   46 (299)
T ss_pred             hhhhhhhhhHhhhh--------hhcceeeeecCCccEEEEEEcCCCCc--------------------------------
Confidence            34688889888777        67999999999999999999876542                                


Q ss_pred             EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511          105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS  184 (351)
Q Consensus       105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (351)
                      +++..|.||.++|+.++|.-.    .-|.+      ||+++.||.|.||.-+.  +.+.+..   ....|...|.+++|.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahP----k~G~i------LAScsYDgkVIiWke~~--g~w~k~~---e~~~h~~SVNsV~wa  111 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHP----KFGTI------LASCSYDGKVIIWKEEN--GRWTKAY---EHAAHSASVNSVAWA  111 (299)
T ss_pred             eeeeEecCCCCCeeEEeeccc----ccCcE------eeEeecCceEEEEecCC--Cchhhhh---hhhhhcccceeeccc
Confidence            344678999999999999721    47888      99999999999999887  5544333   245788999999999


Q ss_pred             CC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC---C-----------CEEEEEeCCCcEEE
Q 048511          185 PD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS---S-----------DYLLSVSHDQTTRV  248 (351)
Q Consensus       185 ~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~-----------~~l~s~~~dg~i~v  248 (351)
                      |.  |-.|++++.||.|.+.+.+...  .+...+....|.-.|++++|.|.   |           +.|++|+.|..|+|
T Consensus       112 pheygl~LacasSDG~vsvl~~~~~g--~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki  189 (299)
T KOG1332|consen  112 PHEYGLLLACASSDGKVSVLTYDSSG--GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI  189 (299)
T ss_pred             ccccceEEEEeeCCCcEEEEEEcCCC--CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence            85  5689999999999999997651  23455667789999999999995   4           56999999999999


Q ss_pred             EcCCCccccccCccceEEeccccccccceeEEEEeeeC--CCcEEEEecCCCeEEEEecC
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK--GNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+..+..        |..-..+.+|...|+.++|.|..  ...+||+++.||+|.||...
T Consensus       190 W~~~~~~--------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  190 WKFDSDS--------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             eecCCcc--------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            9998764        55556688999999999999932  24689999999999999865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-27  Score=203.64  Aligned_cols=215  Identities=15%  Similarity=0.273  Sum_probs=177.1

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      +.+++|+|||.||.|++|++.........                             .....++.|.++|+.+...   
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~-----------------------------~~~asme~HsDWVNDiiL~---   82 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPST-----------------------------PYIASMEHHSDWVNDIILC---   82 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCccc-----------------------------chhhhhhhhHhHHhhHHhh---
Confidence            67789999999999999998754322111                             0124567899999999998   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE-cCCCCEEEEEeeCCeEEEEEcc
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW-SPDGRSILAHGYGGAFHLWRNV  205 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~dg~i~~~d~~  205 (351)
                         .+++.      |+++|.|-+|++|+.....--++.++     ..|...|.|++. .++...+|+|+.|+.|.+||++
T Consensus        83 ---~~~~t------lIS~SsDtTVK~W~~~~~~~~c~sti-----r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   83 ---GNGKT------LISASSDTTVKVWNAHKDNTFCMSTI-----RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             ---cCCCc------eEEecCCceEEEeecccCcchhHhhh-----hcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence               78888      99999999999999987321344444     489999999999 7788899999999999999998


Q ss_pred             cCcc-----cCcccccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          206 GVDI-----DNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       206 ~~~~-----~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      ++..     ........+. ++...|++++.++.|..|++|+..+.+++||.++.+          .+.++++|...|.+
T Consensus       149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----------kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----------KIMKLRGHTDNVRV  218 (735)
T ss_pred             CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc----------ceeeeeccccceEE
Confidence            7632     1112233333 788899999999999999999999999999999988          77788899999999


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      +..++  ||..++++|.||+|++||+. +.++.++..|...
T Consensus       219 ll~~d--DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  219 LLVND--DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             EEEcC--CCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence            99998  99999999999999999998 8889888877643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.3e-27  Score=184.76  Aligned_cols=235  Identities=23%  Similarity=0.335  Sum_probs=194.7

Q ss_pred             EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511            8 IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA   87 (351)
Q Consensus         8 i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   87 (351)
                      |..|...+ -++..+..+.||.+.|+.++..        .....+.|++.|.+-+||.++++.++               
T Consensus       128 vssFk~~t-~~~~lvre~~GHkDGiW~Vaa~--------~tqpi~gtASADhTA~iWs~Esg~CL---------------  183 (481)
T KOG0300|consen  128 VSSFKDGT-VKFRLVRELEGHKDGIWHVAAD--------STQPICGTASADHTARIWSLESGACL---------------  183 (481)
T ss_pred             eeeecCCc-eeEeehhhhcccccceeeehhh--------cCCcceeecccccceeEEeeccccce---------------
Confidence            44454444 4567788899999999999988        66779999999999999999998765               


Q ss_pred             eeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc------CC---
Q 048511           88 SYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE------KT---  158 (351)
Q Consensus        88 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~------~~---  158 (351)
                                          ..+.||.+.|++++|+      +.+.+      +++++.|++.+||...      ..   
T Consensus       184 --------------------~~Y~GH~GSVNsikfh------~s~~L------~lTaSGD~taHIW~~av~~~vP~~~a~  231 (481)
T KOG0300|consen  184 --------------------ATYTGHTGSVNSIKFH------NSGLL------LLTASGDETAHIWKAAVNWEVPSNNAP  231 (481)
T ss_pred             --------------------eeecccccceeeEEec------cccce------EEEccCCcchHHHHHhhcCcCCCCCCC
Confidence                                3467899999999999      67788      9999999999999832      10   


Q ss_pred             ------------------------CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          159 ------------------------TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       159 ------------------------~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                                              ........++..+.+|...|.+..|-..|+.+++++.|.+-.+||++++     .+
T Consensus       232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-----e~  306 (481)
T KOG0300|consen  232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-----EV  306 (481)
T ss_pred             CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-----ce
Confidence                                    0000112334445688888999999999999999999999999999998     67


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      +..+.+|....+-++-+|..+++++.+.|.+.++||++..         +..+..+++|...|+++.|.-   +..+++|
T Consensus       307 v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------I~sV~VFQGHtdtVTS~vF~~---dd~vVSg  374 (481)
T KOG0300|consen  307 VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------IQSVAVFQGHTDTVTSVVFNT---DDRVVSG  374 (481)
T ss_pred             eccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------cceeeeecccccceeEEEEec---CCceeec
Confidence            9999999999999999999999999999999999999733         357788999999999999987   6789999


Q ss_pred             cCCCeEEEEecC--chhhhceee
Q 048511          295 ADEKVARVFEAP--LSFLKTLNH  315 (351)
Q Consensus       295 ~~dg~v~vw~~~--~~~~~~~~~  315 (351)
                      ++|.+|+|||+.  ...+.++..
T Consensus       375 SDDrTvKvWdLrNMRsplATIRt  397 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMRSPLATIRT  397 (481)
T ss_pred             CCCceEEEeeeccccCcceeeec
Confidence            999999999986  444555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.3e-26  Score=206.43  Aligned_cols=252  Identities=19%  Similarity=0.302  Sum_probs=193.7

Q ss_pred             CCC--CCceEEEEEccCC---------CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511            1 MGG--LDNKIHLYRGQRT---------GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus         1 tg~--~dg~i~vw~~~~~---------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   69 (351)
                      ||+  .||.++||+.+.-         .....+.+...|.+.|+|+.|+        ++|.+||+||.|+.|.||.....
T Consensus        30 TgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S--------~dG~~lAsGSDD~~v~iW~~~~~  101 (942)
T KOG0973|consen   30 TGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS--------PDGSYLASGSDDRLVMIWERAEI  101 (942)
T ss_pred             cCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC--------CCCCeEeeccCcceEEEeeeccc
Confidence            567  8999999986640         1134567788999999999999        89999999999999999998741


Q ss_pred             cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                       ......            ...|.    ....-..+....+.+|...|..++|+      |++.+      |++++.|++
T Consensus       102 -~~~~~f------------gs~g~----~~~vE~wk~~~~l~~H~~DV~Dv~Ws------p~~~~------lvS~s~Dns  152 (942)
T KOG0973|consen  102 -GSGTVF------------GSTGG----AKNVESWKVVSILRGHDSDVLDVNWS------PDDSL------LVSVSLDNS  152 (942)
T ss_pred             -CCcccc------------ccccc----ccccceeeEEEEEecCCCccceeccC------CCccE------EEEecccce
Confidence             100000            00000    00112335667789999999999999      78899      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc---------------------
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD---------------------  208 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~---------------------  208 (351)
                      |.|||.++  ...+..+.     +|...|..+.|+|-|++|++-+.|++|++|++..-.                     
T Consensus       153 Viiwn~~t--F~~~~vl~-----~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl  225 (942)
T KOG0973|consen  153 VIIWNAKT--FELLKVLR-----GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL  225 (942)
T ss_pred             EEEEcccc--ceeeeeee-----cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence            99999999  66666666     899999999999999999999999999999954310                     


Q ss_pred             --------------------------ccCcccccccccccccEEEEEeecC-----CC------------EEEEEeCCCc
Q 048511          209 --------------------------IDNWQPQKVPSGHFAAVMDISWSRS-----SD------------YLLSVSHDQT  245 (351)
Q Consensus       209 --------------------------~~~~~~~~~~~~~~~~v~~v~~sp~-----~~------------~l~s~~~dg~  245 (351)
                                                ...|+.-..+-+|.+++..+.|+|.     ..            .+|+|+.|++
T Consensus       226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS  305 (942)
T KOG0973|consen  226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS  305 (942)
T ss_pred             ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence                                      0123334456689999999999982     11            5789999999


Q ss_pred             EEEEcCCCccccccCccceEEec-cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          246 TRVFAPWKNVASLMGENSWHEVA-RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      |.||.....+          ++. ........|..++|+|  ||..|.++|.||.|.++.++.+
T Consensus       306 lSVW~T~~~R----------Pl~vi~~lf~~SI~DmsWsp--dG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  306 LSVWNTALPR----------PLFVIHNLFNKSIVDMSWSP--DGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEecCCCC----------chhhhhhhhcCceeeeeEcC--CCCeEEEEecCCeEEEEEcchH
Confidence            9999985554          221 1223456799999999  9999999999999999998733

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.2e-25  Score=199.29  Aligned_cols=230  Identities=17%  Similarity=0.235  Sum_probs=167.3

Q ss_pred             CCCCCceEEEEEccCCCce-----EEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccce
Q 048511            1 MGGLDNKIHLYRGQRTGKF-----VRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      +|+.|++|++||+.. +..     ..+..+.+|...|.+++|+        ++ +.+|++++.|++|+|||+.++...  
T Consensus        93 SgS~DgtIkIWdi~~-~~~~~~~~~~l~~L~gH~~~V~~l~f~--------P~~~~iLaSgs~DgtVrIWDl~tg~~~--  161 (493)
T PTZ00421         93 TASEDGTIMGWGIPE-EGLTQNISDPIVHLQGHTKKVGIVSFH--------PSAMNVLASAGADMVVNVWDVERGKAV--  161 (493)
T ss_pred             EEeCCCEEEEEecCC-CccccccCcceEEecCCCCcEEEEEeC--------cCCCCEEEEEeCCCEEEEEECCCCeEE--
Confidence            578999999999976 321     3466889999999999999        55 469999999999999999876432  


Q ss_pred             eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                                                       ..+.+|.+.|.+++|+      +++.+      |++++.|++|++||
T Consensus       162 ---------------------------------~~l~~h~~~V~sla~s------pdG~l------Latgs~Dg~IrIwD  196 (493)
T PTZ00421        162 ---------------------------------EVIKCHSDQITSLEWN------LDGSL------LCTTSKDKKLNIID  196 (493)
T ss_pred             ---------------------------------EEEcCCCCceEEEEEE------CCCCE------EEEecCCCEEEEEE
Confidence                                             2356799999999999      78889      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEe----eCCeEEEEEcccCcccCccccccccc-ccccEEEE
Q 048511          155 PEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHG----YGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDI  228 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v  228 (351)
                      +++  +..+..+.     .|... +..+.|.+++..+++++    .|+.|++||++...    .+...... +...+...
T Consensus       197 ~rs--g~~v~tl~-----~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----~p~~~~~~d~~~~~~~~  265 (493)
T PTZ00421        197 PRD--GTIVSSVE-----AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----SPYSTVDLDQSSALFIP  265 (493)
T ss_pred             CCC--CcEEEEEe-----cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC----CceeEeccCCCCceEEE
Confidence            998  66665554     45443 45678889888777665    47899999998753    23333332 23455667


Q ss_pred             EeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          229 SWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       229 ~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .|++++.+|++++ .|+.|++||+.++..          +... ..+..++..++|.|  .  +-+-...--..|+|.+.
T Consensus       266 ~~d~d~~~L~lggkgDg~Iriwdl~~~~~----------~~~~~~~s~~~~~g~~~~p--k--~~~dv~~~Ei~r~~~l~  331 (493)
T PTZ00421        266 FFDEDTNLLYIGSKGEGNIRCFELMNERL----------TFCSSYSSVEPHKGLCMMP--K--WSLDTRKCEIARFYALT  331 (493)
T ss_pred             EEcCCCCEEEEEEeCCCeEEEEEeeCCce----------EEEeeccCCCCCcceEecc--c--ccccccceeeeEEEEec
Confidence            7899999998887 499999999988762          2111 12344578888888  1  22222233345677765


Q ss_pred             chhhh
Q 048511          307 LSFLK  311 (351)
Q Consensus       307 ~~~~~  311 (351)
                      .+.+.
T Consensus       332 ~~~i~  336 (493)
T PTZ00421        332 YHSLY  336 (493)
T ss_pred             CCeEE
Confidence            44333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=193.24  Aligned_cols=252  Identities=17%  Similarity=0.181  Sum_probs=200.9

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccceeeeEeeecCCeEEecCC
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      ...+..|.+.|..+.|-        ++...|+||+.|..|++|+....+. ......+...++..+.|.++++.+++++.
T Consensus       168 ~~~ld~h~gev~~v~~l--------~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFL--------RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             hhhhhccccccceeEEc--------cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            34678899999999999        7788999999999999999987652 23334445667999999999999999998


Q ss_pred             ceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          101 SYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       101 ~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                      +...++|.        ++.||++.|+++.|.      .....      +++|+.|.+|++||+..  ..+.+++.+    
T Consensus       240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~------~~~~~------vVsgs~DRtiK~WDl~k--~~C~kt~l~----  301 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK------LSHSR------VVSGSADRTIKLWDLQK--AYCSKTVLP----  301 (459)
T ss_pred             CCceeeeeccchhhhhhhcccccceeeehhh------ccccc------eeeccccchhhhhhhhh--hheeccccc----
Confidence            88777665        588999999999999      55566      99999999999999998  777766542    


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                        ...+..|+.+  ...++++..|+.|++||.++.     .+......+. .|+++..++++..|.+++.|.++.+.|++
T Consensus       302 --~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~-----~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  302 --GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA-----DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             --cccccceEec--ceeeeecccccceEEEeccCC-----ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence              2234455554  567899999999999999987     4566666554 89999999999999999999999999999


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +....     .......+ -..+..+.+.|+|  ++.|+++||.||.|+||++. +++.+.++...
T Consensus       372 t~eI~-----~~~sA~g~-k~asDwtrvvfSp--d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~  429 (459)
T KOG0288|consen  372 TKEIR-----QTFSAEGF-KCASDWTRVVFSP--DGSYVAAGSADGSVYIWSVFTGKLEKVLSLST  429 (459)
T ss_pred             cccEE-----EEeecccc-ccccccceeEECC--CCceeeeccCCCcEEEEEccCceEEEEeccCC
Confidence            87621     11111111 1234489999999  99999999999999999987 77776666544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.4e-26  Score=179.03  Aligned_cols=265  Identities=18%  Similarity=0.226  Sum_probs=184.3

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeec-ccccceeeeEeeecCCeEEec
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQS-TYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +..|++|.+.|++|+|+        .+|++|||++.|++|++|+++......  .+.. ..-...+.+.|.||.+.+++.
T Consensus        79 ~~~LKgH~~~vt~~~Fs--------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS--------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hhhhhccCCceeeeEEc--------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence            45789999999999999        899999999999999999998653211  1111 112356788899988766654


Q ss_pred             CCce-eEEEEEe--------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           99 SSSY-QVSVESL--------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        99 ~~~~-~~~~~~~--------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      ...+ .+.+...                    -..|.-.+..+-..      ..+.+      |++++.|..|.+|+++ 
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA------~~~k~------imsas~dt~i~lw~lk-  217 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA------GNAKY------IMSASLDTKICLWDLK-  217 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec------CCceE------EEEecCCCcEEEEecC-
Confidence            3222 2221111                    12244455555555      56777      9999999999999998 


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc---cCcccCcccccccccccccEEEEEeecCC
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV---GVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                        |+.+..+.     .....-+..+.+|+|+++++++.--.|++|.+-   .+..+.-..+.++++|.+.|..++|+|+.
T Consensus       218 --Gq~L~~id-----tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S  290 (420)
T KOG2096|consen  218 --GQLLQSID-----TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS  290 (420)
T ss_pred             --Cceeeeec-----cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence              56666554     445556778999999999999999999999973   33333334567889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                      ..+++.+.||+++|||+.-.-........++.... +...+.....++.+|  +++.||.. ....+++|..+ ++...+
T Consensus       291 ~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~lA~s-~gs~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  291 TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDSLAVS-FGSDLKVFASEDGKDYPE  367 (420)
T ss_pred             ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcEEEee-cCCceEEEEcccCccchh
Confidence            99999999999999998644321111122222211 122233445899999  77776655 44467888865 666665


Q ss_pred             eeecc
Q 048511          313 LNHAT  317 (351)
Q Consensus       313 ~~~~~  317 (351)
                      ++...
T Consensus       368 ~e~~h  372 (420)
T KOG2096|consen  368 LEDIH  372 (420)
T ss_pred             HHHhh
Confidence            55433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-24  Score=163.99  Aligned_cols=256  Identities=16%  Similarity=0.157  Sum_probs=200.9

Q ss_pred             CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC------Ccc--------cceeecccccc
Q 048511           17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL------RGS--------SANTQSTYRKE   82 (351)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~------~~~--------~~~~~~~~~~~   82 (351)
                      ..+..+..+. .+..|.+++|+        |.|.+.+.|+..++++|-....      ...        +......+...
T Consensus        21 ~~f~~i~~l~-dsqairav~fh--------p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs   91 (350)
T KOG0641|consen   21 KHFEAINILE-DSQAIRAVAFH--------PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS   91 (350)
T ss_pred             cceEEEEEec-chhheeeEEec--------CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc
Confidence            4456666665 46789999999        8899999999999998864321      111        12223344778


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEE-------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCC
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVES-------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDK  148 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~  148 (351)
                      +.+.+|+|.|+++++|+.+..++...             .+.-|.+.|..++|.....  ..+.+      |++++ .|.
T Consensus        92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~--s~~~i------l~s~gagdc  163 (350)
T KOG0641|consen   92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE--SGGAI------LASAGAGDC  163 (350)
T ss_pred             EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC--cCceE------EEecCCCcc
Confidence            89999999999999999999887654             2455888999999985443  33444      66665 477


Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------c
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-------H  221 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~  221 (351)
                      .|++-|...  ++....+.     +|.+-|..+- +-++-.+++|+.|.+|++||++-.     .++.++..       .
T Consensus       164 ~iy~tdc~~--g~~~~a~s-----ghtghilaly-swn~~m~~sgsqdktirfwdlrv~-----~~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  164 KIYITDCGR--GQGFHALS-----GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-----SCVNTLDNDFHDGGLE  230 (350)
T ss_pred             eEEEeecCC--CCcceeec-----CCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-----ceeeeccCcccCCCcc
Confidence            788888887  66666655     8888887752 346788999999999999999876     34544432       2


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      .+.|.+++..|.|++|++|-.|....+||++.++          .+.++..|...|.|+.|+|  ...++++++.|..|+
T Consensus       231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r----------~iq~f~phsadir~vrfsp--~a~yllt~syd~~ik  298 (350)
T KOG0641|consen  231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR----------MIQRFHPHSADIRCVRFSP--GAHYLLTCSYDMKIK  298 (350)
T ss_pred             cceeEEEEECCCcceeeeccCCCceEEEEeeCCc----------eeeeeCCCccceeEEEeCC--CceEEEEecccceEE
Confidence            3579999999999999999999999999999987          7888889999999999999  889999999999999


Q ss_pred             EEecCchhhhcee
Q 048511          302 VFEAPLSFLKTLN  314 (351)
Q Consensus       302 vw~~~~~~~~~~~  314 (351)
                      +=|+.|.+...|.
T Consensus       299 ltdlqgdla~el~  311 (350)
T KOG0641|consen  299 LTDLQGDLAHELP  311 (350)
T ss_pred             EeecccchhhcCc
Confidence            9999987766554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.4e-26  Score=188.92  Aligned_cols=225  Identities=15%  Similarity=0.183  Sum_probs=175.8

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      --|.+.|+.+.+.    |   .+..++||.+..+.|.|||..+..........                         .+
T Consensus       121 i~h~gEVnRaRym----P---Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~-------------------------~~  168 (422)
T KOG0264|consen  121 INHDGEVNRARYM----P---QNPNIVATKTSSGDVYVFDYTKHPSKPKASGE-------------------------CR  168 (422)
T ss_pred             ccCCccchhhhhC----C---CCCcEEEecCCCCCEEEEEeccCCCccccccc-------------------------CC
Confidence            4589999999998    3   56678899999999999998765433221100                         01


Q ss_pred             EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ..-.+.+|.+.-++|.|++.     ..-.      |++++.|++|++||+...............+.+|...|..++|++
T Consensus       169 Pdl~L~gH~~eg~glsWn~~-----~~g~------Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~  237 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQ-----QEGT------LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP  237 (422)
T ss_pred             CceEEEeecccccccccccc-----ccee------EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc
Confidence            12346789888888999962     2334      999999999999999874321111111222458999999999999


Q ss_pred             C-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511          186 D-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       186 ~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  263 (351)
                      - ...+++++.|+.+.|||+++..   .++.....+|.+.|.+++|+| ++.+||||+.|++|++||+|+..        
T Consensus       238 ~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------  306 (422)
T KOG0264|consen  238 LHEDLFGSVGDDGKLMIWDTRSNT---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------  306 (422)
T ss_pred             cchhhheeecCCCeEEEEEcCCCC---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------
Confidence            5 4578899999999999999632   267888899999999999999 55678999999999999999887        


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       +++..+.+|...|.++.|+| .....||+++.|+++.|||+.
T Consensus       307 -~~lh~~e~H~dev~~V~WSP-h~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  307 -KPLHTFEGHEDEVFQVEWSP-HNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             -cCceeccCCCcceEEEEeCC-CCCceeEecccCCcEEEEecc
Confidence             36778889999999999999 457788999999999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.2e-25  Score=184.91  Aligned_cols=250  Identities=17%  Similarity=0.230  Sum_probs=197.9

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-ee---------------e-ccccccee
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NT---------------Q-STYRKEVI   84 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~---------------~-~~~~~~~~   84 (351)
                      ...+..|.-+|.+|+++        +++++.++++.|++|.-|++.++.... ..               . ..+...++
T Consensus       135 ~~~~~~H~~s~~~vals--------~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil  206 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALS--------PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL  206 (479)
T ss_pred             ceeeccccCcceEEEee--------ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE
Confidence            45667899999999999        889999999999999999998776331 00               0 13456788


Q ss_pred             eeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                      +++.+++|++|++|+.+..+.+|.        .+.+|.+.|.+++|-      .....      +.+++.|+.|++|++.
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr------~gt~~------lys~s~Drsvkvw~~~  274 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR------KGTSE------LYSASADRSVKVWSID  274 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee------cCccc------eeeeecCCceEEEehh
Confidence            999999999999999999887664        478999999999998      55556      9999999999999999


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      .  ...+.++.     +|...|..|.....++.+-+|+.|.++++|++...      ....+.++.+.+-+++|-.+. .
T Consensus       275 ~--~s~vetly-----GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee------sqlifrg~~~sidcv~~In~~-H  340 (479)
T KOG0299|consen  275 Q--LSYVETLY-----GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE------SQLIFRGGEGSIDCVAFINDE-H  340 (479)
T ss_pred             H--hHHHHHHh-----CCccceeeechhcccceEEeccccceeEEEecccc------ceeeeeCCCCCeeeEEEeccc-c
Confidence            8  55555554     89999999998888888888899999999999553      345667888899999998764 6


Q ss_pred             EEEEeCCCcEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          237 LLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |++|+.||.|.+|++...+........-....  ....+...|++++..|  ...++++|+.+|.||+|.+..
T Consensus       341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~--~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP--GSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc--cCceEEecCCCCceEEEEecC
Confidence            89999999999999987762110000000000  0011223799999999  899999999999999999873

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.3e-25  Score=173.95  Aligned_cols=222  Identities=19%  Similarity=0.222  Sum_probs=175.8

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .|.+||..++.+ +  +.++.+.||...|++|+.+        |-++.+++++.|++|++||++..++...+.       
T Consensus        78 ~d~tIryLsl~d-N--kylRYF~GH~~~V~sL~~s--------P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-------  139 (311)
T KOG1446|consen   78 EDDTIRYLSLHD-N--KYLRYFPGHKKRVNSLSVS--------PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-------  139 (311)
T ss_pred             CCCceEEEEeec-C--ceEEEcCCCCceEEEEEec--------CCCCeEEecccCCeEEeeEecCCCCceEEe-------
Confidence            378999999998 6  4678999999999999999        778999999999999999999765543222       


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                                    ...-..++|.      |.|-+      +|++...+.|++||++..+..+.
T Consensus       140 ------------------------------~~~~pi~AfD------p~GLi------fA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  140 ------------------------------LSGRPIAAFD------PEGLI------FALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             ------------------------------cCCCcceeEC------CCCcE------EEEecCCCeEEEEEecccCCCCc
Confidence                                          1223356888      67888      89988888999999998666666


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc---EEEEEeecCCCEEEEE
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA---VMDISWSRSSDYLLSV  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~s~  240 (351)
                      .++.+..  ........+.|+|+|++|+.+...+.+++.|.-.+.     .+.++..+...   -.+.+|+||++++++|
T Consensus       178 ~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  178 TTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-----VKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             eeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-----EeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            6666433  445678999999999999999999999999998873     45555554432   2567899999999999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +.||+|.+|+++++.          .+..+++ +..++.|+.|+|  .-.++++  .+..+.+|-..
T Consensus       251 s~dg~i~vw~~~tg~----------~v~~~~~~~~~~~~~~~fnP--~~~mf~s--a~s~l~fw~p~  303 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGK----------KVAVLRGPNGGPVSCVRFNP--RYAMFVS--ASSNLVFWLPD  303 (311)
T ss_pred             cCCCcEEEEEcCCCc----------EeeEecCCCCCCccccccCC--ceeeeee--cCceEEEEecc
Confidence            999999999998887          5656656 678899999998  4444444  46678888654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.5e-25  Score=181.04  Aligned_cols=276  Identities=15%  Similarity=0.167  Sum_probs=206.8

Q ss_pred             ceEEEEEccCCCceEEEEeeeec-CCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeecccccce
Q 048511            6 NKIHLYRGQRTGKFVRACELKGH-TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .++.+||+++ |  ....++++- ...-.++...         +..+++++.. -..|.+|.+....... .....++.+
T Consensus        18 ~~~~~~dl~T-G--t~~~~ykg~~~a~~~sl~~l---------~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v   84 (476)
T KOG0646|consen   18 INCIVWDLRT-G--TSLLQYKGSYLAQAASLTAL---------NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPV   84 (476)
T ss_pred             cceeEEecCC-C--ceeEEecCcccccchhhhhh---------chhheeeecccCccccccccCchhhhh-hhcccccce
Confidence            4599999999 7  445566653 2222222222         2456766643 3478999998765554 233345678


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      .+++.++.|.+++.|...+.+.+|..        +.+|-..|+|+.|+      .|+.+      |+||+.||.|.+|++
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs------~dgs~------iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS------DDGSH------IITGSKDGAVLVWLL  152 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe------CCCcE------EEecCCCccEEEEEE
Confidence            89999999999999999999988875        56799999999999      89999      999999999999997


Q ss_pred             cCCC--cceEEEEEeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511          156 EKTT--GIWMNVVTVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS  231 (351)
Q Consensus       156 ~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s  231 (351)
                      ...-  ..-.....+..+..|..+|+.+...+.  ..++++++.|.++++||+..+     .++.++. ....+.+++.+
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-----~LLlti~-fp~si~av~lD  226 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-----VLLLTIT-FPSSIKAVALD  226 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-----eeeEEEe-cCCcceeEEEc
Confidence            6410  000012223334589999999988765  458999999999999999987     3444443 56789999999


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCcccccc------CccceEEecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLM------GENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      |.++.++.|+.+|.|.+.++..-.....      .......+..+.+|..  .|+|++++.  |+.+|++|+.||.|.||
T Consensus       227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~--DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST--DGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec--CccEEEeeCCCCCEEEE
Confidence            9999999999999999998865442111      0112234556678877  899999999  99999999999999999


Q ss_pred             ecC-chhhhcee
Q 048511          304 EAP-LSFLKTLN  314 (351)
Q Consensus       304 ~~~-~~~~~~~~  314 (351)
                      |+. .++++++.
T Consensus       305 di~S~Q~iRtl~  316 (476)
T KOG0646|consen  305 DIYSKQCIRTLQ  316 (476)
T ss_pred             ecchHHHHHHHh
Confidence            986 78888877

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-25  Score=195.49  Aligned_cols=284  Identities=17%  Similarity=0.157  Sum_probs=217.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      .|..+|+|.|+|+.. +  +.+.+++.-.+.|++++|.        .||. .||+|+..|.+.+||++..+........+
T Consensus       219 iG~~~G~ViifNlK~-d--kil~sFk~d~g~VtslSFr--------tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah  287 (910)
T KOG1539|consen  219 IGLENGTVIIFNLKF-D--KILMSFKQDWGRVTSLSFR--------TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH  287 (910)
T ss_pred             EeccCceEEEEEccc-C--cEEEEEEccccceeEEEec--------cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc
Confidence            478899999999999 6  4567777445999999999        5664 67778888999999999888777777666


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+....|.+...++++++.+...+.            .+.-.||..+..|+.|.-     ..+.+      +.+++.|
T Consensus       288 ~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~-----~~g~~------ilsa~~D  356 (910)
T KOG1539|consen  288 YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG-----SQGHF------ILSAKQD  356 (910)
T ss_pred             cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeec-----cCcEE------EEecccC
Confidence            777888888888888888776655543            345578999999999985     56777      8888888


Q ss_pred             CeEEEEeccCCC-----cc---------------------eE--------------------------------------
Q 048511          148 KTMMIWQPEKTT-----GI---------------------WM--------------------------------------  163 (351)
Q Consensus       148 ~~i~iwd~~~~~-----~~---------------------~~--------------------------------------  163 (351)
                      ++.+.+++....     ++                     .+                                      
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence            888887764300     00                     00                                      


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc---ccccccEEEEEeecCCCEEEEE
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP---SGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ..+...........+++++.++.|++.+.|...|.|-+|++..+-     ....+   ..|.++|++++...-++.++++
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-----eecccccCccccCceeEEEecCCCceEEEc
Confidence            000000011123568899999999999999999999999999873     24444   5799999999999888999999


Q ss_pred             eCCCcEEEEcCCCcccccc-------------------------------CccceEEeccccccccceeEEEEeeeCCCc
Q 048511          241 SHDQTTRVFAPWKNVASLM-------------------------------GENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                      +.+|.+.+||.........                               ...+.+.+..+.+|+..|++++|+|  ||+
T Consensus       512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~--Dgr  589 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP--DGR  589 (910)
T ss_pred             cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC--CCc
Confidence            9999999999977652211                               1222234556778999999999999  999


Q ss_pred             EEEEecCCCeEEEEecC-chhhhce
Q 048511          290 RFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      +|++++.|++||+||++ +.++..+
T Consensus       590 WlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             EEEEeecCCcEEEEeccCcceeeeE
Confidence            99999999999999987 6665544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.8e-25  Score=190.54  Aligned_cols=235  Identities=19%  Similarity=0.293  Sum_probs=187.3

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc-cccceee-eEee-ecCCeE
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-YRKEVIS-LASY-IEGPVL   95 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~l   95 (351)
                      ++..+.+.+|...|..+++.         ++..++++|+||++++|+-...+.+...... +..-+.. +++. .++..+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~---------~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l   74 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVT---------DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRL   74 (745)
T ss_pred             ceeEEEeccCccchheeEec---------CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcce
Confidence            46677899999999999887         3558999999999999998776665432222 1112222 3444 455668


Q ss_pred             EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511           96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      +.|+.+..+-++.        .+.+|...|.|+...      .++.       +++||.|.++++|....    +...  
T Consensus        75 ~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~------~~~~-------~iSgSWD~TakvW~~~~----l~~~--  135 (745)
T KOG0301|consen   75 VVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG------EDGT-------LISGSWDSTAKVWRIGE----LVYS--  135 (745)
T ss_pred             EeecccceEEEEecCCCCchhhhhccccceeeeecC------CcCc-------eEecccccceEEecchh----hhcc--
Confidence            8888887775543        588999999999977      3433       89999999999998765    2223  


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                         ..+|+..|+.++.-|.+ .+++|+.|.+|++|.-.       ++++++.+|...|+.+++-+++. |++++.||.|+
T Consensus       136 ---l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-------~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir  203 (745)
T KOG0301|consen  136 ---LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-------TLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR  203 (745)
T ss_pred             ---cCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------chhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence               34999999999999987 89999999999999653       45899999999999999998864 78899999999


Q ss_pred             EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|++ ++.          .+.++.+|..-+++++..+  +++.++++++|++++||+..
T Consensus       204 ~w~~-~ge----------~l~~~~ghtn~vYsis~~~--~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  204 LWDL-DGE----------VLLEMHGHTNFVYSISMAL--SDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEec-cCc----------eeeeeeccceEEEEEEecC--CCCeEEEecCCceEEEeecC
Confidence            9999 444          5666778999999999777  78999999999999999965

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.1e-25  Score=187.32  Aligned_cols=255  Identities=15%  Similarity=0.225  Sum_probs=208.0

Q ss_pred             CCceEEEEEccCCCceEEEEeeee--cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-ccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKG--HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-TYR   80 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~   80 (351)
                      ..|.|+|||+...+...++..+..  ...-|.++...        ++|+.|++|+.-.++.|||+........... ...
T Consensus       438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--------pdgrtLivGGeastlsiWDLAapTprikaeltssa  509 (705)
T KOG0639|consen  438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA  509 (705)
T ss_pred             CCCeEEEeeccCCCCCCccccccccCcccceeeeEec--------CCCceEEeccccceeeeeeccCCCcchhhhcCCcc
Confidence            367899999987554455555543  35678999999        8999999999999999999987755332222 223


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ....+++.+||.++.+++..++.|.+|        +.++||++.+.||.++      +||..      |.+|+-|++||-
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis------~dGtk------lWTGGlDntvRc  577 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------KDGTK------LWTGGLDNTVRC  577 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec------CCCce------eecCCCccceee
Confidence            466788899999999999999888665        4589999999999999      89999      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||+++  +..+...      .....|.++-.+|++.++++|-.++.+.|......+      .+.+..|++.|.++.|.+
T Consensus       578 WDlre--grqlqqh------dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~  643 (705)
T KOG0639|consen  578 WDLRE--GRQLQQH------DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY  643 (705)
T ss_pred             hhhhh--hhhhhhh------hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence            99998  5433322      235679999999999999999999998887766643      667778999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      .|+++++.+.|..+..|....+.          .+... .....|.++.++.  |+++|++|+.|....||.+
T Consensus       644 cGkwfvStGkDnlLnawrtPyGa----------siFqs-kE~SsVlsCDIS~--ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGA----------SIFQS-KESSSVLSCDISF--DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCceeeecCchhhhhhccCcccc----------ceeec-cccCcceeeeecc--CceEEEecCCCcceEEEEE
Confidence            99999999999999999998776          23222 2345699999998  9999999999999988874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=183.14  Aligned_cols=233  Identities=17%  Similarity=0.256  Sum_probs=176.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEe------------------eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEE
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACE------------------LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIR   62 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~------------------~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~   62 (351)
                      .|+.|..|.|||++-.....+..+                  ..+|+++|.+|.|+    .   .....||+||.|.+|+
T Consensus       197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n----~---~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN----R---NFRNVLASGSADKTVK  269 (463)
T ss_pred             EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc----c---ccceeEEecCCCceEE
Confidence            377889999999874222222222                  23799999999998    2   3457899999999999


Q ss_pred             EEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           63 IWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      +||+.++++..                                   .+..|.+.|.+++|+|     ....+      |+
T Consensus       270 lWD~~~g~p~~-----------------------------------s~~~~~k~Vq~l~wh~-----~~p~~------LL  303 (463)
T KOG0270|consen  270 LWDVDTGKPKS-----------------------------------SITHHGKKVQTLEWHP-----YEPSV------LL  303 (463)
T ss_pred             EEEcCCCCcce-----------------------------------ehhhcCCceeEEEecC-----CCceE------EE
Confidence            99999987653                                   3456899999999997     55667      99


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      +|+.|++|.+.|+|.. ...-...+      ..+.|-.++|+|.. ..++++..||+|+-+|+|...    +++.++++|
T Consensus       304 sGs~D~~V~l~D~R~~-~~s~~~wk------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AH  372 (463)
T KOG0270|consen  304 SGSYDGTVALKDCRDP-SNSGKEWK------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAH  372 (463)
T ss_pred             eccccceEEeeeccCc-cccCceEE------eccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEec
Confidence            9999999999999952 11112222      34568899999965 467777889999999999875    789999999


Q ss_pred             cccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          222 FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       222 ~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      .+.|.++++++.- .+++|++.|+.|++|++......        .+......-+...|+++.| ....+++.|+..+.+
T Consensus       373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--------~v~~~~~~~~rl~c~~~~~-~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--------SVKEHSFKLGRLHCFALDP-DVAFTLAFGGEKAVL  443 (463)
T ss_pred             cCCcceEEecCCCCcceeeccccceEEEEeecCCCCc--------ccccccccccceeecccCC-CcceEEEecCccceE
Confidence            9999999999854 46889999999999999765421        1111001112267888888 346788999999999


Q ss_pred             EEEecC
Q 048511          301 RVFEAP  306 (351)
Q Consensus       301 ~vw~~~  306 (351)
                      +|||+.
T Consensus       444 ~vwd~~  449 (463)
T KOG0270|consen  444 RVWDIF  449 (463)
T ss_pred             EEeecc
Confidence            999965

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=3.2e-24  Score=184.88  Aligned_cols=275  Identities=23%  Similarity=0.326  Sum_probs=208.0

Q ss_pred             CCCCCceEEEEEccCCC------------------ceEEE----------EeeeecCCceeEEEeeCCcccCCCCCccEE
Q 048511            1 MGGLDNKIHLYRGQRTG------------------KFVRA----------CELKGHTDWIRSLDFSLPVCTSGEAISILL   52 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~------------------~~~~~----------~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l   52 (351)
                      ++|+|..||||.+...+                  .+...          ..+.||++.|.++.|+        |.+..|
T Consensus       211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~--------p~~~~L  282 (764)
T KOG1063|consen  211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH--------PEGLDL  282 (764)
T ss_pred             ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc--------cchhhh
Confidence            58999999999876411                  01111          1235999999999999        778899


Q ss_pred             EEeeCCCcEEEEecCCCccc--ceeec----ccccceeeeEeeecCCeEEecCCceeEEEEE-----------ecccccc
Q 048511           53 VSSSQDKVIRIWKLALRGSS--ANTQS----TYRKEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHED  115 (351)
Q Consensus        53 ~t~~~dg~i~iwd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~  115 (351)
                      ++++.|.++.+|...+..-+  .....    +.........|++++..+++.+..+...+|+           ...||.+
T Consensus       283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~  362 (764)
T KOG1063|consen  283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD  362 (764)
T ss_pred             eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence            99999999999998765322  12211    2233467888999999999988888887776           2568999


Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce---------------------------------
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW---------------------------------  162 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------------------  162 (351)
                      .|.+++|.      |.|.+      |++.+.|.+-|++-.-..+..+                                 
T Consensus       363 ~V~dv~W~------psGef------lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV  430 (764)
T KOG1063|consen  363 GVKDVDWD------PSGEF------LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV  430 (764)
T ss_pred             cceeeeec------CCCCE------EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence            99999999      67778      8888888777766443100000                                 


Q ss_pred             EEEEE---------------------------------------------------------------------------
Q 048511          163 MNVVT---------------------------------------------------------------------------  167 (351)
Q Consensus       163 ~~~~~---------------------------------------------------------------------------  167 (351)
                      ++.+.                                                                           
T Consensus       431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq  510 (764)
T KOG1063|consen  431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ  510 (764)
T ss_pred             eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence            00000                                                                           


Q ss_pred             -------eccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          168 -------VGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       168 -------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                             ...+-+|...|++++.+|+++++|+++..     ..|++|+..+     |..++.+.+|.-.|+.++||||++
T Consensus       511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-----W~~~~~L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-----WLQVQELEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----hhhhheecccceEEEEEEECCCCc
Confidence                   00034788889999999999999999865     3599998876     355778999999999999999999


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      +|++.+.|+++.+|.........      ......+.|..-|++++|+|  ++.+|+|+|.|..|+||..+..
T Consensus       586 ~LLsvsRDRt~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~p--de~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  586 YLLSVSRDRTVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSP--DEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEeecCceEEeeeeecccchh------hhhccccccceEEEEcccCc--ccceeEEecCCceEEEEeccCc
Confidence            99999999999999986554211      12444678999999999999  8999999999999999998733

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5e-26  Score=198.17  Aligned_cols=215  Identities=15%  Similarity=0.255  Sum_probs=168.2

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI  111 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (351)
                      +..|.|.    .   -..++|||++..|.|.+||+.......                                ....+.
T Consensus        90 ~~DVkW~----~---~~~NlIAT~s~nG~i~vWdlnk~~rnk--------------------------------~l~~f~  130 (839)
T KOG0269|consen   90 AADVKWG----Q---LYSNLIATCSTNGVISVWDLNKSIRNK--------------------------------LLTVFN  130 (839)
T ss_pred             hhhcccc----c---chhhhheeecCCCcEEEEecCccccch--------------------------------hhhHhh
Confidence            4556676    2   467899999999999999998732111                                112457


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEE
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSI  190 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l  190 (351)
                      .|+..++++.|++     ...++      |++||.||+|++||++.  .....++.     .....|+.+.|+| .+.++
T Consensus       131 EH~Rs~~~ldfh~-----tep~i------liSGSQDg~vK~~DlR~--~~S~~t~~-----~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  131 EHERSANKLDFHS-----TEPNI------LISGSQDGTVKCWDLRS--KKSKSTFR-----SNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             hhccceeeeeecc-----CCccE------EEecCCCceEEEEeeec--cccccccc-----ccchhhhceeeccCCCceE
Confidence            7999999999996     34455      99999999999999998  55555554     5677899999999 46788


Q ss_pred             EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                      +++...|.+.+||++...    ++..++.+|.++|.++.|+|++.+||||+.|+.|+|||+...+.     .....+.  
T Consensus       193 ~s~~dsG~lqlWDlRqp~----r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-----~~~~tIn--  261 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPD----RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-----KPKHTIN--  261 (839)
T ss_pred             EEecCCceEEEeeccCch----hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-----cceeEEe--
Confidence            888899999999999875    67889999999999999999999999999999999999986652     1222222  


Q ss_pred             cccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecCchhh--hceeecc
Q 048511          271 QVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAPLSFL--KTLNHAT  317 (351)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~~~~~--~~~~~~~  317 (351)
                        ...+|.++.|-| .....|++++  .|-.|+|||+...++  .++..|.
T Consensus       262 --Tiapv~rVkWRP-~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~  309 (839)
T KOG0269|consen  262 --TIAPVGRVKWRP-ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT  309 (839)
T ss_pred             --ecceeeeeeecc-CccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence              346799999999 3356777776  788999999875443  4555554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-24  Score=178.82  Aligned_cols=270  Identities=10%  Similarity=0.137  Sum_probs=207.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccce--eec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSAN--TQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~--~~~   77 (351)
                      +|+.||+++||.++. ..-..+..+.--.-+|.+..|.        ++|. .+++++.-..+..||+.+.+....  ...
T Consensus       230 vaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~--------p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g  300 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFA--------PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG  300 (514)
T ss_pred             EecCCCcEEEEEecC-ccChhheeeeeccCccceeeec--------CCCceEEEecccceEEEEeeccccccccccCCCC
Confidence            588999999999987 3334555665557799999999        7787 999999999999999987764322  222


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      .....+..+..++++++++..+..+.|.+.....+       -.+.|..+.|+      .+++.      |++++.+|.|
T Consensus       301 ~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fs------Sdsk~------l~~~~~~GeV  368 (514)
T KOG2055|consen  301 VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFS------SDSKE------LLASGGTGEV  368 (514)
T ss_pred             cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEe------cCCcE------EEEEcCCceE
Confidence            22345667888999999999999999987654322       35678999999      78888      9999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc-ccCcccccccccccccEEEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD-IDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      .+||++.  ..++..+..    .....-++++.++++.+||+|+..|.|.|||.++.. ....+++..+..-...|+++.
T Consensus       369 ~v~nl~~--~~~~~rf~D----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  369 YVWNLRQ--NSCLHRFVD----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             EEEecCC--cceEEEEee----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence            9999999  677777652    112234678888999999999999999999975321 112367778777788999999


Q ss_pred             eecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+|+.++||.+|.  +..+++-.+.+...    ...|-..   ...-+.++|++|+|  .+.++|.|.++|.|.+|.+.
T Consensus       443 Fn~d~qiLAiaS~~~knalrLVHvPS~TV----FsNfP~~---n~~vg~vtc~aFSP--~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  443 FNHDAQILAIASRVKKNALRLVHVPSCTV----FSNFPTS---NTKVGHVTCMAFSP--NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eCcchhhhhhhhhccccceEEEeccceee----eccCCCC---CCcccceEEEEecC--CCceEEeecCCCceeeEeec
Confidence            9999999887764  67889888766541    1122222   22223499999999  89999999999999999863

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.1e-25  Score=173.06  Aligned_cols=226  Identities=18%  Similarity=0.181  Sum_probs=172.1

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce--eecccccceeeeEeeecCCeEEecCCcee
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN--TQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      .-|.+.|+++...    +   ..|+++++|+.||.|.+||++.......  ....+    .                  .
T Consensus        40 r~HgGsvNsL~id----~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----~------------------c   90 (397)
T KOG4283|consen   40 RPHGGSVNSLQID----L---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----K------------------C   90 (397)
T ss_pred             ccCCCccceeeec----c---ccceEEeecCCCccEEEEEeccccchhhccceehe----e------------------e
Confidence            4688999999998    3   5789999999999999999986542110  00000    0                  0


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                      +.-...-.+|.-.|.++.|.|     .|.-+      |.+++.|.++++||..+  .+....+.      .+..|++-++
T Consensus        91 ~v~~~h~~~Hky~iss~~WyP-----~DtGm------FtssSFDhtlKVWDtnT--lQ~a~~F~------me~~VYsham  151 (397)
T KOG4283|consen   91 IVAKQHENGHKYAISSAIWYP-----IDTGM------FTSSSFDHTLKVWDTNT--LQEAVDFK------MEGKVYSHAM  151 (397)
T ss_pred             eccccCCccceeeeeeeEEee-----ecCce------eecccccceEEEeeccc--ceeeEEee------cCceeehhhc
Confidence            000112356888999999998     67777      99999999999999998  55555554      3456888899


Q ss_pred             cCC---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE-EEEEeCCCcEEEEcCCCcccccc
Q 048511          184 SPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       184 ~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      +|-   ..++|+|..+-.|++.|+..+     ..-.++.+|...|.+|.|+|...+ |++|+.||.|++||++.......
T Consensus       152 Sp~a~sHcLiA~gtr~~~VrLCDi~SG-----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~  226 (397)
T KOG4283|consen  152 SPMAMSHCLIAAGTRDVQVRLCDIASG-----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR  226 (397)
T ss_pred             ChhhhcceEEEEecCCCcEEEEeccCC-----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeE
Confidence            884   347788888899999999998     668899999999999999998777 68999999999999987632111


Q ss_pred             ---Cc--cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          260 ---GE--NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       260 ---~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                         ..  +....+..-..|.+.+..++|..  ++.++++.+.|..+++|+..
T Consensus       227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tS--d~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTS--DARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             EeecccCccCccccccccccceeeeeeecc--cchhhhhccCccceEEeecc
Confidence               00  00011122346788899999999  99999999999999999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=6.9e-24  Score=166.46  Aligned_cols=250  Identities=15%  Similarity=0.143  Sum_probs=183.8

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+.|..|.|+        +.+..|+.+++||++++||+..........  +..+++.++|.+ ...+++|+.++.++...
T Consensus        13 ~d~IS~v~f~--------~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   13 EDGISSVKFS--------PSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYD   81 (323)
T ss_pred             hhceeeEEEc--------CcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEE
Confidence            5689999999        677788888899999999998875544443  345788888877 55677788888887665


Q ss_pred             e-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          109 L-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       109 ~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                      .       +..|..+|.|+.++      +....      +++|++|++|++||.+.  ......+.      ....|+++
T Consensus        82 ln~~~~~~igth~~~i~ci~~~------~~~~~------vIsgsWD~~ik~wD~R~--~~~~~~~d------~~kkVy~~  141 (323)
T KOG1036|consen   82 LNTGNEDQIGTHDEGIRCIEYS------YEVGC------VISGSWDKTIKFWDPRN--KVVVGTFD------QGKKVYCM  141 (323)
T ss_pred             ecCCcceeeccCCCceEEEEee------ccCCe------EEEcccCccEEEEeccc--cccccccc------cCceEEEE
Confidence            3       56699999999999      44455      99999999999999996  33222222      23367777


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE  261 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  261 (351)
                      ..  .++.|++|+.+..+.+||+++.....   ...-..-...+++|++-|++.-+++++-||.|.+=.+..........
T Consensus       142 ~v--~g~~LvVg~~~r~v~iyDLRn~~~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  142 DV--SGNRLVVGTSDRKVLIYDLRNLDEPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             ec--cCCEEEEeecCceEEEEEcccccchh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence            76  57789999999999999999875311   11112234578999999988888999999999987766553222111


Q ss_pred             cceEEecccc---ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          262 NSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       262 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      -.+++.....   ....+|++++|+|  -.+.||||+.||.|.+||+. .+.+..|..+
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp--~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHP--IHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEecc--ccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            2233322221   1235699999999  68899999999999999976 6667777666

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=3.9e-24  Score=174.98  Aligned_cols=236  Identities=18%  Similarity=0.202  Sum_probs=197.3

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      ..|+++...        +....++||+.|..+.++|...++.+. ...++...+..+.++++...++.+..+..+++|..
T Consensus       220 pgi~ald~~--------~s~~~ilTGG~d~~av~~d~~s~q~l~-~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~  290 (506)
T KOG0289|consen  220 PGITALDII--------PSSSKILTGGEDKTAVLFDKPSNQILA-TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV  290 (506)
T ss_pred             CCeeEEeec--------CCCCcceecCCCCceEEEecchhhhhh-hccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence            367888887        556799999999999999998766554 44556778899999999999999999998887754


Q ss_pred             --------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          110 --------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       110 --------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                              ...|..+|+.+..+      +.|.+      |++++.|++..+.|+++  +..+.....   ......++++
T Consensus       291 ~~~s~~~~~~~h~~~V~~ls~h------~tgeY------llsAs~d~~w~Fsd~~~--g~~lt~vs~---~~s~v~~ts~  353 (506)
T KOG0289|consen  291 PLSSEPTSSRPHEEPVTGLSLH------PTGEY------LLSASNDGTWAFSDISS--GSQLTVVSD---ETSDVEYTSA  353 (506)
T ss_pred             ccccCccccccccccceeeeec------cCCcE------EEEecCCceEEEEEccC--CcEEEEEee---ccccceeEEe
Confidence                    56799999999999      78899      99999999999999999  666655441   1234568999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE  261 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  261 (351)
                      +|+|||..+.+|..|+.|++||+...     ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+      
T Consensus       354 ~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------  422 (506)
T KOG0289|consen  354 AFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------  422 (506)
T ss_pred             eEcCCceEEeccCCCceEEEEEcCCc-----cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------
Confidence            99999999999999999999999887     4588999999999999999999999999999999999998876      


Q ss_pred             cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                       .++.+...  ....+.++.|.+  .|.+|+.++.|=.|++++-..
T Consensus       423 -n~kt~~l~--~~~~v~s~~fD~--SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  423 -NFKTIQLD--EKKEVNSLSFDQ--SGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             -ccceeecc--ccccceeEEEcC--CCCeEEeecceeEEEEEeccc
Confidence             22233221  223689999998  899999999998888888543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.6e-26  Score=199.81  Aligned_cols=217  Identities=22%  Similarity=0.256  Sum_probs=187.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|-.+-+|....   +..+..|.+|..+|-+|.|+        ....+|++|+.+|+|++||++....+        
T Consensus        45 ~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~--------~~E~LlaagsasgtiK~wDleeAk~v--------  105 (825)
T KOG0267|consen   45 TGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFD--------TSERLLAAGSASGTIKVWDLEEAKIV--------  105 (825)
T ss_pred             cCCCceeeccccccC---CchhheeeccCCcceeeecC--------cchhhhcccccCCceeeeehhhhhhh--------
Confidence            477788888888765   34556799999999999999        88999999999999999999866433        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 +++.+|...+.++.|+      |-+.+      +++|+.|+.+++||.+.  .
T Consensus       106 ---------------------------rtLtgh~~~~~sv~f~------P~~~~------~a~gStdtd~~iwD~Rk--~  144 (825)
T KOG0267|consen  106 ---------------------------RTLTGHLLNITSVDFH------PYGEF------FASGSTDTDLKIWDIRK--K  144 (825)
T ss_pred             ---------------------------hhhhccccCcceeeec------cceEE------eccccccccceehhhhc--c
Confidence                                       4678999999999999      78888      99999999999999997  5


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      .+...+.     +|...+..+.|+|+|++++.++.|..++|||+..+     +....|..|++.+..+.|+|..-++++|
T Consensus       145 Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-----k~~~ef~~~e~~v~sle~hp~e~Lla~G  214 (825)
T KOG0267|consen  145 GCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-----KLSKEFKSHEGKVQSLEFHPLEVLLAPG  214 (825)
T ss_pred             Cceeeec-----CCcceeEEEeecCCCceeeccCCcceeeeeccccc-----ccccccccccccccccccCchhhhhccC
Confidence            6666665     68888999999999999999999999999999887     5688999999999999999998899999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      +.|+++++||+++..          .+.........|.+.+|++  ++..+++|..+..
T Consensus       215 s~d~tv~f~dletfe----------~I~s~~~~~~~v~~~~fn~--~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  215 SSDRTVRFWDLETFE----------VISSGKPETDGVRSLAFNP--DGKIVLSGEQISL  261 (825)
T ss_pred             CCCceeeeeccceeE----------EeeccCCccCCceeeeecC--CceeeecCchhhh
Confidence            999999999997654          5665555567799999999  8988888876644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=8.2e-25  Score=175.94  Aligned_cols=239  Identities=16%  Similarity=0.222  Sum_probs=179.0

Q ss_pred             CCCceEEEEEccC-------------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511            3 GLDNKIHLYRGQR-------------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus         3 ~~dg~i~vw~~~~-------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   69 (351)
                      +..|.|+||++..             ..+..++.++.+|.+.=++|+|+    |   .....|+||..-+.|++|...++
T Consensus       172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS----p---~~~g~LlsGDc~~~I~lw~~~~g  244 (440)
T KOG0302|consen  172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS----P---IKTGRLLSGDCVKGIHLWEPSTG  244 (440)
T ss_pred             cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc----c---ccccccccCccccceEeeeeccC
Confidence            5679999999763             13456788999999999999999    3   22346888888889999999886


Q ss_pred             cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      ......                                ..+.+|+..|..|+|+|     ....+      |++||.||+
T Consensus       245 ~W~vd~--------------------------------~Pf~gH~~SVEDLqWSp-----tE~~v------faScS~Dgs  281 (440)
T KOG0302|consen  245 SWKVDQ--------------------------------RPFTGHTKSVEDLQWSP-----TEDGV------FASCSCDGS  281 (440)
T ss_pred             ceeecC--------------------------------ccccccccchhhhccCC-----ccCce------EEeeecCce
Confidence            543222                                23567999999999998     45566      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |+|||+|..........     ..|...|.-|.|+....+|++|+.||+++|||++.-+..  +++..++.|..+|++|.
T Consensus       282 IrIWDiRs~~~~~~~~~-----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~fk~Hk~pItsie  354 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVST-----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATFKYHKAPITSIE  354 (440)
T ss_pred             EEEEEecCCCccceeEe-----eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeEEeccCCeeEEE
Confidence            99999998422222222     378889999999999889999999999999999875543  78899999999999999


Q ss_pred             eecCC-CEEEEEeCCCcEEEEcCCCcccccc----CccceEEe--cccccc--ccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          230 WSRSS-DYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEV--ARPQVH--GHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       230 ~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      |+|.. ..|++++.|.+|.|||+........    ....+..+  ..+..|  ...+..+.|++ .-..+|++.+-||.
T Consensus       355 W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~-QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  355 WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHR-QIPGLLVSTAIDGF  432 (440)
T ss_pred             eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheecc-CCCCeEEEecccce
Confidence            99954 5678888999999999865442110    00010000  011234  23488899998 44678888888886

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.3e-24  Score=189.25  Aligned_cols=208  Identities=17%  Similarity=0.225  Sum_probs=153.0

Q ss_pred             CCCCCceEEEEEccCCCce-----EEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccce
Q 048511            1 MGGLDNKIHLYRGQRTGKF-----VRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      +|+.||+|+|||+...+..     .++..+.+|...|.+++|+        |++. +|++++.|++|++||+.+++....
T Consensus        92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~--------P~g~~iLaSgS~DgtIrIWDl~tg~~~~~  163 (568)
T PTZ00420         92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN--------PMNYYIMCSSGFDSFVNIWDIENEKRAFQ  163 (568)
T ss_pred             EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC--------CCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            5789999999999762211     2345788999999999999        6665 467999999999999987653311


Q ss_pred             eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                                                         +. |...|.+++|+      ++|.+      |++++.|+.|+|||
T Consensus       164 -----------------------------------i~-~~~~V~Slsws------pdG~l------Lat~s~D~~IrIwD  195 (568)
T PTZ00420        164 -----------------------------------IN-MPKKLSSLKWN------IKGNL------LSGTCVGKHMHIID  195 (568)
T ss_pred             -----------------------------------Ee-cCCcEEEEEEC------CCCCE------EEEEecCCEEEEEE
Confidence                                               12 45679999999      78999      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccce-----EEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCccccccc--ccccc
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGF-----YGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVP--SGHFA  223 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i-----~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~--~~~~~  223 (351)
                      +++  +..+..+.     .|...+     ....|++++.+|++++.|+    .|+|||++...    .++..+  ..+.+
T Consensus       196 ~Rs--g~~i~tl~-----gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~~~~ld~~~~  264 (568)
T PTZ00420        196 PRK--QEIASSFH-----IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----SALVTMSIDNASA  264 (568)
T ss_pred             CCC--CcEEEEEe-----cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----CceEEEEecCCcc
Confidence            998  76666655     555443     2334568999999988774    79999998642    334433  23334


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      .+......+++.++++|+.|+.|++|++..+.        ...+..+. +..+..+++|.|
T Consensus       265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~--------~~~l~~~~-s~~p~~g~~f~P  316 (568)
T PTZ00420        265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS--------IRKVNEYK-SCSPFRSFGFLP  316 (568)
T ss_pred             ceEEeeeCCCCCEEEEEECCCeEEEEEccCCc--------EEeecccc-cCCCccceEEcc
Confidence            44444445568889999999999999997654        22343332 556788899998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.3e-25  Score=180.39  Aligned_cols=218  Identities=18%  Similarity=0.217  Sum_probs=173.8

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+..|.|++|.+.+ |  ..+..+.+|...|+|+.|+        .|+.+|+|||.||.|.+|.+..-            
T Consensus        99 g~i~g~lYlWelss-G--~LL~v~~aHYQ~ITcL~fs--------~dgs~iiTgskDg~V~vW~l~~l------------  155 (476)
T KOG0646|consen   99 GTISGNLYLWELSS-G--ILLNVLSAHYQSITCLKFS--------DDGSHIITGSKDGAVLVWLLTDL------------  155 (476)
T ss_pred             ecccCcEEEEEecc-c--cHHHHHHhhccceeEEEEe--------CCCcEEEecCCCccEEEEEEEee------------
Confidence            34788999999999 8  4567789999999999999        89999999999999999998532            


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                    +.+..+........+..|+-+|+++...+-.    ....      |+|+|.|.++++||+..  +.
T Consensus       156 --------------v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg----~~~r------l~TaS~D~t~k~wdlS~--g~  209 (476)
T KOG0646|consen  156 --------------VSADNDHSVKPLHIFSDHTLSITDLQIGSGG----TNAR------LYTASEDRTIKLWDLSL--GV  209 (476)
T ss_pred             --------------cccccCCCccceeeeccCcceeEEEEecCCC----ccce------EEEecCCceEEEEEecc--ce
Confidence                          1122233345567788999999999988422    1223      99999999999999999  77


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-----------cCcccccccccccc--cEEEE
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-----------DNWQPQKVPSGHFA--AVMDI  228 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----------~~~~~~~~~~~~~~--~v~~v  228 (351)
                      .+.++.      ....+.+++.+|.++.+++|+.+|.|.+.++.....           .....+..+.+|.+  .|+++
T Consensus       210 LLlti~------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL  283 (476)
T KOG0646|consen  210 LLLTIT------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL  283 (476)
T ss_pred             eeEEEe------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence            776664      456799999999999999999999999998854321           01123445678887  99999


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +.+-||..|++|+.||.|+|||+.+.+          .+.++....++|+.+.+.|
T Consensus       284 ais~DgtlLlSGd~dg~VcvWdi~S~Q----------~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  284 AISTDGTLLLSGDEDGKVCVWDIYSKQ----------CIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEecCccEEEeeCCCCCEEEEecchHH----------HHHHHhhhccccceeEeec
Confidence            999999999999999999999998877          4555444556788888865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=8e-24  Score=174.34  Aligned_cols=259  Identities=18%  Similarity=0.143  Sum_probs=200.4

Q ss_pred             CCCCCceEEEEEccCCCceE---------------EEEee-eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE
Q 048511            1 MGGLDNKIHLYRGQRTGKFV---------------RACEL-KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW   64 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~---------------~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw   64 (351)
                      +++.||+|.-|++.+ ++-.               +...- ++|...|.+++.+        +++++||||+.|..|.||
T Consensus       159 sask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS--------~Dgkylatgg~d~~v~Iw  229 (479)
T KOG0299|consen  159 SASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS--------SDGKYLATGGRDRHVQIW  229 (479)
T ss_pred             ecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEc--------CCCcEEEecCCCceEEEe
Confidence            468899999999887 4311               00011 3789999999999        899999999999999999


Q ss_pred             ecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccC
Q 048511           65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus        65 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~  136 (351)
                      +..+.+.+.. ...+...+.+++|......+++++.+..+++|.        ++.+|.+.|..|...      ...+.  
T Consensus       230 ~~~t~ehv~~-~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL------~reR~--  300 (479)
T KOG0299|consen  230 DCDTLEHVKV-FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL------SRERC--  300 (479)
T ss_pred             cCcccchhhc-ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh------cccce--
Confidence            9999877665 455678899999999999999999999998876        478999999999988      55665  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  216 (351)
                          +-+|+.|+++++|++..  .. ...+.     ++...+-|++|-. ..++++|+.+|.|.+|++...+     ++.
T Consensus       301 ----vtVGgrDrT~rlwKi~e--es-qlifr-----g~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk-----plf  362 (479)
T KOG0299|consen  301 ----VTVGGRDRTVRLWKIPE--ES-QLIFR-----GGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK-----PLF  362 (479)
T ss_pred             ----EEeccccceeEEEeccc--cc-eeeee-----CCCCCeeeEEEec-ccceeeccCCceEEEeeecccC-----cee
Confidence                66667999999999965  22 22233     6777899999864 4679999999999999997763     232


Q ss_pred             ccc------------cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          217 VPS------------GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       217 ~~~------------~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +..            .+..+|++++..|...++++|+.+|.|++|-+..+-      +.+..+..+. -.+-|+.++|++
T Consensus       363 ~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~------r~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  363 TSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL------RAINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             EeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc------cccceeeecc-cccEEEEEEEcc
Confidence            211            123489999999999999999999999999998874      2344555554 345699999998


Q ss_pred             eCCCcE-EEEecCCCeEEEEe
Q 048511          285 GKGNHR-FVSGADEKVARVFE  304 (351)
Q Consensus       285 ~~~~~~-l~s~~~dg~v~vw~  304 (351)
                        ++.+ ++..+..-.+--|-
T Consensus       436 --sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  436 --SGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             --CCCEEEEecccccccceee
Confidence              7774 45555555555554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=6.9e-25  Score=176.37  Aligned_cols=232  Identities=18%  Similarity=0.300  Sum_probs=177.5

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      ....|.+.|+.+.-.    +-  .+..+.++=+..|.|.||++...-.......      ...             .+..
T Consensus       146 ~~i~h~g~~NRvr~~----~~--~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------~~~-------------~~s~  200 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVS----RL--GNEVLCASWSENGRVQVWDLAPHLNALSEPG------LEV-------------KDSE  200 (440)
T ss_pred             cccccccccceeeec----cc--CCcceeeeecccCcEEEEEchhhhhhhcCcc------ccc-------------cccc
Confidence            445788888888877    22  3456777778999999999864322110000      000             0012


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                      .+.+.++.+|...=+.|+|+|.    ..| .      |++|.--+.|++|...+  +.+.....  .+.+|+..|-.++|
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~----~~g-~------LlsGDc~~~I~lw~~~~--g~W~vd~~--Pf~gH~~SVEDLqW  265 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPI----KTG-R------LLSGDCVKGIHLWEPST--GSWKVDQR--PFTGHTKSVEDLQW  265 (440)
T ss_pred             cCceEEecccCccceeeecccc----ccc-c------cccCccccceEeeeecc--CceeecCc--cccccccchhhhcc
Confidence            2344567889999999999973    233 3      88888889999999998  76654322  23469999999999


Q ss_pred             cCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511          184 SPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       184 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  262 (351)
                      +|.. ..|++|+.||+|+|||++.+..   +.....++|.+.|+-|.|+....+||+|+.||+++|||++.-+..     
T Consensus       266 SptE~~vfaScS~DgsIrIWDiRs~~~---~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----  337 (440)
T KOG0302|consen  266 SPTEDGVFASCSCDGSIRIWDIRSGPK---KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----  337 (440)
T ss_pred             CCccCceEEeeecCceEEEEEecCCCc---cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----
Confidence            9965 5889999999999999998743   233344889999999999998889999999999999999987632     


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        +++..+..|..+|+++.|+| .+...|+++|.|..|.+||+.
T Consensus       338 --~pVA~fk~Hk~pItsieW~p-~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  338 --QPVATFKYHKAPITSIEWHP-HEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             --CcceeEEeccCCeeEEEecc-ccCceEEeccCCCcEEEEEee
Confidence              47888999999999999999 457788999999999999976

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.5e-24  Score=186.04  Aligned_cols=217  Identities=19%  Similarity=0.317  Sum_probs=187.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeee-cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +|..+|.|.|||... .  ..+..+.+ |...|-+++|.          +..+.+|+.|+.|..+|++..+........+
T Consensus       234 vG~~~g~v~iwD~~~-~--k~~~~~~~~h~~rvg~laW~----------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H  300 (484)
T KOG0305|consen  234 VGTSDGTVQIWDVKE-Q--KKTRTLRGSHASRVGSLAWN----------SSVLSSGSRDGKILNHDVRISQHVVSTLQGH  300 (484)
T ss_pred             EeecCCeEEEEehhh-c--cccccccCCcCceeEEEecc----------CceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence            477899999999987 4  45667777 99999999998          6689999999999999999888776656667


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee--cCCe
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKT  149 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~  149 (351)
                      ...+..+.|++++..+++|+.+..+.++..        +..|...|..++|+|     ....+      ||+|+  .|+.
T Consensus       301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP-----~q~~l------LAsGGGs~D~~  369 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP-----WQSGL------LATGGGSADRC  369 (484)
T ss_pred             cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC-----CccCc------eEEcCCCcccE
Confidence            889999999999999999999988877653        678999999999998     55667      99875  5999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      |++||..+  +..+..+.      ....|.++.|++..+.|+++.  .++.|.||+..+.     +.+..+.+|...|..
T Consensus       370 i~fwn~~~--g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-----~~~~~l~gH~~RVl~  436 (484)
T KOG0305|consen  370 IKFWNTNT--GARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-----KLVAELLGHTSRVLY  436 (484)
T ss_pred             EEEEEcCC--CcEecccc------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-----ceeeeecCCcceeEE
Confidence            99999998  77766653      456899999999988776644  5678999999884     678899999999999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ++++|||..+++|+.|.++++|++-..
T Consensus       437 la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  437 LALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEECCCCCEEEEecccCcEEeccccCC
Confidence            999999999999999999999998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=2.9e-23  Score=172.98  Aligned_cols=252  Identities=14%  Similarity=0.222  Sum_probs=186.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||..+|.|.||+... .+  ...+..+|.+.|.++...        .+|. |+||+.|+.|..|| ..-+..+..+.+..
T Consensus       262 TgDS~G~i~Iw~~~~-~~--~~k~~~aH~ggv~~L~~l--------r~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~  328 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGT-NR--ISKQVHAHDGGVFSLCML--------RDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQ  328 (626)
T ss_pred             eecCCceEEEEeCCC-ce--EEeEeeecCCceEEEEEe--------cCcc-EeecCccceEEecc-ccccccccccCchh
Confidence            688999999999977 53  333444999999999998        6675 55599999999999 33344444443332


Q ss_pred             -cceeeeEeeecCCeEEecCCceeE-------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 -KEVISLASYIEGPVLVAGSSSYQV-------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 -~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                       ..++.++-...+  +.+|.....+       .......+|.+..+.++.+      ++.++      +++++.|+.+++
T Consensus       329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h------ps~~q------~~T~gqdk~v~l  394 (626)
T KOG2106|consen  329 FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH------PSKNQ------LLTCGQDKHVRL  394 (626)
T ss_pred             cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcC------CChhh------eeeccCcceEEE
Confidence             233333333222  4444433322       1223467899999999999      66777      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      |+-..  ..+.+.        ...+..|+.|+|.| .++.|...|...+.|.++.     ..+..-. ...+++.+.|+|
T Consensus       395 W~~~k--~~wt~~--------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-----~lv~~~~-d~~~ls~v~ysp  457 (626)
T KOG2106|consen  395 WNDHK--LEWTKI--------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-----DLVTIHT-DNEQLSVVRYSP  457 (626)
T ss_pred             ccCCc--eeEEEE--------ecCceeEeeccCcc-eEEEeeccceEEEEecccc-----eeEEEEe-cCCceEEEEEcC
Confidence            99222  333322        23568899999999 9999999999999999885     2333333 378999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|.+||.|+.|+.|+||.+.....      .+..+..  .++.+|+.+.|++  |+++|.+-+.|-.|..|...
T Consensus       458 ~G~~lAvgs~d~~iyiy~Vs~~g~------~y~r~~k--~~gs~ithLDwS~--Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  458 DGAFLAVGSHDNHIYIYRVSANGR------KYSRVGK--CSGSPITHLDWSS--DSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             CCCEEEEecCCCeEEEEEECCCCc------EEEEeee--ecCceeEEeeecC--CCceEEeccCceEEEEEccc
Confidence            999999999999999999876652      3334443  3448899999999  99999999999999999543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.8e-24  Score=182.83  Aligned_cols=269  Identities=17%  Similarity=0.182  Sum_probs=199.0

Q ss_pred             CCCCceEEEEEccCCCceE----EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce-ee
Q 048511            2 GGLDNKIHLYRGQRTGKFV----RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN-TQ   76 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~   76 (351)
                      +..||.|.++|... ..+.    .+....+|..+|..+.|.        +....|++++.|.++++||+........ ..
T Consensus        70 adE~G~i~l~dt~~-~~fr~ee~~lk~~~aH~nAifDl~wa--------pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~  140 (720)
T KOG0321|consen   70 ADEDGGIILFDTKS-IVFRLEERQLKKPLAHKNAIFDLKWA--------PGESLLVSASGDSTIRPWDVKTSRLVGGRLN  140 (720)
T ss_pred             ecCCCceeeecchh-hhcchhhhhhcccccccceeEeeccC--------CCceeEEEccCCceeeeeeeccceeecceee
Confidence            56899999999886 4333    234567899999999999        7678999999999999999998776543 45


Q ss_pred             cccccceeeeEeeecCC-eEEecCCceeEEEEEe-----------------------------------ccccccceEE-
Q 048511           77 STYRKEVISLASYIEGP-VLVAGSSSYQVSVESL-----------------------------------LIGHEDWVYS-  119 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~-----------------------------------~~~h~~~v~~-  119 (351)
                      .++...+.+++|.+.+. ++++|++++.+.+|..                                   -..+...|.+ 
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            56677888999999665 7778999999877753                                   1112222333 


Q ss_pred             --EEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEE---ecccccc---ccceEEEEEcCCCCEE
Q 048511          120 --VQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVT---VGELSHS---ALGFYGGHWSPDGRSI  190 (351)
Q Consensus       120 --l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~---~~~~~~~---~~~i~~i~~~~~~~~l  190 (351)
                        +.+.      .|...      ||+++. |+.|+|||++..  .......   ......+   ...+.++..+..|.+|
T Consensus       221 vTvv~f------kDe~t------laSaga~D~~iKVWDLRk~--~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  221 VTVVLF------KDEST------LASAGAADSTIKVWDLRKN--YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             eEEEEE------eccce------eeeccCCCcceEEEeeccc--ccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence              3333      46667      999888 999999999972  2211111   1111122   3467888888889999


Q ss_pred             EEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                      ++.+.|+.|++|++.+-..   .++..+.++...  -..-..+|++.++++|+.|...++|.+.+..         ....
T Consensus       287 ~AsCtD~sIy~ynm~s~s~---sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---------~~~~  354 (720)
T KOG0321|consen  287 FASCTDNSIYFYNMRSLSI---SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---------APPA  354 (720)
T ss_pred             EEEecCCcEEEEeccccCc---CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---------CChh
Confidence            9999999999999987653   455555554321  1223568999999999999999999997765         3556


Q ss_pred             cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .+.+|...|++++|.|+... -++++++|..++||++.
T Consensus       355 ~l~Ght~eVt~V~w~pS~~t-~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  355 LLLGHTREVTTVRWLPSATT-PVATCSDDFRVKIWRLS  391 (720)
T ss_pred             hhhCcceEEEEEeeccccCC-CceeeccCcceEEEecc
Confidence            66789999999999995544 56677999999999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=4.1e-25  Score=168.53  Aligned_cols=217  Identities=16%  Similarity=0.187  Sum_probs=180.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +++.|=+-+|||.-+ |  ..++.|+ |..-|.+++|+        .+.++|+||+.+..+||+|++..+........+.
T Consensus        76 saaadftakvw~a~t-g--delhsf~-hkhivk~~af~--------~ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   76 SAAADFTAKVWDAVT-G--DELHSFE-HKHIVKAVAFS--------QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             hhcccchhhhhhhhh-h--hhhhhhh-hhheeeeEEec--------ccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            356777889999888 6  4556665 88899999999        8899999999999999999998877666667778


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+..+.|....+.+++...++.+++|....+       -..+|+++.++      ++|++       ++-...+.|++|
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs------~dG~i-------lTia~gssV~Fw  210 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS------QDGRI-------LTIAYGSSVKFW  210 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec------cCCCE-------EEEecCceeEEe
Confidence            88999999999999998899999999876443       24568888888      78875       555567789999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccEEEEEeec
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSR  232 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp  232 (351)
                      |..+  -..++.+.      ....|.+..++|+...+++|+.|..++.||..+++.     +-. .++|.++|.+|.|+|
T Consensus       211 daks--f~~lKs~k------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE-----i~~~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  211 DAKS--FGLLKSYK------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE-----IGSYNKGHFGPVHCVRFSP  277 (334)
T ss_pred             cccc--ccceeecc------CccccccccccCCCceEEecCcceEEEEEeccCCce-----eeecccCCCCceEEEEECC
Confidence            9998  55555543      344688999999999999999999999999999853     333 488999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +|...++|++||+|+||.+..++
T Consensus       278 dGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  278 DGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceeeccCCCceEEEEEecCCC
Confidence            99999999999999999986655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.9e-25  Score=176.37  Aligned_cols=236  Identities=14%  Similarity=0.147  Sum_probs=179.0

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      +..|.||.+.|.|++=+        |.. ..++||+.||.|+|||+....+...+. .+.+.+..+.+..  ..+++.+.
T Consensus        59 v~~L~gHrdGV~~lakh--------p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgd  127 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKH--------PNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGD  127 (433)
T ss_pred             hhhccccccccchhhcC--------cchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecC
Confidence            56789999999999998        444 789999999999999999876665444 3344566666655  55555566


Q ss_pred             ceeEEEEEecc------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511          101 SYQVSVESLLI------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       101 ~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                      +..++.|..-.      .....+..+.-+      ...+.      ++|++.+  |.|||.+.  ..++..+.     -.
T Consensus       128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~------~~~~~------FaTcGe~--i~IWD~~R--~~Pv~sms-----wG  186 (433)
T KOG0268|consen  128 DKTVKQWKIDGPPLHTILGKSVYLGIDHH------RKNSV------FATCGEQ--IDIWDEQR--DNPVSSMS-----WG  186 (433)
T ss_pred             CcceeeeeccCCcceeeeccccccccccc------ccccc------ccccCce--eeeccccc--CCccceee-----cC
Confidence            66666554211      012334455544      44555      8888765  88999987  55555555     34


Q ss_pred             ccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          175 ALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       175 ~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      ...|.++.|+|... .|++++.|+.|.|||++..     .+++.+.. .-.-+.|+|+|.+--|+++++|..++.||++.
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-----~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQA-----SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccC-----Cccceeee-eccccceecCccccceeeccccccceehhhhh
Confidence            55789999999765 6777779999999999997     44554432 23457799999777788999999999999988


Q ss_pred             ccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          254 NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..         .++...++|.+.|.+++|+|  .|+-|++||.|.+||||...
T Consensus       261 l~---------~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  261 LS---------RPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             hc---------ccchhhcccceeEEEeccCC--CcchhccccccceEEEeecC
Confidence            77         37777889999999999999  89999999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.6e-23  Score=163.23  Aligned_cols=248  Identities=11%  Similarity=0.070  Sum_probs=190.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.||++++|++.. ..   +...-.|..++.+++|.         +...+++|+.||.|+.+|++++....  ...+..
T Consensus        31 ssWDgslrlYdv~~-~~---l~~~~~~~~plL~c~F~---------d~~~~~~G~~dg~vr~~Dln~~~~~~--igth~~   95 (323)
T KOG1036|consen   31 SSWDGSLRLYDVPA-NS---LKLKFKHGAPLLDCAFA---------DESTIVTGGLDGQVRRYDLNTGNEDQ--IGTHDE   95 (323)
T ss_pred             EeccCcEEEEeccc-hh---hhhheecCCceeeeecc---------CCceEEEeccCceEEEEEecCCccee--eccCCC
Confidence            67899999999988 42   22233489999999998         36689999999999999999876543  333466


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      .+.++.+.+....+++|+.+..+++|..-.       ...+.|.++...        ++.      |+.|..|..|.+||
T Consensus        96 ~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--------g~~------LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   96 GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--------GNR------LVVGTSDRKVLIYD  161 (323)
T ss_pred             ceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--------CCE------EEEeecCceEEEEE
Confidence            889999999999999999999999987641       133478888866        455      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc---------ccE
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF---------AAV  225 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---------~~v  225 (351)
                      ++...  ......   ...-...+.|+++-|++.-+++++.||+|.+=.++..+.. ......++.|.         .+|
T Consensus       162 LRn~~--~~~q~r---eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~-~skkyaFkCHr~~~~~~~~~yPV  235 (323)
T KOG1036|consen  162 LRNLD--EPFQRR---ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA-QSKKYAFKCHRLSEKDTEIIYPV  235 (323)
T ss_pred             ccccc--chhhhc---cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH-hhhceeEEeeecccCCceEEEEe
Confidence            99832  221111   1234557899999999888999999999998777654110 11233444443         379


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      ++|+|+|-...|+||+.||.|.+||+.+.+          .+..+......|..++|+.  +|..||.++.
T Consensus       236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK----------rl~q~~~~~~SI~slsfs~--dG~~LAia~s  294 (323)
T KOG1036|consen  236 NAIAFHPIHGTFATGGSDGIVNIWDLFNRK----------RLKQLAKYETSISSLSFSM--DGSLLAIASS  294 (323)
T ss_pred             ceeEeccccceEEecCCCceEEEccCcchh----------hhhhccCCCCceEEEEecc--CCCeEEEEec
Confidence            999999998999999999999999999887          4444433445699999998  9999998863

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-22  Score=175.18  Aligned_cols=265  Identities=19%  Similarity=0.295  Sum_probs=212.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +-.||.|.||++.. + +.+...+.++. ..|-+++|+        + +..|++.+.+|.|.-||+.+.+....+.. ..
T Consensus        43 sRt~g~IEiwN~~~-~-w~~~~vi~g~~drsIE~L~W~--------e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~g  110 (691)
T KOG2048|consen   43 SRTDGNIEIWNLSN-N-WFLEPVIHGPEDRSIESLAWA--------E-GGRLFSSGLSGSITEWDLHTLKQKYNIDS-NG  110 (691)
T ss_pred             eccCCcEEEEccCC-C-ceeeEEEecCCCCceeeEEEc--------c-CCeEEeecCCceEEEEecccCceeEEecC-CC
Confidence            44689999999998 4 45566777665 489999998        3 55888999999999999999877655543 35


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEE----------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSV----------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      ..+.+++.+|.+..+++|..++.+..          ...+...++.|.+++|+      +++..      +++|+.||.|
T Consensus       111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~------~~~~~------i~~Gs~Dg~I  178 (691)
T KOG2048|consen  111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN------PTGTK------IAGGSIDGVI  178 (691)
T ss_pred             cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec------CCccE------EEecccCceE
Confidence            67889999999999999987775432          33455667899999999      78888      9999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      ++||........+.+.++..... ...-|+++.|-.+ ..|++|...|+|.+||...+     .+++.+..|.+.|.+++
T Consensus       179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-----TLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-----TLIQSHSCHDADVLALA  252 (691)
T ss_pred             EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-----chhhhhhhhhcceeEEE
Confidence            99999983322323333333333 3445788887754 46899999999999999987     67888999999999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..+++.++++++.|+.|..|......      ..|........|.+.+.+++..+  +  .+++|+.|..+.+-...
T Consensus       253 v~~~~d~vfsaGvd~~ii~~~~~~~~------~~wv~~~~r~~h~hdvrs~av~~--~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  253 VADNEDRVFSAGVDPKIIQYSLTTNK------SEWVINSRRDLHAHDVRSMAVIE--N--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             EcCCCCeEEEccCCCceEEEEecCCc------cceeeeccccCCcccceeeeeec--c--eEEecceeeEEEEcccc
Confidence            99999999999999999999887765      35878888889999999999987  3  89999999998886644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.2e-26  Score=195.83  Aligned_cols=203  Identities=15%  Similarity=0.242  Sum_probs=181.0

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV  104 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  104 (351)
                      +-+|...|.++..-        ..++.+++|+.|..+-+|.+.......                               
T Consensus        24 ~~~hsaav~~lk~~--------~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------------------------------   64 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIR--------KSSRSLVTGGEDEKVNLWAIGKPNAIT-------------------------------   64 (825)
T ss_pred             hhhhhhhhceeeee--------ccceeeccCCCceeeccccccCCchhh-------------------------------
Confidence            34688889998887        778999999999999999987654332                               


Q ss_pred             EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511          105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS  184 (351)
Q Consensus       105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (351)
                          .+.+|..+|.++.|+      .+..+      |++|+.+|+|++||++.  ...++++.     +|...+.++.|+
T Consensus        65 ----S~~~hespIeSl~f~------~~E~L------laagsasgtiK~wDlee--Ak~vrtLt-----gh~~~~~sv~f~  121 (825)
T KOG0267|consen   65 ----SLTGHESPIESLTFD------TSERL------LAAGSASGTIKVWDLEE--AKIVRTLT-----GHLLNITSVDFH  121 (825)
T ss_pred             ----eeeccCCcceeeecC------cchhh------hcccccCCceeeeehhh--hhhhhhhh-----ccccCcceeeec
Confidence                257899999999999      67778      99999999999999998  66666655     899999999999


Q ss_pred             CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511          185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      |-+.+.+.++.|..+.+||.+..     .|.+.+.+|...|..+.|+|+|++++++++|..++|||...++         
T Consensus       122 P~~~~~a~gStdtd~~iwD~Rk~-----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------  187 (825)
T KOG0267|consen  122 PYGEFFASGSTDTDLKIWDIRKK-----GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------  187 (825)
T ss_pred             cceEEeccccccccceehhhhcc-----CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---------
Confidence            99999999999999999999865     5788999999999999999999999999999999999998887         


Q ss_pred             EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          265 HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       ....+..|...+..+.|+|  ...++++||.|++|++||++
T Consensus       188 -~~~ef~~~e~~v~sle~hp--~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  188 -LSKEFKSHEGKVQSLEFHP--LEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             -cccccccccccccccccCc--hhhhhccCCCCceeeeeccc
Confidence             6777888999999999999  78889999999999999987

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.4e-23  Score=161.42  Aligned_cols=223  Identities=20%  Similarity=0.394  Sum_probs=173.1

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      .+|.+-|.++.|.        ..|+++|||+.|++|+|||........                               .
T Consensus        10 s~h~DlihdVs~D--------~~GRRmAtCSsDq~vkI~d~~~~s~~W-------------------------------~   50 (361)
T KOG2445|consen   10 SGHKDLIHDVSFD--------FYGRRMATCSSDQTVKIWDSTSDSGTW-------------------------------S   50 (361)
T ss_pred             cCCcceeeeeeec--------ccCceeeeccCCCcEEEEeccCCCCce-------------------------------E
Confidence            4789999999999        889999999999999999986554332                               2


Q ss_pred             EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEE
Q 048511          106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~  180 (351)
                      +-...+.|.+.|..+.|.+.    .-|+.      +|+++.|+++.||.-...     ..+++..-.   +......|+.
T Consensus        51 ~Ts~Wrah~~Si~rV~WAhP----EfGqv------vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt---l~DsrssV~D  117 (361)
T KOG2445|consen   51 CTSSWRAHDGSIWRVVWAHP----EFGQV------VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT---LVDSRSSVTD  117 (361)
T ss_pred             EeeeEEecCCcEEEEEecCc----cccce------EEEEecCCceeeeeecccccccccceeEEEEE---eecCCcceeE
Confidence            33456789999999999863    35778      999999999999986321     123333332   3356778999


Q ss_pred             EEEcCC--CCEEEEEeeCCeEEEEEccc-CcccCcccccccc-------cccccEEEEEeecC---CCEEEEEeCC----
Q 048511          181 GHWSPD--GRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPS-------GHFAAVMDISWSRS---SDYLLSVSHD----  243 (351)
Q Consensus       181 i~~~~~--~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~-------~~~~~v~~v~~sp~---~~~l~s~~~d----  243 (351)
                      +.|.|.  |-.|++++.||.+|||+.-. .....|++...++       .+.....++.|+|.   ..+||.|+.+    
T Consensus       118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~  197 (361)
T KOG2445|consen  118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPH  197 (361)
T ss_pred             EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcc
Confidence            999995  56899999999999999743 3344455555555       45667889999984   4678888765    


Q ss_pred             -CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC--CCcEEEEecCCCeEEEEecCc
Q 048511          244 -QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK--GNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       244 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~v~vw~~~~  307 (351)
                       +.+.||......      +.|..+..+..|..+|+.++|.|..  .-.+||+++.|| |+||.+..
T Consensus       198 ~~~~~Iye~~e~~------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  198 LNKVKIYEYNENG------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             ccceEEEEecCCc------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence             488999886664      4788899999999999999999932  246899999999 99999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=3.1e-23  Score=161.96  Aligned_cols=269  Identities=21%  Similarity=0.290  Sum_probs=191.6

Q ss_pred             CCCCCceEEEEEccCCCc---------eEEE---EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511            1 MGGLDNKIHLYRGQRTGK---------FVRA---CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL   68 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~---------~~~~---~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~   68 (351)
                      +|+.||.|.|||++....         ..++   ..-.+|.-.|..+.|-    |   -+...+.+++-|.++++||.++
T Consensus        61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy----P---~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY----P---IDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe----e---ecCceeecccccceEEEeeccc
Confidence            589999999999986211         1111   1124677799999999    4   4666889999999999999998


Q ss_pred             CcccceeecccccceeeeEeeec---CCeEEecCCceeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCC
Q 048511           69 RGSSANTQSTYRKEVISLASYIE---GPVLVAGSSSYQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQ  137 (351)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~  137 (351)
                      .+....+..  +..+.+-+++|-   -.++++|.++-.+++        -..+.||.+.|.++.|+|     ...-.   
T Consensus       134 lQ~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp-----~~e~v---  203 (397)
T KOG4283|consen  134 LQEAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP-----SSEWV---  203 (397)
T ss_pred             ceeeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc-----CceeE---
Confidence            766544432  335556666663   346667777777654        356899999999999997     44456   


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEec---------cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVG---------ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD  208 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~  208 (351)
                         |++|+.||.|++||++...+ +...+...         ....|.+.+..++|..++.++++++.|..+++|+...++
T Consensus       204 ---LatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  204 ---LATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ---EEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence               99999999999999997422 22222211         134677889999999999999999999999999998775


Q ss_pred             ccC--cccccc-cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          209 IDN--WQPQKV-PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       209 ~~~--~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ...  +-++.. -..|. .+. +. +-+...++---.++.+.++.+-.++          .+..+..|...|.|.++-| 
T Consensus       280 ntl~~~g~~~~n~~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs----------~ir~l~~h~k~i~c~~~~~-  345 (397)
T KOG4283|consen  280 NTLREFGPIIHNQTTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGS----------FVRRLSTHLKRINCAAYRP-  345 (397)
T ss_pred             ccccccccccccccccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCce----------EEEeeecccceeeEEeecC-
Confidence            311  111100 00011 111 22 2233344444456889999887776          7777788888899999999 


Q ss_pred             CCCcEEEEecCCCeEEEEec
Q 048511          286 KGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~  305 (351)
                       +-+...+|..|+.|..|-.
T Consensus       346 -~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  346 -DFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             -chhhhhccccCCccccccc
Confidence             8899999999999999986

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.2e-23  Score=190.08  Aligned_cols=240  Identities=18%  Similarity=0.256  Sum_probs=179.4

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEee--CCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSS--QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      +...|.+++.+        |++..++||+  .|+.++||+...-.........   .                    .-+
T Consensus        12 ~~~~IfSIdv~--------pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---~--------------------l~k   60 (942)
T KOG0973|consen   12 NEKSIFSIDVH--------PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---N--------------------LPK   60 (942)
T ss_pred             CCeeEEEEEec--------CCceeEecCCccccccceeeccccccchhhhhhc---c--------------------cch
Confidence            34579999999        8999999999  9999999997632211000000   0                    002


Q ss_pred             EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce----------EEE-EEecccccc
Q 048511          106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW----------MNV-VTVGELSHS  174 (351)
Q Consensus       106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------~~~-~~~~~~~~~  174 (351)
                      .......|.+.|+|+.|+      +||++      ||+|+.|+.|.||+........          +.. -....+.+|
T Consensus        61 ~l~~m~~h~~sv~CVR~S------~dG~~------lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H  128 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFS------PDGSY------LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH  128 (942)
T ss_pred             hheeeccccCceeEEEEC------CCCCe------EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC
Confidence            234456799999999999      89999      9999999999999988300000          000 011123489


Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ...|..++|+|++.++++++.|++|.+|+..+-     ..+..+.+|.+.|-.+.|.|-|+|||+-+.|++|+||++.+-
T Consensus       129 ~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw  203 (942)
T KOG0973|consen  129 DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW  203 (942)
T ss_pred             CCccceeccCCCccEEEEecccceEEEEccccc-----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence            999999999999999999999999999999885     678999999999999999999999999999999999996542


Q ss_pred             ccccc------------------------------------------CccceEEeccccccccceeEEEEeee---CC--
Q 048511          255 VASLM------------------------------------------GENSWHEVARPQVHGHDINCVTIIQG---KG--  287 (351)
Q Consensus       255 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~---~~--  287 (351)
                      .....                                          ....|+.-..+.+|..++.++.|+|.   ..  
T Consensus       204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence            11110                                          23456666677799999999999981   01  


Q ss_pred             ------C----cEEEEecCCCeEEEEecC-chhhhceee
Q 048511          288 ------N----HRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       288 ------~----~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                            .    ..+|+||.|++|.||... .+.+.....
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~  322 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN  322 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh
Confidence                  1    278899999999999964 444443333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=8.7e-22  Score=167.49  Aligned_cols=262  Identities=13%  Similarity=0.080  Sum_probs=180.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +++.|+.|++||..+ ++  .+..+..|. .+.+++|+        ++++.+ ++++.++.|++||..+++.......  
T Consensus         6 s~~~d~~v~~~d~~t-~~--~~~~~~~~~-~~~~l~~~--------~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--   71 (300)
T TIGR03866         6 SNEKDNTISVIDTAT-LE--VTRTFPVGQ-RPRGITLS--------KDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--   71 (300)
T ss_pred             EecCCCEEEEEECCC-Cc--eEEEEECCC-CCCceEEC--------CCCCEEEEEECCCCeEEEEECCCCcEEEeccC--
Confidence            467899999999988 64  455666554 46789999        778766 5677899999999988765543332  


Q ss_pred             ccceeeeEeeecCCeEEec-CCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-eE
Q 048511           80 RKEVISLASYIEGPVLVAG-SSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-TM  150 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-~i  150 (351)
                      ......+.++++++.++++ ..++.+.++..-.       .+...+.+++|+      +++.+      +++++.++ .+
T Consensus        72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~dg~~------l~~~~~~~~~~  139 (300)
T TIGR03866        72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVS------PDGKI------VVNTSETTNMA  139 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEEC------CCCCE------EEEEecCCCeE
Confidence            2235677899999877654 4456666554311       112346788999      78888      88887765 56


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccc-------c
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGH-------F  222 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~-------~  222 (351)
                      .+||.++  +.......      ....+.+++|+|+++++++++ .++.|++||+++.+     .+..+..+       .
T Consensus       140 ~~~d~~~--~~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       140 HFIDTKT--YEIVDNVL------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEA  206 (300)
T ss_pred             EEEeCCC--CeEEEEEE------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-----eeeeeeeccccccccc
Confidence            7789877  55444332      122356789999999886554 68999999998763     22222211       1


Q ss_pred             ccEEEEEeecCCCEEEE-EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe-cCCCeE
Q 048511          223 AAVMDISWSRSSDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG-ADEKVA  300 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~v  300 (351)
                      .....++|+|++++++. .+.++.+.+||+++.+          ..... .+...+.+++|+|  ++.+|+++ +.++.|
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~--~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----------VLDYL-LVGQRVWQLAFTP--DEKYLLTTNGVSNDV  273 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEEE-EeCCCcceEEECC--CCCEEEEEcCCCCeE
Confidence            12356889999998554 4556789999997765          22211 2345689999999  88888876 579999


Q ss_pred             EEEecC-chhhhcee
Q 048511          301 RVFEAP-LSFLKTLN  314 (351)
Q Consensus       301 ~vw~~~-~~~~~~~~  314 (351)
                      ++||+. ++.+.+++
T Consensus       274 ~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       274 SVIDVAALKVIKSIK  288 (300)
T ss_pred             EEEECCCCcEEEEEE
Confidence            999987 66666665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.2e-22  Score=159.13  Aligned_cols=217  Identities=17%  Similarity=0.208  Sum_probs=158.8

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      -.+.|.+|+|+    |   ....+++.+|.|++||+|+++.......                                 
T Consensus        26 P~DsIS~l~FS----P---~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------   65 (347)
T KOG0647|consen   26 PEDSISALAFS----P---QADNLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------   65 (347)
T ss_pred             cccchheeEec----c---ccCceEEecccCCceEEEEEecCCcccc---------------------------------
Confidence            46789999999    2   2566777999999999999987422211                                 


Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      +....|.++|.+++|+      .||..      +++|+.|+.+++||+.+  ++.. .+.     .|..+|.++.|-+..
T Consensus        66 ka~~~~~~PvL~v~Ws------ddgsk------Vf~g~~Dk~~k~wDL~S--~Q~~-~v~-----~Hd~pvkt~~wv~~~  125 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWS------DDGSK------VFSGGCDKQAKLWDLAS--GQVS-QVA-----AHDAPVKTCHWVPGM  125 (347)
T ss_pred             hhhhccCCCeEEEEEc------cCCce------EEeeccCCceEEEEccC--CCee-eee-----ecccceeEEEEecCC
Confidence            1235689999999999      89999      99999999999999998  5433 333     789999999998766


Q ss_pred             C--EEEEEeeCCeEEEEEcccCcccCcccccccc-------------------------------------cc----ccc
Q 048511          188 R--SILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------------------------------------GH----FAA  224 (351)
Q Consensus       188 ~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------------------------------~~----~~~  224 (351)
                      .  .|++|+.|++|++||.+....     +.++.                                     .+    .-.
T Consensus       126 ~~~cl~TGSWDKTlKfWD~R~~~p-----v~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q  200 (347)
T KOG0647|consen  126 NYQCLVTGSWDKTLKFWDTRSSNP-----VATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ  200 (347)
T ss_pred             CcceeEecccccceeecccCCCCe-----eeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce
Confidence            5  899999999999999987532     11111                                     11    224


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc---ccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      +++|+..++....+.|+-+|.+.|..+..+....  ...+++.+.-.   ..-+.|++++|+|  ....|+++|.||++.
T Consensus       201 ~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~--nFtFkCHR~~~~~~~~VYaVNsi~FhP--~hgtlvTaGsDGtf~  276 (347)
T KOG0647|consen  201 TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD--NFTFKCHRSTNSVNDDVYAVNSIAFHP--VHGTLVTAGSDGTFS  276 (347)
T ss_pred             eeEEEEEecCCceEeeeecceEEEEecCCCCccC--ceeEEEeccCCCCCCceEEecceEeec--ccceEEEecCCceEE
Confidence            6778777777777888888888888877652110  12333333211   1124589999999  788999999999999


Q ss_pred             EEecC-chhhhce
Q 048511          302 VFEAP-LSFLKTL  313 (351)
Q Consensus       302 vw~~~-~~~~~~~  313 (351)
                      +||-. ...+++.
T Consensus       277 FWDkdar~kLk~s  289 (347)
T KOG0647|consen  277 FWDKDARTKLKTS  289 (347)
T ss_pred             Eecchhhhhhhcc
Confidence            99976 3344443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3.6e-23  Score=175.75  Aligned_cols=256  Identities=20%  Similarity=0.219  Sum_probs=188.8

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCC--eEEe
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGP--VLVA   97 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~   97 (351)
                      .+...+.||++.|.+|...        +.|.+|++|+.||+|+||.+.++.++......  ..+.+++|+|.+.  +|++
T Consensus       391 ~~~lvyrGHtg~Vr~iSvd--------p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVD--------PSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             eeeeeEeccCCeEEEEEec--------CCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEE
Confidence            3455788999999999999        88999999999999999999999998766543  4788999988665  3443


Q ss_pred             cCCceeE--------------------------------EEE------------EeccccccceEEEEecCCCCCCCCCc
Q 048511           98 GSSSYQV--------------------------------SVE------------SLLIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        98 ~~~~~~~--------------------------------~~~------------~~~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                      +.....+                                ..|            .....|...|..+.|+      ..|.
T Consensus       461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH------rkGD  534 (733)
T KOG0650|consen  461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH------RKGD  534 (733)
T ss_pred             EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee------cCCc
Confidence            2211100                                011            1223467778888888      7888


Q ss_pred             ccCCCceeEEeecC---CeEEEEeccCCCcce--------EEEEEec--------------------------ccccccc
Q 048511          134 SCQQPSSILSASMD---KTMMIWQPEKTTGIW--------MNVVTVG--------------------------ELSHSAL  176 (351)
Q Consensus       134 ~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~--------~~~~~~~--------------------------~~~~~~~  176 (351)
                      +      |++...+   ..|.|+++.....+.        +....+.                          .+.....
T Consensus       535 Y------latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k  608 (733)
T KOG0650|consen  535 Y------LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK  608 (733)
T ss_pred             e------EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe
Confidence            8      8777553   457788776511110        0000000                          0113345


Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                      .|.+++.+|.|..|+.++.|+.+..||+.-+.    ++.+++..|...+++|+|++.-.+|++|+.||++.||--.-...
T Consensus       609 wiS~msihp~GDnli~gs~d~k~~WfDldlss----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSS----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             eeeeeeecCCCCeEEEecCCCeeEEEEcccCc----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence            67889999999999999999999999997764    67889999999999999999999999999999999985322110


Q ss_pred             cccCccceEEeccccccccc----eeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          257 SLMGENSWHEVARPQVHGHD----INCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                       ..+...+.++..+.+|...    |..+.|+|  ..-+|.+++.||+|++|.
T Consensus       685 -l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP--~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  685 -LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP--RQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             -hhcCCceEeeeeccCceeecccceEeecccC--CCceEEecCCCceEEeeC
Confidence             0012345678888888766    88889999  889999999999999993

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.7e-24  Score=195.18  Aligned_cols=236  Identities=18%  Similarity=0.218  Sum_probs=186.5

Q ss_pred             CCCCCceEEEEEccC---CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511            1 MGGLDNKIHLYRGQR---TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      .|..||.|.+||...   +++...+.++..|.+.|..+.|+    +   ..+++||+|+.||.|.|||+++.+...... 
T Consensus        85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN----~---~q~nlLASGa~~geI~iWDlnn~~tP~~~~-  156 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFN----P---FQGNLLASGADDGEILIWDLNKPETPFTPG-  156 (1049)
T ss_pred             ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecc----c---cCCceeeccCCCCcEEEeccCCcCCCCCCC-
Confidence            378899999999765   35556678889999999999999    3   345699999999999999998754432221 


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                                      -..-.+.|.+++|+-     ....+      |++++.+|++.|||++.
T Consensus       157 --------------------------------~~~~~~eI~~lsWNr-----kvqhI------LAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  157 --------------------------------SQAPPSEIKCLSWNR-----KVSHI------LASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             --------------------------------CCCCcccceEeccch-----hhhHH------hhccCCCCCceeccccC
Confidence                                            012356799999994     44556      99999999999999998


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                        .+.+..+..  . .....+..++|+|+.. .+++++.|   -.|.+||+|...    .+++.+.+|...|.++.|++.
T Consensus       194 --~~pii~ls~--~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP~k~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  194 --KKPIIKLSD--T-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SPLKILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             --CCccccccc--C-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----CchhhhcccccceeeeccCCC
Confidence              443333331  1 2224577899999864 56666655   469999998775    788999999999999999996


Q ss_pred             C-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          234 S-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       234 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      . ++|++++.|+.|.+|+.++++          .+..+...+..+..+.|+| .+...|++++-||.|-|+.+.+
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgE----------vl~~~p~~~nW~fdv~w~p-r~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGE----------VLGELPAQGNWCFDVQWCP-RNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCce----------EeeecCCCCcceeeeeecC-CCcchhhhheeccceeeeeeec
Confidence            6 889999999999999999987          6666666777899999999 4567999999999999999764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=1.8e-22  Score=177.60  Aligned_cols=267  Identities=11%  Similarity=0.137  Sum_probs=201.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~   77 (351)
                      +|+..|.+.+||++. .++ ......+|.+.|....|.        +....++|++.|..+++|=.+++.-   ......
T Consensus       262 s~~~~G~m~~wDLe~-kkl-~~v~~nah~~sv~~~~fl--------~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~  331 (910)
T KOG1539|consen  262 SGRSNGDMAFWDLEK-KKL-INVTRNAHYGSVTGATFL--------PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG  331 (910)
T ss_pred             eccCCceEEEEEcCC-Cee-eeeeeccccCCcccceec--------CCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence            467789999999998 533 233445899999999999        7888999999999999997764432   233344


Q ss_pred             ccccceeeeEee-ecCCeEEecCCceeE----------------------------------------------------
Q 048511           78 TYRKEVISLASY-IEGPVLVAGSSSYQV----------------------------------------------------  104 (351)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~----------------------------------------------------  104 (351)
                      ++..+..++.|. .+|..+..+..+...                                                    
T Consensus       332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W  411 (910)
T KOG1539|consen  332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW  411 (910)
T ss_pred             CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence            555666666665 455655554433321                                                    


Q ss_pred             -------------EEEEe--------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511          105 -------------SVESL--------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       105 -------------~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                   ..|..              ++.....+++++.+      +.|++      .+.|+..|.|-+|++++
T Consensus       412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs------~CGNF------~~IG~S~G~Id~fNmQS  479 (910)
T KOG1539|consen  412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS------FCGNF------VFIGYSKGTIDRFNMQS  479 (910)
T ss_pred             cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe------ccCce------EEEeccCCeEEEEEccc
Confidence                         00100              11112457788888      78898      99999999999999998


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc---------------------------
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID---------------------------  210 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---------------------------  210 (351)
                        |.....+-  ....|..+|+.++.+.-++.+++++.+|.+.+||+.+....                           
T Consensus       480 --Gi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  480 --GIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             --Ceeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence              76665552  33478999999999999999999999999999999765310                           


Q ss_pred             ---------CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511          211 ---------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       211 ---------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                               ..+.++.+.+|...|++++|||||++|++++.|++|++||+.++.          .+-.+ .-..+++.+.
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~----------lID~~-~vd~~~~sls  624 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT----------LIDGL-LVDSPCTSLS  624 (910)
T ss_pred             eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc----------eeeeE-ecCCcceeeE
Confidence                     012345677899999999999999999999999999999998887          33333 3346689999


Q ss_pred             EeeeCCCcEEEEecCC-CeEEEEecC
Q 048511          282 IIQGKGNHRFVSGADE-KVARVFEAP  306 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~d-g~v~vw~~~  306 (351)
                      |+|  +|++||+...| .-|++|.-.
T Consensus       625 ~SP--ngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  625 FSP--NGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ECC--CCCEEEEEEecCceEEEEEch
Confidence            999  99999999988 679999854

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2e-22  Score=179.06  Aligned_cols=255  Identities=15%  Similarity=0.205  Sum_probs=190.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      |++.||.|++|+...+.  ..-.++.-|...|.+++..          +.+|++|+.+++|.+|.+..++.-. +.....
T Consensus        30 tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~----------s~~f~~~s~~~tv~~y~fps~~~~~-iL~Rft   96 (933)
T KOG1274|consen   30 TCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY----------SNHFLTGSEQNTVLRYKFPSGEEDT-ILARFT   96 (933)
T ss_pred             EecCCCceEEeecCCcc--cCCchhhccCceeEEEeec----------ccceEEeeccceEEEeeCCCCCccc-eeeeee
Confidence            47889999999876621  1112333377788888776          5599999999999999998775432 222234


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      -++..++++.+|..++.|+.+..+++..        .+.+|..+|.++.|+      |++++      ||+.+-||.|++
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~------p~~~f------LAvss~dG~v~i  164 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD------PKGNF------LAVSSCDGKVQI  164 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc------CCCCE------EEEEecCceEEE
Confidence            5788999999999999999999998764        578999999999999      78899      999999999999


Q ss_pred             EeccCCCcceEEEEEecc--cccc-ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEE
Q 048511          153 WQPEKTTGIWMNVVTVGE--LSHS-ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMD  227 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~--~~~~-~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~  227 (351)
                      ||++.  +....++..-.  .... ...+..++|+|++..++....|+.|.+|+..+-+     ....+.  .+...+..
T Consensus       165 w~~~~--~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we-----~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  165 WDLQD--GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE-----LQFKLRDKLSSSKFSD  237 (933)
T ss_pred             EEccc--chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce-----eheeecccccccceEE
Confidence            99998  65554443211  1111 3456779999999999999999999999988753     333333  34455899


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      +.|+|+|+|||+++.||.|.|||..+..          .    ......|.|++|.|  +...+-.-...|...+|
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----------~----~~~~~~Vc~~aw~p--~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHE----------R----HEFKRAVCCEAWKP--NANAITLITALGTLGVS  297 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccch----------h----ccccceeEEEecCC--CCCeeEEEeeccccccC
Confidence            9999999999999999999999997633          1    12234589999988  55555444444444444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=158.64  Aligned_cols=218  Identities=21%  Similarity=0.264  Sum_probs=173.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +||.|-+|+|||+.. .  ..+..+-.|.+.|+++.|.+|      .....|++|+.||.|.+|+......+..+. .+.
T Consensus        58 SGssDetI~IYDm~k-~--~qlg~ll~HagsitaL~F~~~------~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~  127 (362)
T KOG0294|consen   58 SGSSDETIHIYDMRK-R--KQLGILLSHAGSITALKFYPP------LSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHK  127 (362)
T ss_pred             ccCCCCcEEEEeccc-h--hhhcceeccccceEEEEecCC------cchhheeeecCCCcEEEEEcCCeEEeeeec-ccc
Confidence            589999999999988 4  456778889999999999932      233489999999999999998875554443 445


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccce-------EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWV-------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+..++.+|.+++-++-+.+..++.|....|....|       +.+.|+      +.|.+      |+.++.++ |-||
T Consensus       128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~------~~Gd~------F~v~~~~~-i~i~  194 (362)
T KOG0294|consen  128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWS------PQGDH------FVVSGRNK-IDIY  194 (362)
T ss_pred             cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEc------CCCCE------EEEEeccE-EEEE
Confidence            5699999999999999999999999988877655443       458899      67777      88877764 8899


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe--e
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW--S  231 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~--s  231 (351)
                      .+..  -.....+.      ....+.++.|- ++..|++|+.|+.|.+||....     .+...+.+|...|.++.+  .
T Consensus       195 q~d~--A~v~~~i~------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-----~~~~~~~AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  195 QLDN--ASVFREIE------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-----TPLTEFLAHENRVKDIASYTN  260 (362)
T ss_pred             eccc--HhHhhhhh------ccccceeeeec-CCceEEEecCCceEEEeccCCC-----ccceeeecchhheeeeEEEec
Confidence            9887  33322222      22346666663 5678999999999999999875     678899999999999984  4


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |++.+|+|++.||.|+|||++...
T Consensus       261 ~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  261 PEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCceEEEEeccCceEEEEEccccc
Confidence            678899999999999999997664

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.9e-22  Score=175.70  Aligned_cols=237  Identities=12%  Similarity=0.136  Sum_probs=184.4

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV  104 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  104 (351)
                      .+|...-+.|+|.        ++|++|+|++.||.|++|+..... ....+..   .......+...+..|+++..+..+
T Consensus        10 yaht~G~t~i~~d--------~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv   78 (933)
T KOG1274|consen   10 YAHTGGLTLICYD--------PDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTV   78 (933)
T ss_pred             hhccCceEEEEEc--------CCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeecccceEEeeccceE
Confidence            4789999999999        889999999999999999987663 2222221   233344445556688888888777


Q ss_pred             EEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511          105 SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL  176 (351)
Q Consensus       105 ~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      .....        +...+-++.+++|+      .+|++      +|.||.|-.|++-++..  ......+.     +|..
T Consensus        79 ~~y~fps~~~~~iL~Rftlp~r~~~v~------g~g~~------iaagsdD~~vK~~~~~D--~s~~~~lr-----gh~a  139 (933)
T KOG1274|consen   79 LRYKFPSGEEDTILARFTLPIRDLAVS------GSGKM------IAAGSDDTAVKLLNLDD--SSQEKVLR-----GHDA  139 (933)
T ss_pred             EEeeCCCCCccceeeeeeccceEEEEe------cCCcE------EEeecCceeEEEEeccc--cchheeec-----ccCC
Confidence            65543        33345578999999      89999      99999999999999988  55555555     8999


Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------c-cccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-------H-FAAVMDISWSRSSDYLLSVSHDQTTRV  248 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------~-~~~v~~v~~sp~~~~l~s~~~dg~i~v  248 (351)
                      +|.++.|+|.+++||+.+.||.|++||+.++.     +..++.+       - ...+..++|+|++..|+..+.|+.|.+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV  214 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccch-----hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence            99999999999999999999999999998863     2333322       1 345677999999888888889999999


Q ss_pred             EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |+...-...      + .+ +...+...+.+++|+|  +|.|||+++-||.|.|||.+.
T Consensus       215 y~r~~we~~------f-~L-r~~~~ss~~~~~~wsP--nG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  215 YSRKGWELQ------F-KL-RDKLSSSKFSDLQWSP--NGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EccCCceeh------e-ee-cccccccceEEEEEcC--CCcEEeeeccCCcEEEEeccc
Confidence            998766521      1 11 2233444599999999  899999999999999999873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=8.7e-23  Score=170.19  Aligned_cols=238  Identities=13%  Similarity=0.214  Sum_probs=190.8

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeecc-cccceeeeEeeecCCeEEecCCce
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQST-YRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .|..-|.++.++        ...++++||+. |.|+|||+.....   +..+... ...-++++...++|+.|++|+...
T Consensus       417 ~HGEvVcAvtIS--------~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas  487 (705)
T KOG0639|consen  417 AHGEVVCAVTIS--------NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS  487 (705)
T ss_pred             ccCcEEEEEEec--------CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence            578888889999        67889999995 7799999975432   1111111 244677889999999999999988


Q ss_pred             eEEEEEecc----------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          103 QVSVESLLI----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       103 ~~~~~~~~~----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                      .+.+|....          .-.-..+.++.+      +|.++      .+++..||.|.|||+..  ...+..++     
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~s------pDakv------cFsccsdGnI~vwDLhn--q~~Vrqfq-----  548 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAIS------PDAKV------CFSCCSDGNIAVWDLHN--QTLVRQFQ-----  548 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcC------Cccce------eeeeccCCcEEEEEccc--ceeeeccc-----
Confidence            888887422          122345678888      78888      99999999999999998  66666666     


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      +|...+.||.++++|..|.+|+-|.+|+.||+++++    + +.+. ...+.|.++.++|++.+|+.|-+++.+.|....
T Consensus       549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregr----q-lqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR----Q-LQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             CCCCCceeEEecCCCceeecCCCccceeehhhhhhh----h-hhhh-hhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            999999999999999999999999999999999974    1 2221 245689999999999999999999999888775


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~  311 (351)
                      ...           ...+..|..-|.++.|.+  -|+++++.+.|..+..|..+ |..+.
T Consensus       623 kp~-----------kyqlhlheScVLSlKFa~--cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  623 KPE-----------KYQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             Ccc-----------ceeecccccEEEEEEecc--cCceeeecCchhhhhhccCcccccee
Confidence            543           233446788899999999  89999999999999999987 55443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=2.9e-22  Score=162.34  Aligned_cols=229  Identities=17%  Similarity=0.213  Sum_probs=171.2

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      .+.||+++|..++|+    |   .+...|||||.|.+|.||++..+.......                           
T Consensus        76 ~v~GHt~~vLDi~w~----P---fnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------  121 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWC----P---FNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------  121 (472)
T ss_pred             CccCccccccccccC----c---cCCceeecCCCCceEEEEECCCcccccCcc---------------------------
Confidence            457999999999999    4   567899999999999999998766544333                           


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                       .....+.+|...|--++|+|     ...+.      |++++.|.+|.+||+.+  ++.+.++      .|...|+++.|
T Consensus       122 -epvv~L~gH~rrVg~V~wHP-----tA~NV------Llsag~Dn~v~iWnv~t--geali~l------~hpd~i~S~sf  181 (472)
T KOG0303|consen  122 -EPVVELYGHQRRVGLVQWHP-----TAPNV------LLSAGSDNTVSIWNVGT--GEALITL------DHPDMVYSMSF  181 (472)
T ss_pred             -cceEEEeecceeEEEEeecc-----cchhh------HhhccCCceEEEEeccC--Cceeeec------CCCCeEEEEEe
Confidence             22356789999999999998     55667      99999999999999999  6655543      38899999999


Q ss_pred             cCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc-cEEEEEeecCCCEEEEEe---CCCcEEEEcCCCcccccc
Q 048511          184 SPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~  259 (351)
                      +.+|.+|++.+.|..|+|||.+++     +.+..-.+|.+ .-..+.|-.++.++.||-   .++.+.+||..+.+... 
T Consensus       182 n~dGs~l~TtckDKkvRv~dpr~~-----~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~-  255 (472)
T KOG0303|consen  182 NRDGSLLCTTCKDKKVRVIDPRRG-----TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI-  255 (472)
T ss_pred             ccCCceeeeecccceeEEEcCCCC-----cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-
Confidence            999999999999999999999998     44666667765 344566888888555542   47899999988766211 


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecC--chhhhceeecccccc
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAP--LSFLKTLNHATFQES  321 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~~  321 (351)
                            ....+ ..+..|.---|.+  |..++ ++|-.|+.||.|.+.  ..++..|+.+...+.
T Consensus       256 ------~~~el-DtSnGvl~PFyD~--dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep  311 (472)
T KOG0303|consen  256 ------ALQEL-DTSNGVLLPFYDP--DTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP  311 (472)
T ss_pred             ------eeEEe-ccCCceEEeeecC--CCCEEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence                  11122 1222344444555  55554 567799999999987  334666766654333

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.8e-22  Score=163.88  Aligned_cols=224  Identities=17%  Similarity=0.250  Sum_probs=164.2

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE-----EE
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV-----SV  106 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~  106 (351)
                      -.|++|.--..+ .+..|+++|.|..|..|.|||+.-...+.-.                   +..|......     +.
T Consensus       176 PLC~ewld~~~~-~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~-------------------~~LGs~~sk~~~k~~k~  235 (463)
T KOG0270|consen  176 PLCIEWLDHGSK-SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPC-------------------VTLGSKASKKKKKKGKR  235 (463)
T ss_pred             chhhhhhhcCCC-CCCCcceEEEeccCceeEEeccccccccccc-------------------eeechhhhhhhhhhccc
Confidence            356776511111 2255789999999999999998743322100                   0011100000     00


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (351)
                      -....+|++.|..+.|+-     ...+.      ||+||.|.+|++||+.+  +++...+.     .|...|.++.|+|.
T Consensus       236 ~~~~~gHTdavl~Ls~n~-----~~~nV------LaSgsaD~TV~lWD~~~--g~p~~s~~-----~~~k~Vq~l~wh~~  297 (463)
T KOG0270|consen  236 SNSASGHTDAVLALSWNR-----NFRNV------LASGSADKTVKLWDVDT--GKPKSSIT-----HHGKKVQTLEWHPY  297 (463)
T ss_pred             ccccccchHHHHHHHhcc-----cccee------EEecCCCceEEEEEcCC--CCcceehh-----hcCCceeEEEecCC
Confidence            112357999999999983     22345      99999999999999999  88877776     78899999999995


Q ss_pred             -CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511          187 -GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       187 -~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                       ..+|++|+.|+++.++|++...    ..-..+ ...+.|-.++|.|.. ..++++..||+|+-+|+|+..         
T Consensus       298 ~p~~LLsGs~D~~V~l~D~R~~~----~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---------  363 (463)
T KOG0270|consen  298 EPSVLLSGSYDGTVALKDCRDPS----NSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---------  363 (463)
T ss_pred             CceEEEeccccceEEeeeccCcc----ccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---------
Confidence             5689999999999999998532    112222 245779999999965 457778899999999999875         


Q ss_pred             EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          265 HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      +++...++|..+|.++++++ ....++++++.|+.|++|++...
T Consensus       364 ~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  364 KPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             CceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCC
Confidence            26667789999999999987 45789999999999999998743

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.8e-22  Score=170.51  Aligned_cols=243  Identities=15%  Similarity=0.156  Sum_probs=173.0

Q ss_pred             CCCCCceEEEEEccC-----CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511            1 MGGLDNKIHLYRGQR-----TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         1 tg~~dg~i~vw~~~~-----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~   75 (351)
                      +|+.||+|.+|+++.     .+.++++.+|.+|.++|.|+++.        .++..+++|+.||+|+.|++......-..
T Consensus       311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~--------~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP--------SNGEHCYSGGIDGTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec--------CCceEEEeeccCceeeeeccCCCCCcccc
Confidence            578999999999932     24568899999999999999999        89999999999999999988632211110


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      ..+                         ..+...+.||++.|+.++++      .....      |++++.||++++|+.
T Consensus       383 ~dp-------------------------~vl~~~l~Ghtdavw~l~~s------~~~~~------Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  383 YDP-------------------------SVLSGTLLGHTDAVWLLALS------STKDR------LLSCSSDGTVRLWEP  425 (577)
T ss_pred             cCc-------------------------chhccceeccccceeeeeec------ccccc------eeeecCCceEEeecc
Confidence            000                         01234578999999999999      56666      999999999999998


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccc-------cccccEEE
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------GHFAAVMD  227 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~~~~~v~~  227 (351)
                      ..  ... .++..   ......-.++.+-... .++++...-+.--++++.....     +..+.       .....+..
T Consensus       426 ~~--~~~-~~f~~---~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-----~~~~~s~~~~~~~~~~~in~  494 (577)
T KOG0642|consen  426 TE--ESP-CTFGE---PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-----LLIFESSASPGPRRYPQINK  494 (577)
T ss_pred             CC--cCc-cccCC---ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-----eeeccccCCCcccccCccce
Confidence            87  332 22221   1222233455553332 2233333333333444433311     11111       11235777


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-  306 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-  306 (351)
                      +.++|...+.+++..|+.|+++|..++.          .+.....|...++++++.|  ++-+|++++.|+.+++|.+. 
T Consensus       495 vVs~~~~~~~~~~hed~~Ir~~dn~~~~----------~l~s~~a~~~svtslai~~--ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  495 VVSHPTADITFTAHEDRSIRFFDNKTGK----------ILHSMVAHKDSVTSLAIDP--NGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             EEecCCCCeeEecccCCceecccccccc----------cchheeeccceecceeecC--CCceEEeecCCceeehhhccc
Confidence            8899999999999999999999998887          7777778988999999999  99999999999999999986 


Q ss_pred             chhhh
Q 048511          307 LSFLK  311 (351)
Q Consensus       307 ~~~~~  311 (351)
                      ..+..
T Consensus       563 k~~~~  567 (577)
T KOG0642|consen  563 KTCVL  567 (577)
T ss_pred             hheee
Confidence            44433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=4.4e-21  Score=158.23  Aligned_cols=269  Identities=17%  Similarity=0.127  Sum_probs=188.5

Q ss_pred             CCCCCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-c
Q 048511            1 MGGLDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-T   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~   78 (351)
                      +|+.-|+|-+||+.++ .....+..+..|.++|.+|.|+    |   .+...+++.|.||+|++-|++.......... .
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~----P---~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~  277 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFS----P---ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT  277 (498)
T ss_pred             EccCCCcEEEEecCCCCCccCceEEeccCCccccceEec----C---CChhheeeeccCceeeeeeecchhhHHHhhcCc
Confidence            4788899999999531 2234566778899999999999    4   4667899999999999999987643322221 1


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .......+.++.+...++.++.-+...++..         +.-|...|.+++++|     ....+      |+|++.|++
T Consensus       278 d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP-----~~p~~------laT~s~D~T  346 (498)
T KOG4328|consen  278 DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP-----VCPWF------LATASLDQT  346 (498)
T ss_pred             cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC-----CCchh------eeecccCcc
Confidence            2234456667777777777666665544432         455888999999998     55567      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc---cCcccCccccccccccc----
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV---GVDIDNWQPQKVPSGHF----  222 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~~~~----  222 (351)
                      ++|||++...++..   .+-....|...|.++.|+|.+-.|++.+.|..|+|||..   ..    ..+..++. |.    
T Consensus       347 ~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~~~I~-Hn~~t~  418 (498)
T KOG4328|consen  347 AKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPLGTIP-HNNRTG  418 (498)
T ss_pred             eeeeehhhhcCCCC---cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCccceee-ccCccc
Confidence            99999997433321   011123688899999999988889999999999999984   21    12232222 22    


Q ss_pred             cc--EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-ceeE-EEEeeeCCCc-EEEEecCC
Q 048511          223 AA--VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-DINC-VTIIQGKGNH-RFVSGADE  297 (351)
Q Consensus       223 ~~--v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~~-~l~s~~~d  297 (351)
                      .+  .....|.|+..++++|..-..|-|+|-..++          .+..+..... .|.+ ..|+|  -+. +++.++..
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q----------~v~el~~P~~~tI~~vn~~HP--~~~~~~aG~~s~  486 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ----------MVCELHDPESSTIPSVNEFHP--MRDTLAAGGNSS  486 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCCCE----------EeeeccCccccccccceeecc--cccceeccCCcc
Confidence            12  3346899999999999998999999987776          3333222221 3444 46888  455 55566688


Q ss_pred             CeEEEEecCc
Q 048511          298 KVARVFEAPL  307 (351)
Q Consensus       298 g~v~vw~~~~  307 (351)
                      |.|+||.-++
T Consensus       487 Gki~vft~k~  496 (498)
T KOG4328|consen  487 GKIYVFTNKK  496 (498)
T ss_pred             ceEEEEecCC
Confidence            9999997654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=7.5e-21  Score=148.29  Aligned_cols=276  Identities=15%  Similarity=0.159  Sum_probs=196.6

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-------CcEEEEecCCCccc----
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-------KVIRIWKLALRGSS----   72 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-------g~i~iwd~~~~~~~----   72 (351)
                      .|+.|.+.+++..+.......|..|.+.|+.++-+    |   .+.+.|+|+-.+       -.+.||.+......    
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~----P---~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~  110 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS----P---FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS  110 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcC----C---CCCceEEEEEeccCCCcceeeEEEEecccccCccccc
Confidence            36777777776633333445677889999999999    3   466778877542       23789998754322    


Q ss_pred             -----ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------------ccccccceEEEEecCCCCCCCCCc
Q 048511           73 -----ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------------LIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        73 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                           ..+....-..+.++.|.|++..+++-.. ..+.++..              -.+|....++-+|+|.    .+++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~d-n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH----Hdgn  185 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNSDKLASMDD-NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH----HDGN  185 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCCCeeEEecc-CceEEEEcccCcchheeecccccccccceecccccCCC----Cccc
Confidence                 2222222446789999999888877552 23322221              1235566788899986    4677


Q ss_pred             ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCc
Q 048511          134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~  212 (351)
                      .      +++. .|+++..||+++  ......+.    ..|...+..+.|+|+.+ +|++++.||.|++||.+..+    
T Consensus       186 q------v~tt-~d~tl~~~D~RT--~~~~~sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----  248 (370)
T KOG1007|consen  186 Q------VATT-SDSTLQFWDLRT--MKKNNSIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----  248 (370)
T ss_pred             e------EEEe-CCCcEEEEEccc--hhhhcchh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----
Confidence            7      6665 688999999998  44333333    36777899999999876 67888899999999998875    


Q ss_pred             ccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcccccc-----------------Ccc--ceEEeccccc
Q 048511          213 QPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLM-----------------GEN--SWHEVARPQV  272 (351)
Q Consensus       213 ~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~-----------------~~~--~~~~~~~~~~  272 (351)
                      .+++.+.+|..+|++|.|+|.. +++++++.|..|.+|....-...+.                 ..+  .-..+.++..
T Consensus       249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde  328 (370)
T KOG1007|consen  249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE  328 (370)
T ss_pred             ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence            7899999999999999999965 5678999999999997654331110                 000  0113445667


Q ss_pred             cccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      |...|++++|+. .|.-+||+-+.||++.|=.++...
T Consensus       329 hEDSVY~~aWSs-adPWiFASLSYDGRviIs~V~r~~  364 (370)
T KOG1007|consen  329 HEDSVYALAWSS-ADPWIFASLSYDGRVIISSVPRFL  364 (370)
T ss_pred             cccceEEEeecc-CCCeeEEEeccCceEEeecCChhh
Confidence            888999999997 578889999999999998877443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.89  E-value=6.1e-22  Score=165.60  Aligned_cols=212  Identities=17%  Similarity=0.242  Sum_probs=159.4

Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEe-------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESL-------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ...+.++++.|.|..+++|+.++.+.+|..             .......|.+++|+      +.+..      |++.+.
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys------~Tg~~------iLvvsg  234 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS------VTGDQ------ILVVSG  234 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec------CCCCe------EEEEec
Confidence            445678899999999999999999988763             12234579999999      67777      888888


Q ss_pred             CCeEEEEeccCCCcceEEEEE-------eccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccc-
Q 048511          147 DKTMMIWQPEKTTGIWMNVVT-------VGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKV-  217 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-  217 (351)
                      ...++|+|...  .++....+       +....+|...++|.+|+|.. ..+++++.||++++||++..+.. .+.++. 
T Consensus       235 ~aqakl~DRdG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k  311 (641)
T KOG0772|consen  235 SAQAKLLDRDG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTK  311 (641)
T ss_pred             CcceeEEccCC--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeec
Confidence            88999999775  33333222       22346888999999999976 48899999999999999765321 111111 


Q ss_pred             -cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc--ceeEEEEeeeCCCcEEEEe
Q 048511          218 -PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH--DINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       218 -~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~  294 (351)
                       ..+..-.++.++|+|++++||+|+.||+|.+|+.......     .  .+..-.+|..  .|+|++|++  +|++|++-
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----p--~~~vk~AH~~g~~Itsi~FS~--dg~~LlSR  382 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----P--VMKVKDAHLPGQDITSISFSY--DGNYLLSR  382 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-----c--ceEeeeccCCCCceeEEEecc--ccchhhhc
Confidence             1233447889999999999999999999999998655421     1  2222345655  799999999  99999999


Q ss_pred             cCCCeEEEEecC--chhhhceee
Q 048511          295 ADEKVARVFEAP--LSFLKTLNH  315 (351)
Q Consensus       295 ~~dg~v~vw~~~--~~~~~~~~~  315 (351)
                      +.|+.+++||+.  .+.+.+..+
T Consensus       383 g~D~tLKvWDLrq~kkpL~~~tg  405 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLNVRTG  405 (641)
T ss_pred             cCCCceeeeeccccccchhhhcC
Confidence            999999999987  455554443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.9e-21  Score=152.34  Aligned_cols=262  Identities=13%  Similarity=0.094  Sum_probs=184.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|.|||+.+ -  ..-..+.+|..+|++++|+        ++|+.|+|+|.|..|++||+..+..+..+..  .
T Consensus        40 vGc~nG~vvI~D~~T-~--~iar~lsaH~~pi~sl~WS--------~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~  106 (405)
T KOG1273|consen   40 VGCANGRVVIYDFDT-F--RIARMLSAHVRPITSLCWS--------RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--D  106 (405)
T ss_pred             eeccCCcEEEEEccc-c--chhhhhhccccceeEEEec--------CCCCEeeeecCCceeEEEeccCCCceeEEEc--c
Confidence            488999999999998 3  3556789999999999999        8999999999999999999999987765553  4


Q ss_pred             cceeeeEeeecCCeEEec--CCceeEEE------EEeccccc-----cceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           81 KEVISLASYIEGPVLVAG--SSSYQVSV------ESLLIGHE-----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~--~~~~~~~~------~~~~~~h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      .++....|+|-....+++  -....+.+      ...+....     ....+..|.      +.|++      +.+|...
T Consensus       107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd------r~g~y------IitGtsK  174 (405)
T KOG1273|consen  107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD------RRGKY------IITGTSK  174 (405)
T ss_pred             CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc------CCCCE------EEEecCc
Confidence            477777777754432222  11111100      00111000     011122344      67777      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc----cCccccccccc--c
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI----DNWQPQKVPSG--H  221 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~~--~  221 (351)
                      |.+.++|..+  .+++..+++..    ...|.++.++..|+.|+.-+.|..|+.|+++.-..    ....+.+.++.  .
T Consensus       175 Gkllv~~a~t--~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN  248 (405)
T KOG1273|consen  175 GKLLVYDAET--LECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN  248 (405)
T ss_pred             ceEEEEecch--heeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence            9999999999  77777776422    35789999999999999999999999999863211    01122222221  2


Q ss_pred             cccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEecCCCe
Q 048511          222 FAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      ...-.+++|+.+|.|++.++. .-.++||....+.          .+..+.+.. .....+.|+|  -...+++- ..|.
T Consensus       249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs----------LVKILhG~kgE~l~DV~whp--~rp~i~si-~sg~  315 (405)
T KOG1273|consen  249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS----------LVKILHGTKGEELLDVNWHP--VRPIIASI-ASGV  315 (405)
T ss_pred             hhhhhheeecCCccEEEeccccceeEEEEecCCcc----------eeeeecCCchhheeeccccc--ceeeeeec-cCCc
Confidence            234567899999999887764 5679999988776          444444443 3478899999  45556665 8899


Q ss_pred             EEEEecC
Q 048511          300 ARVFEAP  306 (351)
Q Consensus       300 v~vw~~~  306 (351)
                      |++|...
T Consensus       316 v~iw~~~  322 (405)
T KOG1273|consen  316 VYIWAVV  322 (405)
T ss_pred             eEEEEee
Confidence            9999853

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=1.3e-21  Score=169.78  Aligned_cols=224  Identities=17%  Similarity=0.203  Sum_probs=184.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|..-|.|+||++.. -  .....+.+|...|.|+.|+.   |.  -..++||+++.|+.|.|+|+...-.+......+.
T Consensus       476 sGDr~GnlrVy~Lq~-l--~~~~~~eAHesEilcLeyS~---p~--~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS  547 (1080)
T KOG1408|consen  476 SGDRGGNLRVYDLQE-L--EYTCFMEAHESEILCLEYSF---PV--LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS  547 (1080)
T ss_pred             ccCccCceEEEEehh-h--hhhhheecccceeEEEeecC---ch--hhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence            467789999999987 3  45567889999999999993   22  3457999999999999999988877777777778


Q ss_pred             cceeeeEeeecC--CeEEecCCceeEEEEE--------ecccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           81 KEVISLASYIEG--PVLVAGSSSYQVSVES--------LLIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        81 ~~~~~~~~~~~~--~~l~~~~~~~~~~~~~--------~~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      ..++++.|...|  ..+++++.+..+.+..        .+..|     ...++.+++.      |...+      +++++
T Consensus       548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd------p~~k~------v~t~c  615 (1080)
T KOG1408|consen  548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD------PTSKL------VVTVC  615 (1080)
T ss_pred             cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeC------CCcce------EEEEe
Confidence            889999998877  5566655555442211        11222     2458899999      67778      99999


Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      .|+.|+|||++.  ++..+.|+-.  ..|.+....+...|.|.|+++.+.|+++.+||+.++     .++.++.+|...|
T Consensus       616 QDrnirif~i~s--gKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-----EcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  616 QDRNIRIFDIES--GKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-----ECVAQMTGHSEAV  686 (1080)
T ss_pred             cccceEEEeccc--cceeeeeccc--ccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-----hhhhhhcCcchhe
Confidence            999999999999  8877777632  356677888999999999999999999999999998     6799999999999


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       687 TG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999854

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=9.9e-22  Score=163.70  Aligned_cols=207  Identities=14%  Similarity=0.157  Sum_probs=165.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+..+.|+|||++. +  .+.+.+++|.+.|++|.++        ....+||+++..|.|.|..+.++.....+..   
T Consensus        96 sgG~~~~Vkiwdl~~-k--l~hr~lkdh~stvt~v~YN--------~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~---  161 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRA-K--LIHRFLKDHQSTVTYVDYN--------NTDEYIASVSDGGDIIIHGTKTKQKTTTFTI---  161 (673)
T ss_pred             ccCcCceeeehhhHH-H--HHhhhccCCcceeEEEEec--------CCcceeEEeccCCcEEEEecccCccccceec---
Confidence            488899999999997 4  4566789999999999999        8899999999999999999988765433321   


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                     +....|.-+.|+|     ....+      |.+++.+|.|.+||+..  .
T Consensus       162 -------------------------------~sgqsvRll~ys~-----skr~l------L~~asd~G~VtlwDv~g--~  197 (673)
T KOG4378|consen  162 -------------------------------DSGQSVRLLRYSP-----SKRFL------LSIASDKGAVTLWDVQG--M  197 (673)
T ss_pred             -------------------------------CCCCeEEEeeccc-----cccee------eEeeccCCeEEEEeccC--C
Confidence                                           1233466888996     33445      89999999999999987  3


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS  239 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  239 (351)
                      .....+    ...|..+...|+|+|.. .+|++.+.|..|.+||.+...     ....+. ...+...++|+++|.+|+.
T Consensus       198 sp~~~~----~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-----s~~~l~-y~~Plstvaf~~~G~~L~a  267 (673)
T KOG4378|consen  198 SPIFHA----SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-----STDRLT-YSHPLSTVAFSECGTYLCA  267 (673)
T ss_pred             Ccccch----hhhccCCcCcceecCCccceEEEecccceEEEeeccccc-----ccceee-ecCCcceeeecCCceEEEe
Confidence            333222    24788899999999965 578899999999999998752     233332 4557899999999999999


Q ss_pred             EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      |...|.|..||++..+.         ++....+|...|++++|-+
T Consensus       268 G~s~G~~i~YD~R~~k~---------Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  268 GNSKGELIAYDMRSTKA---------PVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             ecCCceEEEEecccCCC---------CceEeeecccceeEEEeee
Confidence            99999999999998773         6667778999999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.7e-21  Score=160.60  Aligned_cols=222  Identities=18%  Similarity=0.217  Sum_probs=167.6

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .....++-|.+.|++++|+    |.  .+.+++|+|..-|.|-+||+.+.+....                         
T Consensus       177 ~~~~v~kv~~~Rit~l~fH----Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d-------------------------  225 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFH----PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKD-------------------------  225 (498)
T ss_pred             eecceeEecccceEEEEec----cc--CcceEEEEccCCCcEEEEecCCCCCccC-------------------------
Confidence            3345566789999999999    43  3447899999999999999973322110                         


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                            -...+..|..+|.++.|+|     .+...      +.+.|.||+|++-|++.  ......+.   .......+.
T Consensus       226 ------~v~~f~~hs~~Vs~l~F~P-----~n~s~------i~ssSyDGtiR~~D~~~--~i~e~v~s---~~~d~~~fs  283 (498)
T KOG4328|consen  226 ------GVYLFTPHSGPVSGLKFSP-----ANTSQ------IYSSSYDGTIRLQDFEG--NISEEVLS---LDTDNIWFS  283 (498)
T ss_pred             ------ceEEeccCCccccceEecC-----CChhh------eeeeccCceeeeeeecc--hhhHHHhh---cCccceeee
Confidence                  1123567999999999998     55667      99999999999999997  32222221   113445677


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccc
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASL  258 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~  258 (351)
                      ++.|+.+...++.+..=|...+||+++..    .....+.-|...|+.|+++|... +|+|++.|++.+|||++......
T Consensus       284 ~~d~~~e~~~vl~~~~~G~f~~iD~R~~~----s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  284 SLDFSAESRSVLFGDNVGNFNVIDLRTDG----SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             eccccCCCccEEEeecccceEEEEeecCC----ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence            88898888888888777899999999875    33455566888999999999654 58999999999999998765322


Q ss_pred             cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                          .  ++-....|...|.+..|+|  .+..|++-+.|..|||||..
T Consensus       360 ----s--p~lst~~HrrsV~sAyFSP--s~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  360 ----S--PFLSTLPHRRSVNSAYFSP--SGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             ----C--cceecccccceeeeeEEcC--CCCceEeeccCCceEEeecc
Confidence                1  1222336888999999999  66669999999999999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.6e-21  Score=151.46  Aligned_cols=274  Identities=17%  Similarity=0.213  Sum_probs=186.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--   79 (351)
                      +...|+|++||..+ +  ..+..+++|...++.+.|.    .+  .....+.+|+.||+|++||++.......+....  
T Consensus        46 ~lSngsv~lyd~~t-g--~~l~~fk~~~~~~N~vrf~----~~--ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   46 SLSNGSVRLYDKGT-G--QLLEEFKGPPATTNGVRFI----SC--DSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             EecCCeEEEEeccc-h--hhhheecCCCCcccceEEe----cC--CCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            45789999999999 6  4577899999999999998    22  246789999999999999999877655444333  


Q ss_pred             ccceeeeEeeecCCeEEecCCce----eEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           80 RKEVISLASYIEGPVLVAGSSSY----QVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      ..+..+++....++++++|....    .+.+|.          ....|.+.|+++.|+|     .+.++      |++||
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP-----~~pnl------LlSGS  185 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP-----SDPNL------LLSGS  185 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC-----CCCCe------EEeec
Confidence            23666777777888888875432    222322          2456999999999998     66677      99999


Q ss_pred             cCCeEEEEeccCCCc--ceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCccccccccc--
Q 048511          146 MDKTMMIWQPEKTTG--IWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--  220 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--  220 (351)
                      .||.|.+||++....  .....+      .+...|.++.|...+ +.|.+-+...+..+|+++.+....+.....+..  
T Consensus       186 vDGLvnlfD~~~d~EeDaL~~vi------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d  259 (376)
T KOG1188|consen  186 VDGLVNLFDTKKDNEEDALLHVI------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD  259 (376)
T ss_pred             ccceEEeeecCCCcchhhHHHhh------cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence            999999999986311  111222      355679999998776 568888999999999998764321111111110  


Q ss_pred             -----ccccEEEEEeec-CCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEE
Q 048511          221 -----HFAAVMDISWSR-SSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       221 -----~~~~v~~v~~sp-~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~  292 (351)
                           .-..+-.. .+| +...++.++. -+...++-+.....    ....+.+..+++ |..-|+++.|..  .+.++.
T Consensus       260 ~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s----~~~~~~~a~l~g~~~eiVR~i~~~~--~~~~l~  332 (376)
T KOG1188|consen  260 LRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSS----GSLLTEPAILQGGHEEIVRDILFDV--KNDVLY  332 (376)
T ss_pred             HHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccc----ccccCccccccCCcHHHHHHHhhhc--ccceee
Confidence                 01112111 223 3445555544 45666665542110    113345566666 555588888887  789999


Q ss_pred             EecCCCeEEEEecCch
Q 048511          293 SGADEKVARVFEAPLS  308 (351)
Q Consensus       293 s~~~dg~v~vw~~~~~  308 (351)
                      +||+||.+.+|..+..
T Consensus       333 TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVEDA  348 (376)
T ss_pred             ccCCCceEEEEecCCc
Confidence            9999999999996533

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=150.56  Aligned_cols=251  Identities=12%  Similarity=0.099  Sum_probs=172.9

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      +...+++|.+.|+++.|.        .++ +|.+|..-|.|++|++.+..............+..+..-|+ ..+.+-++
T Consensus         6 P~fvLRp~~~~v~s~~fq--------a~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR   75 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQ--------ANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGR   75 (323)
T ss_pred             CeeEeccccchheehhhc--------cch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCC
Confidence            456778999999999998        544 59999999999999999887655544333334444443333 12222222


Q ss_pred             ceeEEEEEe-------------------------------------------------------------ccccccceEE
Q 048511          101 SYQVSVESL-------------------------------------------------------------LIGHEDWVYS  119 (351)
Q Consensus       101 ~~~~~~~~~-------------------------------------------------------------~~~h~~~v~~  119 (351)
                      +..+.+|..                                                             -.+..+.+.|
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            222111110                                                             0011222333


Q ss_pred             EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE-----eccccccccceEEEEEcCCCCEEEEEe
Q 048511          120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT-----VGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      ..+.-     .    |....+++.|.++|.+.+||+.+  +..+..++     ......|..++.++.+.+.-..=++++
T Consensus       156 ~~~~~-----~----c~s~~lllaGyEsghvv~wd~S~--~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg  224 (323)
T KOG0322|consen  156 QDKDH-----A----CGSTFLLLAGYESGHVVIWDLST--GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG  224 (323)
T ss_pred             eeccc-----c----ccceEEEEEeccCCeEEEEEccC--CceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence            33221     1    33345688899999999999998  42222111     112346788999999998777778888


Q ss_pred             eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc
Q 048511          195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG  274 (351)
Q Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                      .+..+..|+++.... ..+....+.-....|..+...||++++||++.|+.||||..++..          ++..+..|.
T Consensus       225 a~dkl~~~Sl~~s~g-slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~----------pLAVLkyHs  293 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTG-SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN----------PLAVLKYHS  293 (323)
T ss_pred             ccccceeeeeccccC-cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC----------chhhhhhhh
Confidence            888999999865310 012222233334568889999999999999999999999998887          888889999


Q ss_pred             cceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          275 HDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ..|++++|+|  +..++|+++.|++|.+|++
T Consensus       294 agvn~vAfsp--d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  294 AGVNAVAFSP--DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceeEEEeCC--CCchhhhccCCceEEeeec
Confidence            9999999999  8899999999999999985

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-20  Score=156.35  Aligned_cols=270  Identities=17%  Similarity=0.167  Sum_probs=196.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecC--CceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcc-cceeec
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHT--DWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGS-SANTQS   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~-~~~~~~   77 (351)
                      ++...++++||+.. -.  ....+..|+  -.+.++.|.        .... .+++.+.|..|++|.-..... +.....
T Consensus         8 aS~gd~~kl~D~s~-~~--~~~~~~~~t~~pg~~s~~w~--------~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSD-LE--TKSEYVHQTAEPGDFSFNWQ--------RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             eccCCceEEeeccc-cc--CccccccCCCCCcceeeecc--------ccceEEEeecCCceeEEEecccCCCCccceeec
Confidence            45566899999876 21  112222222  248899998        3332 233446788999997654311 222222


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .......|++......++++|+..+.+++|.        .+++|.+.|+++.++      ....+      ||+++..|.
T Consensus        77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN------~~Dey------iAsvs~gGd  144 (673)
T KOG4378|consen   77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN------NTDEY------IASVSDGGD  144 (673)
T ss_pred             cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec------CCcce------eEEeccCCc
Confidence            2233455666666778999999988887764        478999999999999      77888      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI  228 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v  228 (351)
                      |.|..+.+  +....++..    .....+.-+.|+|..+ +|.+++.+|.|.+||+....    ........|..+...|
T Consensus       145 iiih~~~t--~~~tt~f~~----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~HsAP~~gi  214 (673)
T KOG4378|consen  145 IIIHGTKT--KQKTTTFTI----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHSAPCRGI  214 (673)
T ss_pred             EEEEeccc--Cccccceec----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhccCCcCcc
Confidence            99999998  555555541    2234567899999877 45667888999999998764    3345566799999999


Q ss_pred             EeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511          229 SWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-  306 (351)
Q Consensus       229 ~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-  306 (351)
                      ||+|. ..+|++.+.|+.|.+||++....          ...+ ....+.+.++|.+  +|.+|++|...|.|..||+. 
T Consensus       215 cfspsne~l~vsVG~Dkki~~yD~~s~~s----------~~~l-~y~~Plstvaf~~--~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  215 CFSPSNEALLVSVGYDKKINIYDIRSQAS----------TDRL-TYSHPLSTVAFSE--CGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             eecCCccceEEEecccceEEEeecccccc----------ccee-eecCCcceeeecC--CceEEEeecCCceEEEEeccc
Confidence            99995 56688999999999999987652          2222 3456789999999  99999999999999999987 


Q ss_pred             -chhhhceeecc
Q 048511          307 -LSFLKTLNHAT  317 (351)
Q Consensus       307 -~~~~~~~~~~~  317 (351)
                       ...+.++..|.
T Consensus       282 ~k~Pv~v~sah~  293 (673)
T KOG4378|consen  282 TKAPVAVRSAHD  293 (673)
T ss_pred             CCCCceEeeecc
Confidence             45566665554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=8.1e-21  Score=149.83  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=165.8

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI  111 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (351)
                      -.|+.|+        +.|.+||.|..||.|.|||+.+....                                   +.+.
T Consensus        26 a~~~~Fs--------~~G~~lAvGc~nG~vvI~D~~T~~ia-----------------------------------r~ls   62 (405)
T KOG1273|consen   26 AECCQFS--------RWGDYLAVGCANGRVVIYDFDTFRIA-----------------------------------RMLS   62 (405)
T ss_pred             cceEEec--------cCcceeeeeccCCcEEEEEccccchh-----------------------------------hhhh
Confidence            6899999        88999999999999999999886522                                   3467


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc--------------------
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL--------------------  171 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------  171 (351)
                      +|..+|++++|+      ++|+.      |+++|.|..|.+||+..  +.+++.+.+...                    
T Consensus        63 aH~~pi~sl~WS------~dgr~------LltsS~D~si~lwDl~~--gs~l~rirf~spv~~~q~hp~k~n~~va~~~~  128 (405)
T KOG1273|consen   63 AHVRPITSLCWS------RDGRK------LLTSSRDWSIKLWDLLK--GSPLKRIRFDSPVWGAQWHPRKRNKCVATIME  128 (405)
T ss_pred             ccccceeEEEec------CCCCE------eeeecCCceeEEEeccC--CCceeEEEccCccceeeeccccCCeEEEEEec
Confidence            899999999999      89999      99999999999999998  555555443210                    


Q ss_pred             ----------c-----------ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc-ccEEEEE
Q 048511          172 ----------S-----------HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDIS  229 (351)
Q Consensus       172 ----------~-----------~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~  229 (351)
                                .           .......+..|++.|+++++|...|.+.+||..+-     +++..++-.. ..|..+.
T Consensus       129 ~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-----e~vas~rits~~~IK~I~  203 (405)
T KOG1273|consen  129 ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-----ECVASFRITSVQAIKQII  203 (405)
T ss_pred             CCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-----eeeeeeeechheeeeEEE
Confidence                      0           00001112247778999999999999999999986     5566665544 6788999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCCCcEEEEecC-CCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKGNHRFVSGAD-EKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~-dg~v~vw~~~  306 (351)
                      ++..|+.|+.-+.|+.||.|+++.-..... .....+..+++.  ....=.+++|+.  +|.++++++. -..++||.-.
T Consensus       204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r-~~e~e~~~K~qDvVNk~~Wk~ccfs~--dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  204 VSRKGRFLIINTSDRVIRTYEISDIDDEGR-DGEVEPEHKLQDVVNKLQWKKCCFSG--DGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             EeccCcEEEEecCCceEEEEehhhhcccCc-cCCcChhHHHHHHHhhhhhhheeecC--CccEEEeccccceeEEEEecC
Confidence            999999999999999999999863221000 001111111111  112246788888  8999988874 4579999977


Q ss_pred             -chhhhceeeccccccc
Q 048511          307 -LSFLKTLNHATFQESS  322 (351)
Q Consensus       307 -~~~~~~~~~~~~~~~~  322 (351)
                       |.+++.|.+-.+...-
T Consensus       281 ~GsLVKILhG~kgE~l~  297 (405)
T KOG1273|consen  281 IGSLVKILHGTKGEELL  297 (405)
T ss_pred             CcceeeeecCCchhhee
Confidence             9999999887755544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=8.8e-20  Score=152.43  Aligned_cols=242  Identities=14%  Similarity=0.159  Sum_probs=180.9

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      ....+|.+..+.++.+        |+.+.++|++.|+.+++|+  ..+..  .......+..++.|+|.| .+++|...+
T Consensus       362 ~~v~gh~delwgla~h--------ps~~q~~T~gqdk~v~lW~--~~k~~--wt~~~~d~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  362 LTVQGHGDELWGLATH--------PSKNQLLTCGQDKHVRLWN--DHKLE--WTKIIEDPAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             EEEEecccceeeEEcC--------CChhheeeccCcceEEEcc--CCcee--EEEEecCceeEeeccCcc-eEEEeeccc
Confidence            3557899999999999        8899999999999999999  22222  222334588899999999 888888777


Q ss_pred             eEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          103 QVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       103 ~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      ..-++..       +.....++++++|+      |+|.+      ||.|+.|+.|+||.+..........-+     .+.
T Consensus       429 ~w~V~d~e~~~lv~~~~d~~~ls~v~ys------p~G~~------lAvgs~d~~iyiy~Vs~~g~~y~r~~k-----~~g  491 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTDNEQLSVVRYS------PDGAF------LAVGSHDNHIYIYRVSANGRKYSRVGK-----CSG  491 (626)
T ss_pred             eEEEEecccceeEEEEecCCceEEEEEc------CCCCE------EEEecCCCeEEEEEECCCCcEEEEeee-----ecC
Confidence            6644322       11226789999999      89999      999999999999999874333322222     333


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---------------cccccEEEEEeecCCCEEEEE
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---------------GHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---------------~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      .+|+.+.|++|++++.+-+.|-.|..|....-.  .....+.++               .+...|..++-+.+++++++|
T Consensus       492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~--~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~g  569 (626)
T KOG2106|consen  492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECK--QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASG  569 (626)
T ss_pred             ceeEEeeecCCCceEEeccCceEEEEEccccCc--ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcc
Confidence            789999999999999999999999999443221  111111111               234455666667778899999


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ...|.|++|...-.+..       .+...+.+|+.-|++++|..  +...+++.+.|..|..|++
T Consensus       570 dd~g~v~lf~yPc~s~r-------A~~he~~ghs~~vt~V~Fl~--~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  570 DDFGKVHLFSYPCSSPR-------APSHEYGGHSSHVTNVAFLC--KDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccCceEEEEccccCCCc-------ccceeeccccceeEEEEEee--CCceEEecCCCceEEEEEe
Confidence            99999999987654421       24556678999999999998  6777777779999999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.5e-19  Score=153.74  Aligned_cols=241  Identities=16%  Similarity=0.153  Sum_probs=182.8

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      ..+|.+|+|+        ...+.||.+-.||.|.+|++...-... .+..+....+-+++|+ ++..|.+.+.++.+..|
T Consensus        25 Ps~I~slA~s--------~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   25 PSEIVSLAYS--------HKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW   95 (691)
T ss_pred             ccceEEEEEe--------ccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence            5789999999        778889999999999999998754433 3344556677889999 55555555566666555


Q ss_pred             Ee--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          108 SL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       108 ~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                      ..        +....+.|++++.+      +.+..      ++.|+.||.+..++...  +.......   +...++.|.
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~------p~~~~------l~IgcddGvl~~~s~~p--~~I~~~r~---l~rq~sRvL  158 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAIN------PENTI------LAIGCDDGVLYDFSIGP--DKITYKRS---LMRQKSRVL  158 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeC------Cccce------EEeecCCceEEEEecCC--ceEEEEee---cccccceEE
Confidence            43        34456789999999      56677      99999999777777665  44333222   234568899


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc--ccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP--QKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                      ++.|+|++..+++|+.||.|++||...+.......  +-.+. ....-|++|.|-.++ .|++|..-|+|.+||...+. 
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT-  236 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT-  236 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-
Confidence            99999999999999999999999998764211000  01111 133458888888665 68999999999999998887 


Q ss_pred             cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                               .+.....|...|.|++..+  ++.++++++.|+.|..|...++
T Consensus       237 ---------LiqS~~~h~adVl~Lav~~--~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  237 ---------LIQSHSCHDADVLALAVAD--NEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             ---------hhhhhhhhhcceeEEEEcC--CCCeEEEccCCCceEEEEecCC
Confidence                     6777788999999999998  8899999999999999987643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=5.4e-21  Score=151.56  Aligned_cols=240  Identities=17%  Similarity=0.195  Sum_probs=170.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.-|.|+|.|+.. +  +....+.+|..+|+.+.+.    |   .+.++++++|.|.+||+|++++..++..+      
T Consensus       111 ~G~~GvIrVid~~~-~--~~~~~~~ghG~sINeik~~----p---~~~qlvls~SkD~svRlwnI~~~~Cv~Vf------  174 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVS-G--QCSKNYRGHGGSINEIKFH----P---DRPQLVLSASKDHSVRLWNIQTDVCVAVF------  174 (385)
T ss_pred             ecceeEEEEEecch-h--hhccceeccCccchhhhcC----C---CCCcEEEEecCCceEEEEeccCCeEEEEe------
Confidence            56789999999998 6  5567899999999999999    3   35579999999999999999988765433      


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-  160 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  160 (351)
                                                .-+.||.+.|.++.|+      .++..      |++++.|.++++|++...+- 
T Consensus       175 --------------------------GG~egHrdeVLSvD~~------~~gd~------i~ScGmDhslk~W~l~~~~f~  216 (385)
T KOG1034|consen  175 --------------------------GGVEGHRDEVLSVDFS------LDGDR------IASCGMDHSLKLWRLNVKEFK  216 (385)
T ss_pred             --------------------------cccccccCcEEEEEEc------CCCCe------eeccCCcceEEEEecChhHHh
Confidence                                      3357899999999999      78889      99999999999999984110 


Q ss_pred             ---ceE----------------EEEEe-ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-----C----
Q 048511          161 ---IWM----------------NVVTV-GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-----N----  211 (351)
Q Consensus       161 ---~~~----------------~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~----  211 (351)
                         +..                ..+.. .....|...|-|+.|-  |.++++-+-++.|..|....-+..     .    
T Consensus       217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~  294 (385)
T KOG1034|consen  217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA  294 (385)
T ss_pred             hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence               000                00000 0112344445555553  578899899999999987211100     0    


Q ss_pred             cccccccccccccEEEEE--eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          212 WQPQKVPSGHFAAVMDIS--WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~--~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                      ...+..+.-....|+-+.  |.|-+++||.|...|.|++||+++....     ....+.. ...+..|...+|+.  |+.
T Consensus       295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-----~~ttl~~-s~~~~tVRQ~sfS~--dgs  366 (385)
T KOG1034|consen  295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-----KCTTLTH-SKSGSTVRQTSFSR--DGS  366 (385)
T ss_pred             eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-----cCceEEe-ccccceeeeeeecc--cCc
Confidence            011222333344555554  4566789999999999999999887621     1111111 12235599999998  999


Q ss_pred             EEEEecCCCeEEEEec
Q 048511          290 RFVSGADEKVARVFEA  305 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~  305 (351)
                      +|+...+|+.|--||.
T Consensus       367 ~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  367 ILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEEEEeCCCcEEEEEe
Confidence            9999999999999984

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=3.2e-20  Score=159.28  Aligned_cols=247  Identities=18%  Similarity=0.292  Sum_probs=174.7

Q ss_pred             CCCceEEEEEccCCCceEE--EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            3 GLDNKIHLYRGQRTGKFVR--ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +..|.|-||++...|++.-  +-.+. ....|+.+.|.    |   -+...||.++.||.|++|.+..+........   
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~Wd----P---FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t---  668 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWD----P---FDDERLAVATDDGQINLWRLTANGLPENEMT---  668 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccc-cCceeeecccC----C---CChHHeeecccCceEEEEEeccCCCCcccCC---
Confidence            4578999999988665411  11222 34579999999    4   5788999999999999999987655433322   


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                               ....+.+|...|+++.|+|     -....      |++++.|-+|++||++.  .
T Consensus       669 -------------------------Pe~~lt~h~eKI~slRfHP-----LAadv------La~asyd~Ti~lWDl~~--~  710 (1012)
T KOG1445|consen  669 -------------------------PEKILTIHGEKITSLRFHP-----LAADV------LAVASYDSTIELWDLAN--A  710 (1012)
T ss_pred             -------------------------cceeeecccceEEEEEecc-----hhhhH------hhhhhccceeeeeehhh--h
Confidence                                     2245788999999999998     55667      99999999999999998  5


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc-ccEEEEEeecCCCEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDISWSRSSDYLLS  239 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~s  239 (351)
                      .....+.     +|...|..++|+|+|+.+++.+.||+|++|+.+.++    ++++.-.+.. ..--.|.|.-+|+++++
T Consensus       711 ~~~~~l~-----gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~Eg~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  711 KLYSRLV-----GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVYEGKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             hhhheec-----cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----CccccCCCCccCcceeEEEEecCcEEEE
Confidence            5555555     899999999999999999999999999999998875    4555443322 22345788889999887


Q ss_pred             EeCC----CcEEEEcCCCccccccCccceEEeccccccccc-eeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhc
Q 048511          240 VSHD----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHD-INCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKT  312 (351)
Q Consensus       240 ~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~  312 (351)
                      .+.|    +.|.+||.+.....        .+........+ +.--.+.+ +.+-+|++|-.|..|.+|.+-  ..++-.
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~l~~~--------pl~t~~lDvaps~LvP~YD~-Ds~~lfltGKGD~~v~~yEv~~esPy~lp  852 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQTLDLR--------PLYTQVLDVAPSPLVPHYDY-DSNVLFLTGKGDRFVNMYEVIYESPYLLP  852 (1012)
T ss_pred             ecccccchhhhhhhhhhhccCC--------cceeeeecccCccccccccC-CCceEEEecCCCceEEEEEecCCCceeee
Confidence            7765    57888887655411        11111000000 10111222 346678899999999999964  444444


Q ss_pred             eeec
Q 048511          313 LNHA  316 (351)
Q Consensus       313 ~~~~  316 (351)
                      +..+
T Consensus       853 l~~f  856 (1012)
T KOG1445|consen  853 LAPF  856 (1012)
T ss_pred             cccc
Confidence            4443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.3e-19  Score=149.86  Aligned_cols=239  Identities=13%  Similarity=0.099  Sum_probs=183.4

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee-ecccccceeeeEeeecCC-eEEecCCceeEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT-QSTYRKEVISLASYIEGP-VLVAGSSSYQVSV  106 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~  106 (351)
                      .+.|++|.|+        |...+|++|+.|++++||.+......... ......++.++.|.|+|. .+++++.......
T Consensus       213 ~~~I~sv~FH--------p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  213 HGGITSVQFH--------PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             cCCceEEEec--------CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            3589999999        88899999999999999999865433211 112255788999999999 7777776655544


Q ss_pred             EEe----------ccccc-cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          107 ESL----------LIGHE-DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       107 ~~~----------~~~h~-~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +..          +.++. ..+....++      +++++      |+..+..|.|.+....+  ++++..++      ..
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVS------hd~~f------ia~~G~~G~I~lLhakT--~eli~s~K------ie  344 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVS------HDSNF------IAIAGNNGHIHLLHAKT--KELITSFK------IE  344 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEec------CCCCe------EEEcccCceEEeehhhh--hhhhheee------ec
Confidence            432          33343 346677788      78889      99999999999999998  88887776      35


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      +.|..++|+.+++.|++++.+|.|.+||++..     .+++.+....+ .-+++|.++++.|||+|+..|.|.|||..+.
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~  419 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC  419 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence            67899999999999999999999999999987     45666553221 2356788899999999999999999997654


Q ss_pred             cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecC
Q 048511          255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAP  306 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~  306 (351)
                      ..    ....+++..+..-...|++++|++  +.++||.+|  .+..+|+-.++
T Consensus       420 ~~----s~~PkPik~~dNLtt~Itsl~Fn~--d~qiLAiaS~~~knalrLVHvP  467 (514)
T KOG2055|consen  420 FA----STNPKPIKTVDNLTTAITSLQFNH--DAQILAIASRVKKNALRLVHVP  467 (514)
T ss_pred             hc----cCCCCchhhhhhhheeeeeeeeCc--chhhhhhhhhccccceEEEecc
Confidence            32    123345555555566799999999  999998887  56788888876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=2.9e-19  Score=141.64  Aligned_cols=250  Identities=15%  Similarity=0.204  Sum_probs=177.1

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc------------eeecccccceeeeEe-------eec
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA------------NTQSTYRKEVISLAS-------YIE   91 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~-------~~~   91 (351)
                      -...+.|+        |+|..|++-+.|..+++|++.......            ...-.....+....|       .|+
T Consensus        51 f~kgckWS--------PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~  122 (406)
T KOG2919|consen   51 FLKGCKWS--------PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS  122 (406)
T ss_pred             hhccceeC--------CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc
Confidence            35678899        899999999999999999985321111            111111333344443       356


Q ss_pred             CCeEEecCCceeEEEEEeccc----------ccc---ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511           92 GPVLVAGSSSYQVSVESLLIG----------HED---WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT  158 (351)
Q Consensus        92 ~~~l~~~~~~~~~~~~~~~~~----------h~~---~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  158 (351)
                      ..++++..++..|.+|..+.|          |.+   ...+++|+      +||..      |..| ..+.|+++|+...
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs------~DGeq------lfaG-ykrcirvFdt~Rp  189 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS------PDGEQ------LFAG-YKRCIRVFDTSRP  189 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec------CCCCe------Eeec-ccceEEEeeccCC
Confidence            778888888888888876554          222   34689999      79998      7665 6678999999432


Q ss_pred             CcceEEEE--EeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          159 TGIWMNVV--TVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       159 ~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                       |......  ......+..+-|.+++|+|.. +.+++++...++-||.-...     .++..+-+|.+.|+.++|.++|+
T Consensus       190 -Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  190 -GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             -CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----CceeeecccCCCeeeEEeccCcC
Confidence             2211111  111112345678899999955 58999999999999987775     67888889999999999999999


Q ss_pred             EEEEEeC-CCcEEEEcCCCccccccCccceEEecccccccc-ceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhh
Q 048511          236 YLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-DINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLK  311 (351)
Q Consensus       236 ~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~  311 (351)
                      .|++|+. |-.|..||++....         ++..+..|.. .=..|-|.-.+++++|++|+.||.|++||++  ++...
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~---------pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRD---------PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             eecccccCCCeEEEEeehhccc---------hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            9999875 77899999988762         4455555544 3345555544489999999999999999987  55344


Q ss_pred             ceeec
Q 048511          312 TLNHA  316 (351)
Q Consensus       312 ~~~~~  316 (351)
                      .+..+
T Consensus       335 v~~~~  339 (406)
T KOG2919|consen  335 VTGNY  339 (406)
T ss_pred             ccccc
Confidence            44333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=143.79  Aligned_cols=226  Identities=17%  Similarity=0.223  Sum_probs=169.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCc---eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDW---IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      .+.|.-|++||..+ |++........|.+.   -.+++|+        ++|..|+.| ....|+++|+............
T Consensus       129 ssr~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs--------~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFS--------PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ccccCceeeeeccc-cccccchhhhhhHHhhhhheeEEec--------CCCCeEeec-ccceEEEeeccCCCCCCcchhh
Confidence            46788899999999 876665555556554   4679999        889999855 5789999999544332211110


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  158 (351)
                                                 +.+.-.+..+-+.|++|+|     .+...      ++.++...++-||.-.. 
T Consensus       199 ---------------------------~~~~k~gq~giisc~a~sP-----~~~~~------~a~gsY~q~~giy~~~~-  239 (406)
T KOG2919|consen  199 ---------------------------VTKGKFGQKGIISCFAFSP-----MDSKT------LAVGSYGQRVGIYNDDG-  239 (406)
T ss_pred             ---------------------------hhcccccccceeeeeeccC-----CCCcc------eeeecccceeeeEecCC-
Confidence                                       0011244567799999998     66667      99999999988888766 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCcccccccccccc-cEEE--EEeecCC
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSGHFA-AVMD--ISWSRSS  234 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~-~v~~--v~~sp~~  234 (351)
                       +..+..+-     +|.+.|+.+.|.++|+.|++|+. |-.|..||++...    .++..+..|.. .=..  ....|.+
T Consensus       240 -~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~  309 (406)
T KOG2919|consen  240 -RRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKG  309 (406)
T ss_pred             -CCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCC
Confidence             55555443     89999999999999999999985 6889999999875    66777777765 2223  3456899


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ++|++|+.||.|++||++...         ..+.....+...++.++++|  --.++++++..
T Consensus       310 ~~LasG~tdG~V~vwdlk~~g---------n~~sv~~~~sd~vNgvslnP--~mpilatssGq  361 (406)
T KOG2919|consen  310 EILASGDTDGSVRVWDLKDLG---------NEVSVTGNYSDTVNGVSLNP--IMPILATSSGQ  361 (406)
T ss_pred             ceeeccCCCccEEEEecCCCC---------CcccccccccccccceecCc--ccceeeeccCc
Confidence            999999999999999998744         14555567778899999999  56777777655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.85  E-value=2e-19  Score=155.33  Aligned_cols=252  Identities=16%  Similarity=0.193  Sum_probs=192.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+..+.+||+.. |  ..+.++++|.+-|+|++|+        .+|+++|+|+.|..|.+|+-.-..   ...-.+...+
T Consensus        31 Ag~rlliyD~nd-G--~llqtLKgHKDtVycVAys--------~dGkrFASG~aDK~VI~W~~klEG---~LkYSH~D~I   96 (1081)
T KOG1538|consen   31 AGSRLLVYDTSD-G--TLLQPLKGHKDTVYCVAYA--------KDGKRFASGSADKSVIIWTSKLEG---ILKYSHNDAI   96 (1081)
T ss_pred             cCCEEEEEeCCC-c--ccccccccccceEEEEEEc--------cCCceeccCCCceeEEEecccccc---eeeeccCCee
Confidence            366899999998 7  5678999999999999999        999999999999999999865433   2333456688


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEe----ccc--cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESL----LIG--HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~--h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      .+|.|+|-.+.+++++-.. .-+|..    ...  ....+.+.+|.      .||++      |+.|-.+|+|.|-+-..
T Consensus        97 QCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWt------nDGqy------lalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWT------NDGQY------LALGMFNGTISIRNKNG  163 (1081)
T ss_pred             eEeecCchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeec------CCCcE------EEEeccCceEEeecCCC
Confidence            8999999998888765221 111111    111  23468889999      89999      99999999999986553


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCC-----CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDG-----RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                         +..  ..+....+.+.+|++++|+|..     ..+++.....++.+|.+....      +-.-..-.-...++.+.+
T Consensus       164 ---Eek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------Igk~r~L~FdP~CisYf~  232 (1081)
T KOG1538|consen  164 ---EEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------IGKDRALNFDPCCISYFT  232 (1081)
T ss_pred             ---Ccc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee------ecccccCCCCchhheecc
Confidence               222  2333455778899999999953     478888899999999887743      221122223456889999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|.+++.|+.|+.+.+|-...-           .+.+.......|+.++..|  +++.++.|..||+|..|++-
T Consensus       233 NGEy~LiGGsdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~P--NsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  233 NGEYILLGGSDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKP--NSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCcEEEEccCCCceEEEeecCe-----------EEeeccccceeEEEEEEcc--CCceEEEEEccCeeehhhhH
Confidence            9999999999999999964322           3444444667899999999  99999999999999999965

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.4e-21  Score=173.08  Aligned_cols=244  Identities=14%  Similarity=0.156  Sum_probs=176.1

Q ss_pred             CCCceEEEEEccCC-Cc--eEEEEeeeecCCceeEEEeeCCcccCCCCCc----cEEEEeeCCCcEEEEecCCCccccee
Q 048511            3 GLDNKIHLYRGQRT-GK--FVRACELKGHTDWIRSLDFSLPVCTSGEAIS----ILLVSSSQDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         3 ~~dg~i~vw~~~~~-~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~----~~l~t~~~dg~i~iwd~~~~~~~~~~   75 (351)
                      +.+.++.||.+... ..  ++.+..+.. ....+.++|.        +.+    .+||.|..||.|.+||......-   
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~--------~~g~~~~GlIaGG~edG~I~ly~p~~~~~~---  103 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWG--------SYGSHSHGLIAGGLEDGNIVLYDPASIIAN---  103 (1049)
T ss_pred             ccccccceeeecccCccccccccccccc-cccceeeeec--------ccCCCccceeeccccCCceEEecchhhccC---
Confidence            34666777765531 11  233344432 4578899998        333    36999999999999998753110   


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                                                ....++.....|++.|..+.|++     ..+++      ||+|+.||.|.|||+
T Consensus       104 --------------------------~~~~~la~~~~h~G~V~gLDfN~-----~q~nl------LASGa~~geI~iWDl  146 (1049)
T KOG0307|consen  104 --------------------------ASEEVLATKSKHTGPVLGLDFNP-----FQGNL------LASGADDGEILIWDL  146 (1049)
T ss_pred             --------------------------cchHHHhhhcccCCceeeeeccc-----cCCce------eeccCCCCcEEEecc
Confidence                                      00123345677999999999996     55667      999999999999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeec
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSR  232 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp  232 (351)
                      ...+  .-  +... .......|.+++|+..- ..|++++.+|++.|||++.+     +++..+..+.+  .+..++|+|
T Consensus       147 nn~~--tP--~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-----~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  147 NKPE--TP--FTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-----KPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             CCcC--CC--CCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-----CcccccccCCCccceeeeeeCC
Confidence            8732  11  1111 11345679999998754 56788888899999999987     34555554443  477899999


Q ss_pred             CC-CEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-c
Q 048511          233 SS-DYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-L  307 (351)
Q Consensus       233 ~~-~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~  307 (351)
                      +. ..|++++.|   -.|.+||+|....         ++..+++|...|.++.|++ .|..++++++.|+.|.+|+.+ +
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~ass---------P~k~~~~H~~GilslsWc~-~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASS---------PLKILEGHQRGILSLSWCP-QDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCC---------chhhhcccccceeeeccCC-CCchhhhcccCCCCeeEecCCCc
Confidence            76 446666654   4699999987763         6666789999999999999 466999999999999999987 7


Q ss_pred             hhhhceee
Q 048511          308 SFLKTLNH  315 (351)
Q Consensus       308 ~~~~~~~~  315 (351)
                      +.+..+-.
T Consensus       287 Evl~~~p~  294 (1049)
T KOG0307|consen  287 EVLGELPA  294 (1049)
T ss_pred             eEeeecCC
Confidence            77777665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.5e-19  Score=143.51  Aligned_cols=246  Identities=19%  Similarity=0.254  Sum_probs=175.2

Q ss_pred             ceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            6 NKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      +.+.+|+...++....+..+.  .|......++|+    -+++....+||.+|.-|.|+|.|+.+++..           
T Consensus        64 ~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~----yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------  128 (385)
T KOG1034|consen   64 NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWS----YDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------  128 (385)
T ss_pred             cEEEEEEECCccceeeeeeccCCCCCcceEEEEEE----ecCCCCCeeEEeecceeEEEEEecchhhhc-----------
Confidence            467777766644333444432  477788889998    332234568999999999999999877544           


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                              ..+.+|...|+.+.+.|     .+.++      ++++|.|..|++|++++  ..++
T Consensus       129 ------------------------~~~~ghG~sINeik~~p-----~~~ql------vls~SkD~svRlwnI~~--~~Cv  171 (385)
T KOG1034|consen  129 ------------------------KNYRGHGGSINEIKFHP-----DRPQL------VLSASKDHSVRLWNIQT--DVCV  171 (385)
T ss_pred             ------------------------cceeccCccchhhhcCC-----CCCcE------EEEecCCceEEEEeccC--CeEE
Confidence                                    34578999999999998     55667      99999999999999999  7666


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC----------------c----c--cc-ccccc
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN----------------W----Q--PQ-KVPSG  220 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------------~----~--~~-~~~~~  220 (351)
                      ..  ++...+|...|.++.|++++.++++++.|.+|.+|++...+.+.                +    .  +. .+..-
T Consensus       172 ~V--fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di  249 (385)
T KOG1034|consen  172 AV--FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI  249 (385)
T ss_pred             EE--ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence            54  44567899999999999999999999999999999998432110                0    0  00 02233


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc----cCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL----MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      |...|-++.|-  |.++++-+-++.|..|..-..+...    .....-..+.++......|+-+.|.-..-+.+||.|..
T Consensus       250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            66666666665  5789999999999999883221110    00111123334444555677777665235789999999


Q ss_pred             CCeEEEEecCc
Q 048511          297 EKVARVFEAPL  307 (351)
Q Consensus       297 dg~v~vw~~~~  307 (351)
                      .|.|.+||++.
T Consensus       328 ~g~v~vwdL~~  338 (385)
T KOG1034|consen  328 SGKVYVWDLDN  338 (385)
T ss_pred             CCcEEEEECCC
Confidence            99999999873

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=2.2e-19  Score=140.34  Aligned_cols=232  Identities=14%  Similarity=0.164  Sum_probs=166.9

Q ss_pred             CCCCceEEEEEccC-CCceEEEEeee-----ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511            2 GGLDNKIHLYRGQR-TGKFVRACELK-----GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         2 g~~dg~i~vw~~~~-~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~   75 (351)
                      ++.+..+|+|.+.. ..+..+...+.     .+.+++++..|+    .   -+-+++.++|-|-+..|||++++..-   
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn----e---~dp~~igtSSiDTTCTiWdie~~~~~---  186 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN----E---VDPNLIGTSSIDTTCTIWDIETGVSG---  186 (364)
T ss_pred             hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc----c---CCcceeEeecccCeEEEEEEeecccc---
Confidence            34566899999874 13333333332     345689999998    2   56789999999999999999986210   


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                                                   .+...+-+|.++|..++|.      ..+     ..+||+.+.||.||+||+
T Consensus       187 -----------------------------~vkTQLIAHDKEV~DIaf~------~~s-----~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  187 -----------------------------TVKTQLIAHDKEVYDIAFL------KGS-----RDVFASVGADGSVRMFDL  226 (364)
T ss_pred             -----------------------------ceeeEEEecCcceeEEEec------cCc-----cceEEEecCCCcEEEEEe
Confidence                                         1224467799999999999      322     234999999999999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      +..+..   ++. .+.+....+...++|+++ -+++|+-..| ..|.+.|++...    .++..+++|.+.|++++|.|.
T Consensus       227 R~leHS---TII-YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~----tpva~L~~H~a~VNgIaWaPh  298 (364)
T KOG0290|consen  227 RSLEHS---TII-YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC----TPVARLRNHQASVNGIAWAPH  298 (364)
T ss_pred             cccccc---eEE-ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC----cceehhhcCcccccceEecCC
Confidence            983322   221 112233557889999885 4677876665 679999999875    789999999999999999995


Q ss_pred             -CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          234 -SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       234 -~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                       ...|++++.|..+.+||+......    ....++..+. .++.|+.+.|++. .+.+|+.+...
T Consensus       299 S~~hictaGDD~qaliWDl~q~~~~----~~~dPilay~-a~~EVNqi~Ws~~-~~Dwiai~~~k  357 (364)
T KOG0290|consen  299 SSSHICTAGDDCQALIWDLQQMPRE----NGEDPILAYT-AGGEVNQIQWSSS-QPDWIAICFGK  357 (364)
T ss_pred             CCceeeecCCcceEEEEeccccccc----CCCCchhhhh-ccceeeeeeeccc-CCCEEEEEecC
Confidence             467999999999999999765420    0111222222 4567999999973 47788777554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=3.1e-19  Score=139.43  Aligned_cols=245  Identities=16%  Similarity=0.225  Sum_probs=170.3

Q ss_pred             CceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            5 DNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+.|.|-.+.. .+++..... -.|.-+++.+.|.|+...   ..-++|||++  ..+|+|.+.............    
T Consensus        72 ~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g---~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L----  141 (364)
T KOG0290|consen   72 NNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKG---VYPDLLATSS--DFLRLWRIGDEESRVELQSVL----  141 (364)
T ss_pred             CCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccc---cCcchhhccc--CeEEEEeccCcCCceehhhhh----
Confidence            34555554433 143333333 258889999999932210   1225787776  369999998543221111000    


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                            .......+..+++++.|+.     -+.++      +.++|-|-+..|||++.+....+
T Consensus       142 ----------------------~~~kns~~~aPlTSFDWne-----~dp~~------igtSSiDTTCTiWdie~~~~~~v  188 (364)
T KOG0290|consen  142 ----------------------NNNKNSEFCAPLTSFDWNE-----VDPNL------IGTSSIDTTCTIWDIETGVSGTV  188 (364)
T ss_pred             ----------------------ccCcccccCCccccccccc-----CCcce------eEeecccCeEEEEEEeeccccce
Confidence                                  0011234667899999995     55666      99999999999999998311113


Q ss_pred             EEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEe
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVS  241 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~  241 (351)
                      ++..    -.|...|+.++|...+ ..+++.+.||.+|+||++..+..  ..++.-.....+...++|++. -+++|+-.
T Consensus       189 kTQL----IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~  262 (364)
T KOG0290|consen  189 KTQL----IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFA  262 (364)
T ss_pred             eeEE----EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhh
Confidence            3322    2789999999999865 48899999999999999886431  222332233457888999984 46777766


Q ss_pred             CC-CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          242 HD-QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       242 ~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      .| ..|.|.|++...         .++.+++.|...|+.++|.| .....|.++++|..+.+||+...
T Consensus       263 ~dS~~V~iLDiR~P~---------tpva~L~~H~a~VNgIaWaP-hS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  263 MDSNKVVILDIRVPC---------TPVARLRNHQASVNGIAWAP-HSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cCCceEEEEEecCCC---------cceehhhcCcccccceEecC-CCCceeeecCCcceEEEEecccc
Confidence            65 569999999887         37889999999999999999 56889999999999999998743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=2.7e-18  Score=145.98  Aligned_cols=237  Identities=13%  Similarity=0.122  Sum_probs=158.1

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEE-eeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVS-SSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ++.++.|++||..+ ++.  ...+..+.. +..+.|+        ++++.+++ ++.|+.|++||+.+...+.....  .
T Consensus        49 ~~~~~~v~~~d~~~-~~~--~~~~~~~~~-~~~~~~~--------~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~  114 (300)
T TIGR03866        49 ASDSDTIQVIDLAT-GEV--IGTLPSGPD-PELFALH--------PNGKILYIANEDDNLVTVIDIETRKVLAEIPV--G  114 (300)
T ss_pred             ECCCCeEEEEECCC-CcE--EEeccCCCC-ccEEEEC--------CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--C
Confidence            45789999999988 643  344554443 5678899        77776654 56689999999987655443332  2


Q ss_pred             cceeeeEeeecCCeEEecCCceeE-EEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCeE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQV-SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~i  150 (351)
                      .....+.++|++..++++..+... ..+..        .. ....+.++.|+      ++++.      |+ ++..++.|
T Consensus       115 ~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s------~dg~~------l~~~~~~~~~v  181 (300)
T TIGR03866       115 VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT------ADGKE------LWVSSEIGGTV  181 (300)
T ss_pred             CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC------CCCCE------EEEEcCCCCEE
Confidence            245678999999998887654322 11111        11 12345678898      67776      64 55569999


Q ss_pred             EEEeccCCCcceEEEEEeccccc--cccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSH--SALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      ++||+++  ++....+.......  .......++|+|++++++++ +.++.+.+||+++.+     ....+ .+...+.+
T Consensus       182 ~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-----~~~~~-~~~~~~~~  253 (300)
T TIGR03866       182 SVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-----VLDYL-LVGQRVWQ  253 (300)
T ss_pred             EEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-----EEEEE-EeCCCcce
Confidence            9999998  65555443211111  11234568899999986554 456789999998753     23332 23457889


Q ss_pred             EEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          228 ISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       228 v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ++|+|++++|+++ ..++.|++||+++++          .+..++. +...+.++++|
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~----------~~~~~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALK----------VIKSIKV-GRLPWGVVVRP  300 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCc----------EEEEEEc-ccccceeEeCC
Confidence            9999999999876 468999999998877          4444433 34457777754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.5e-19  Score=142.98  Aligned_cols=177  Identities=15%  Similarity=0.196  Sum_probs=134.1

Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc---------------------------
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG---------------------------  160 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------  160 (351)
                      ..+++|.+.|++++|+      .||+.      |++++.|+.|++|+++..+.                           
T Consensus        80 ~~LKgH~~~vt~~~Fs------SdGK~------lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFS------SDGKK------LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSV  147 (420)
T ss_pred             hhhhccCCceeeeEEc------CCCce------eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceE
Confidence            4589999999999999      89999      99999999999999975111                           


Q ss_pred             -------ceEEEEEec------------------cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          161 -------IWMNVVTVG------------------ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       161 -------~~~~~~~~~------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                             ..+..+.+.                  ....|...+..+-...++.+|++++.|..|.+|+++.      +.+
T Consensus       148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG------q~L  221 (420)
T KOG2096|consen  148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG------QLL  221 (420)
T ss_pred             EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC------cee
Confidence                   001111100                  0112334455555556778999999999999999995      456


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      ..+......-+..+.||+|+++++++---.|+||.+--.+.-.  .+....+..+.+|...|..++|++  +...+++.|
T Consensus       222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~--fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvS  297 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT--FQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVS  297 (420)
T ss_pred             eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc--hhhhhhhheeccchhheeeeeeCC--CcceeEEEe
Confidence            6666555556678899999999999998889999975433100  223345567889999999999999  899999999


Q ss_pred             CCCeEEEEecC
Q 048511          296 DEKVARVFEAP  306 (351)
Q Consensus       296 ~dg~v~vw~~~  306 (351)
                      .||.+||||.+
T Consensus       298 kDG~wriwdtd  308 (420)
T KOG2096|consen  298 KDGKWRIWDTD  308 (420)
T ss_pred             cCCcEEEeecc
Confidence            99999999975

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=2.4e-17  Score=141.94  Aligned_cols=269  Identities=12%  Similarity=0.095  Sum_probs=172.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCccccee-eccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANT-QSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~-~~~~   79 (351)
                      ...|+.|++|++.+.+++..+..+. +.+....++++        +++++|+.++ .++.|.+|++.....+... ....
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~s--------pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~   78 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVIS--------PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL   78 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEEC--------CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC
Confidence            3568999999997546666666665 34667889999        8888887664 5788999999732222111 1122


Q ss_pred             ccceeeeEeeecCCeEEecCC-ceeEEEEEecc-----------ccccceEEEEecCCCCCCCCCcccCCCcee-EEeec
Q 048511           80 RKEVISLASYIEGPVLVAGSS-SYQVSVESLLI-----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASM  146 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~-----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~  146 (351)
                      ......++++++++.++++.. ++.+.++..-.           .+.....+++++      +++++      + ++...
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~------p~g~~------l~v~~~~  146 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID------PDNRT------LWVPCLK  146 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC------CCCCE------EEEeeCC
Confidence            335678999999998887653 44444433210           112235667788      67776      6 45556


Q ss_pred             CCeEEEEeccCCCcceEE----EEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCccccccccc-
Q 048511          147 DKTMMIWQPEKTTGIWMN----VVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSG-  220 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~-  220 (351)
                      ++.|.+||+... +....    ....    ........++|+|++++++++.. ++.|.+|++..... ....+..+.. 
T Consensus       147 ~~~v~v~d~~~~-g~l~~~~~~~~~~----~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~~~~~~~~~  220 (330)
T PRK11028        147 EDRIRLFTLSDD-GHLVAQEPAEVTT----VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIECVQTLDMM  220 (330)
T ss_pred             CCEEEEEEECCC-CcccccCCCceec----CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEEEEEEEecC
Confidence            799999999762 22210    1111    11234678999999999988876 89999999974210 0112222211 


Q ss_pred             -----ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          221 -----HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       221 -----~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                           +......+.++|++++|+++.. ++.|.+|++.....      .++.+..... +.....++++|  ++++|+++
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~------~~~~~~~~~~-~~~p~~~~~~~--dg~~l~va  291 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS------VLSFEGHQPT-ETQPRGFNIDH--SGKYLIAA  291 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC------eEEEeEEEec-cccCCceEECC--CCCEEEEE
Confidence                 1223446889999999988754 78999999865431      1122222211 23456789999  88888766


Q ss_pred             c-CCCeEEEEecC
Q 048511          295 A-DEKVARVFEAP  306 (351)
Q Consensus       295 ~-~dg~v~vw~~~  306 (351)
                      . .++.|.+|+++
T Consensus       292 ~~~~~~v~v~~~~  304 (330)
T PRK11028        292 GQKSHHISVYEID  304 (330)
T ss_pred             EccCCcEEEEEEc
Confidence            6 48999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=6.5e-18  Score=152.84  Aligned_cols=269  Identities=12%  Similarity=0.115  Sum_probs=182.1

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeec---CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-cccee---
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGH---TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANT---   75 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~---   75 (351)
                      ...-.|+|||.+. +  ..+..|..+   ...|+.+.+.    ++  .+..++++|+.||.||||+-.... ...++   
T Consensus      1083 d~r~~i~vwd~e~-~--~~l~~F~n~~~~~t~Vs~l~li----Ne--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTa 1153 (1387)
T KOG1517|consen 1083 DDRERIRVWDWEK-G--RLLNGFDNGAFPDTRVSDLELI----NE--QDDALLLTASSDGVIRIWKDYADKWKKPELVTA 1153 (1387)
T ss_pred             CCcceEEEEeccc-C--ceeccccCCCCCCCccceeeee----cc--cchhheeeeccCceEEEecccccccCCceeEEe
Confidence            3345899999998 6  334445433   3579999998    44  677899999999999999864332 11111   


Q ss_pred             -------ecccccceeeeEeeecCCeEEecCCceeEEEEEec---------cccccceEEEEecCCCCCCCCCcccCCCc
Q 048511           76 -------QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPS  139 (351)
Q Consensus        76 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~  139 (351)
                             .....+...-+.|......|.+++....+++|..-         .+-...|+++.-+-     ..|++     
T Consensus      1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~-----~~gn~----- 1223 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL-----VHGNI----- 1223 (1387)
T ss_pred             eccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc-----cCCce-----
Confidence                   11112223455677777777777767777777542         12233455554331     45677     


Q ss_pred             eeEEeecCCeEEEEeccCCCcc-eEEEEEeccccccccc--eEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          140 SILSASMDKTMMIWQPEKTTGI-WMNVVTVGELSHSALG--FYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                       ++.|..||.|++||.+..... .+...+     .|...  |..+.+.++|- .|++|+.+|.|++||++....   ...
T Consensus      1224 -i~AGfaDGsvRvyD~R~a~~ds~v~~~R-----~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~---e~~ 1294 (1387)
T KOG1517|consen 1224 -IAAGFADGSVRVYDRRMAPPDSLVCVYR-----EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK---ETF 1294 (1387)
T ss_pred             -EEEeecCCceEEeecccCCccccceeec-----ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc---ccc
Confidence             999999999999999974332 222232     55555  99999988765 599999999999999998422   112


Q ss_pred             ccccccc--c-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEE
Q 048511          216 KVPSGHF--A-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       216 ~~~~~~~--~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l  291 (351)
                      .+...|.  + ..+++..+++..++|+|+. +.|+||++.....     ..++.-..+.+ ....+.|++|+|  -.-++
T Consensus      1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-----~~~k~n~~F~~q~~gs~scL~FHP--~~~ll 1366 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-----NIIKYNPGFMGQRIGSVSCLAFHP--HRLLL 1366 (1387)
T ss_pred             ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-----cccccCcccccCcCCCcceeeecc--hhHhh
Confidence            2223332  3 5899999999999999988 9999999976652     22222122211 123479999999  67788


Q ss_pred             EEecCCCeEEEEecCc
Q 048511          292 VSGADEKVARVFEAPL  307 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~~  307 (351)
                      |+|+.|..|.||..+.
T Consensus      1367 AaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             hhccCCceEEEeecCC
Confidence            9999999999998763

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=4.1e-18  Score=138.94  Aligned_cols=249  Identities=16%  Similarity=0.230  Sum_probs=163.4

Q ss_pred             CCCCCceEEEEEccC---CC---ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511            1 MGGLDNKIHLYRGQR---TG---KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~---~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      ||+.|..|+||.+..   .+   +...+..|..|..+|+++.|+        ++|++||||+.+|.|.+|....-... .
T Consensus        31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~--------p~gelLASg~D~g~v~lWk~~~~~~~-~  101 (434)
T KOG1009|consen   31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS--------PDGELLASGGDGGEVFLWKQGDVRIF-D  101 (434)
T ss_pred             cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc--------CCcCeeeecCCCceEEEEEecCcCCc-c
Confidence            688999999998764   11   456677889999999999999        89999999999999999987641110 0


Q ss_pred             eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      ..                .  -.........++..+.+|.+.|+.++|+      +++++      +++++.|+.+++||
T Consensus       102 ~d----------------~--e~~~~ke~w~v~k~lr~h~~diydL~Ws------~d~~~------l~s~s~dns~~l~D  151 (434)
T KOG1009|consen  102 AD----------------T--EADLNKEKWVVKKVLRGHRDDIYDLAWS------PDSNF------LVSGSVDNSVRLWD  151 (434)
T ss_pred             cc----------------c--hhhhCccceEEEEEecccccchhhhhcc------CCCce------eeeeeccceEEEEE
Confidence            00                0  0000112235567788999999999999      78889      99999999999999


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-------------------------
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-------------------------  209 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------------------------  209 (351)
                      +..  +.....+.     .|...+..++|.|-++++++-+.|...+.+.+.....                         
T Consensus       152 v~~--G~l~~~~~-----dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf  224 (434)
T KOG1009|consen  152 VHA--GQLLAILD-----DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF  224 (434)
T ss_pred             ecc--ceeEeecc-----ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence            998  66555443     5555666666666666655555554333333321100                         


Q ss_pred             ---------------------------------------------cCcccccccccccccEEEEEeec------------
Q 048511          210 ---------------------------------------------DNWQPQKVPSGHFAAVMDISWSR------------  232 (351)
Q Consensus       210 ---------------------------------------------~~~~~~~~~~~~~~~v~~v~~sp------------  232 (351)
                                                                   ....+...+.....+...+.|+|            
T Consensus       225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~  304 (434)
T KOG1009|consen  225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEK  304 (434)
T ss_pred             ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccc
Confidence                                                         00012222222233334444443            


Q ss_pred             ------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 ------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                            -+..++.++ ...|+|||.+...       .+..+  -..|-..|+.++|++  ||..++..|.||...+-.++
T Consensus       305 ~~~~lpyrlvfaiAt-~~svyvydtq~~~-------P~~~v--~nihy~~iTDiaws~--dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  305 FLFVLPYRLVFAIAT-KNSVYVYDTQTLE-------PLAVV--DNIHYSAITDIAWSD--DGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             cccccccceEEEEee-cceEEEecccccc-------ceEEE--eeeeeeeecceeecC--CCcEEEEeccCCceEEEEEc
Confidence                  111233343 4477888876654       11122  235777899999999  99999999999988887765


Q ss_pred             c
Q 048511          307 L  307 (351)
Q Consensus       307 ~  307 (351)
                      +
T Consensus       373 ~  373 (434)
T KOG1009|consen  373 P  373 (434)
T ss_pred             c
Confidence            3

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=2.2e-17  Score=146.11  Aligned_cols=268  Identities=11%  Similarity=0.087  Sum_probs=192.0

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc-----ceeecccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS-----ANTQSTYR   80 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-----~~~~~~~~   80 (351)
                      +.+.||+++...  .+...+. -...|+|+.|+    |   .+..+||.|..+|.|.+||+......     ......+.
T Consensus       222 ~~~~vW~~~~p~--~Pe~~~~-~~s~v~~~~f~----p---~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~  291 (555)
T KOG1587|consen  222 GVLLVWSLKNPN--TPELVLE-SPSEVTCLKFC----P---FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS  291 (555)
T ss_pred             ceEEEEecCCCC--CceEEEe-cCCceeEEEec----c---CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence            479999999843  3334444 36789999999    4   56779999999999999999877652     22334456


Q ss_pred             cceeeeEeeecCC--eEEecCCceeEEEEEec--------------c------ccccceEEEEecCCCCCCCCCcccCCC
Q 048511           81 KEVISLASYIEGP--VLVAGSSSYQVSVESLL--------------I------GHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        81 ~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~--------------~------~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      ..+..+.|..+-.  -+++++.|+.+..|..-              .      .....+++++|.|     .+...    
T Consensus       292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~-----~~p~~----  362 (555)
T KOG1587|consen  292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP-----TDPNH----  362 (555)
T ss_pred             cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc-----CCCce----
Confidence            6777777766443  47777778888666430              0      1123578899997     45556    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEE-eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVT-VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                        |+.|+.+|.|.-=+....+......++ ......|.++|+++.++|=+..++..+.|.+++||......    .++..
T Consensus       363 --FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~----~Pl~~  436 (555)
T KOG1587|consen  363 --FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA----SPLLS  436 (555)
T ss_pred             --EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC----Ccchh
Confidence              999999999877333321111101111 11234778899999999977666555559999999887322    67888


Q ss_pred             cccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          218 PSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      +..+...|++++|||-.. .|+++..||.|.+||+.....        .++.+...+....+.+.|++  .+..|++|..
T Consensus       437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--------~Pv~s~~~~~~~l~~~~~s~--~g~~lavGd~  506 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--------EPVLSQKVCSPALTRVRWSP--NGKLLAVGDA  506 (555)
T ss_pred             hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--------CCcccccccccccceeecCC--CCcEEEEecC
Confidence            888888899999999764 567888899999999977653        23444444455678888888  8999999999


Q ss_pred             CCeEEEEecCch
Q 048511          297 EKVARVFEAPLS  308 (351)
Q Consensus       297 dg~v~vw~~~~~  308 (351)
                      .|.+++|++...
T Consensus       507 ~G~~~~~~l~~~  518 (555)
T KOG1587|consen  507 NGTTHILKLSES  518 (555)
T ss_pred             CCcEEEEEcCch
Confidence            999999998633

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.8e-17  Score=126.59  Aligned_cols=262  Identities=15%  Similarity=0.142  Sum_probs=174.5

Q ss_pred             CCCCCceEEEEEccC--------CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc
Q 048511            1 MGGLDNKIHLYRGQR--------TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~--------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~   72 (351)
                      +|..+|+|.++.+..        .++ ..+...++|+++|+.++|.          .++|++|+ ||.|+-|..+.....
T Consensus        27 agn~~G~iav~sl~sl~s~sa~~~gk-~~iv~eqahdgpiy~~~f~----------d~~Lls~g-dG~V~gw~W~E~~es   94 (325)
T KOG0649|consen   27 AGNLFGDIAVLSLKSLDSGSAEPPGK-LKIVPEQAHDGPIYYLAFH----------DDFLLSGG-DGLVYGWEWNEEEES   94 (325)
T ss_pred             EecCCCeEEEEEehhhhccccCCCCC-cceeeccccCCCeeeeeee----------hhheeecc-CceEEEeeehhhhhh
Confidence            377899999998754        233 3455679999999999999          56888887 599999998765432


Q ss_pred             ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-cccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           73 ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-LIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      .....                            +|.. ..-|     --.|+++-..|      ..+-      ++.++.
T Consensus        95 ~~~K~----------------------------lwe~~~P~~~~~~evPeINam~ldP------~enS------i~~AgG  134 (325)
T KOG0649|consen   95 LATKR----------------------------LWEVKIPMQVDAVEVPEINAMWLDP------SENS------ILFAGG  134 (325)
T ss_pred             ccchh----------------------------hhhhcCccccCcccCCccceeEecc------CCCc------EEEecC
Confidence            11110                            0000 0111     23578888885      3333      666679


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----Ccccccccccc-
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----NWQPQKVPSGH-  221 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~~~-  221 (351)
                      |+.++-||+++  |.....++     +|+..|.++.--.....+++|+.||++++||+++.+.-    .++....+..| 
T Consensus       135 D~~~y~~dlE~--G~i~r~~r-----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  135 DGVIYQVDLED--GRIQREYR-----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             CeEEEEEEecC--CEEEEEEc-----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            99999999999  88888887     99999999998666667999999999999999987431    11111112222 


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      ..+|.+++-  +..+|++|+ ...+.+|.++..+..        .+..+.+   .+..+.|.    ...+++++....|.
T Consensus       208 g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t--------~vfpipa---~v~~v~F~----~d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  208 GKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST--------CVFPIPA---RVHLVDFV----DDCVLIGGEGNHVQ  269 (325)
T ss_pred             CceeEEEec--cCceEEecC-CCceeEEeccCCCce--------EEEeccc---ceeEeeee----cceEEEecccccee
Confidence            234655554  456787664 568999999887621        2222333   36778885    46788888999999


Q ss_pred             EEecCchhhhcee--eccccccchhhhhHHhHHhhcceeeeccCCCC
Q 048511          302 VFEAPLSFLKTLN--HATFQESSFHEDLQADVQILGANMSALGLSQK  346 (351)
Q Consensus       302 vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (351)
                      -|.+.|.......  .+......-.     ..|.  .-+..-|.|||
T Consensus       270 ~~~l~Gvl~a~ip~~s~~c~s~s~~-----~~p~--k~~s~ag~s~~  309 (325)
T KOG0649|consen  270 SYTLNGVLQANIPVESTACYSASWQ-----TSPI--KFISIAGFSNK  309 (325)
T ss_pred             eeeeccEEEEeccCCccceeeeccc-----CCce--EEEEeccccee
Confidence            9998865433222  2222222221     2355  67777788886

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=5.2e-18  Score=145.70  Aligned_cols=226  Identities=15%  Similarity=0.221  Sum_probs=160.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cc----e
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SA----N   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~----~   74 (351)
                      +++.|.+|++||+.. +++.-...+.||.+.|.+++|.    +   .+...|+||+.||.|.|||++-...  ..    .
T Consensus       117 sasGDsT~r~Wdvk~-s~l~G~~~~~GH~~SvkS~cf~----~---~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~  188 (720)
T KOG0321|consen  117 SASGDSTIRPWDVKT-SRLVGGRLNLGHTGSVKSECFM----P---TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR  188 (720)
T ss_pred             EccCCceeeeeeecc-ceeecceeecccccccchhhhc----c---CCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence            367899999999999 7666666688999999999999    3   4567899999999999999864331  00    0


Q ss_pred             e----ec----------------ccccceee---eEeeecCCeEEecCC-ceeEEEEEecc----------------cc-
Q 048511           75 T----QS----------------TYRKEVIS---LASYIEGPVLVAGSS-SYQVSVESLLI----------------GH-  113 (351)
Q Consensus        75 ~----~~----------------~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~~~~~----------------~h-  113 (351)
                      +    ..                .....+.+   ..+..|...|++++. |+.+++|..-+                -| 
T Consensus       189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s  268 (720)
T KOG0321|consen  189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS  268 (720)
T ss_pred             hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence            0    00                00222233   566778888887665 88888886421                12 


Q ss_pred             --ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCE
Q 048511          114 --EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRS  189 (351)
Q Consensus       114 --~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~  189 (351)
                        .-.+.++...      ..|.+      |.+...|+.|.+|++.......+..+.     ++.  ..-..-..+|++.+
T Consensus       269 krs~G~~nL~lD------ssGt~------L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  269 KRSVGQVNLILD------SSGTY------LFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             cceeeeEEEEec------CCCCe------EEEEecCCcEEEEeccccCcCchhhcc-----CcccceeeeeeecCCCCce
Confidence              2235666666      55666      666666999999999874333322222     111  11123356899999


Q ss_pred             EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcc
Q 048511          190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +++|+.|...++|.+.+.+    .+...+.+|.-.|++++|.|.. .-++++++|..++||++.++-
T Consensus       332 l~SgSsd~~ayiw~vs~~e----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPE----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             EeccCCCcceeeeeecCcc----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            9999999999999998875    6677888999999999999854 237778999999999996654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=7.9e-19  Score=142.61  Aligned_cols=167  Identities=21%  Similarity=0.340  Sum_probs=132.1

Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE--EeccccccccceEEEEEcCC
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV--TVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~  186 (351)
                      .+.||+.+|..++|+|     .+.+.      +|+||.|.+|.||++..  +.....+  ....+.+|...|-.++|+|.
T Consensus        76 ~v~GHt~~vLDi~w~P-----fnD~v------IASgSeD~~v~vW~IPe--~~l~~~ltepvv~L~gH~rrVg~V~wHPt  142 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCP-----FNDCV------IASGSEDTKVMVWQIPE--NGLTRDLTEPVVELYGHQRRVGLVQWHPT  142 (472)
T ss_pred             CccCccccccccccCc-----cCCce------eecCCCCceEEEEECCC--cccccCcccceEEEeecceeEEEEeeccc
Confidence            3578999999999999     66777      99999999999999986  2221111  12234589999999999996


Q ss_pred             C-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511          187 G-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       187 ~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      . +.|++++.|.+|.+|++.+++     .+.++. |...|++++|+.+|.+|++.+.|+.|||||.+.+.          
T Consensus       143 A~NVLlsag~Dn~v~iWnv~tge-----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~----------  206 (472)
T KOG0303|consen  143 APNVLLSAGSDNTVSIWNVGTGE-----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT----------  206 (472)
T ss_pred             chhhHhhccCCceEEEEeccCCc-----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc----------
Confidence            4 688999999999999999984     355565 99999999999999999999999999999999987          


Q ss_pred             Eecccccccc-ceeEEEEeeeCCCcEEEEec---CCCeEEEEecC
Q 048511          266 EVARPQVHGH-DINCVTIIQGKGNHRFVSGA---DEKVARVFEAP  306 (351)
Q Consensus       266 ~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~---~dg~v~vw~~~  306 (351)
                      .+..-.+|.+ .-..+.|..  ++.++.+|-   .+..+-+||..
T Consensus       207 ~v~e~~~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             EeeecccccCCCcceeEEec--cCceeeeccccccccceeccCcc
Confidence            3433345543 355666777  677555543   67889999964

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=1.1e-17  Score=130.75  Aligned_cols=221  Identities=19%  Similarity=0.302  Sum_probs=155.0

Q ss_pred             CCCcEEEEecCCCcc--cceeecccccceeeeEeeecCCeEEe-cCC----c---eeEEEEE-----------------e
Q 048511           57 QDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGPVLVA-GSS----S---YQVSVES-----------------L  109 (351)
Q Consensus        57 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~----~---~~~~~~~-----------------~  109 (351)
                      .|..|.+-++..+..  .........+.+..++.+|-.+.+++ .-.    .   ....+|.                 .
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            466777777665432  33344445667777777775554433 211    1   1111221                 1


Q ss_pred             cc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC--C
Q 048511          110 LI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--D  186 (351)
Q Consensus       110 ~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~  186 (351)
                      +. .+-+.|.|+.|.      |++..      +++-. |..|.+|++...... +..+.......+....++-+|+|  +
T Consensus       118 Ldteavg~i~cvew~------Pns~k------lasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHd  183 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWE------PNSDK------LASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHD  183 (370)
T ss_pred             CCHHHhCceeeEEEc------CCCCe------eEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCc
Confidence            22 345689999999      56666      77665 888999999983221 33333222334566788999999  5


Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      ++.+++ ..|+++..||+++..    +....-.+|...|..+.|+|+.+ +|++|+.||.|+|||.+..+         .
T Consensus       184 gnqv~t-t~d~tl~~~D~RT~~----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------~  249 (370)
T KOG1007|consen  184 GNQVAT-TSDSTLQFWDLRTMK----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------F  249 (370)
T ss_pred             cceEEE-eCCCcEEEEEccchh----hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---------c
Confidence            665554 568899999999864    33444457888999999999865 47899999999999999887         3


Q ss_pred             EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++..+.+|.+.|+++.|+|. -.++|++||.|..|.+|...
T Consensus       250 pv~el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             cccccCCCceEEEEEEecCc-cceEEEecCCCceeEEEecc
Confidence            77888899999999999993 47899999999999999854

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.4e-17  Score=134.16  Aligned_cols=250  Identities=18%  Similarity=0.237  Sum_probs=179.4

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC------CcccceeecccccceeeeEeeecCCe
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL------RGSSANTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      +...+.+|.+.|+++.|+        .++++|++|+.|..+++|++..      .+.+.....++...+.+++|...+..
T Consensus        48 ~qKD~~~H~GCiNAlqFS--------~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~  119 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFS--------HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF  119 (609)
T ss_pred             hhhhhhhhccccceeeec--------cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee
Confidence            344577899999999999        8899999999999999999853      34455555666789999999999999


Q ss_pred             EEecCCceeEEEEEe-------ccccc---cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511           95 LVAGSSSYQVSVESL-------LIGHE---DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        95 l~~~~~~~~~~~~~~-------~~~h~---~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  164 (351)
                      +.+|...+.+.....       ...|.   +.|+.+..+|      ..+.      |++.+.++.|.+||.+.... ...
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P------~DN~------~~~~t~~~~V~~~D~Rd~~~-~~~  186 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP------TDNT------LIVVTRAKLVSFIDNRDRQN-PIS  186 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeecccCcccceeecccCC------CCce------EEEEecCceEEEEeccCCCC-CCc
Confidence            999998887643221       22344   4899999994      5667      99999999999999997321 223


Q ss_pred             EEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcc--cccccccccccEEEEEeecCCCEEEEEe
Q 048511          165 VVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQ--PQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      .+.+.   ......+++.|+|.. .+|++.+..+-+.+||++......++  ....+......-.++.|+|+|..|++--
T Consensus       187 ~~~~A---N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  187 LVLPA---NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             eeeec---CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence            33322   334567899999965 57778888889999999876421111  1112222223346788999999998877


Q ss_pred             CCCcEEEEcCCCccccccCccceEEecccc----c--cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQ----V--HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ....-.+||+-...+         .+..+.    +  ....+.+++|..   ...+++|+++-.|++|.++
T Consensus       264 R~~~P~~~D~~S~R~---------~V~k~D~N~~GY~N~~T~KS~~F~~---D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  264 RGKCPLYFDFISQRC---------FVLKSDHNPNGYCNIKTIKSMTFID---DYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             ccCCCEEeeeecccc---------eeEeccCCCCcceeeeeeeeeeeec---ceeeeccCcccceEEEecC
Confidence            666677888876542         111111    1  112477888875   5569999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=9.8e-18  Score=136.75  Aligned_cols=173  Identities=24%  Similarity=0.366  Sum_probs=141.8

Q ss_pred             CCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      ..+|..+.|.        ++.. .|+||+.|..|++|.++....-.                          .+..+...
T Consensus        13 ~~pv~s~dfq--------~n~~~~laT~G~D~~iriW~v~r~~~~~--------------------------~~~~V~y~   58 (434)
T KOG1009|consen   13 HEPVYSVDFQ--------KNSLNKLATAGGDKDIRIWKVNRSEPGG--------------------------GDMKVEYL   58 (434)
T ss_pred             CCceEEEEec--------cCcccceecccCccceeeeeeeecCCCC--------------------------CceeEEEe
Confidence            3589999998        4444 99999999999999998654321                          11345667


Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC-------C-----CcceEEEEEeccccccc
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK-------T-----TGIWMNVVTVGELSHSA  175 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~-----~~~~~~~~~~~~~~~~~  175 (351)
                      ..+..|...|+++.|+      ++|++      ||+|+.+|.|.+|-...       .     ...++....   ..+|.
T Consensus        59 s~Ls~H~~aVN~vRf~------p~gel------LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~---lr~h~  123 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFS------PDGEL------LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV---LRGHR  123 (434)
T ss_pred             ecccCCcceeEEEEEc------CCcCe------eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEE---ecccc
Confidence            7899999999999999      79999      99999999999998761       0     112332222   34688


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..|+.++|+|++.++++++.|..+++||+..+     +....+..|...+..++|.|-.+++++-+.|...+.+++...+
T Consensus       124 ~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-----~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  124 DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-----QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             cchhhhhccCCCceeeeeeccceEEEEEeccc-----eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence            89999999999999999999999999999998     6788999999999999999999999999999877777765443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.7e-18  Score=143.73  Aligned_cols=247  Identities=17%  Similarity=0.129  Sum_probs=162.7

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .....+.||++.|+|++|+        .+|.+|++||.|-.+.|||....+.+..+.                       
T Consensus        41 ~lE~eL~GH~GCVN~LeWn--------~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-----------------------   89 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWN--------ADGELLASGSDDTRLIVWDPFEYKLLHSIS-----------------------   89 (758)
T ss_pred             chhhhhccccceecceeec--------CCCCEEeecCCcceEEeecchhcceeeeee-----------------------
Confidence            3445789999999999999        899999999999999999998665544333                       


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE---EEEEecccccccc
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM---NVVTVGELSHSAL  176 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~  176 (351)
                                 .||...|.+++|.|..    +.++      +++|+.|..|+++|+...++.-.   ...+......|..
T Consensus        90 -----------TgHtaNIFsvKFvP~t----nnri------v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~  148 (758)
T KOG1310|consen   90 -----------TGHTANIFSVKFVPYT----NNRI------VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD  148 (758)
T ss_pred             -----------cccccceeEEeeeccC----CCeE------EEeccCcceEEEEecccccccccccCccchhhhhhhhhh
Confidence                       6799999999999853    4556      99999999999999985211100   0111222346778


Q ss_pred             ceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccC--cccc---cccccccccEEEEEeecCC-CEEEEEeCCCcEEEE
Q 048511          177 GFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDN--WQPQ---KVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVF  249 (351)
Q Consensus       177 ~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~--~~~~---~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vw  249 (351)
                      .|..++-.|++ ..+.+++.||+|+-||++......  ..+.   ..+...--...++..+|.. .+|++|+.|-..++|
T Consensus       149 rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLY  228 (758)
T KOG1310|consen  149 RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLY  228 (758)
T ss_pred             hhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhh
Confidence            88899999988 788999999999999998743110  0011   1111112345678889854 578999999999999


Q ss_pred             cCCCccccccCccceE----------Eeccc-cccc--------c---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511          250 APWKNVASLMGENSWH----------EVARP-QVHG--------H---DINCVTIIQGKGNHRFVSGADEKVARVFEAP-  306 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~----------~~~~~-~~~~--------~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-  306 (351)
                      |.+.......  ..+.          .+..+ .+|-        .   .++-+.|+|  +|.-|+..-..-.|++||+. 
T Consensus       229 D~Rr~lks~~--s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp--NGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  229 DRRRVLKSFR--SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP--NGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             hhhhhccCCC--CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC--CCcEEEEeeCCeEEEEEeecC
Confidence            9543221110  0000          01000 0111        1   156677888  65555444445589999986 


Q ss_pred             -chhhhceeeccccccc
Q 048511          307 -LSFLKTLNHATFQESS  322 (351)
Q Consensus       307 -~~~~~~~~~~~~~~~~  322 (351)
                       ......+.+...+..+
T Consensus       305 ~~~~~~y~~~~~~~~~~  321 (758)
T KOG1310|consen  305 DKSPTPYFLPIEDSNKK  321 (758)
T ss_pred             CCCceeecCcccccccC
Confidence             3344444444443333

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=7.3e-18  Score=138.26  Aligned_cols=203  Identities=15%  Similarity=0.154  Sum_probs=151.2

Q ss_pred             eEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccc
Q 048511           33 RSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG  112 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  112 (351)
                      .+++|+        .+|..|++++.||++|||++.......                                   ....
T Consensus       148 k~vaf~--------~~gs~latgg~dg~lRv~~~Ps~~t~l-----------------------------------~e~~  184 (398)
T KOG0771|consen  148 KVVAFN--------GDGSKLATGGTDGTLRVWEWPSMLTIL-----------------------------------EEIA  184 (398)
T ss_pred             eEEEEc--------CCCCEeeeccccceEEEEecCcchhhh-----------------------------------hhHh
Confidence            678898        889999999999999999976544332                                   2345


Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC---CE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---RS  189 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~  189 (351)
                      |...|.++.|+      +|+++      |++-+.| ..+||+.++  +..+.....   ......+..+.|+.++   .+
T Consensus       185 ~~~eV~DL~FS------~dgk~------lasig~d-~~~VW~~~~--g~~~a~~t~---~~k~~~~~~cRF~~d~~~~~l  246 (398)
T KOG0771|consen  185 HHAEVKDLDFS------PDGKF------LASIGAD-SARVWSVNT--GAALARKTP---FSKDEMFSSCRFSVDNAQETL  246 (398)
T ss_pred             hcCccccceeC------CCCcE------EEEecCC-ceEEEEecc--CchhhhcCC---cccchhhhhceecccCCCceE
Confidence            88899999999      89999      9999999 899999998  644433321   1233446667887766   22


Q ss_pred             --EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511          190 --ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV  267 (351)
Q Consensus       190 --l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  267 (351)
                        ++.....+.|+.||+.......+-..++...-...|++++.+++|++++.|+.||.|.|++....+.         ..
T Consensus       247 ~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---------~~  317 (398)
T KOG0771|consen  247 RLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---------LQ  317 (398)
T ss_pred             EEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---------eE
Confidence              2333344778888875432211112222222344799999999999999999999999999977662         33


Q ss_pred             ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ...+.|..-|+.+.|+|  +.+++++.+.|..++|..+..
T Consensus       318 ~vk~aH~~~VT~ltF~P--dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  318 YVKEAHLGFVTGLTFSP--DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eehhhheeeeeeEEEcC--CcCcccccccCCceeEEEEee
Confidence            44568999999999999  999999999999999998764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.6e-16  Score=140.15  Aligned_cols=279  Identities=13%  Similarity=0.147  Sum_probs=196.4

Q ss_pred             CCCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +|..||.|.+|.--. .+.-.....+.-|.++|+++.|+        .+|.+|+|||..+.+.+|.+.+++  +......
T Consensus       222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS--------~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRL  291 (792)
T KOG1963|consen  222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS--------SDGAYLLSGGREGVLVLWQLETGK--KQFLPRL  291 (792)
T ss_pred             EeccCCcEEEEeccccccccccceEEEecccccceeEEe--------cCCceEeecccceEEEEEeecCCC--ccccccc
Confidence            467899999996433 12224456788999999999999        899999999999999999999887  3333344


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEe--------cc-----------ccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESL--------LI-----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~-----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                      ...+..+.++|++...++...|..+.++..        +.           +..+-.+.+.++|      ..+.      
T Consensus       292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp------r~~~------  359 (792)
T KOG1963|consen  292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP------RTNS------  359 (792)
T ss_pred             CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC------CCCc------
Confidence            668999999999999888877877765542        11           1233456677774      3344      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEecccccc------ccceEEEEEcCCCCEEEEEee--------C--CeEEEEEc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS------ALGFYGGHWSPDGRSILAHGY--------G--GAFHLWRN  204 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~--------d--g~i~~~d~  204 (351)
                      ++-.+..+.|.+||+.+  ...+..+.+.....+      ...++.++.+..|.++++...        |  -.+++|-.
T Consensus       360 ~vln~~~g~vQ~ydl~t--d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYT--DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             eeecCCCceEEEEeccc--cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            78888999999999998  444444444332222      234677788888999988642        3  35788876


Q ss_pred             ccCcccCccccc-ccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511          205 VGVDIDNWQPQK-VPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       205 ~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                      ..... .|.+.. ....|...+...++.+.  ...+++++.||.++||-+...+........|.+...-..|..+++.++
T Consensus       438 n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~  516 (792)
T KOG1963|consen  438 NPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC  516 (792)
T ss_pred             cCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence            54321 122222 23357766666666542  237899999999999998655443333457777655556888999999


Q ss_pred             EeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          282 IIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |+.  || -+++.+.|++|.+||...
T Consensus       517 fs~--dG-slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  517 FSQ--DG-SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             hcC--CC-cEEEEecCCEEEEecCCC
Confidence            998  77 556666888999999774

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.6e-17  Score=130.71  Aligned_cols=202  Identities=16%  Similarity=0.148  Sum_probs=147.4

Q ss_pred             cEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCC
Q 048511           50 ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAP  129 (351)
Q Consensus        50 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  129 (351)
                      ..+|++-..|.|++||..+++.+.                                   .++++...++.+.|....   
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~-----------------------------------~fk~~~~~~N~vrf~~~d---   82 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------------------------EFKGPPATTNGVRFISCD---   82 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh-----------------------------------eecCCCCcccceEEecCC---
Confidence            568888889999999999876553                                   346677778888887310   


Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc-ccceEEEEEcCCCCEEEEEe----eCCeEEEEEc
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS-ALGFYGGHWSPDGRSILAHG----YGGAFHLWRN  204 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~----~dg~i~~~d~  204 (351)
                       ....      +.+|+.||+|++||+|...  ....+...   .+ ..+..+++....++.+++|.    .+-.|.+||.
T Consensus        83 -s~h~------v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~---~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDv  150 (376)
T KOG1188|consen   83 -SPHG------VISCSSDGTVRLWDIRSQA--ESARISWT---QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDV  150 (376)
T ss_pred             -CCCe------eEEeccCCeEEEEEeecch--hhhheecc---CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEe
Confidence             2233      9999999999999999843  32233221   23 24677788777788888876    3568999999


Q ss_pred             ccCcccCcc-cccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511          205 VGVDIDNWQ-PQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI  282 (351)
Q Consensus       205 ~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (351)
                      +..+    + +..-...|...|++++|+|. .++|++||.||.|.|||+.......       .+....-|...|.++.|
T Consensus       151 R~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-------aL~~viN~~sSI~~igw  219 (376)
T KOG1188|consen  151 RSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-------ALLHVINHGSSIHLIGW  219 (376)
T ss_pred             cccc----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-------hHHHhhcccceeeeeee
Confidence            9875    4 33445679999999999994 5789999999999999997664221       22222356777999999


Q ss_pred             eeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          283 IQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       283 ~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      .. +.-..|.+-+......+|+++ +.....+
T Consensus       220 ~~-~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  220 LS-KKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             ec-CCcceEEEEEccCceeEEEccCCChhhcc
Confidence            87 223468899999999999987 5544333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=8.4e-17  Score=135.86  Aligned_cols=239  Identities=15%  Similarity=0.159  Sum_probs=164.3

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEe-----eecCCeEEecCCceeEEEEEecc-------
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLAS-----YIEGPVLVAGSSSYQVSVESLLI-------  111 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~-------  111 (351)
                      ..|++|+-.-. ..+.+|+.+....+......   ......+-.|     .+.+.-+.++-..+.+..+....       
T Consensus       133 ~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklf  211 (636)
T KOG2394|consen  133 GKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLF  211 (636)
T ss_pred             CCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhh
Confidence            45666654432 35888888743322111110   1112222222     34566677777776665544311       


Q ss_pred             -----ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC------------CcceEEEE--------
Q 048511          112 -----GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT------------TGIWMNVV--------  166 (351)
Q Consensus       112 -----~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~--------  166 (351)
                           -....|+|+.|.|     -+..+      |+.+..+|.+.+||....            ++......        
T Consensus       212 ne~r~i~ktsvT~ikWvp-----g~~~~------Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  212 NEERLINKSSVTCIKWVP-----GSDSL------FLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             hhcccccccceEEEEEEe-----CCCce------EEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence                 1236799999997     55566      889999999999987531            01100000        


Q ss_pred             -EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511          167 -TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT  245 (351)
Q Consensus       167 -~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~  245 (351)
                       .+.........|..++|+|||++||+.+.||.++|||..+.     .++-.++.--+...+++|||||+||++|++|--
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-----eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL  355 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-----ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL  355 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-----HHHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence             01111223457889999999999999999999999999986     445566666788999999999999999999999


Q ss_pred             EEEEcCCCccccccCccceEEeccccccccceeEEEEeee---------------------------------C------
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG---------------------------------K------  286 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------~------  286 (351)
                      |.||.+..++          .+.+-++|...|+.++|.|.                                 .      
T Consensus       356 VtVwSf~erR----------VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s  425 (636)
T KOG2394|consen  356 VTVWSFEERR----------VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLS  425 (636)
T ss_pred             EEEEEeccce----------EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccc
Confidence            9999998887          78888899999999999830                                 0      


Q ss_pred             -------CCcEEEEecCCCeEEEEecCchhhhc
Q 048511          287 -------GNHRFVSGADEKVARVFEAPLSFLKT  312 (351)
Q Consensus       287 -------~~~~l~s~~~dg~v~vw~~~~~~~~~  312 (351)
                             ....|.+.+.|-.+.+||+....+..
T Consensus       426 ~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  426 SFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ccccccceEEEeecccccceEEEEecchhhccc
Confidence                   12468889999999999987554443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1.1e-18  Score=154.19  Aligned_cols=226  Identities=18%  Similarity=0.246  Sum_probs=166.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|..++||..++ +  .++....||.+.|+.++.+        .+.-+++++|.|..|++|.+..+..+        
T Consensus       207 tgsdd~lvKiwS~et-~--~~lAs~rGhs~ditdlavs--------~~n~~iaaaS~D~vIrvWrl~~~~pv--------  267 (1113)
T KOG0644|consen  207 TGSDDRLVKIWSMET-A--RCLASCRGHSGDITDLAVS--------SNNTMIAAASNDKVIRVWRLPDGAPV--------  267 (1113)
T ss_pred             ecCccceeeeeeccc-h--hhhccCCCCccccchhccc--------hhhhhhhhcccCceEEEEecCCCchH--------
Confidence            689999999999888 6  6788999999999999999        77889999999999999999987654        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC--
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT--  158 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--  158 (351)
                                                 ..+.+|++.|++++|+|                .++.+.||++++||.+-.  
T Consensus       268 ---------------------------svLrghtgavtaiafsP----------------~~sss~dgt~~~wd~r~~~~  304 (1113)
T KOG0644|consen  268 ---------------------------SVLRGHTGAVTAIAFSP----------------RASSSDDGTCRIWDARLEPR  304 (1113)
T ss_pred             ---------------------------HHHhccccceeeeccCc----------------cccCCCCCceEecccccccc
Confidence                                       45689999999999997                778889999999998820  


Q ss_pred             ----------CcceEEEEEecc-----------ccccccceEEEEEcCCC-----------CEEEEEeeCCeEEEEEccc
Q 048511          159 ----------TGIWMNVVTVGE-----------LSHSALGFYGGHWSPDG-----------RSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       159 ----------~~~~~~~~~~~~-----------~~~~~~~i~~i~~~~~~-----------~~l~~~~~dg~i~~~d~~~  206 (351)
                                ++.....+.+..           .....-.+.+++|....           .+.+++-.+-.+++|++.+
T Consensus       305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~  384 (1113)
T KOG0644|consen  305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT  384 (1113)
T ss_pred             ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence                      011111111000           00000111222232222           2334444566788999888


Q ss_pred             CcccCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEee
Q 048511          207 VDIDNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQ  284 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  284 (351)
                      +     +..+.+.+|...+..+.++|-. ++..+++.||...|||+..+.          ++... .+| ..+...+|++
T Consensus       385 g-----~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~----------pik~y~~gh-~kl~d~kFSq  448 (1113)
T KOG0644|consen  385 G-----QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI----------PIKHYFIGH-GKLVDGKFSQ  448 (1113)
T ss_pred             c-----hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------cceeeeccc-ceeeccccCC
Confidence            7     6688888999999999999954 555788999999999998876          22211 244 3466778999


Q ss_pred             eCCCcEEEEecCCCeEEEEecC
Q 048511          285 GKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       285 ~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        +|..++...+-|.+.|....
T Consensus       449 --dgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  449 --DGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             --CCceEecCCCCCceEEeccC
Confidence              89999999899999998754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.8e-16  Score=142.52  Aligned_cols=263  Identities=14%  Similarity=0.142  Sum_probs=178.7

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--ccceeeeEe--eecCCeEEecCCceeEEE
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--RKEVISLAS--YIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~~~~~~~  106 (351)
                      .-..+.|+        +-...++++...-.|++||.+.++.+..+....  ...+..+.+  -.+...+.++..++.+++
T Consensus      1066 ~pk~~~~h--------pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFH--------PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred             CCceeeec--------CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence            45567777        667789988877789999999888766554433  233444433  446678889999999999


Q ss_pred             EEecccc-ccceEEEEecCCCCCC--CCC-----cccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511          107 ESLLIGH-EDWVYSVQWEPPSTAP--SDG-----VSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF  178 (351)
Q Consensus       107 ~~~~~~h-~~~v~~l~~~p~~~~~--~~~-----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  178 (351)
                      |+.+..- ..+=.--+|.+-....  ..+     ..+++...|++++.-..|+|||...  ......+..    +....+
T Consensus      1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~--E~~~~diP~----~s~t~v 1211 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK--EQVVADIPY----GSSTLV 1211 (1387)
T ss_pred             ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc--ceeEeeccc----CCCccc
Confidence            8876543 1111111222110000  000     0023334477777789999999997  555555542    334456


Q ss_pred             EEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc--EEEEEeecCCCE-EEEEeCCCcEEEEcCCCc
Q 048511          179 YGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA--VMDISWSRSSDY-LLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       179 ~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~--v~~v~~sp~~~~-l~s~~~dg~i~vwd~~~~  254 (351)
                      +++.-+. .|+.+++|..||.|++||.+....+  .++...+.|...  |..+.+.+.|-- |++|+.||.|++||++..
T Consensus      1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             eeecccccCCceEEEeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            6655433 4689999999999999999876432  356677778877  999999987644 999999999999999985


Q ss_pred             cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecc
Q 048511          255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAT  317 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~  317 (351)
                      ..     ..+-.+......++.++++..++  ....+|+|+. +.|+||++.|+.+..++...
T Consensus      1290 ~~-----e~~~~iv~~~~yGs~lTal~VH~--hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1290 SK-----ETFLTIVAHWEYGSALTALTVHE--HAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred             cc-----cccceeeeccccCccceeeeecc--CCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence            31     12222222222244589999999  8899999999 99999999999888887553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.8e-17  Score=137.16  Aligned_cols=274  Identities=15%  Similarity=0.168  Sum_probs=194.3

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeee--cCCeEEe
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYI--EGPVLVA   97 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~   97 (351)
                      .....|..|.+.|..|.|+        ..|..|+|+|.|..|.+||............++...+....|-|  +...++.
T Consensus       133 ~l~~kL~~H~GcVntV~FN--------~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFN--------QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             hhhhcccCCCCccceeeec--------ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCcee
Confidence            4455788999999999999        89999999999999999999998888888877777777666665  4567777


Q ss_pred             cCCceeEEEE-----------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511           98 GSSSYQVSVE-----------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus        98 ~~~~~~~~~~-----------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  166 (351)
                      .+.++.++.-           ..+..|.++|..++..|.     ....      |.+++.|+.+.-+|++.  ......+
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~-----sp~~------f~S~geD~~v~~~Dlr~--~~pa~~~  271 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPD-----SPKP------FLSCGEDAVVFHIDLRQ--DVPAEKF  271 (559)
T ss_pred             ccccCceeeeeeccccceecceecccccCccceeeecCC-----CCCc------ccccccccceeeeeecc--CCcccee
Confidence            7777777543           235568999999999973     3345      99999999999999998  4333333


Q ss_pred             Eeccccccc---cceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCccc-------CcccccccccccccEEEEEeecCCC
Q 048511          167 TVGELSHSA---LGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDID-------NWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       167 ~~~~~~~~~---~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~-------~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                      ...  ..+.   ...+.++.+|... .+++++.|..+++||.+.-...       .+.+........-.|++++|+.++.
T Consensus       272 ~cr--~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  272 VCR--EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             eee--ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            211  1222   2577899999765 8899999999999998654321       1222222223345799999997665


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccC---ccceEEeccccccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMG---ENSWHEVARPQVHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF  309 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~  309 (351)
                      -|.+.-.|-.|++|.-..+......   ...-.....+++|...  |..+-|-. +...++++|++-|.|.||+-. +++
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-PrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-PRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-CccceEEecCccceEEEEecchhHH
Confidence            5555567888999954433321100   0001111225677543  88888754 378999999999999999977 777


Q ss_pred             hhceeecc
Q 048511          310 LKTLNHAT  317 (351)
Q Consensus       310 ~~~~~~~~  317 (351)
                      ++.+++-.
T Consensus       429 i~~MegDr  436 (559)
T KOG1334|consen  429 IRFMEGDR  436 (559)
T ss_pred             HHHhhccc
Confidence            77776543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=2.6e-17  Score=141.60  Aligned_cols=166  Identities=16%  Similarity=0.250  Sum_probs=127.3

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILA  192 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~  192 (351)
                      ...|+.+.|.|     -|...      |+.++.||.|++|.+..........-.-..+..|...|+++.|+| -...|++
T Consensus       627 gt~vtDl~WdP-----FD~~r------LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~  695 (1012)
T KOG1445|consen  627 GTLVTDLHWDP-----FDDER------LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV  695 (1012)
T ss_pred             CceeeecccCC-----CChHH------eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh
Confidence            35699999998     77778      999999999999999874222211111122347888999999999 4568899


Q ss_pred             EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV  272 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      ++.|.+|++||+.+.     +....+.+|.+.|.+++|||+|+.+++.+.||+|+||..+.+..         ++..-.+
T Consensus       696 asyd~Ti~lWDl~~~-----~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------pv~Eg~g  761 (1012)
T KOG1445|consen  696 ASYDSTIELWDLANA-----KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------PVYEGKG  761 (1012)
T ss_pred             hhccceeeeeehhhh-----hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------ccccCCC
Confidence            999999999999997     55778999999999999999999999999999999999988762         2222111


Q ss_pred             c-ccceeEEEEeeeCCCcEEEEecCCC----eEEEEecC
Q 048511          273 H-GHDINCVTIIQGKGNHRFVSGADEK----VARVFEAP  306 (351)
Q Consensus       273 ~-~~~i~~~~~~~~~~~~~l~s~~~dg----~v~vw~~~  306 (351)
                      . +..--.+.|.-  +++++++.+.|.    .|.+||..
T Consensus       762 pvgtRgARi~wac--dgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  762 PVGTRGARILWAC--DGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CccCcceeEEEEe--cCcEEEEecccccchhhhhhhhhh
Confidence            1 12234566766  788888777654    57788754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=4.5e-15  Score=132.00  Aligned_cols=263  Identities=25%  Similarity=0.371  Sum_probs=188.8

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCC-ceeEEEe-eCCcccCCCCCcc-EEEEeeC-CCcEEEEecCCCcccceeec
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTD-WIRSLDF-SLPVCTSGEAISI-LLVSSSQ-DKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~-~V~~l~~-~~~~~~~~~~~~~-~l~t~~~-dg~i~iwd~~~~~~~~~~~~   77 (351)
                      ++.|+.+.+|+... +. ..+..+.++.. .+..+.+ .        +++. .++..+. |+.+.+|+............
T Consensus        83 ~~~d~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  152 (466)
T COG2319          83 GSSDGTIKLWDLDN-GE-KLIKSLEGLHDSSVSKLALSS--------PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE  152 (466)
T ss_pred             ecCCCcEEEEEcCC-Cc-eeEEEEeccCCCceeeEEEEC--------CCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence            34689999999988 42 24556665443 6777777 6        5565 5555444 99999999987233333344


Q ss_pred             ccccceeeeEeeecCCeEEecCC-ceeEEEE--------EeccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSS-SYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMD  147 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d  147 (351)
                      .+...+..+.+++++..++.+.. ++.+.++        ..+.+|...|.+++|+      +++. .      +++++.|
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~------~~~~~~d  220 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS------PDGGLL------IASGSSD  220 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc------CCcceE------EEEecCC
Confidence            44556778999999998888775 7766555        3456688999999999      5665 4      6666999


Q ss_pred             CeEEEEeccCCCcceEE-EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511          148 KTMMIWQPEKTTGIWMN-VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~  226 (351)
                      +.|++||...  +.... .+.     .|.... ...|+|++..+++++.|+.+++|++.....    ....+..|...+.
T Consensus       221 ~~i~~wd~~~--~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~v~  288 (466)
T COG2319         221 GTIRLWDLST--GKLLRSTLS-----GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LLRTLSGHSSSVL  288 (466)
T ss_pred             CcEEEEECCC--CcEEeeecC-----CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EEEEEecCCccEE
Confidence            9999998875  55554 232     555554 338999998899999999999999987642    1333367788999


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe-cCCCeEEEEec
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG-ADEKVARVFEA  305 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~v~vw~~  305 (351)
                      ++.|+|++..+++++.|+.+.+||.......       .... ...|...+..+.| . .++..++.+ ..|+.+++|+.
T Consensus       289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~  358 (466)
T COG2319         289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLL-------SSLT-LKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDL  358 (466)
T ss_pred             EEEECCCCCEEEEeeCCCcEEEEEcCCCceE-------EEee-ecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeec
Confidence            9999998888888988999999988776521       1111 3366667899999 5 343455555 78899999998


Q ss_pred             Cch
Q 048511          306 PLS  308 (351)
Q Consensus       306 ~~~  308 (351)
                      ...
T Consensus       359 ~~~  361 (466)
T COG2319         359 RTG  361 (466)
T ss_pred             CCC
Confidence            743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=1.1e-16  Score=141.79  Aligned_cols=226  Identities=19%  Similarity=0.202  Sum_probs=158.9

Q ss_pred             CCCCCceEEEEEccCCCceE---EE-EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee-
Q 048511            1 MGGLDNKIHLYRGQRTGKFV---RA-CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT-   75 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~---~~-~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-   75 (351)
                      .|..+|.|.+||+.. +...   .+ .....|..+|+.+.|.    .+  +.+.-+++++.||.|..|+++.-...... 
T Consensus       260 gG~y~GqV~lWD~~~-~~~~~~s~ls~~~~sh~~~v~~vvW~----~~--~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~  332 (555)
T KOG1587|consen  260 GGCYNGQVVLWDLRK-GSDTPPSGLSALEVSHSEPVTAVVWL----QN--EHNTEFFSLSSDGSICSWDTDMLSLPVEGL  332 (555)
T ss_pred             eeccCceEEEEEccC-CCCCCCcccccccccCCcCeEEEEEe----cc--CCCCceEEEecCCcEeeeeccccccchhhc
Confidence            478999999999998 4321   11 2234688999999998    22  33356999999999999988754331111 


Q ss_pred             ----e------cccccceeeeEeeec-CCeEEecCCceeEEE----------------EEeccccccceEEEEecCCCCC
Q 048511           76 ----Q------STYRKEVISLASYIE-GPVLVAGSSSYQVSV----------------ESLLIGHEDWVYSVQWEPPSTA  128 (351)
Q Consensus        76 ----~------~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~----------------~~~~~~h~~~v~~l~~~p~~~~  128 (351)
                          .      .......+.+.|.+. ...+++|...|.+..                ...+..|.++|+++.++|..  
T Consensus       333 ~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~--  410 (555)
T KOG1587|consen  333 LLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY--  410 (555)
T ss_pred             ccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc--
Confidence                1      112345667777764 345666776666532                23456688999999999733  


Q ss_pred             CCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccC
Q 048511          129 PSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~  207 (351)
                         ..+      |++++ |.+|+||..... ...+     .....+...+++++|||... .++++..||.|.+||+...
T Consensus       411 ---~k~------fls~g-DW~vriWs~~~~-~~Pl-----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  411 ---PKN------FLSVG-DWTVRIWSEDVI-ASPL-----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ---cce------eeeec-cceeEeccccCC-CCcc-----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence               233      56665 999999987731 2222     22235566699999999764 7778888999999999766


Q ss_pred             cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ..   .++.+...+....+.+.|+++|+.|++|...|++.+|++...
T Consensus       475 ~~---~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  475 DE---EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cc---CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            53   555555555667788899999999999999999999998543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.2e-15  Score=123.30  Aligned_cols=236  Identities=13%  Similarity=0.151  Sum_probs=157.1

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      ..+..+.|+        .+...|..|+.|| .++++........ ........+..+-|+..=-.++.......++++..
T Consensus         6 ~ti~~~~~N--------qd~~~lsvGs~~G-yk~~~~~~~~k~~-~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    6 PTINFIGFN--------QDSTLLSVGSKDG-YKIFSCSPFEKCF-SKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             cceeeeeec--------cceeEEEccCCCc-eeEEecCchHHhh-cccCCCeEEEEeecccceeEEEecCCCceEEEEEc
Confidence            346666688        7888899999988 5788776544311 11111223334444433222222222222233222


Q ss_pred             ccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          110 LIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       110 ~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                      .+.       ...+|.++.++      .  +.      |+++-.+. |+|||++.  -+.++++...  +.+...+..+.
T Consensus        76 Kk~~~ICe~~fpt~IL~VrmN------r--~R------LvV~Lee~-IyIydI~~--MklLhTI~t~--~~n~~gl~AlS  136 (391)
T KOG2110|consen   76 KKKTTICEIFFPTSILAVRMN------R--KR------LVVCLEES-IYIYDIKD--MKLLHTIETT--PPNPKGLCALS  136 (391)
T ss_pred             ccCceEEEEecCCceEEEEEc------c--ce------EEEEEccc-EEEEeccc--ceeehhhhcc--CCCccceEeec
Confidence            111       23457777766      2  22      66665554 99999998  6666666532  23445566666


Q ss_pred             EcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc-EEEEcCCCcccccc
Q 048511          183 WSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT-TRVFAPWKNVASLM  259 (351)
Q Consensus       183 ~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~-i~vwd~~~~~~~~~  259 (351)
                      +++.+.+++.-+  ..|.|.+||..+-     +++..+.+|.+.+-+++|+++|.+|||+++.|+ ||||.+.+++.   
T Consensus       137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl-----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k---  208 (391)
T KOG2110|consen  137 PNNANCYLAYPGSTTSGDVVLFDTINL-----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK---  208 (391)
T ss_pred             cCCCCceEEecCCCCCceEEEEEcccc-----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE---
Confidence            666777887643  4599999999886     678899999999999999999999999999887 69999988872   


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                          +.++++-.. -..|.+++|++  ++++|++.|+.++|+||.++...
T Consensus       209 ----l~eFRRG~~-~~~IySL~Fs~--ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  209 ----LYEFRRGTY-PVSIYSLSFSP--DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ----eeeeeCCce-eeEEEEEEECC--CCCeEEEecCCCeEEEEEecccc
Confidence                223322211 23599999999  99999999999999999987443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=2.3e-15  Score=133.82  Aligned_cols=239  Identities=26%  Similarity=0.331  Sum_probs=181.0

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEe-eecCC-eEEec-C
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLAS-YIEGP-VLVAG-S   99 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~-~   99 (351)
                      .+..|...|.++.+.        +.+..++.++.|+.+.+|+..... ...............+.+ .+++. .+... .
T Consensus        60 ~~~~~~~~i~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (466)
T COG2319          60 LLRGHEDSITSIAFS--------PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS  131 (466)
T ss_pred             eeeeccceEEEEEEC--------CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC
Confidence            456899999999999        889999999999999999998876 333333222224444444 66666 44443 3


Q ss_pred             CceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEec
Q 048511          100 SSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       100 ~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      .++.+.++         ..+..|...|..++|+      +++..      +++++. |+.+++|++..  +.....+.  
T Consensus       132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~--  195 (466)
T COG2319         132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS------PDGKL------LASGSSLDGTIKLWDLRT--GKPLSTLA--  195 (466)
T ss_pred             CCccEEEEEecCCCeEEEEEecCcccEEEEEEC------CCCCE------EEecCCCCCceEEEEcCC--CceEEeec--
Confidence            35555443         4466799999999999      67767      888885 99999999997  55555555  


Q ss_pred             cccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCccccc-ccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511          170 ELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQK-VPSGHFAAVMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                         .|...+.+++|+|++. .+++++.|+.|++||...+     .... .+..|.... ...|+|++.++++++.|+.++
T Consensus       196 ---~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~  266 (466)
T COG2319         196 ---GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR  266 (466)
T ss_pred             ---cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence               5888999999999998 5555589999999988754     3344 577777765 348999998899999999999


Q ss_pred             EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|+......         .+.....|...+.++.|.|  ++..+++++.|+.+++|+..
T Consensus       267 ~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         267 LWDLRSSSS---------LLRTLSGHSSSVLSVAFSP--DGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             EeeecCCCc---------EEEEEecCCccEEEEEECC--CCCEEEEeeCCCcEEEEEcC
Confidence            999987761         1111156778899999999  78888888888999999876

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=8.8e-17  Score=122.86  Aligned_cols=221  Identities=15%  Similarity=0.101  Sum_probs=148.0

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL  110 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  110 (351)
                      .|.+-+++        |.+++|+.|..+|.|.+..+..-..-....              .|+           ..+-..
T Consensus        12 tvf~qa~s--------p~~~~l~agn~~G~iav~sl~sl~s~sa~~--------------~gk-----------~~iv~e   58 (325)
T KOG0649|consen   12 TVFAQAIS--------PSKQYLFAGNLFGDIAVLSLKSLDSGSAEP--------------PGK-----------LKIVPE   58 (325)
T ss_pred             HHHHHhhC--------CcceEEEEecCCCeEEEEEehhhhccccCC--------------CCC-----------cceeec
Confidence            45566777        779999999999999999987532211100              000           111234


Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc------eEEEEEeccccccccceEEEEEc
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI------WMNVVTVGELSHSALGFYGGHWS  184 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~~  184 (351)
                      ++|.++|+.++|..        .+      |++|+ ||.|+-|..+.....      +....+...-...-..|..+.+.
T Consensus        59 qahdgpiy~~~f~d--------~~------Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld  123 (325)
T KOG0649|consen   59 QAHDGPIYYLAFHD--------DF------LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD  123 (325)
T ss_pred             cccCCCeeeeeeeh--------hh------eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec
Confidence            78999999999982        23      66665 599999988752210      00011100001122358899999


Q ss_pred             CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511          185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      |..+.++.++.|+.++-||++++     +..+.+++|...|.++.-......+++|++||++||||+++.+...    .+
T Consensus       124 P~enSi~~AgGD~~~y~~dlE~G-----~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~----~i  194 (325)
T KOG0649|consen  124 PSENSILFAGGDGVIYQVDLEDG-----RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS----MI  194 (325)
T ss_pred             cCCCcEEEecCCeEEEEEEecCC-----EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE----Ee
Confidence            98888888889999999999998     4578899999999999986656679999999999999999988432    11


Q ss_pred             EEec---ccccc-ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          265 HEVA---RPQVH-GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       265 ~~~~---~~~~~-~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      ....   .++.| +..|-+++.    +..++++|+.- .+.+|.++ ......|
T Consensus       195 e~yk~~~~lRp~~g~wigala~----~edWlvCGgGp-~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAV----NEDWLVCGGGP-KLSLWHLRSSESTCVF  243 (325)
T ss_pred             ccccChhhcCcccCceeEEEec----cCceEEecCCC-ceeEEeccCCCceEEE
Confidence            1111   11122 234666665    45788887654 67899987 4444433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=6.9e-17  Score=136.41  Aligned_cols=204  Identities=17%  Similarity=0.170  Sum_probs=153.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.||.+.|.+-..    .......+|.++|.+-.|+        ++|.-|+|+|.||.|++|.-...-.          
T Consensus        81 ~s~DGkf~il~k~~----rVE~sv~AH~~A~~~gRW~--------~dGtgLlt~GEDG~iKiWSrsGMLR----------  138 (737)
T KOG1524|consen   81 CSNDGRFVILNKSA----RVERSISAHAAAISSGRWS--------PDGAGLLTAGEDGVIKIWSRSGMLR----------  138 (737)
T ss_pred             EcCCceEEEecccc----hhhhhhhhhhhhhhhcccC--------CCCceeeeecCCceEEEEeccchHH----------
Confidence            46788888876554    3445778999999999999        8899999999999999998543211          


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                .++.....+|+|++|.|      +.+-      ++-+ ..+.+.|=-+..  ..
T Consensus       139 --------------------------Stl~Q~~~~v~c~~W~p------~S~~------vl~c-~g~h~~IKpL~~--n~  177 (737)
T KOG1524|consen  139 --------------------------STVVQNEESIRCARWAP------NSNS------IVFC-QGGHISIKPLAA--NS  177 (737)
T ss_pred             --------------------------HHHhhcCceeEEEEECC------CCCc------eEEe-cCCeEEEeeccc--cc
Confidence                                      12333567899999995      4444      4444 334566666655  33


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      .+...+     .|.+-|.++.|++....+++|+.|-..++||-..      ..+.....|+.+|++++|+|+ ..++.++
T Consensus       178 k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------~~Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  178 KIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------ANLFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             ceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecccC------cccccCChhccceeeeeeccc-cceeeee
Confidence            333333     8999999999999999999999999999999877      457777889999999999999 6666666


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      .+ ++|+=..                     ..+.|..++|++  ||..++.|...|.+.+=-
T Consensus       246 ~n-t~R~~~p---------------------~~GSifnlsWS~--DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  246 YN-TARFSSP---------------------RVGSIFNLSWSA--DGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ee-eeeecCC---------------------CccceEEEEEcC--CCceeeccccCceEEEee
Confidence            43 4442221                     234589999999  999999999999876643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5.5e-16  Score=138.13  Aligned_cols=275  Identities=17%  Similarity=0.170  Sum_probs=186.7

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+..|.||...+ +  .++..+.+|..+++.+.+.    |.. +.-.++.+++.||+|++||...+..+.......  ++
T Consensus        35 ~~~~V~VyS~~T-g--~~i~~l~~~~a~l~s~~~~----~~~-~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~--~v  104 (792)
T KOG1963|consen   35 TGNFVKVYSTAT-G--ECITSLEDHTAPLTSVIVL----PSS-ENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL--PV  104 (792)
T ss_pred             eCCEEEEEecch-H--hhhhhcccccCccceeeec----CCC-ccceEEEEEecCccEEEecCCCcEEEEEEecCC--ce
Confidence            467899999998 7  5667999999999999998    320 113688899999999999999887766555433  22


Q ss_pred             eeeEeee----cCCeEEecCCceeE--------------EEEEe--------ccccccceEEEEecCCCCCCCCCcccCC
Q 048511           84 ISLASYI----EGPVLVAGSSSYQV--------------SVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQ  137 (351)
Q Consensus        84 ~~~~~~~----~~~~l~~~~~~~~~--------------~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~  137 (351)
                      ..+.+.+    ....+..+..+..+              ....+        +..|.. -.++.++      +.+++   
T Consensus       105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~------~~ge~---  174 (792)
T KOG1963|consen  105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDN------NSGEF---  174 (792)
T ss_pred             eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEc------CCceE---
Confidence            2222211    11111122111111              00111        222222 3456666      45554   


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                         .... .+..+.+|+..+  .. ...........|...+++.+++|++++++++..||+|.+|.--..+... .....
T Consensus       175 ---~~i~-~~~~~~~~~v~~--~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~  246 (792)
T KOG1963|consen  175 ---KGIV-HMCKIHIYFVPK--HT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTL  246 (792)
T ss_pred             ---EEEE-EeeeEEEEEecc--cc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceE
Confidence               4444 455688999887  33 2222222233566678999999999999999999999999654311111 23456


Q ss_pred             cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      +.-|...|++++|+++|.+|++|+..|.+.+|.+.+++.        +.+.   --+.+|..+.++|  |+.+.+....|
T Consensus       247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------qfLP---RLgs~I~~i~vS~--ds~~~sl~~~D  313 (792)
T KOG1963|consen  247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------QFLP---RLGSPILHIVVSP--DSDLYSLVLED  313 (792)
T ss_pred             EEecccccceeEEecCCceEeecccceEEEEEeecCCCc--------cccc---ccCCeeEEEEEcC--CCCeEEEEecC
Confidence            677999999999999999999999999999999988862        1222   2356799999999  99999999999


Q ss_pred             CeEEEEecC-chhhhceeecccc
Q 048511          298 KVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       298 g~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      ..|.+-... -....++++....
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCC
Confidence            999999875 5566666666544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=4.2e-18  Score=150.48  Aligned_cols=211  Identities=17%  Similarity=0.221  Sum_probs=154.8

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      +..+.+|..+|+|+.|.        ..|.+++||+.|..++||..++..++                             
T Consensus       183 ikrLlgH~naVyca~fD--------rtg~~Iitgsdd~lvKiwS~et~~~l-----------------------------  225 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFD--------RTGRYIITGSDDRLVKIWSMETARCL-----------------------------  225 (1113)
T ss_pred             HHHHHhhhhheeeeeec--------cccceEeecCccceeeeeeccchhhh-----------------------------
Confidence            34567899999999999        88999999999999999998877655                             


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                            ....||.+.|+.++.+      .+..+      +++++.|..|++|.+..  +..+..+.     +|++.|+++
T Consensus       226 ------As~rGhs~ditdlavs------~~n~~------iaaaS~D~vIrvWrl~~--~~pvsvLr-----ghtgavtai  280 (1113)
T KOG0644|consen  226 ------ASCRGHSGDITDLAVS------SNNTM------IAAASNDKVIRVWRLPD--GAPVSVLR-----GHTGAVTAI  280 (1113)
T ss_pred             ------ccCCCCccccchhccc------hhhhh------hhhcccCceEEEEecCC--CchHHHHh-----ccccceeee
Confidence                  3467899999999999      66777      99999999999999999  77776666     999999999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEccc-CcccCcccccccccccccEEEEEeecCCCEEEEEeCC-----------------
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----------------  243 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----------------  243 (351)
                      +|+|-.    +.+.||++++||.+- .......+.. +. ....+.++.|...+.-++|++.|                 
T Consensus       281 afsP~~----sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~  354 (1113)
T KOG0644|consen  281 AFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL  354 (1113)
T ss_pred             ccCccc----cCCCCCceEeccccccccccCCCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhhhccc
Confidence            999954    778899999999872 1110000000 00 11223333333333333333333                 


Q ss_pred             --------------------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          244 --------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       244 --------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                                          -.+++|++.++.          ......+|...+..+.++| .+.....+++.||...||
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----------l~H~l~ghsd~~yvLd~Hp-fn~ri~msag~dgst~iw  423 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----------LLHNLMGHSDEVYVLDVHP-FNPRIAMSAGYDGSTIIW  423 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccch----------hhhhhcccccceeeeeecC-CCcHhhhhccCCCceEee
Confidence                                345555555444          4555667888899999999 567777899999999999


Q ss_pred             ecC-chhhh
Q 048511          304 EAP-LSFLK  311 (351)
Q Consensus       304 ~~~-~~~~~  311 (351)
                      |+- |..++
T Consensus       424 di~eg~pik  432 (1113)
T KOG0644|consen  424 DIWEGIPIK  432 (1113)
T ss_pred             ecccCCcce
Confidence            975 54444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=1e-16  Score=123.81  Aligned_cols=219  Identities=17%  Similarity=0.204  Sum_probs=153.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee---
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ---   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---   76 (351)
                      +|..-|.|++|.+.+ .+  .+..++ .|...|+.+.-.        ++ +.|.|-+.|..+.+|++..........   
T Consensus        30 sg~~~G~V~~w~lqt-~r--~~~~~r~~g~~~it~lq~~--------p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~   97 (323)
T KOG0322|consen   30 SGLSVGIVKMWVLQT-ER--DLPLIRLFGRLFITNLQSI--------PN-DSLDTQGRDPLLILWTIAYSAFISIHSIVV   97 (323)
T ss_pred             cccccceEEEEEeec-Cc--cchhhhhhccceeeceeec--------CC-cchhhcCCCceEEEEEccCcceEEEeeeec
Confidence            467889999999998 42  344556 567889999988        54 688899999999999986522110000   


Q ss_pred             -----------ccc--------------------------------------ccceeeeEeee-cCC--eEEecCCceeE
Q 048511           77 -----------STY--------------------------------------RKEVISLASYI-EGP--VLVAGSSSYQV  104 (351)
Q Consensus        77 -----------~~~--------------------------------------~~~~~~~~~~~-~~~--~l~~~~~~~~~  104 (351)
                                 ...                                      ...+.+..+.. .+.  ++++|-+.+.+
T Consensus        98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv  177 (323)
T KOG0322|consen   98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV  177 (323)
T ss_pred             cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence                       000                                      00111111111 111  34445556655


Q ss_pred             EEEEe------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511          105 SVESL------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus       105 ~~~~~------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  166 (351)
                      ..|..                  ...|..+|.++.|.+      .-..      =++|+.+..+..|.+....+......
T Consensus       178 v~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas------~~~r------Gisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  178 VIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS------SCDR------GISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEccCCceeeccccccccccchhhccCcceeeeech------hhcC------CcCCCccccceeeeeccccCcccccc
Confidence            44432                  345888999999984      3333      56778888899999886433322211


Q ss_pred             EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcE
Q 048511          167 TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT  246 (351)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i  246 (351)
                      .   ..-....+..+..-||++.+|+++.|++||+|..++.     .++..+.-|...|++++|+|+..++|.+++|++|
T Consensus       246 e---~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI  317 (323)
T KOG0322|consen  246 E---ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI  317 (323)
T ss_pred             e---EEecCCCccceEEccCCcEEeecccCCcEEEEEeccC-----CchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence            1   1122345778899999999999999999999999997     7899999999999999999999999999999999


Q ss_pred             EEEcC
Q 048511          247 RVFAP  251 (351)
Q Consensus       247 ~vwd~  251 (351)
                      .+|++
T Consensus       318 SLWkL  322 (323)
T KOG0322|consen  318 SLWKL  322 (323)
T ss_pred             Eeeec
Confidence            99986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=4.1e-16  Score=123.75  Aligned_cols=222  Identities=14%  Similarity=0.237  Sum_probs=169.3

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      -..+|+|.+|+        ++...+|.+.....|.||.....+.-                                ...
T Consensus         9 ~~~pitchAwn--------~drt~iAv~~~~~evhiy~~~~~~~w--------------------------------~~~   48 (361)
T KOG1523|consen    9 LLEPITCHAWN--------SDRTQIAVSPNNHEVHIYSMLGADLW--------------------------------EPA   48 (361)
T ss_pred             ccCceeeeeec--------CCCceEEeccCCceEEEEEecCCCCc--------------------------------eec
Confidence            45799999999        88999999999999999998765422                                233


Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      +++..|...|+++.|.      +..+.      |++++.|..-++|....+ +.+..++.+.   .++...+++.|+|.+
T Consensus        49 htls~Hd~~vtgvdWa------p~snr------Ivtcs~drnayVw~~~~~-~~WkptlvLl---RiNrAAt~V~WsP~e  112 (361)
T KOG1523|consen   49 HTLSEHDKIVTGVDWA------PKSNR------IVTCSHDRNAYVWTQPSG-GTWKPTLVLL---RINRAATCVKWSPKE  112 (361)
T ss_pred             eehhhhCcceeEEeec------CCCCc------eeEccCCCCccccccCCC-CeeccceeEE---EeccceeeEeecCcC
Confidence            5678899999999999      56666      999999999999998432 6666665532   566779999999999


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-Cccce--
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-GENSW--  264 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~--  264 (351)
                      +.+++|+....|.||-++... ..|.....-+.+.+.|++++|+|++-+|++|+.|+..|||..--....+. ....|  
T Consensus       113 nkFAVgSgar~isVcy~E~EN-dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs  191 (361)
T KOG1523|consen  113 NKFAVGSGARLISVCYYEQEN-DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS  191 (361)
T ss_pred             ceEEeccCccEEEEEEEeccc-ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence            999999999999999876532 22333344456788999999999999999999999999997522111110 00111  


Q ss_pred             -----EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          265 -----HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       265 -----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                           ..+......++.+..+.|+|  .|..|+-.+.|..+.+=|..+.
T Consensus       192 k~PFG~lm~E~~~~ggwvh~v~fs~--sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  192 KMPFGQLMSEASSSGGWVHGVLFSP--SGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CCcHHHHHHhhccCCCceeeeEeCC--CCCEeeEecCCCceEEeecCCC
Confidence                 12222324456799999999  8999999999999999997643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.5e-16  Score=124.15  Aligned_cols=228  Identities=16%  Similarity=0.175  Sum_probs=166.5

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTYRK   81 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~   81 (351)
                      -....|.||.....+.++..++++.|...|++|+|+        +..+.|+||+.|..-.+|....+ .....       
T Consensus        29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa--------p~snrIvtcs~drnayVw~~~~~~~Wkpt-------   93 (361)
T KOG1523|consen   29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA--------PKSNRIVTCSHDRNAYVWTQPSGGTWKPT-------   93 (361)
T ss_pred             cCCceEEEEEecCCCCceeceehhhhCcceeEEeec--------CCCCceeEccCCCCccccccCCCCeeccc-------
Confidence            345689999988834489999999999999999999        88999999999999999998433 22221       


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                -.+..++..++++.|+      |..+.      ||+|+....|.||-++..+.-
T Consensus        94 --------------------------lvLlRiNrAAt~V~Ws------P~enk------FAVgSgar~isVcy~E~ENdW  135 (361)
T KOG1523|consen   94 --------------------------LVLLRINRAATCVKWS------PKENK------FAVGSGARLISVCYYEQENDW  135 (361)
T ss_pred             --------------------------eeEEEeccceeeEeec------CcCce------EEeccCccEEEEEEEecccce
Confidence                                      1245578899999999      67778      999999999999999874333


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------------CcccccccccccccEEEE
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------------NWQPQKVPSGHFAAVMDI  228 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~v~~v  228 (351)
                      ++....   -..+...|.+++|+|++-.|++|+.|+..++|..--....             ..++..++....+.|..+
T Consensus       136 WVsKhi---kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v  212 (361)
T KOG1523|consen  136 WVSKHI---KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV  212 (361)
T ss_pred             ehhhhh---CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence            332211   1245667999999999999999999999999976321110             012223343456789999


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      .|+|+|..|+-.+.|..+.+-|......         .+.......-+..++.|..   ...++.++.|.
T Consensus       213 ~fs~sG~~lawv~Hds~v~~~da~~p~~---------~v~~~~~~~lP~ls~~~is---e~~vv~ag~~c  270 (361)
T KOG1523|consen  213 LFSPSGNRLAWVGHDSTVSFVDAAGPSE---------RVQSVATAQLPLLSVSWIS---ENSVVAAGYDC  270 (361)
T ss_pred             EeCCCCCEeeEecCCCceEEeecCCCch---------hccchhhccCCceeeEeec---CCceeecCCCC
Confidence            9999999999999999999999876641         1222222224566777765   33455555553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=129.10  Aligned_cols=279  Identities=14%  Similarity=0.089  Sum_probs=195.4

Q ss_pred             CCCCCceEEEEEccCC---CceEEEEee-eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee
Q 048511            1 MGGLDNKIHLYRGQRT---GKFVRACEL-KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~---~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +|+.|-.+++|+++..   ...+++... ..|...|.|++|.        ....+|++|+.+++|...|+++.+.+....
T Consensus        73 SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--------~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~  144 (609)
T KOG4227|consen   73 SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--------LENRFLYSGERWGTVIKHDIETKQSIYVAN  144 (609)
T ss_pred             ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--------cCCeeEecCCCcceeEeeecccceeeeeec
Confidence            5889999999998750   111223222 2466899999999        778899999999999999999887654443


Q ss_pred             cc-cccceeeeEeeecCCeEEecCCceeEEEEEeccc--c---------ccceEEEEecCCCCCCCCCcccCCCceeEEe
Q 048511           77 ST-YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG--H---------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSA  144 (351)
Q Consensus        77 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--h---------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~  144 (351)
                      .. ....+..+..+|..+.+++...++.+.+|..-..  |         .....++.|+|     ....+      |++.
T Consensus       145 ~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P-----~~P~L------i~~~  213 (609)
T KOG4227|consen  145 ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP-----ETPAL------ILVN  213 (609)
T ss_pred             ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC-----CCcee------EEec
Confidence            22 2457888999999999999998888887765322  2         23345667776     34445      9999


Q ss_pred             ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----
Q 048511          145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----  220 (351)
Q Consensus       145 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----  220 (351)
                      +..+-+-+||.+.......+.--...++......+++.|+|+|+.+++--....-.+||+....    .++.++..    
T Consensus       214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R----~~V~k~D~N~~G  289 (609)
T KOG4227|consen  214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR----CFVLKSDHNPNG  289 (609)
T ss_pred             cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----ceeEeccCCCCc
Confidence            9999999999987432222111111122223345788999999999988777778889987754    22333331    


Q ss_pred             --ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------CccceEEeccccccccceeEEEEeee
Q 048511          221 --HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-------------GENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       221 --~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                        ....+.+++|..+- .+++|+.+-.|++|.+........             ....-..+..+++|..-++.+.|+| 
T Consensus       290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-  367 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-  367 (609)
T ss_pred             ceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-
Confidence              12346778887664 499999999999999864332211             0011123455778999999999999 


Q ss_pred             CCCcEEEEecCCCeEEEEec
Q 048511          286 KGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~  305 (351)
                       ...+|++.+-...++||..
T Consensus       368 -H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  368 -HNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             -CcceEeccchhhheecccc
Confidence             7889999999999999973

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=7.1e-16  Score=141.86  Aligned_cols=265  Identities=13%  Similarity=0.116  Sum_probs=175.4

Q ss_pred             EEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc------ceeeccccccee
Q 048511           11 YRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS------ANTQSTYRKEVI   84 (351)
Q Consensus        11 w~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~   84 (351)
                      |+++.    ..+..+..|...|..++.+    +   +.+.+|+|||.||+|++|+...-...      .......+..+.
T Consensus      1034 W~p~G----~lVAhL~Ehs~~v~k~a~s----~---~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNPRG----ILVAHLHEHSSAVIKLAVS----S---EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred             CCccc----eEeehhhhccccccceeec----C---CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE
Confidence            56654    6788999999999999998    2   45589999999999999998753221      111222356677


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEecc---------------cc-ccceEEE-EecCCCCCCCCCcccCCCceeEEeecC
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESLLI---------------GH-EDWVYSV-QWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~h-~~~v~~l-~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      .+.....+..++++..+|.+.+.+.-.               .+ .+.+.++ +|.-     ....     ..++.+..-
T Consensus      1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-----~~~S-----~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-----IVQS-----HVLVYATDL 1172 (1431)
T ss_pred             EEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-----cccc-----eeEEEEEec
Confidence            888899999999999999886654311               11 1222222 2221     1222     238888889


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-cccccEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAAVM  226 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~  226 (351)
                      +.|..||++.....+.....     ...+.|++++.+|.++++++|+..|.+.+||++-+     .++.... .+..+|+
T Consensus      1173 ~~iv~~D~r~~~~~w~lk~~-----~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~-----~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQ-----LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR-----VPILSWEHPARAPIR 1242 (1431)
T ss_pred             cceEEecchhhhhHHhhhcC-----ccccceeEEEecCCceEEEEecCCceEEEEEeecC-----ceeecccCcccCCcc
Confidence            99999999984333333322     34567999999999999999999999999999886     3344332 3456788


Q ss_pred             EEEeecCC---CEEEEE-e-CCCcEEEEcCCCccccccCccceEE--ecc-----cc-----ccccceeEEEEeeeCCCc
Q 048511          227 DISWSRSS---DYLLSV-S-HDQTTRVFAPWKNVASLMGENSWHE--VAR-----PQ-----VHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       227 ~v~~sp~~---~~l~s~-~-~dg~i~vwd~~~~~~~~~~~~~~~~--~~~-----~~-----~~~~~i~~~~~~~~~~~~  289 (351)
                      .+..+|-.   ...+++ + ..+.|.+|++.++.+...   .|..  ...     +.     .+.-......+..  .+.
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v---l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~--~~~ 1317 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV---LWASDGAPILSYALPSNDARKPDSLAGISCGVCE--KNG 1317 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCCCceeeeecccCcceEE---EEcCCCCcchhhhcccccCCCCCcccceeeeccc--CCc
Confidence            88877733   344444 3 578899999998864321   1111  000     00     1111122233333  577


Q ss_pred             EEEEecCCCeEEEEecCchhhh
Q 048511          290 RFVSGADEKVARVFEAPLSFLK  311 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~~~~~~  311 (351)
                      .+.+|+.|..||.||.......
T Consensus      1318 ~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eeeecCCccceeeccCCCcccc
Confidence            8999999999999997643333

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.72  E-value=1.6e-16  Score=127.16  Aligned_cols=215  Identities=15%  Similarity=0.165  Sum_probs=161.9

Q ss_pred             CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec-CCCcccceeecccccceeeeEeeecCCeE
Q 048511           17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL-ALRGSSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      .++..+..++||.+.|+....-        +..+-+++.+.|.++|||-- +.++....+....+....++.+.++...|
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~--------~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L   83 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILI--------PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL   83 (404)
T ss_pred             cchhhhhhhcCchhhhhhheec--------cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE
Confidence            3445677889999999998888        66778999999999999954 44555556666667889999999999999


Q ss_pred             EecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC----
Q 048511           96 VAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT----  159 (351)
Q Consensus        96 ~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----  159 (351)
                      .++-..+.+..            .+....|...|..+-|+      .....      +++.+.|..+.---.+.+.    
T Consensus        84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~------~~~e~------V~s~~~dk~~~~hc~e~~~~lg~  151 (404)
T KOG1409|consen   84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS------LTHEW------VLSTGKDKQFAWHCTESGNRLGG  151 (404)
T ss_pred             EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec------CCcee------EEEeccccceEEEeeccCCcccc
Confidence            99988887743            33456788889888888      45556      7777776654322222100    


Q ss_pred             -----------------------cc--eEEEE-----EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511          160 -----------------------GI--WMNVV-----TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       160 -----------------------~~--~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~  209 (351)
                                             ++  ..+..     .+....+|...+++++|.+....|++|..|..+.+||+-..+ 
T Consensus       152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-  230 (404)
T KOG1409|consen  152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-  230 (404)
T ss_pred             eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-
Confidence                                   00  00000     011234788899999999999999999999999999997654 


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                         .....+.+|...|..++..+--+.+++++.||.|.+|+++...
T Consensus       231 ---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  231 ---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence               3466788899999999998888899999999999999997654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=2.4e-14  Score=115.91  Aligned_cols=229  Identities=11%  Similarity=0.088  Sum_probs=152.3

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL   86 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   86 (351)
                      .+++.+... +...+-..+   ..+|.+|.++          .++|+.+=.+ .|.|||+++.+.+..+...        
T Consensus        69 ~Lkv~~~Kk-~~~ICe~~f---pt~IL~VrmN----------r~RLvV~Lee-~IyIydI~~MklLhTI~t~--------  125 (391)
T KOG2110|consen   69 KLKVVHFKK-KTTICEIFF---PTSILAVRMN----------RKRLVVCLEE-SIYIYDIKDMKLLHTIETT--------  125 (391)
T ss_pred             eEEEEEccc-CceEEEEec---CCceEEEEEc----------cceEEEEEcc-cEEEEecccceeehhhhcc--------
Confidence            466666665 322222222   4578899988          4566666654 4999999988776555421        


Q ss_pred             EeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCcceEE
Q 048511           87 ASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~  164 (351)
                                              ..+...+..+.++      ..+.+      ++.-+  ..|.|.+||+.+  -+.+.
T Consensus       126 ------------------------~~n~~gl~AlS~n------~~n~y------lAyp~s~t~GdV~l~d~~n--l~~v~  167 (391)
T KOG2110|consen  126 ------------------------PPNPKGLCALSPN------NANCY------LAYPGSTTSGDVVLFDTIN--LQPVN  167 (391)
T ss_pred             ------------------------CCCccceEeeccC------CCCce------EEecCCCCCceEEEEEccc--ceeee
Confidence                                    2244455555555      34445      55432  368899999998  66666


Q ss_pred             EEEeccccccccceEEEEEcCCCCEEEEEeeCCe-EEEEEcccCcccCcccccccccc--cccEEEEEeecCCCEEEEEe
Q 048511          165 VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA-FHLWRNVGVDIDNWQPQKVPSGH--FAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~s~~  241 (351)
                      .+.     .|.+.+-+++|+++|.+||+++..|+ ||||.+.++     +.++++...  ...|.+++|+|++++|++.+
T Consensus       168 ~I~-----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-----~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS  237 (391)
T KOG2110|consen  168 TIN-----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-----QKLYEFRRGTYPVSIYSLSFSPDSQFLAASS  237 (391)
T ss_pred             EEE-----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc-----cEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence            666     89999999999999999999999886 789999887     445555532  34688999999999999999


Q ss_pred             CCCcEEEEcCCCccccccC-ccc-----------------------eE---Eeccccccccce-eEEEEeeeCCCcEEEE
Q 048511          242 HDQTTRVFAPWKNVASLMG-ENS-----------------------WH---EVARPQVHGHDI-NCVTIIQGKGNHRFVS  293 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~-~~~-----------------------~~---~~~~~~~~~~~i-~~~~~~~~~~~~~l~s  293 (351)
                      ..++|.||.+......... ...                       |.   .+...+...... ..+.+.+......+..
T Consensus       238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v  317 (391)
T KOG2110|consen  238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV  317 (391)
T ss_pred             CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence            9999999998765422110 000                       00   000001111111 2233332236788999


Q ss_pred             ecCCCeEEEEecC
Q 048511          294 GADEKVARVFEAP  306 (351)
Q Consensus       294 ~~~dg~v~vw~~~  306 (351)
                      ++.||.+..|.++
T Consensus       318 as~dG~~y~y~l~  330 (391)
T KOG2110|consen  318 ASYDGHLYSYRLP  330 (391)
T ss_pred             EEcCCeEEEEEcC
Confidence            9999999999976

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=9.7e-17  Score=131.73  Aligned_cols=195  Identities=19%  Similarity=0.233  Sum_probs=136.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.||++|||++.. -  ..+.....|.+.|.+|.|+        +++++|++-+.| ..+||+.+++..+.....   
T Consensus       161 tgg~dg~lRv~~~Ps-~--~t~l~e~~~~~eV~DL~FS--------~dgk~lasig~d-~~~VW~~~~g~~~a~~t~---  225 (398)
T KOG0771|consen  161 TGGTDGTLRVWEWPS-M--LTILEEIAHHAEVKDLDFS--------PDGKFLASIGAD-SARVWSVNTGAALARKTP---  225 (398)
T ss_pred             eccccceEEEEecCc-c--hhhhhhHhhcCccccceeC--------CCCcEEEEecCC-ceEEEEeccCchhhhcCC---
Confidence            588999999999655 2  4556778899999999999        899999999999 899999999855443321   


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                    .........+.|+      .++.. ..-.+++....-+.|+.||+..-.+
T Consensus       226 ------------------------------~~k~~~~~~cRF~------~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  226 ------------------------------FSKDEMFSSCRFS------VDNAQ-ETLRLAASQFPGGGVRLCDISLWSG  268 (398)
T ss_pred             ------------------------------cccchhhhhceec------ccCCC-ceEEEEEecCCCCceeEEEeeeecc
Confidence                                          1112233445555      33310 0000133333445677776654222


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      .  ..++..........|.+++.+++|++++.|+.||.|.|++...-+    .....-+.|...|+.+.|+|+.+++++.
T Consensus       269 ~--~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----~~~~vk~aH~~~VT~ltF~Pdsr~~~sv  342 (398)
T KOG0771|consen  269 S--NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----RLQYVKEAHLGFVTGLTFSPDSRYLASV  342 (398)
T ss_pred             c--cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----eeEeehhhheeeeeeEEEcCCcCccccc
Confidence            1  111111111233479999999999999999999999999997753    2334456799999999999999999999


Q ss_pred             eCCCcEEEEcCCC
Q 048511          241 SHDQTTRVFAPWK  253 (351)
Q Consensus       241 ~~dg~i~vwd~~~  253 (351)
                      +.|..+.|..+.-
T Consensus       343 Ss~~~~~v~~l~v  355 (398)
T KOG0771|consen  343 SSDNEAAVTKLAV  355 (398)
T ss_pred             ccCCceeEEEEee
Confidence            9999999987754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.1e-15  Score=135.83  Aligned_cols=227  Identities=15%  Similarity=0.110  Sum_probs=150.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      .+..|.+||.+. ..   ...+..|...+.+..|+        |+|+.|+.++.+   ..|.+||+.++....       
T Consensus       182 ~~~~i~i~d~dg-~~---~~~lt~~~~~v~~p~wS--------PDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------  242 (429)
T PRK01742        182 QPYEVRVADYDG-FN---QFIVNRSSQPLMSPAWS--------PDGSKLAYVSFENKKSQLVVHDLRSGARKV-------  242 (429)
T ss_pred             ceEEEEEECCCC-CC---ceEeccCCCccccceEc--------CCCCEEEEEEecCCCcEEEEEeCCCCceEE-------
Confidence            467899999876 32   24566788899999999        889999988754   369999997654221       


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCCC
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKTT  159 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~  159 (351)
                                                +..+.+|   ...++|+      ||++.      |+.++ .+|.+.||.+....
T Consensus       243 --------------------------l~~~~g~---~~~~~wS------PDG~~------La~~~~~~g~~~Iy~~d~~~  281 (429)
T PRK01742        243 --------------------------VASFRGH---NGAPAFS------PDGSR------LAFASSKDGVLNIYVMGANG  281 (429)
T ss_pred             --------------------------EecCCCc---cCceeEC------CCCCE------EEEEEecCCcEEEEEEECCC
Confidence                                      1112333   2357999      78887      77654 68876666443211


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL  238 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  238 (351)
                      +.. ..+.     .+...+....|+|+|+.|+..+ .++...||++.....    ....+ .+..  ....|+|+|++|+
T Consensus       282 ~~~-~~lt-----~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~~l-~~~~--~~~~~SpDG~~ia  348 (429)
T PRK01742        282 GTP-SQLT-----SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GASLV-GGRG--YSAQISADGKTLV  348 (429)
T ss_pred             CCe-Eeec-----cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeEEe-cCCC--CCccCCCCCCEEE
Confidence            332 2222     3445577899999999776555 578888888754321    11222 2333  4578999999998


Q ss_pred             EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe---cCchhhhceee
Q 048511          239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE---APLSFLKTLNH  315 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~---~~~~~~~~~~~  315 (351)
                      ..+.++ +.+||+.++..        ..+..  ..  ....++|+|  ++++|+.++.++.+.+|.   ..+..++.+..
T Consensus       349 ~~~~~~-i~~~Dl~~g~~--------~~lt~--~~--~~~~~~~sP--dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        349 MINGDN-VVKQDLTSGST--------EVLSS--TF--LDESPSISP--NGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             EEcCCC-EEEEECCCCCe--------EEecC--CC--CCCCceECC--CCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            887764 66699877752        11111  11  235678999  999999999888777776   45777777765


Q ss_pred             ccc
Q 048511          316 ATF  318 (351)
Q Consensus       316 ~~~  318 (351)
                      +.+
T Consensus       414 ~~g  416 (429)
T PRK01742        414 SDG  416 (429)
T ss_pred             CCC
Confidence            543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=2e-16  Score=133.71  Aligned_cols=222  Identities=15%  Similarity=0.222  Sum_probs=151.8

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceee-----eEeeecCCeEEecC
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVIS-----LASYIEGPVLVAGS   99 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~~   99 (351)
                      .|...|.|+.|.        .+...+.+++.+..++-|++.+.. ......+..  .....     ..-......+++++
T Consensus        12 r~~e~vc~v~w~--------~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s   82 (737)
T KOG1524|consen   12 RNSEKVCCVDWS--------SNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS   82 (737)
T ss_pred             ccceeEEeeccc--------ccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEc
Confidence            467778899998        666666666544444444554332 221111110  01111     01111234666777


Q ss_pred             CceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          100 SSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       100 ~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                      .++.+.++.       ....|.+.+.+-.|+      +||.-      |++++.||.|++|.-.   |....++.     
T Consensus        83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~------~dGtg------Llt~GEDG~iKiWSrs---GMLRStl~-----  142 (737)
T KOG1524|consen   83 NDGRFVILNKSARVERSISAHAAAISSGRWS------PDGAG------LLTAGEDGVIKIWSRS---GMLRSTVV-----  142 (737)
T ss_pred             CCceEEEecccchhhhhhhhhhhhhhhcccC------CCCce------eeeecCCceEEEEecc---chHHHHHh-----
Confidence            777665443       467899999999999      78888      9999999999999855   43333332     


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ....+|+|++|.|+.+.++-+. .+.+.+=-+..+     ..+...++|.+-|.++.|++..+++++|++|-..+|||-.
T Consensus       143 Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n-----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN-----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             hcCceeEEEEECCCCCceEEec-CCeEEEeecccc-----cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            4566899999999887665543 344555545443     2356778999999999999999999999999999999975


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ..           .+.....|.++|++++|.|  + ..++.+|..
T Consensus       217 G~-----------~Lf~S~~~ey~ITSva~np--d-~~~~v~S~n  247 (737)
T KOG1524|consen  217 GA-----------NLFTSAAEEYAITSVAFNP--E-KDYLLWSYN  247 (737)
T ss_pred             Cc-----------ccccCChhccceeeeeecc--c-cceeeeeee
Confidence            44           4556668999999999999  5 666666643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=8.8e-17  Score=136.17  Aligned_cols=181  Identities=18%  Similarity=0.278  Sum_probs=140.0

Q ss_pred             EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ..+.+.||++-|+|+.|+      .+|.+      |++||.|-.+.|||.-.  .+.+..+.    .+|...|.++.|-|
T Consensus        42 lE~eL~GH~GCVN~LeWn------~dG~l------L~SGSDD~r~ivWd~~~--~KllhsI~----TgHtaNIFsvKFvP  103 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWN------ADGEL------LASGSDDTRLIVWDPFE--YKLLHSIS----TGHTANIFSVKFVP  103 (758)
T ss_pred             hhhhhccccceecceeec------CCCCE------EeecCCcceEEeecchh--cceeeeee----cccccceeEEeeec
Confidence            446689999999999999      89999      99999999999999987  66666665    48999999999998


Q ss_pred             --CCCEEEEEeeCCeEEEEEcccCccc-----CcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCcccc
Q 048511          186 --DGRSILAHGYGGAFHLWRNVGVDID-----NWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVAS  257 (351)
Q Consensus       186 --~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~  257 (351)
                        +.+.+++|+.|..|++||+...+..     .......+..|...|..++-.|++ +.+.++++||+|+-+|++.....
T Consensus       104 ~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  104 YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence              4578999999999999999752211     123455667789999999999988 77899999999999999885422


Q ss_pred             ccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          258 LMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      .........+..+...--...|+.++| .+..+|+.|+.|-.+++||.
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltisp-~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTISP-SRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeecC-CCCceEEecCCCchhhhhhh
Confidence            100001111111111123478999999 56889999999999999994

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=5.7e-17  Score=134.55  Aligned_cols=223  Identities=12%  Similarity=0.114  Sum_probs=173.4

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE------E
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------S  105 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~  105 (351)
                      -..+.++        .+|+.|+.++.-|.|..+|..+.....++...  ..+..+.|-.+.++++++...+..      .
T Consensus       132 PY~~~yt--------rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt  201 (545)
T KOG1272|consen  132 PYHLDYT--------RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGT  201 (545)
T ss_pred             Ceeeeec--------CCccEEEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcchHHHHhhhhceEEEecCCCc
Confidence            4567888        89999999999999999999998776655432  366677787777777776654432      2


Q ss_pred             EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          106 VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       106 ~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ....++.| ..|..+.|.|      .--+      |++++..|.++--|+..  |+.+..+.     ...+.+..++-+|
T Consensus       202 ElHClk~~-~~v~rLeFLP------yHfL------L~~~~~~G~L~Y~DVS~--GklVa~~~-----t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  202 ELHCLKRH-IRVARLEFLP------YHFL------LVAASEAGFLKYQDVST--GKLVASIR-----TGAGRTDVMKQNP  261 (545)
T ss_pred             EEeehhhc-Cchhhhcccc------hhhe------eeecccCCceEEEeech--hhhhHHHH-----ccCCccchhhcCC
Confidence            33445544 4688999995      4445      99999999999999999  77776665     4556778888999


Q ss_pred             CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      -+..+-+|...|+|.+|.....     .++..+..|.++|.+|++.++|+|++|.+.|..++|||+++..          
T Consensus       262 ~NaVih~GhsnGtVSlWSP~sk-----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~----------  326 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSK-----EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY----------  326 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCc-----chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc----------
Confidence            9999999999999999998886     5677888899999999999999999999999999999998776          


Q ss_pred             EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      .+..... ..+...++++.   ..+||. +....|.||.
T Consensus       327 ql~t~~t-p~~a~~ls~Sq---kglLA~-~~G~~v~iw~  360 (545)
T KOG1272|consen  327 QLHTYRT-PHPASNLSLSQ---KGLLAL-SYGDHVQIWK  360 (545)
T ss_pred             ccceeec-CCCcccccccc---ccceee-ecCCeeeeeh
Confidence            2222222 23467888986   344444 4555889997

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=130.35  Aligned_cols=237  Identities=16%  Similarity=0.268  Sum_probs=175.6

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-  109 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  109 (351)
                      .|..++|.        |+|..|+.+.. ..+.+||.+.+..++... .+...+.+++|+.+|+.+++|+.+..+.+|.. 
T Consensus        14 ci~d~afk--------PDGsqL~lAAg-~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   14 CINDIAFK--------PDGTQLILAAG-SRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             chheeEEC--------CCCceEEEecC-CEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            79999999        78887777664 468999999987765443 45677889999999999999998888877754 


Q ss_pred             -----ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511          110 -----LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS  184 (351)
Q Consensus       110 -----~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (351)
                           -..|.+.|.|+.|+      |-...      |++++-. ..-+|....  .. +...      .....+.+.+|.
T Consensus        84 lEG~LkYSH~D~IQCMsFN------P~~h~------LasCsLs-dFglWS~~q--K~-V~K~------kss~R~~~CsWt  141 (1081)
T KOG1538|consen   84 LEGILKYSHNDAIQCMSFN------PITHQ------LASCSLS-DFGLWSPEQ--KS-VSKH------KSSSRIICCSWT  141 (1081)
T ss_pred             ccceeeeccCCeeeEeecC------chHHH------hhhcchh-hccccChhh--hh-HHhh------hhheeEEEeeec
Confidence                 23588899999999      45556      8887654 366887765  11 1111      234468889999


Q ss_pred             CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-----CEEEEEeCCCcEEEEcCCCcccccc
Q 048511          185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-----DYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      .||++++.|-.+|+|.+-+-...+.   ..+...-+..++|++++|+|..     ..+++.....++.++.+...     
T Consensus       142 nDGqylalG~~nGTIsiRNk~gEek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----  213 (1081)
T KOG1538|consen  142 NDGQYLALGMFNGTISIRNKNGEEK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----  213 (1081)
T ss_pred             CCCcEEEEeccCceEEeecCCCCcc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----
Confidence            9999999999999999875433221   2233444577899999999963     46777778888888876432     


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceee
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH  315 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~  315 (351)
                            .+.+.+.-+-...|+.+.+  +|.+++.|+.|+.+++|..+|-.+.++..
T Consensus       214 ------~Igk~r~L~FdP~CisYf~--NGEy~LiGGsdk~L~~fTR~GvrLGTvg~  261 (1081)
T KOG1538|consen  214 ------QIGKDRALNFDPCCISYFT--NGEYILLGGSDKQLSLFTRDGVRLGTVGE  261 (1081)
T ss_pred             ------eecccccCCCCchhheecc--CCcEEEEccCCCceEEEeecCeEEeeccc
Confidence                  3444444455678999999  99999999999999999988766665543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=4.6e-15  Score=127.05  Aligned_cols=220  Identities=15%  Similarity=0.188  Sum_probs=147.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-----------
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-----------   69 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-----------   69 (351)
                      +|+.||+|+||.+.+ +  .++.+.. -.+.|.||+|+    |.  ++-..||.+-.+ .+.|-+..-+           
T Consensus       417 sGsdDGtvriWEi~T-g--Rcvr~~~-~d~~I~~vaw~----P~--~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~el  485 (733)
T KOG0650|consen  417 SGSDDGTVRIWEIAT-G--RCVRTVQ-FDSEIRSVAWN----PL--SDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKEL  485 (733)
T ss_pred             ecCCCCcEEEEEeec-c--eEEEEEe-ecceeEEEEec----CC--CCceeEEEEecC-ceEEeCccccchhhhcchhhh
Confidence            589999999999999 8  4555554 25589999999    33  333445544333 2333332111           


Q ss_pred             ----------------------cccc---eeecccccceeeeEeeecCCeEEecCCc---eeEEEEE-------------
Q 048511           70 ----------------------GSSA---NTQSTYRKEVISLASYIEGPVLVAGSSS---YQVSVES-------------  108 (351)
Q Consensus        70 ----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-------------  108 (351)
                                            ....   .+...+...+..+.|+..|.+|++...+   ..+.+.+             
T Consensus       486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks  565 (733)
T KOG0650|consen  486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS  565 (733)
T ss_pred             hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence                                  1000   1122235567788899999998874321   1111100             


Q ss_pred             ------------------------------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511          109 ------------------------------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus       109 ------------------------------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                                                          .+......|..++.+      +.|.-      |+.++.|+.+..
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msih------p~GDn------li~gs~d~k~~W  633 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIH------PNGDN------LILGSYDKKMCW  633 (733)
T ss_pred             CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeec------CCCCe------EEEecCCCeeEE
Confidence                                                011223456666676      56666      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc--cC--cccCccccccccccccc----
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV--GV--DIDNWQPQKVPSGHFAA----  224 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~--~~--~~~~~~~~~~~~~~~~~----  224 (351)
                      +|+.... +..+++.     .|...+++++|++.-.++++|+.||++.||--.  +.  +.....+++.+.+|...    
T Consensus       634 fDldlss-kPyk~lr-----~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g  707 (733)
T KOG0650|consen  634 FDLDLSS-KPYKTLR-----LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG  707 (733)
T ss_pred             EEcccCc-chhHHhh-----hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence            9998632 2223333     788899999999999999999999999998532  10  11112567888898765    


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                      |..+.|+|...+|++++.||+|++|
T Consensus       708 VLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  708 VLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eEeecccCCCceEEecCCCceEEee
Confidence            8899999999999999999999998

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.4e-15  Score=129.27  Aligned_cols=240  Identities=17%  Similarity=0.147  Sum_probs=159.7

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +....++..|.+.|+.++|.        +....|++++.||+|++|++......                          
T Consensus       284 w~ik~tl~s~~d~ir~l~~~--------~sep~lit~sed~~lk~WnLqk~~~s--------------------------  329 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFH--------PSEPVLITASEDGTLKLWNLQKAKKS--------------------------  329 (577)
T ss_pred             cceeeeeecchhhhhhhhcC--------CCCCeEEEeccccchhhhhhcccCCc--------------------------
Confidence            44455888899999999999        77889999999999999999542111                          


Q ss_pred             CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE----EEecccccc
Q 048511           99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV----VTVGELSHS  174 (351)
Q Consensus        99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~  174 (351)
                       ....+..+-++.+|.++|.|+++.      .++..      +.+|+.||+|+.|++... ...-..    .-...+.+|
T Consensus       330 -~~~~~epi~tfraH~gPVl~v~v~------~n~~~------~ysgg~Dg~I~~w~~p~n-~dp~ds~dp~vl~~~l~Gh  395 (577)
T KOG0642|consen  330 -AEKDVEPILTFRAHEGPVLCVVVP------SNGEH------CYSGGIDGTIRCWNLPPN-QDPDDSYDPSVLSGTLLGH  395 (577)
T ss_pred             -cccceeeeEEEecccCceEEEEec------CCceE------EEeeccCceeeeeccCCC-CCcccccCcchhccceecc
Confidence             112234556789999999999999      78888      999999999999976531 111000    111224489


Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCC
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWK  253 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~  253 (351)
                      ...++.+++++....|++++.||++++|+......    +........+...++.+-.....+ ++...-+.-.++++..
T Consensus       396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev  471 (577)
T KOG0642|consen  396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV  471 (577)
T ss_pred             ccceeeeeecccccceeeecCCceEEeeccCCcCc----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence            99999999999999999999999999999876531    111111122334556554433122 2222223333333333


Q ss_pred             ccccccCccceEEecccc----ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          254 NVASLMGENSWHEVARPQ----VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      ..       ....+....    .....+..+.++|  +..+.+++.+|+.|+++|.. +..+.....+...
T Consensus       472 ~s-------~~~~~~s~~~~~~~~~~~in~vVs~~--~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s  533 (577)
T KOG0642|consen  472 VS-------DLLIFESSASPGPRRYPQINKVVSHP--TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDS  533 (577)
T ss_pred             hh-------heeeccccCCCcccccCccceEEecC--CCCeeEecccCCceecccccccccchheeeccce
Confidence            32       111111110    1112377888888  78999999999999999976 8777776665533

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=2.9e-14  Score=131.53  Aligned_cols=272  Identities=12%  Similarity=0.092  Sum_probs=173.2

Q ss_pred             CCCCCceEEEEEccC----CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----
Q 048511            1 MGGLDNKIHLYRGQR----TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS----   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----   72 (351)
                      |||.||+|++|+...    .+......++.--...+.++.+.        +.++.+|.++.||.|++.+++.....    
T Consensus      1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~--------~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC--------GNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec--------cCCCeEEEEcCCCeEEEEEcccccccccee
Confidence            689999999999764    13334444555456789999999        88999999999999999999763111    


Q ss_pred             ---ceeecccccceeeeE-eee-cC-CeEEecCCceeEEEEEec----------cccccceEEEEecCCCCCCCCCcccC
Q 048511           73 ---ANTQSTYRKEVISLA-SYI-EG-PVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus        73 ---~~~~~~~~~~~~~~~-~~~-~~-~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~~~~  136 (351)
                         ........+.+.+|. +.. .. ..++.+...+.+..|...          .-..+.|++++.+      +.++.  
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id------p~~~W-- 1209 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID------PWCNW-- 1209 (1431)
T ss_pred             eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec------CCceE--
Confidence               111111122233332 222 12 245555555555444432          2234679999999      67778  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC---CEEEEEe--eCCeEEEEEcccCcccC
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG---RSILAHG--YGGAFHLWRNVGVDIDN  211 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~--~dg~i~~~d~~~~~~~~  211 (351)
                          +++|...|.+.+||++-  +..+.....    .+..+|+.+..+|-.   ...++++  ..+.|.+|++.++..  
T Consensus      1210 ----lviGts~G~l~lWDLRF--~~~i~sw~~----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~-- 1277 (1431)
T KOG1240|consen 1210 ----LVIGTSRGQLVLWDLRF--RVPILSWEH----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR-- 1277 (1431)
T ss_pred             ----EEEecCCceEEEEEeec--CceeecccC----cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc--
Confidence                99999999999999998  666555542    334678888777633   4555544  468899999988732  


Q ss_pred             ccccccccc-------------------ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-------------
Q 048511          212 WQPQKVPSG-------------------HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-------------  259 (351)
Q Consensus       212 ~~~~~~~~~-------------------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------  259 (351)
                         ...+..                   +.-.....++...+..+.+|+.|..|+.||........-             
T Consensus      1278 ---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1278 ---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred             ---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence               111111                   111112223333456889999999999999876654400             


Q ss_pred             -------------------------CccceEEe--------ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          260 -------------------------GENSWHEV--------ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       260 -------------------------~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                                               ........        .....|...|+++++... +..+|++++.||.|+||.
T Consensus      1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~-~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKS-EQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhcc-CccEEEEecCCCeeeecC
Confidence                                     00000000        011246677999998872 367999999999999994

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.1e-14  Score=118.59  Aligned_cols=210  Identities=9%  Similarity=0.032  Sum_probs=153.9

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      -+++|..++..          ...|++|-.+|.+.+|....+.......                               
T Consensus       104 ~~~~I~gl~~~----------dg~Litc~~sG~l~~~~~k~~d~hss~l-------------------------------  142 (412)
T KOG3881|consen  104 GTKSIKGLKLA----------DGTLITCVSSGNLQVRHDKSGDLHSSKL-------------------------------  142 (412)
T ss_pred             ccccccchhhc----------CCEEEEEecCCcEEEEeccCCccccccc-------------------------------
Confidence            34556666554          4578888889999999987553210000                               


Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC--CeEEEEeccCCCcceEEEEE--ecccc--ccccceEEE
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD--KTMMIWQPEKTTGIWMNVVT--VGELS--HSALGFYGG  181 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~--~~~~~--~~~~~i~~i  181 (351)
                      ..+..+ ..+..+.-.|     .+..+      +++|+..  ..+.|||++.  ...+..-+  ....-  .-.-+++.+
T Consensus       143 ~~la~g-~g~~~~r~~~-----~~p~I------va~GGke~~n~lkiwdle~--~~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  143 IKLATG-PGLYDVRQTD-----TDPYI------VATGGKENINELKIWDLEQ--SKQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             eeeecC-CceeeeccCC-----CCCce------EecCchhcccceeeeeccc--ceeeeeccCCCCccccceeeeeeccc
Confidence            011111 3455555554     33344      8889998  8899999998  33222111  00000  112346788


Q ss_pred             EEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511          182 HWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       182 ~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      .|-+.  ...|++++.-+.+++||.+.++    .|+.++.-.+.+|+++...|+++++++|..-+.+..||.+.+..   
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl---  281 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL---  281 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccC----cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee---
Confidence            89887  7899999999999999999875    77888888888999999999999999999999999999998872   


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                            ....+.+..+.|+++..+|  ...+++++|-|..|||+|+..
T Consensus       282 ------~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  282 ------LGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ------eccccCCccCCcceEEEcC--CCceEEeeccceeEEEeeccc
Confidence                  3344677788899999999  789999999999999999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=1.9e-13  Score=108.75  Aligned_cols=170  Identities=17%  Similarity=0.231  Sum_probs=124.9

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-Ccccceeeccc-ccce
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-RGSSANTQSTY-RKEV   83 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~-~~~~   83 (351)
                      +.+.|||-.. .  .++.++. -..+|.+|.+.          .+.|+..- ++.|.||.+.+ .+.+..+.... +...
T Consensus        75 NkviIWDD~k-~--~~i~el~-f~~~I~~V~l~----------r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl  139 (346)
T KOG2111|consen   75 NKVIIWDDLK-E--RCIIELS-FNSEIKAVKLR----------RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL  139 (346)
T ss_pred             ceEEEEeccc-C--cEEEEEE-eccceeeEEEc----------CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCce
Confidence            5799999444 3  4555554 46799999998          44666554 57899999984 44444444433 2333


Q ss_pred             eeeEeeecCCeEEe-cCCceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe-EE
Q 048511           84 ISLASYIEGPVLVA-GSSSYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-MM  151 (351)
Q Consensus        84 ~~~~~~~~~~~l~~-~~~~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-i~  151 (351)
                      .++.-..+..+|+. |...+++++..          .+.+|...|.|++.+      .+|.+      +||+|..|+ ||
T Consensus       140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln------~~Gt~------vATaStkGTLIR  207 (346)
T KOG2111|consen  140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN------LQGTL------VATASTKGTLIR  207 (346)
T ss_pred             EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc------CCccE------EEEeccCcEEEE
Confidence            33333334444444 45566665543          456899999999999      89999      999999998 88


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~  207 (351)
                      |||.++  +..+..++.+   .....|++++|+|+..+|++++..|+++||.++..
T Consensus       208 IFdt~~--g~~l~E~RRG---~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  208 IFDTED--GTLLQELRRG---VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCC--CcEeeeeecC---CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999999  8888887743   34557999999999999999999999999999764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.65  E-value=5e-13  Score=115.13  Aligned_cols=227  Identities=12%  Similarity=0.080  Sum_probs=143.5

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccc-eee-cccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSA-NTQ-STYR   80 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~-~~~-~~~~   80 (351)
                      .++.|.+|+++.++++....... ..+....+.|+        +++++|++++. ++.|.+|++.+..... ... ....
T Consensus        55 ~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~--------~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~  125 (330)
T PRK11028         55 PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTD--------HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL  125 (330)
T ss_pred             CCCcEEEEEECCCCceEEeeeec-CCCCceEEEEC--------CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC
Confidence            46889999997435554444333 33456789999        88988888764 8899999997433221 111 1112


Q ss_pred             cceeeeEeeecCCeEEecC-CceeEEEEEecc-c-------------cccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           81 KEVISLASYIEGPVLVAGS-SSYQVSVESLLI-G-------------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~-------------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      .....++++|+++.+++.+ .+..+.++..-. +             .......+.|+      +++++      ++++.
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~------pdg~~------lyv~~  193 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH------PNQQY------AYCVN  193 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC------CCCCE------EEEEe
Confidence            3456778999998886544 446666655422 1             01224678999      78888      77776


Q ss_pred             c-CCeEEEEeccCCCcce--EEEEEecccc-ccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCccccccccc
Q 048511          146 M-DKTMMIWQPEKTTGIW--MNVVTVGELS-HSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       146 ~-d~~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      . ++.|.+||+....+..  +..+...... ........+.++|++++++++.. ++.|.+|++...... .+.+.....
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~  272 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPT  272 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEec
Confidence            5 8999999998422332  2222211000 11122346889999999998864 689999999654210 111222111


Q ss_pred             ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCC
Q 048511          221 HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWK  253 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~  253 (351)
                       ......+.++|+|++|+++.. +++|.+|++..
T Consensus       273 -~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        273 -ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             -cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence             124567899999999987765 89999998753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=2.9e-15  Score=126.70  Aligned_cols=164  Identities=14%  Similarity=0.188  Sum_probs=114.1

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE--EE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV--SV  106 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~  106 (351)
                      ...|+|+.|-    |   .+...++.+-.+|.+.++|.......         ...+....+++..+.+.......  ..
T Consensus       219 ktsvT~ikWv----p---g~~~~Fl~a~~sGnlyly~~~~~~~~---------t~p~~~~~k~~~~f~i~t~ksk~~rNP  282 (636)
T KOG2394|consen  219 KSSVTCIKWV----P---GSDSLFLVAHASGNLYLYDKEIVCGA---------TAPSYQALKDGDQFAILTSKSKKTRNP  282 (636)
T ss_pred             ccceEEEEEE----e---CCCceEEEEEecCceEEeeccccccC---------CCCcccccCCCCeeEEeeeeccccCCc
Confidence            3689999999    3   34456666778999999987322111         01111112233333332111111  11


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (351)
                      +..+.--.+.|+.++|+      +||++      ||+.+.||.+||||..+  .+.+..++     ..-+...|++|+||
T Consensus       283 v~~w~~~~g~in~f~FS------~DG~~------LA~VSqDGfLRvF~fdt--~eLlg~mk-----SYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  283 VARWHIGEGSINEFAFS------PDGKY------LATVSQDGFLRIFDFDT--QELLGVMK-----SYFGGLLCVCWSPD  343 (636)
T ss_pred             cceeEeccccccceeEc------CCCce------EEEEecCceEEEeeccH--HHHHHHHH-----hhccceEEEEEcCC
Confidence            11112233479999999      89999      99999999999999998  44444333     34567899999999


Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      |++|++|+.|..|.||.+...     +.+..-++|.++|..|+|.|
T Consensus       344 GKyIvtGGEDDLVtVwSf~er-----RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEER-----RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccEEEecCCcceEEEEEeccc-----eEEEeccccccceeeEeecc
Confidence            999999999999999999887     56888899999999999983

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.62  E-value=5e-14  Score=110.51  Aligned_cols=139  Identities=12%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE--eeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH--GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      +...+|.++.. ......+.+    ....+|.+++|+|+++.+++.  ..+..|.+||++.      ..+..+.  ...+
T Consensus        37 ~~~~l~~~~~~-~~~~~~i~l----~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~------~~i~~~~--~~~~  103 (194)
T PF08662_consen   37 GEFELFYLNEK-NIPVESIEL----KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG------KKIFSFG--TQPR  103 (194)
T ss_pred             eeEEEEEEecC-CCccceeec----cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc------cEeEeec--CCCc
Confidence            44666666542 222333331    234569999999999987654  3567999999974      3455553  4567


Q ss_pred             EEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC------
Q 048511          226 MDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD------  296 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------  296 (351)
                      ..+.|+|+|++|++++.   .|.|.+||+++.+          .+.... | ..++.++|+|  +|++|+++..      
T Consensus       104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----------~i~~~~-~-~~~t~~~WsP--dGr~~~ta~t~~r~~~  169 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----------KISTFE-H-SDATDVEWSP--DGRYLATATTSPRLRV  169 (194)
T ss_pred             eEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----------Eeeccc-c-CcEEEEEEcC--CCCEEEEEEeccceec
Confidence            88999999999998874   4679999998665          454443 2 2478999999  9999998874      


Q ss_pred             CCeEEEEecCchhhhce
Q 048511          297 EKVARVFEAPLSFLKTL  313 (351)
Q Consensus       297 dg~v~vw~~~~~~~~~~  313 (351)
                      |..++||+..|+.+...
T Consensus       170 dng~~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  170 DNGFKIWSFQGRLLYKK  186 (194)
T ss_pred             cccEEEEEecCeEeEec
Confidence            78899999998766543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.61  E-value=7.5e-14  Score=112.18  Aligned_cols=274  Identities=18%  Similarity=0.247  Sum_probs=170.2

Q ss_pred             CCCCCceEEEEEccCC--CceEEEEeeeecC------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec
Q 048511            1 MGGLDNKIHLYRGQRT--GKFVRACELKGHT------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL   66 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~--~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~   66 (351)
                      ||..+|.|.+|.-+..  +++.....++.|.            ..|..+.|.    +.  .+...++..+.|.+|++|.+
T Consensus        42 tGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~----~~--~n~a~FLlstNdktiKlWKi  115 (433)
T KOG1354|consen   42 TGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL----DD--GNLAEFLLSTNDKTIKLWKI  115 (433)
T ss_pred             ecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec----CC--CCccEEEEecCCcceeeeee
Confidence            6889999999975541  3444556677775            468899998    32  44557777888999999999


Q ss_pred             CCCcccce-eeccc---ccceeeeEeeecCCeEEecCCcee--EEEEEe-ccccccceEEEEecCCCCCCCCCcccCCCc
Q 048511           67 ALRGSSAN-TQSTY---RKEVISLASYIEGPVLVAGSSSYQ--VSVESL-LIGHEDWVYSVQWEPPSTAPSDGVSCQQPS  139 (351)
Q Consensus        67 ~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~-~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~  139 (351)
                      ........ .....   ...+.++.      ....+..+..  ..+.+. ..+|+--|+++.++      .|.+.     
T Consensus       116 ~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N------sD~Et-----  178 (433)
T KOG1354|consen  116 RERGSKKEGYNLPEEGPPGTITSLR------LPVEGRHDLEVEASPRRVYANAHTYHINSISVN------SDKET-----  178 (433)
T ss_pred             eccccccccccccccCCCCccceee------ceeeccccceeeeeeeeeccccceeEeeeeeec------Cccce-----
Confidence            76543321 10000   00111110      1111111111  122222 24688889999999      78887     


Q ss_pred             eeEEeecCCeEEEEeccCCCcc-eEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCccc-----Cc
Q 048511          140 SILSASMDKTMMIWQPEKTTGI-WMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDID-----NW  212 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~-----~~  212 (351)
                       ++++ .|-.|.+|+++-..+. .+..++...+..-..-|++..|+|. .+.++-++..|+|++.|++..-..     .+
T Consensus       179 -~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 -FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             -Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence             7776 6778999999863222 2223333333334456889999995 467778888999999999853210     00


Q ss_pred             c------cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-----------
Q 048511          213 Q------PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-----------  275 (351)
Q Consensus       213 ~------~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------  275 (351)
                      .      ...-+..--..|..+.|+++|+|+++-.. -+|++||+.....         ++...+.|..           
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~---------pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK---------PVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC---------cceEEeehHhHHHHHHHHhhc
Confidence            0      00111112346888999999999997643 6899999955442         2322233321           


Q ss_pred             ----ceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511          276 ----DINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLK  311 (351)
Q Consensus       276 ----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  311 (351)
                          .-..++|+.  ++..+++|+....+++|++.....+
T Consensus       327 D~IfdKFec~~sg--~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  327 DAIFDKFECSWSG--NDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             cchhheeEEEEcC--CcceEecccccceEEEecCCCCcce
Confidence                135677887  7889999999999999996633333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=4e-14  Score=115.46  Aligned_cols=217  Identities=9%  Similarity=0.101  Sum_probs=150.7

Q ss_pred             CCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC--CcEEEEecCCCcccceeec
Q 048511            2 GGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD--KVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d--g~i~iwd~~~~~~~~~~~~   77 (351)
                      |-.+|.+++|..+. +.  -..+..+..+ ..+..|.-+    +   .....+|+||..  ..+++||++..+.+.....
T Consensus       121 c~~sG~l~~~~~k~-~d~hss~l~~la~g-~g~~~~r~~----~---~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  121 CVSSGNLQVRHDKS-GDLHSSKLIKLATG-PGLYDVRQT----D---TDPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             EecCCcEEEEeccC-CccccccceeeecC-CceeeeccC----C---CCCceEecCchhcccceeeeecccceeeeeccC
Confidence            45688899998884 21  1223333333 345566655    2   344577779988  8899999987644332221


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      ..+ ..+.                        + .-.-+++++.|.|..    +...      ||+++.-+.+++||.+.
T Consensus       192 vpn-D~L~------------------------L-rVPvW~tdi~Fl~g~----~~~~------fat~T~~hqvR~YDt~~  235 (412)
T KOG3881|consen  192 VPN-DRLG------------------------L-RVPVWITDIRFLEGS----PNYK------FATITRYHQVRLYDTRH  235 (412)
T ss_pred             CCC-cccc------------------------c-eeeeeeccceecCCC----CCce------EEEEecceeEEEecCcc
Confidence            100 0000                        0 012346788888521    1445      99999999999999996


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  237 (351)
                      + ..++..+.     ..+.+++++...|.++.+++|..-+.+..||++.++    .....+.+-.+.|++|..+|.+++|
T Consensus       236 q-RRPV~~fd-----~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k----l~g~~~kg~tGsirsih~hp~~~~l  305 (412)
T KOG3881|consen  236 Q-RRPVAQFD-----FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK----LLGCGLKGITGSIRSIHCHPTHPVL  305 (412)
T ss_pred             c-CcceeEec-----cccCcceeeeecCCCcEEEEecccchhheecccCce----eeccccCCccCCcceEEEcCCCceE
Confidence            3 44555555     446789999999999999999999999999999985    3455588889999999999999999


Q ss_pred             EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ++++-|+.|||+|+++.+          .+... .-...++++-+.+
T Consensus       306 as~GLDRyvRIhD~ktrk----------ll~kv-YvKs~lt~il~~~  341 (412)
T KOG3881|consen  306 ASCGLDRYVRIHDIKTRK----------LLHKV-YVKSRLTFILLRD  341 (412)
T ss_pred             EeeccceeEEEeecccch----------hhhhh-hhhccccEEEecC
Confidence            999999999999998865          22221 2233467777755

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.60  E-value=5.1e-13  Score=106.91  Aligned_cols=254  Identities=14%  Similarity=0.138  Sum_probs=168.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ...|+.|.+|++.. -++.  ..+..-.+++.++.|+        |+| ..|.+..-|-.|.+|.+.+........  ..
T Consensus        67 ~yk~~~vqvwsl~Q-pew~--ckIdeg~agls~~~WS--------PdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK  133 (447)
T KOG4497|consen   67 AYKDPKVQVWSLVQ-PEWY--CKIDEGQAGLSSISWS--------PDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PK  133 (447)
T ss_pred             eeccceEEEEEeec-ceeE--EEeccCCCcceeeeEC--------CCcceEeeeecceeEEEEEEeccceeEEecc--cc
Confidence            35688999999987 5443  4666667899999999        778 566677889999999998765432211  12


Q ss_pred             cceeeeEeeecCCeEEecCCce------------------------------------eEEEEEe------cccc-ccce
Q 048511           81 KEVISLASYIEGPVLVAGSSSY------------------------------------QVSVESL------LIGH-EDWV  117 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~------------------------------------~~~~~~~------~~~h-~~~v  117 (351)
                      ......+|+++|++.+...+..                                    .+.++..      +.-| .-.+
T Consensus       134 ~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~  213 (447)
T KOG4497|consen  134 TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGL  213 (447)
T ss_pred             cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccce
Confidence            2345566777777666533211                                    0011111      0111 2357


Q ss_pred             EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC---------------C------------------------
Q 048511          118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK---------------T------------------------  158 (351)
Q Consensus       118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------~------------------------  158 (351)
                      ..++|+      |.+++      |+.|+.|+.+|+.+--+               .                        
T Consensus       214 k~v~ws------P~~qf------lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p  281 (447)
T KOG4497|consen  214 KFVEWS------PCNQF------LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTP  281 (447)
T ss_pred             eEEEec------cccce------EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCC
Confidence            788899      67788      99999999998876432               0                        


Q ss_pred             ---------Ccc--------e--EEEEE-eccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEcccCcccCccccc
Q 048511          159 ---------TGI--------W--MNVVT-VGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       159 ---------~~~--------~--~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~  216 (351)
                               +.+        .  +..++ ....+.....+--++|++|..++++-...  +.+.+||++..+      +.
T Consensus       282 ~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~------l~  355 (447)
T KOG4497|consen  282 TDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK------LH  355 (447)
T ss_pred             CccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh------hh
Confidence                     000        0  00000 01112223456778999999999887644  789999998853      33


Q ss_pred             ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      ..-....+|....|.|....|+.+.....+++|......          .+..+ ..+-.|..+.|..  +|..++-.+.
T Consensus       356 avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~----------~V~vP-~~GF~i~~l~W~~--~g~~i~l~~k  422 (447)
T KOG4497|consen  356 AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR----------VVGVP-KKGFNIQKLQWLQ--PGEFIVLCGK  422 (447)
T ss_pred             hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce----------EEecC-CCCceeeeEEecC--CCcEEEEEcC
Confidence            333356689999999999888888878889999875543          33333 3456799999998  8889998888


Q ss_pred             CCe
Q 048511          297 EKV  299 (351)
Q Consensus       297 dg~  299 (351)
                      |..
T Consensus       423 Daf  425 (447)
T KOG4497|consen  423 DAF  425 (447)
T ss_pred             Cce
Confidence            864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.6e-13  Score=107.94  Aligned_cols=163  Identities=12%  Similarity=0.193  Sum_probs=116.1

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ...+|.++.+.      ++  .      +++. ..+.|.||..... .+.++.+..   ........+++-..+..+|+.
T Consensus        93 f~~~I~~V~l~------r~--r------iVvv-l~~~I~VytF~~n-~k~l~~~et---~~NPkGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   93 FNSEIKAVKLR------RD--R------IVVV-LENKIYVYTFPDN-PKLLHVIET---RSNPKGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             eccceeeEEEc------CC--e------EEEE-ecCeEEEEEcCCC-hhheeeeec---ccCCCceEeecCCCCceEEEc
Confidence            35679999988      33  2      4444 4678999998842 333333332   122333444443334445555


Q ss_pred             Ee-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc-EEEEcCCCccccccCccceEEeccc
Q 048511          193 HG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT-TRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       193 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                      -+ .-|.|.|-|+...+.   .+...+.+|.+.|.+++++.+|..+||+|..|+ |||||..++..       ..++.+-
T Consensus       154 Pg~k~GqvQi~dL~~~~~---~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-------l~E~RRG  223 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKP---NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-------LQELRRG  223 (346)
T ss_pred             CCCccceEEEEEhhhcCc---CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-------eeeeecC
Confidence            44 459999999987642   235678899999999999999999999999987 79999999872       2233332


Q ss_pred             cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          271 QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      . ....|.|++|+|  +..+|+++|+-|+++||.+..
T Consensus       224 ~-d~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  224 V-DRADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             C-chheEEEEEeCC--CccEEEEEcCCCeEEEEEeec
Confidence            1 224599999999  999999999999999999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.7e-13  Score=110.92  Aligned_cols=247  Identities=21%  Similarity=0.302  Sum_probs=161.3

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecC-CeEEecCCceeE----
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEG-PVLVAGSSSYQV----  104 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~----  104 (351)
                      ..+..++|+        +.-..+|++..|-+|++|+-.. .....+......++.+++|.|.+ ..++++...+..    
T Consensus        99 ~dlr~~aWh--------qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~  169 (445)
T KOG2139|consen   99 IDLRGVAWH--------QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD  169 (445)
T ss_pred             cceeeEeec--------hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence            357788998        5566788999999999999876 55556666667799999999965 455555443321    


Q ss_pred             -------EE----------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEE
Q 048511          105 -------SV----------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus       105 -------~~----------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~  166 (351)
                             +.          +....+| .+|++++|.      +||..      +++++. |..|.|||+.++.+..+.  
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn------~dgt~------l~tAS~gsssi~iWdpdtg~~~pL~--  234 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN------EDGTI------LVTASFGSSSIMIWDPDTGQKIPLI--  234 (445)
T ss_pred             CcccccccccccccccchhheeCCCC-ceeeEEEEc------CCCCE------EeecccCcceEEEEcCCCCCccccc--
Confidence                   00          0112344 689999999      78888      888875 678999999984333332  


Q ss_pred             EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcE
Q 048511          167 TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTT  246 (351)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i  246 (351)
                      .     ...+.+.-+.|+||+.+|+++.-|+..++|+....    +...+...+ .+.|...+|+|+|++|+..+. |.-
T Consensus       235 ~-----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~----wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp  303 (445)
T KOG2139|consen  235 P-----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS----WTKERWILG-SGRVQTACWSPCGSFLLFACS-GSP  303 (445)
T ss_pred             c-----cCCCceeeEEEcCCCCEEEEecccceeeeehhccc----ceecceecc-CCceeeeeecCCCCEEEEEEc-CCc
Confidence            1     23456888999999999999999999999976543    233333333 348999999999988654432 333


Q ss_pred             EEEcCCCcccccc-----CccceEEecccc---------ccccceeEEEEeeeCCCcEEEEecCCC--------eEEEEe
Q 048511          247 RVFAPWKNVASLM-----GENSWHEVARPQ---------VHGHDINCVTIIQGKGNHRFVSGADEK--------VARVFE  304 (351)
Q Consensus       247 ~vwd~~~~~~~~~-----~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~l~s~~~dg--------~v~vw~  304 (351)
                      ++|.+........     ..+....+..++         .-.+.+.+++|.|  .|.+||+.-..+        .|.+||
T Consensus       304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp--sGeyLav~fKg~~~v~~~k~~i~~fd  381 (445)
T KOG2139|consen  304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP--SGEYLAVIFKGQSFVLLCKLHISRFD  381 (445)
T ss_pred             eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC--CCCEEEEEEcCCchhhhhhhhhhhhc
Confidence            4555432221110     001111111111         1245689999999  899998765433        366677


Q ss_pred             cCchhhhce
Q 048511          305 APLSFLKTL  313 (351)
Q Consensus       305 ~~~~~~~~~  313 (351)
                      ........+
T Consensus       382 tr~sp~vel  390 (445)
T KOG2139|consen  382 TRKSPPVEL  390 (445)
T ss_pred             ccccCceEE
Confidence            654433333

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.8e-14  Score=119.50  Aligned_cols=274  Identities=15%  Similarity=0.150  Sum_probs=191.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~   78 (351)
                      +|+.|..|.+||+.. ++ ..+.-..||...|..-.|.    |.  .+...+++++.||.+++=.+.......  .....
T Consensus       159 SgSDD~~vv~WdW~~-~~-~~l~f~SGH~~NvfQaKFi----P~--s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~  230 (559)
T KOG1334|consen  159 SGSDDLQVVVWDWVS-GS-PKLSFESGHCNNVFQAKFI----PF--SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAP  230 (559)
T ss_pred             ccCccceEEeehhhc-cC-cccccccccccchhhhhcc----CC--CCCcCceeccccCceeeeeeccccceecceeccc
Confidence            589999999999998 53 2333445899999999998    43  556789999999999998776544433  22334


Q ss_pred             cccceeeeEeeecCC-eEEecCCceeEEEEE-----------ecccccc---ceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           79 YRKEVISLASYIEGP-VLVAGSSSYQVSVES-----------LLIGHED---WVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~-----------~~~~h~~---~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      +...+..++.-|+.. .|.+++.+..+.-+.           ....+..   ..+.++..|     .+...      +++
T Consensus       231 h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P-----~nt~~------faV  299 (559)
T KOG1334|consen  231 HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP-----RNTNE------FAV  299 (559)
T ss_pred             ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC-----CCccc------ccc
Confidence            466677777777543 455555555443221           1222333   467888887     45556      999


Q ss_pred             eecCCeEEEEeccCCCcc----eEEEEEecc-ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------C
Q 048511          144 ASMDKTMMIWQPEKTTGI----WMNVVTVGE-LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------N  211 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~----~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------~  211 (351)
                      ++.|-.+++||.+.....    .+..+.... .......|++++|+.++.-|+++..|-.|++|.-..+.-.       .
T Consensus       300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~  379 (559)
T KOG1334|consen  300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR  379 (559)
T ss_pred             CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch
Confidence            999999999998863222    112222111 1133456999999988888888899999999954322110       0


Q ss_pred             cccccc-cccccc--cEEEEEe-ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511          212 WQPQKV-PSGHFA--AVMDISW-SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG  287 (351)
Q Consensus       212 ~~~~~~-~~~~~~--~v~~v~~-sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (351)
                      ...+.. +++|..  .|.++-| -|...|+++|+.-|.|.||+-.+++          .+.-+.+...-|+|+.-+|  -
T Consensus       380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e----------ii~~MegDr~VVNCLEpHP--~  447 (559)
T KOG1334|consen  380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE----------IIRFMEGDRHVVNCLEPHP--H  447 (559)
T ss_pred             hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH----------HHHHhhcccceEeccCCCC--C
Confidence            022233 677764  4666654 5788999999999999999988776          5555556666899999998  6


Q ss_pred             CcEEEEecCCCeEEEEec
Q 048511          288 NHRFVSGADEKVARVFEA  305 (351)
Q Consensus       288 ~~~l~s~~~dg~v~vw~~  305 (351)
                      --.||+.|-|.-|+||..
T Consensus       448 ~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  448 LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             CchhhccCCccceeeecC
Confidence            789999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=5.4e-13  Score=118.37  Aligned_cols=224  Identities=12%  Similarity=0.037  Sum_probs=143.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..|.+||.+. ...   ..+..+...+.+.+|+        |+|+.|+..+.   +..|.+|++.+++....        
T Consensus       179 ~~l~~~d~dg-~~~---~~lt~~~~~~~~p~wS--------PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------  238 (429)
T PRK03629        179 YELRVSDYDG-YNQ---FVVHRSPQPLMSPAWS--------PDGSKLAYVTFESGRSALVIQTLANGAVRQV--------  238 (429)
T ss_pred             eeEEEEcCCC-CCC---EEeecCCCceeeeEEc--------CCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------
Confidence            4688888876 322   2334466789999999        88998886542   35688899876542211        


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ecCC--eEEEEeccCCC
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SMDK--TMMIWQPEKTT  159 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~d~--~i~iwd~~~~~  159 (351)
                                               ..+.++   +..+.|+      |||+.      |+.. +.++  .|.+||+.+  
T Consensus       239 -------------------------~~~~~~---~~~~~~S------PDG~~------La~~~~~~g~~~I~~~d~~t--  276 (429)
T PRK03629        239 -------------------------ASFPRH---NGAPAFS------PDGSK------LAFALSKTGSLNLYVMDLAS--  276 (429)
T ss_pred             -------------------------cCCCCC---cCCeEEC------CCCCE------EEEEEcCCCCcEEEEEECCC--
Confidence                                     112222   3457899      78887      6654 4444  588899987  


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-Ce--EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      +.... +.     .....+....|+|+|+.|+..+.+ +.  |+++|+.++.      ...+...........|+|+|++
T Consensus       277 g~~~~-lt-----~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~SpDG~~  344 (429)
T PRK03629        277 GQIRQ-VT-----DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA------PQRITWEGSQNQDADVSSDGKF  344 (429)
T ss_pred             CCEEE-cc-----CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC------eEEeecCCCCccCEEECCCCCE
Confidence            44322 21     223456789999999988776654 44  4444555543      2223333344567899999999


Q ss_pred             EEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe---EEEEecCchhh
Q 048511          237 LLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV---ARVFEAPLSFL  310 (351)
Q Consensus       237 l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~---v~vw~~~~~~~  310 (351)
                      |+..+.+   ..|.+||+.++..        ..+...    .......|+|  ||.+|+..+.++.   +.++++++...
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~--------~~Lt~~----~~~~~p~~Sp--DG~~i~~~s~~~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGV--------QVLTDT----FLDETPSIAP--NGTMVIYSSSQGMGSVLNLVSTDGRFK  410 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCe--------EEeCCC----CCCCCceECC--CCCEEEEEEcCCCceEEEEEECCCCCe
Confidence            8776543   3588899877651        222211    1234678999  9999998887763   77888888877


Q ss_pred             hceeecc
Q 048511          311 KTLNHAT  317 (351)
Q Consensus       311 ~~~~~~~  317 (351)
                      +.+..+.
T Consensus       411 ~~l~~~~  417 (429)
T PRK03629        411 ARLPATD  417 (429)
T ss_pred             EECccCC
Confidence            7776543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.57  E-value=9.3e-13  Score=103.78  Aligned_cols=267  Identities=13%  Similarity=0.092  Sum_probs=176.2

Q ss_pred             CCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeeccc--
Q 048511            4 LDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTY--   79 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--   79 (351)
                      .-|.+.+|++.. .+...+.+++ --++.+..|.|....     .++. .|+-+-.+|.|.++..........+....  
T Consensus        44 R~Gkl~Lys~~d-~~~~~l~~~q~~dts~~~dm~w~~~~-----~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~  117 (339)
T KOG0280|consen   44 RSGKLHLYSLED-MKLSPLDTLQCTDTSTEFDMLWRIRE-----TDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK  117 (339)
T ss_pred             eccceEEEeecc-cccCccceeeeecccccceeeeeecc-----CCccceeeeccccceEEEEeeccceeeeeecccchh
Confidence            357889999887 4443333333 234567888887321     2344 56667788999999876544332221111  


Q ss_pred             ---ccceeeeEeeecCCeEEecCCceeEE----------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           80 ---RKEVISLASYIEGPVLVAGSSSYQVS----------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        80 ---~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                         .....++.|++.+..++++..++.+.          ..+..+.|.-+.+..+|+.     .+.++      +.+|+.
T Consensus       118 ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~-----~~pnl------vytGgD  186 (339)
T KOG0280|consen  118 KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD-----KEPNL------VYTGGD  186 (339)
T ss_pred             hhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc-----CCCce------EEecCC
Confidence               11356777888888888877666553          2336788999999999995     33355      999999


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      |+.+..||++.. +.++..    +...|...|.+|.-+| .+.++++|+.|..|++||.++-.    +++..-. -.+.|
T Consensus       187 D~~l~~~D~R~p-~~~i~~----n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~~~~-v~GGV  256 (339)
T KOG0280|consen  187 DGSLSCWDIRIP-KTFIWH----NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLFKAK-VGGGV  256 (339)
T ss_pred             CceEEEEEecCC-cceeee----cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----CccccCc-cccce
Confidence            999999999942 333332    2236888899998876 57799999999999999999653    4454433 34789


Q ss_pred             EEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CCCeEE-E
Q 048511          226 MDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVAR-V  302 (351)
Q Consensus       226 ~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~-v  302 (351)
                      +.++++|.- ..|+.++.-+-.+|-++......     .-......+.|.+-+..-.|..  ....|++++ .|..++ +
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~~~~~~s~~~hdSl~YG~DWd~--~~~~lATCsFYDk~~~~~  329 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE-----FQIVLPSDKIHDSLCYGGDWDS--KDSFLATCSFYDKKIRQL  329 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcCceEEEecccccc-----hheeeeccccccceeecccccc--ccceeeeeeccccceeee
Confidence            999999943 23333445555677777666521     1113344556766677777755  456788876 566655 6


Q ss_pred             Ee
Q 048511          303 FE  304 (351)
Q Consensus       303 w~  304 (351)
                      |-
T Consensus       330 Wl  331 (339)
T KOG0280|consen  330 WL  331 (339)
T ss_pred             ee
Confidence            64

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=8.8e-13  Score=117.50  Aligned_cols=221  Identities=14%  Similarity=0.041  Sum_probs=140.8

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..|.+||.+. ..   ...+..|...+.+.+|+        |+++.|+..+.+   ..|.+||+.++....         
T Consensus       184 ~~l~i~D~~g-~~---~~~lt~~~~~v~~p~wS--------pDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------  242 (433)
T PRK04922        184 YALQVADSDG-YN---PQTILRSAEPILSPAWS--------PDGKKLAYVSFERGRSAIYVQDLATGQREL---------  242 (433)
T ss_pred             EEEEEECCCC-CC---ceEeecCCCccccccCC--------CCCCEEEEEecCCCCcEEEEEECCCCCEEE---------
Confidence            4688899876 32   23455577789999999        889999887643   469999997654321         


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCCC
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKTT  159 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~~  159 (351)
                                                 +........++.|+      +|++.      |+ +.+.++  .|.+||+.+  
T Consensus       243 ---------------------------l~~~~g~~~~~~~S------pDG~~------l~~~~s~~g~~~Iy~~d~~~--  281 (433)
T PRK04922        243 ---------------------------VASFRGINGAPSFS------PDGRR------LALTLSRDGNPEIYVMDLGS--  281 (433)
T ss_pred             ---------------------------eccCCCCccCceEC------CCCCE------EEEEEeCCCCceEEEEECCC--
Confidence                                       11122334567899      67876      54 555555  599999987  


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      +... .+.     .+.......+|+|+++.|+..+. ++.  |+++|+.+++.      ..+..+.......+|+|+|++
T Consensus       282 g~~~-~lt-----~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~lt~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        282 RQLT-RLT-----NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ERLTFQGNYNARASVSPDGKK  349 (433)
T ss_pred             CCeE-ECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EEeecCCCCccCEEECCCCCE
Confidence            4432 222     23334467899999998887663 444  66666655431      122222233456899999999


Q ss_pred             EEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhh
Q 048511          237 LLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFL  310 (351)
Q Consensus       237 l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~  310 (351)
                      |+..+.++   .|.+||+.++..        ..+.    +........|+|  |+++|+..+.+   +.+.++++.+...
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~--------~~Lt----~~~~~~~p~~sp--dG~~i~~~s~~~g~~~L~~~~~~g~~~  415 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSV--------RTLT----PGSLDESPSFAP--NGSMVLYATREGGRGVLAAVSTDGRVR  415 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCe--------EECC----CCCCCCCceECC--CCCEEEEEEecCCceEEEEEECCCCce
Confidence            88765433   699999877651        1221    122244678999  89887766643   4677888877655


Q ss_pred             hcee
Q 048511          311 KTLN  314 (351)
Q Consensus       311 ~~~~  314 (351)
                      +.+.
T Consensus       416 ~~l~  419 (433)
T PRK04922        416 QRLV  419 (433)
T ss_pred             EEcc
Confidence            5554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=6.8e-13  Score=113.49  Aligned_cols=167  Identities=10%  Similarity=0.190  Sum_probs=122.4

Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccc-----cceEEE
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSA-----LGFYGG  181 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-----~~i~~i  181 (351)
                      ..+......++++..+      +...+      |++|+.+|.|-.||.+.  ...+..+.... ...+.     ..|+++
T Consensus       169 ~P~~~~~~~lN~v~in------~~hgL------la~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  169 NPFETDSGELNVVSIN------EEHGL------LACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cccccccccceeeeec------Cccce------EEecccCceEEEecchh--hhhheeeecccccCCCccccccCcceEE
Confidence            3455556789999999      45556      89999999999999998  44444443221 11222     249999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCcccccc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      .|+.+|-.+++|..+|.+.|||+++.+    ..+..-.+..-+|..+.|.+.  +..+++. ....++|||-.+++    
T Consensus       235 ~F~d~gL~~aVGts~G~v~iyDLRa~~----pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk----  305 (703)
T KOG2321|consen  235 KFRDDGLHVAVGTSTGSVLIYDLRASK----PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK----  305 (703)
T ss_pred             EecCCceeEEeeccCCcEEEEEcccCC----ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC----
Confidence            999999999999999999999999974    222233334557889999875  4456654 45789999998887    


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                            ...... ....++.+++.|  ++.+++++-+++.+..|=++
T Consensus       306 ------~~asiE-pt~~lND~C~~p--~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  306 ------PMASIE-PTSDLNDFCFVP--GSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ------ceeecc-ccCCcCceeeec--CCceEEEecCCCcceeEEcc
Confidence                  333332 334589999999  89999999999988877654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=3.2e-13  Score=122.86  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=119.2

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      +++|+.-+.|.+|+....+ ... .     ..+|.+.|.++.++.+|+++++.+.|.++++|++++.+    ......-+
T Consensus       148 i~~gsv~~~iivW~~~~dn-~p~-~-----l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~----~~~~~~fg  216 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDN-KPI-R-----LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE----VLGCTGFG  216 (967)
T ss_pred             EEeccccccEEEEeccccC-Ccc-e-----ecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc----ccCccccc
Confidence            9999999999999998422 222 2     34899999999999999999999999999999999975    33446678


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEecCCCe
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      |...|+.++|.|+  .++|++.|.+.++|+.....           +..+..|. ..|+.++..+  +...+++++.|+.
T Consensus       217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-----------l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  217 HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-----------LEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDST  281 (967)
T ss_pred             ccceeEEEEeccc--eeEEeccceEEEEEecccce-----------ehhhhhhhhcceeEEEEcC--CceEEEeeccCcc
Confidence            9999999999999  89999999999999664432           33555554 4499999998  8889999999999


Q ss_pred             EEEEecCchhhh
Q 048511          300 ARVFEAPLSFLK  311 (351)
Q Consensus       300 v~vw~~~~~~~~  311 (351)
                      +++|++.+....
T Consensus       282 lk~~~l~~r~~e  293 (967)
T KOG0974|consen  282 LKLWDLNGRGLE  293 (967)
T ss_pred             hhhhhhhccccc
Confidence            999998754433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.6e-12  Score=114.67  Aligned_cols=220  Identities=12%  Similarity=0.085  Sum_probs=143.0

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..|.+||.+. ..   ...+..|...+.+.+|+        |+|+.|+..+.   +..|.+||+.++....         
T Consensus       182 ~~l~~~d~dg-~~---~~~lt~~~~~v~~p~wS--------pDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------  240 (435)
T PRK05137        182 KRLAIMDQDG-AN---VRYLTDGSSLVLTPRFS--------PNRQEITYMSYANGRPRVYLLDLETGQREL---------  240 (435)
T ss_pred             eEEEEECCCC-CC---cEEEecCCCCeEeeEEC--------CCCCEEEEEEecCCCCEEEEEECCCCcEEE---------
Confidence            4788888866 32   33455678899999999        88998887764   4679999997764321         


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCe--EEEEeccCCC
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKT--MMIWQPEKTT  159 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~  159 (351)
                                                 +..+.+.+....|+      |||+.      |+ +.+.++.  |.+||+..  
T Consensus       241 ---------------------------l~~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~d~~~--  279 (435)
T PRK05137        241 ---------------------------VGNFPGMTFAPRFS------PDGRK------VVMSLSQGGNTDIYTMDLRS--  279 (435)
T ss_pred             ---------------------------eecCCCcccCcEEC------CCCCE------EEEEEecCCCceEEEEECCC--
Confidence                                       12234456778999      78876      54 5555655  66778776  


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      +... .+.     .+........|+|+|+.|+..+. +|  .|+++|+.++.      ...+..+...+....|+|+|++
T Consensus       280 ~~~~-~Lt-----~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~------~~~lt~~~~~~~~~~~SpdG~~  347 (435)
T PRK05137        280 GTTT-RLT-----DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN------PRRISFGGGRYSTPVWSPRGDL  347 (435)
T ss_pred             CceE-Ecc-----CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC------eEEeecCCCcccCeEECCCCCE
Confidence            4332 222     33344567899999998887663 33  68888877653      2233323445667889999999


Q ss_pred             EEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC------CeEEEEecCc
Q 048511          237 LLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE------KVARVFEAPL  307 (351)
Q Consensus       237 l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~v~vw~~~~  307 (351)
                      |+..+.+   ..|.+||+..+..        ..+.    ....+....|+|  |++.|+..+.+      ..+.++++.+
T Consensus       348 ia~~~~~~~~~~i~~~d~~~~~~--------~~lt----~~~~~~~p~~sp--DG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        348 IAFTKQGGGQFSIGVMKPDGSGE--------RILT----SGFLVEGPTWAP--NGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             EEEEEcCCCceEEEEEECCCCce--------Eecc----CCCCCCCCeECC--CCCEEEEEEccCCCCCcceEEEEECCC
Confidence            8876543   3688888754431        1221    122367789999  88887765432      3577778776


Q ss_pred             hhhhce
Q 048511          308 SFLKTL  313 (351)
Q Consensus       308 ~~~~~~  313 (351)
                      ...+.+
T Consensus       414 ~~~~~l  419 (435)
T PRK05137        414 RNEREV  419 (435)
T ss_pred             CceEEc
Confidence            544444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.5e-12  Score=113.35  Aligned_cols=223  Identities=16%  Similarity=0.099  Sum_probs=136.8

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..|.++|.+. .   ....+..+...+.+.+|+        |+++.|+..+.+   ..|.+||+.+++...         
T Consensus       176 ~~L~~~D~dG-~---~~~~l~~~~~~v~~p~wS--------PDG~~la~~s~~~~~~~I~~~dl~~g~~~~---------  234 (427)
T PRK02889        176 YQLQISDADG-Q---NAQSALSSPEPIISPAWS--------PDGTKLAYVSFESKKPVVYVHDLATGRRRV---------  234 (427)
T ss_pred             cEEEEECCCC-C---CceEeccCCCCcccceEc--------CCCCEEEEEEccCCCcEEEEEECCCCCEEE---------
Confidence            4566677654 2   223444677889999999        889998877643   359999998764321         


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCeEEEEeccCCCcc
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~  161 (351)
                                                 +....+.+....|+      ||++.      |+ +.+.++...||.+....+.
T Consensus       235 ---------------------------l~~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~d~~~~~  275 (427)
T PRK02889        235 ---------------------------VANFKGSNSAPAWS------PDGRT------LAVALSRDGNSQIYTVNADGSG  275 (427)
T ss_pred             ---------------------------eecCCCCccceEEC------CCCCE------EEEEEccCCCceEEEEECCCCC
Confidence                                       11122345578999      78876      65 5677888777766432132


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcc--cCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNV--GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL  238 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  238 (351)
                       ...+.     .+........|+|||+.|+..+. ++...+|.+.  ++.      ...+...........|+|+|++|+
T Consensus       276 -~~~lt-----~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~------~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        276 -LRRLT-----QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA------AQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             -cEECC-----CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc------eEEEecCCCCcCceEECCCCCEEE
Confidence             22222     23334566789999998876554 4666666654  332      111111222344678999999998


Q ss_pred             EEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhc
Q 048511          239 SVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKT  312 (351)
Q Consensus       239 s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~  312 (351)
                      ..+.++   .|.+||+.++..        +.+..    ........|+|  |++.|+..+.++   .+.+.++.+...+.
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~--------~~lt~----~~~~~~p~~sp--dg~~l~~~~~~~g~~~l~~~~~~g~~~~~  409 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQV--------TALTD----TTRDESPSFAP--NGRYILYATQQGGRSVLAAVSSDGRIKQR  409 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCe--------EEccC----CCCccCceECC--CCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence            776554   699999977651        12211    12245779999  888887766443   35555565655544


Q ss_pred             ee
Q 048511          313 LN  314 (351)
Q Consensus       313 ~~  314 (351)
                      +.
T Consensus       410 l~  411 (427)
T PRK02889        410 LS  411 (427)
T ss_pred             ee
Confidence            43

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=2.1e-10  Score=99.06  Aligned_cols=270  Identities=14%  Similarity=0.121  Sum_probs=167.0

Q ss_pred             CceEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----CCcEEEEecCCC-cccceeec
Q 048511            5 DNKIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----DKVIRIWKLALR-GSSANTQS   77 (351)
Q Consensus         5 dg~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----dg~i~iwd~~~~-~~~~~~~~   77 (351)
                      .+.|++|++  ++ +++..+.... -......|+++        +++++|+++..    ++.|..|++... ..+..+..
T Consensus        12 ~~gI~~~~~d~~~-g~l~~~~~~~-~~~~Ps~l~~~--------~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen   12 GGGIYVFRFDEET-GTLTLVQTVA-EGENPSWLAVS--------PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             STEEEEEEEETTT-TEEEEEEEEE-ESSSECCEEE---------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             CCcEEEEEEcCCC-CCceEeeeec-CCCCCceEEEE--------eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            378999988  44 7776666544 34556778999        78889988866    578999998875 33322222


Q ss_pred             c--cccceeeeEeeecCCeEEecCC-ceeEEEEEe-----------cc-----------ccccceEEEEecCCCCCCCCC
Q 048511           78 T--YRKEVISLASYIEGPVLVAGSS-SYQVSVESL-----------LI-----------GHEDWVYSVQWEPPSTAPSDG  132 (351)
Q Consensus        78 ~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-----------~~-----------~h~~~v~~l~~~p~~~~~~~~  132 (351)
                      .  .......++.+++++.++++.. .+.+.++..           ..           .......++.++      |++
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~------pdg  155 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS------PDG  155 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-------TTS
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC------CCC
Confidence            1  3456678889999998888542 222221111           11           112346788999      788


Q ss_pred             cccCCCceeEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcc--cCc
Q 048511          133 VSCQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNV--GVD  208 (351)
Q Consensus       133 ~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~--~~~  208 (351)
                      ++      +++.. ....|.+|++....+.......+ .. ......+.++|+|+++++++.. .++.|.+|++.  .+.
T Consensus       156 ~~------v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~  227 (345)
T PF10282_consen  156 RF------VYVPDLGADRVYVYDIDDDTGKLTPVDSI-KV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS  227 (345)
T ss_dssp             SE------EEEEETTTTEEEEEEE-TTS-TEEEEEEE-EC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred             CE------EEEEecCCCEEEEEEEeCCCceEEEeecc-cc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence            87      66543 34579999998744333221111 11 3345678999999999887665 56899999998  332


Q ss_pred             ccCccccccccc---ccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          209 IDNWQPQKVPSG---HFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       209 ~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ....+.+..+..   .......|.++|||++|+++. ....|.+|++.....      .+..+......+...+.++++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g------~l~~~~~~~~~G~~Pr~~~~s~  301 (345)
T PF10282_consen  228 LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG------TLTLVQTVPTGGKFPRHFAFSP  301 (345)
T ss_dssp             EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT------TEEEEEEEEESSSSEEEEEE-T
T ss_pred             eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC------ceEEEEEEeCCCCCccEEEEeC
Confidence            111111222211   112578899999999987655 467899999943321      2233433333445589999999


Q ss_pred             eCCCcEEEEec-CCCeEEEEecC
Q 048511          285 GKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       285 ~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                        ++++|+++. .++.|.+|+++
T Consensus       302 --~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  302 --DGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             --TSSEEEEEETTTTEEEEEEEE
T ss_pred             --CCCEEEEEecCCCeEEEEEEe
Confidence              888887665 77899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=5.2e-14  Score=117.22  Aligned_cols=187  Identities=9%  Similarity=0.060  Sum_probs=155.6

Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      -....+.++.+|+.++.+++.+.+........       -...|.++.|.      .+.++      ||++ ....+.||
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L------Hneq~------~AVA-QK~y~yvY  196 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL------HNEQF------FAVA-QKKYVYVY  196 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh------cchHH------HHhh-hhceEEEe
Confidence            35678889999999999999988755443222       13468889998      66666      6665 67789999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      |-.   |..++.++      ....+..+.|-|..-+|++++..|.++.-|+.++     +.+..+....+.+..++-+|-
T Consensus       197 D~~---GtElHClk------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-----klVa~~~t~~G~~~vm~qNP~  262 (545)
T KOG1272|consen  197 DNN---GTELHCLK------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-----KLVASIRTGAGRTDVMKQNPY  262 (545)
T ss_pred             cCC---CcEEeehh------hcCchhhhcccchhheeeecccCCceEEEeechh-----hhhHHHHccCCccchhhcCCc
Confidence            976   55555554      2346889999999989999999999999999998     568888878888999999998


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ...+-+|...|+|.+|......          ++..+..|.++|.++++.+  +|+++||.+.|..++|||+.
T Consensus       263 NaVih~GhsnGtVSlWSP~ske----------PLvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  263 NAVIHLGHSNGTVSLWSPNSKE----------PLVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             cceEEEcCCCceEEecCCCCcc----------hHHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeec
Confidence            8889999999999999998776          7777789999999999999  99999999999999999987

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=3.7e-12  Score=100.01  Aligned_cols=112  Identities=21%  Similarity=0.417  Sum_probs=84.4

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEE--eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILS--ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL  191 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  191 (351)
                      .++|.+++|+      |+++.      |++  |..++.|.+||++   +..+..+.       ...+..+.|+|+|++++
T Consensus        59 ~~~I~~~~Ws------P~g~~------favi~g~~~~~v~lyd~~---~~~i~~~~-------~~~~n~i~wsP~G~~l~  116 (194)
T PF08662_consen   59 EGPIHDVAWS------PNGNE------FAVIYGSMPAKVTLYDVK---GKKIFSFG-------TQPRNTISWSPDGRFLV  116 (194)
T ss_pred             CCceEEEEEC------cCCCE------EEEEEccCCcccEEEcCc---ccEeEeec-------CCCceEEEECCCCCEEE
Confidence            4579999999      56666      554  4467899999996   33333332       34677899999999999


Q ss_pred             EEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC------CCcEEEEcCCCc
Q 048511          192 AHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH------DQTTRVFAPWKN  254 (351)
Q Consensus       192 ~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~------dg~i~vwd~~~~  254 (351)
                      +++.+   |.|.+||.++.     +.+.... |. .++.++|+|+|++|+++..      |+.++||++...
T Consensus       117 ~~g~~n~~G~l~~wd~~~~-----~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  117 LAGFGNLNGDLEFWDVRKK-----KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEccCCCcEEEEEECCCC-----EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            98754   67999999975     4455544 33 4789999999999998864      788999998543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=6.4e-11  Score=96.52  Aligned_cols=269  Identities=12%  Similarity=0.115  Sum_probs=174.3

Q ss_pred             CceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCC--cccc-eeec
Q 048511            5 DNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALR--GSSA-NTQS   77 (351)
Q Consensus         5 dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~--~~~~-~~~~   77 (351)
                      +.-|++|++++ .+++.. ..+-.+.+.++-|+|+        +++++|.++-.   +|.|..|.++..  .... ....
T Consensus        15 s~gI~v~~ld~~~g~l~~-~~~v~~~~nptyl~~~--------~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~   85 (346)
T COG2706          15 SQGIYVFNLDTKTGELSL-LQLVAELGNPTYLAVN--------PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT   85 (346)
T ss_pred             CCceEEEEEeCcccccch-hhhccccCCCceEEEC--------CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence            56799999884 244333 3344578889999999        88989998854   577888888753  3221 1112


Q ss_pred             ccccceeeeEeeecCCeEEecCCc------------eeEEEEEeccccccc----------eEEEEecCCCCCCCCCccc
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSS------------YQVSVESLLIGHEDW----------VYSVQWEPPSTAPSDGVSC  135 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~~~~~~~  135 (351)
                      ....+...++.+++|++++++.-.            +.+........|.+.          +....+.      |++++ 
T Consensus        86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t------P~~~~-  158 (346)
T COG2706          86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT------PDGRY-  158 (346)
T ss_pred             cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC------CCCCE-
Confidence            223445888999999998886422            222111112224444          6777788      78887 


Q ss_pred             CCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccC--cccC
Q 048511          136 QQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGV--DIDN  211 (351)
Q Consensus       136 ~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~--~~~~  211 (351)
                           |++..- --.|.+|++..  +.....-.. .. .....-+.|.|+|++++.++.+ -+++|.+|..+..  +...
T Consensus       159 -----l~v~DLG~Dri~~y~~~d--g~L~~~~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~  229 (346)
T COG2706         159 -----LVVPDLGTDRIFLYDLDD--GKLTPADPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE  229 (346)
T ss_pred             -----EEEeecCCceEEEEEccc--Ccccccccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence                 777643 22589999996  443322111 11 3445678999999999887665 5899999998773  3222


Q ss_pred             ccccccccc---ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511          212 WQPQKVPSG---HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG  287 (351)
Q Consensus       212 ~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (351)
                      .+.+.++..   -.....+|..+|||++|.++.. ...|.+|.+.....      .+..+.....++...+.+.|++  +
T Consensus       230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g------~L~~~~~~~teg~~PR~F~i~~--~  301 (346)
T COG2706         230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG------KLELVGITPTEGQFPRDFNINP--S  301 (346)
T ss_pred             eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC------EEEEEEEeccCCcCCccceeCC--C
Confidence            233333221   2345678999999999987643 45888888865542      2334444445666678999999  7


Q ss_pred             CcEEEEecC-CCeEEEEecC
Q 048511          288 NHRFVSGAD-EKVARVFEAP  306 (351)
Q Consensus       288 ~~~l~s~~~-dg~v~vw~~~  306 (351)
                      +++|+++.. +..|.+|.++
T Consensus       302 g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         302 GRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCEEEEEccCCCcEEEEEEc
Confidence            888877774 5579999876

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.49  E-value=2.6e-12  Score=110.44  Aligned_cols=210  Identities=13%  Similarity=0.030  Sum_probs=152.0

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeeccc--ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTY--RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEP  124 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p  124 (351)
                      +...++|....||.+|+|+...++..+++....  .+...+..|.     |.+....             ....++.+- 
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~-------------~k~~~~~~~-   63 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSP-------------MKWLSLEKA-   63 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccch-------------HHHHhHHHH-
Confidence            557899999999999999999877655443221  1222222222     1111111             011111111 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511          125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~  204 (351)
                           ..  .+.+..+++-|...|.|.+|++..  ++....+.   ...|...|.++.++.+-.+|.+++.|..+..|+.
T Consensus        64 -----~~--~s~~t~~lvlgt~~g~v~~ys~~~--g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~  131 (541)
T KOG4547|consen   64 -----KK--ASLDTSMLVLGTPQGSVLLYSVAG--GEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE  131 (541)
T ss_pred             -----hh--ccCCceEEEeecCCccEEEEEecC--CeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEec
Confidence                 00  012223388899999999999998  66665554   3478889999999999999999999999999999


Q ss_pred             ccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ...     ..+.........+.+++.+||+.++++++  +.|++||+++.+          .+..+.+|.++|++++|..
T Consensus       132 ~~~-----~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke----------vv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  132 KEK-----VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE----------VVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             ccc-----eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce----------EEEEecCCCcceEEEEEEE
Confidence            886     45677777778899999999999999887  679999999887          7888899999999999987


Q ss_pred             eCC-----CcEEE-EecCCCeEEEEecC
Q 048511          285 GKG-----NHRFV-SGADEKVARVFEAP  306 (351)
Q Consensus       285 ~~~-----~~~l~-s~~~dg~v~vw~~~  306 (351)
                        +     |.+++ +...+..+.+|-+.
T Consensus       195 --~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  195 --LIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             --eccccccceeeeccccccceeEEEEE
Confidence              4     45554 45567788889865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2e-12  Score=114.97  Aligned_cols=193  Identities=17%  Similarity=0.121  Sum_probs=127.9

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEec--CCCcccceeeccccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKL--ALRGSSANTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~--~~~~~~~~~~~~~~~   81 (351)
                      +..|++||+.+ ++...+..+.+|.   ..++|+        |+++.|+.++ .+|.+.||.+  .++..          
T Consensus       227 ~~~i~i~dl~t-g~~~~l~~~~g~~---~~~~wS--------PDG~~La~~~~~~g~~~Iy~~d~~~~~~----------  284 (429)
T PRK01742        227 KSQLVVHDLRS-GARKVVASFRGHN---GAPAFS--------PDGSRLAFASSKDGVLNIYVMGANGGTP----------  284 (429)
T ss_pred             CcEEEEEeCCC-CceEEEecCCCcc---CceeEC--------CCCCEEEEEEecCCcEEEEEEECCCCCe----------
Confidence            35799999988 7655555565554   468999        8898888764 6887777654  33221          


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCCCc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKTTG  160 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~  160 (351)
                                                ..+..+...+....|+      +|++.      |+.++ .++...||++....+
T Consensus       285 --------------------------~~lt~~~~~~~~~~wS------pDG~~------i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        285 --------------------------SQLTSGAGNNTEPSWS------PDGQS------ILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             --------------------------EeeccCCCCcCCEEEC------CCCCE------EEEEECCCCCceEEEEECCCC
Confidence                                      1123355567789999      78876      66544 578889998765323


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      .. ..+      .+..  ....|+|+|++|+..+.++ +.+||+.++..     ......+  ....+.|+|+|++|+.+
T Consensus       327 ~~-~~l------~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~~--~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        327 GA-SLV------GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-----EVLSSTF--LDESPSISPNGIMIIYS  389 (429)
T ss_pred             Ce-EEe------cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-----EEecCCC--CCCCceECCCCCEEEEE
Confidence            22 111      1111  4578999999998887765 56699987642     1111111  23467899999999999


Q ss_pred             eCCCcEEEEcCCC--ccccccCccceEEeccccccccceeEEEEee
Q 048511          241 SHDQTTRVFAPWK--NVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       241 ~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +.++.+.+|++..  +.          ....+..|...+...+|+|
T Consensus       390 s~~g~~~~l~~~~~~G~----------~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        390 STQGLGKVLQLVSADGR----------FKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             EcCCCceEEEEEECCCC----------ceEEccCCCCCCCCcccCC
Confidence            9999888887643  32          3444456667788899988

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.9e-10  Score=93.52  Aligned_cols=267  Identities=15%  Similarity=0.132  Sum_probs=166.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc------
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA------   73 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~------   73 (351)
                      ++..|-+|++|+-.. .   +...++ .-...|+||+|-    |   -.+..|+.|+..| |.+|.........      
T Consensus       115 va~nddvVriy~kss-t---~pt~Lks~sQrnvtclawR----P---lsaselavgCr~g-IciW~~s~tln~~r~~~~~  182 (445)
T KOG2139|consen  115 VATNDDVVRIYDKSS-T---CPTKLKSVSQRNVTCLAWR----P---LSASELAVGCRAG-ICIWSDSRTLNANRNIRMM  182 (445)
T ss_pred             hhccCcEEEEeccCC-C---CCceecchhhcceeEEEec----c---CCcceeeeeecce-eEEEEcCcccccccccccc
Confidence            367889999999876 3   233333 224589999999    3   3456788888765 8999876433221      


Q ss_pred             ------eeecccccceeeeEeeecCCeEEecC-CceeEEEEEeccc--------cccceEEEEecCCCCCCCCCcccCCC
Q 048511           74 ------NTQSTYRKEVISLASYIEGPVLVAGS-SSYQVSVESLLIG--------HEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        74 ------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~--------h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                            ....+....+.+|.|.+||..++.++ .+..+.+|..-.+        .-+.+.-+.|+      ||+.+    
T Consensus       183 s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS------Pdgd~----  252 (445)
T KOG2139|consen  183 STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS------PDGDV----  252 (445)
T ss_pred             cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc------CCCCE----
Confidence                  12222246788999999999998865 4566677665333        23457789999      79999    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc--------
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID--------  210 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--------  210 (351)
                        |+.+.-|+..++|+...  .-......     -..+.|...+|+|+|+.|+.+.. |.-++|.+.-....        
T Consensus       253 --lfaAt~davfrlw~e~q--~wt~erw~-----lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~  322 (445)
T KOG2139|consen  253 --LFAATCDAVFRLWQENQ--SWTKERWI-----LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS  322 (445)
T ss_pred             --EEEecccceeeeehhcc--cceeccee-----ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence              99999999999997654  22222222     23347999999999997665443 23345554321110        


Q ss_pred             --Ccccccccc-----c----ccccEEEEEeecCCCEEEEEeCCC--------cEEEEcCCCccccccCccceEEecccc
Q 048511          211 --NWQPQKVPS-----G----HFAAVMDISWSRSSDYLLSVSHDQ--------TTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       211 --~~~~~~~~~-----~----~~~~v~~v~~sp~~~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                        ...++..+.     .    -.+++.+++|.|.|.+|++.-..+        .|.+||.+....     ..+.......
T Consensus       323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~-----vels~cg~i~  397 (445)
T KOG2139|consen  323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP-----VELSYCGMIG  397 (445)
T ss_pred             ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc-----eEEEeccccc
Confidence              001111111     1    135688999999999999765433        467787765541     1111112222


Q ss_pred             ccccceeEEEEeee-CCCcEEEEecCCCeEEEEecC
Q 048511          272 VHGHDINCVTIIQG-KGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       272 ~~~~~i~~~~~~~~-~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +.  ....++|.|. .++.+|..+-..|.+.-|.+.
T Consensus       398 ge--~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  398 GE--YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CC--CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            22  2455666653 346666677788888877754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1e-10  Score=101.10  Aligned_cols=235  Identities=11%  Similarity=0.072  Sum_probs=143.6

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+|+|.|.|..+ .  +.+..+......-..+.|+        ++++++++++.||.|.++|+.+.+.+..+..      
T Consensus        14 ~~~~v~viD~~t-~--~~~~~i~~~~~~h~~~~~s--------~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------   76 (369)
T PF02239_consen   14 GSGSVAVIDGAT-N--KVVARIPTGGAPHAGLKFS--------PDGRYLYVANRDGTVSVIDLATGKVVATIKV------   76 (369)
T ss_dssp             GGTEEEEEETTT----SEEEEEE-STTEEEEEE-T--------T-SSEEEEEETTSEEEEEETTSSSEEEEEE-------
T ss_pred             CCCEEEEEECCC-C--eEEEEEcCCCCceeEEEec--------CCCCEEEEEcCCCeEEEEECCcccEEEEEec------
Confidence            578999999988 5  3456666544333446788        8899999999999999999998876544431      


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ecCCeEEEEeccCCCcce
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SMDKTMMIWQPEKTTGIW  162 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~  162 (351)
                                                    .....+++++      +||++      ++++ ..++.+.++|.++  .+.
T Consensus        77 ------------------------------G~~~~~i~~s------~DG~~------~~v~n~~~~~v~v~D~~t--le~  112 (369)
T PF02239_consen   77 ------------------------------GGNPRGIAVS------PDGKY------VYVANYEPGTVSVIDAET--LEP  112 (369)
T ss_dssp             ------------------------------SSEEEEEEE--------TTTE------EEEEEEETTEEEEEETTT----E
T ss_pred             ------------------------------CCCcceEEEc------CCCCE------EEEEecCCCceeEecccc--ccc
Confidence                                          2346789999      78988      7665 4689999999998  777


Q ss_pred             EEEEEeccccc--cccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE
Q 048511          163 MNVVTVGELSH--SALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS  239 (351)
Q Consensus       163 ~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  239 (351)
                      +..+.......  ....+..+..+|....++..-.| +.|.+.|.....    .+...............|+|++++++.
T Consensus       113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----~~~~~~i~~g~~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----NLKVTTIKVGRFPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----CEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred             eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----ccceeeecccccccccccCcccceeee
Confidence            77776543322  34567788888888866666554 888888876642    222222233456778999999998766


Q ss_pred             E-eCCCcEEEEcCCCcccccc---------------------------------------------CccceEEecccccc
Q 048511          240 V-SHDQTTRVFAPWKNVASLM---------------------------------------------GENSWHEVARPQVH  273 (351)
Q Consensus       240 ~-~~dg~i~vwd~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~  273 (351)
                      + ..+..|.++|.++++....                                             ....|+.+..+...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            5 4466788888776643321                                             11223333333333


Q ss_pred             ccceeEEEEeeeCCCcEEEEe----cCCCeEEEEecC
Q 048511          274 GHDINCVTIIQGKGNHRFVSG----ADEKVARVFEAP  306 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~----~~dg~v~vw~~~  306 (351)
                      +.. .-+..+|  ++.++.+.    .+.+.|.|+|..
T Consensus       269 G~g-lFi~thP--~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  269 GGG-LFIKTHP--DSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             SSS---EE--T--T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             CCc-ceeecCC--CCccEEeeccCCCCCceEEEEECc
Confidence            333 4556677  77777776    456889999976

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.43  E-value=4.8e-11  Score=106.42  Aligned_cols=221  Identities=15%  Similarity=0.094  Sum_probs=139.1

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeeccccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ...|.++|... ..   ...+..+...+....|+        +++++|+.++.+   ..|.+||+.++....        
T Consensus       169 ~~~l~~~d~~g-~~---~~~l~~~~~~~~~p~~S--------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------  228 (417)
T TIGR02800       169 RYELQVADYDG-AN---PQTITRSREPILSPAWS--------PDGQKLAYVSFESGKPEIYVQDLATGQREK--------  228 (417)
T ss_pred             cceEEEEcCCC-CC---CEEeecCCCceecccCC--------CCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence            34577788765 32   23444566678899999        889999887654   479999987654221        


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCC
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKT  158 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~  158 (351)
                                                  +..+...+.++.|+      +|++.      |+ +.+.++  .|.+||+.+ 
T Consensus       229 ----------------------------~~~~~~~~~~~~~s------pDg~~------l~~~~~~~~~~~i~~~d~~~-  267 (417)
T TIGR02800       229 ----------------------------VASFPGMNGAPAFS------PDGSK------LAVSLSKDGNPDIYVMDLDG-  267 (417)
T ss_pred             ----------------------------eecCCCCccceEEC------CCCCE------EEEEECCCCCccEEEEECCC-
Confidence                                        11233445668899      67775      54 444444  588888876 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                       +... .+.     .+........|+|+++.|+..+. ++  .|+++|+.+++      ...+..+...+....|+|+++
T Consensus       268 -~~~~-~l~-----~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~~~~~~~~~~~~spdg~  334 (417)
T TIGR02800       268 -KQLT-RLT-----NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLTFRGGYNASPSWSPDGD  334 (417)
T ss_pred             -CCEE-ECC-----CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEeecCCCCccCeEECCCCC
Confidence             4322 121     22233446789999998876654 33  57777776653      223333445667789999999


Q ss_pred             EEEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchh
Q 048511          236 YLLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSF  309 (351)
Q Consensus       236 ~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~  309 (351)
                      +|+.++.++   .|.+||+.++..        ..+..   . ......+|+|  ++++|+..+.++   .+.+.+..++.
T Consensus       335 ~i~~~~~~~~~~~i~~~d~~~~~~--------~~l~~---~-~~~~~p~~sp--dg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       335 LIAFVHREGGGFNIAVMDLDGGGE--------RVLTD---T-GLDESPSFAP--NGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             EEEEEEccCCceEEEEEeCCCCCe--------EEccC---C-CCCCCceECC--CCCEEEEEEeCCCcEEEEEEECCCce
Confidence            998887765   788999876541        12221   1 1234568998  888887766543   46666666655


Q ss_pred             hhce
Q 048511          310 LKTL  313 (351)
Q Consensus       310 ~~~~  313 (351)
                      ...+
T Consensus       401 ~~~~  404 (417)
T TIGR02800       401 RARL  404 (417)
T ss_pred             eeEC
Confidence            4443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1e-11  Score=113.37  Aligned_cols=157  Identities=15%  Similarity=0.159  Sum_probs=120.3

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      ++.+..++.+.+||...  +.....++-.+ ...-....-+-++++.-++++|+.-+.|.+|+.....    .+. .+.+
T Consensus       102 i~l~~~~ns~~i~d~~~--~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~-~l~G  173 (967)
T KOG0974|consen  102 IALVTSRNSLLIRDSKN--SSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----KPI-RLKG  173 (967)
T ss_pred             EEEEEcCceEEEEeccc--CceehhcCCCc-eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----Ccc-eecc
Confidence            88888999999999986  44333332000 0000011223345666789999999999999997432    223 6889


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      |.+.|.++.|+-||+++++.|+|+++|+|++.+.+.         ......+|...++.+.|.|  +  .+++++.|.+.
T Consensus       174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~---------~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctc  240 (967)
T KOG0974|consen  174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV---------LGCTGFGHSARVWACCFLP--N--RIITVGEDCTC  240 (967)
T ss_pred             cCCceEEEEEccCCcEEEEEecCcceeeeecccccc---------cCcccccccceeEEEEecc--c--eeEEeccceEE
Confidence            999999999999999999999999999999998872         2235568999999999998  4  99999999999


Q ss_pred             EEEecCchhhhceeeccc
Q 048511          301 RVFEAPLSFLKTLNHATF  318 (351)
Q Consensus       301 ~vw~~~~~~~~~~~~~~~  318 (351)
                      ++|+.++..+..+.+|.+
T Consensus       241 rvW~~~~~~l~~y~~h~g  258 (967)
T KOG0974|consen  241 RVWGVNGTQLEVYDEHSG  258 (967)
T ss_pred             EEEecccceehhhhhhhh
Confidence            999988888877776654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=6.5e-12  Score=120.34  Aligned_cols=187  Identities=11%  Similarity=0.098  Sum_probs=148.6

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      +.|-..|.++.-+        |...+.+||+.||.|++|....++.+.......+..+..+.|+.+|+.+.+++.++.+.
T Consensus      2205 k~~v~~v~r~~sH--------p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSH--------PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             ecccCceeeecCC--------CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence            3445567777766        67889999999999999999988887777666667888999999999999999888887


Q ss_pred             EEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          106 VESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       106 ~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +++.       .+.|......+.|.      .  ..      +++++   .++.+.+||.-.........      ..|.
T Consensus      2277 l~q~~pk~~~s~qchnk~~~Df~Fi------~--s~------~~tag~s~d~~n~~lwDtl~~~~~s~v~------~~H~ 2336 (2439)
T KOG1064|consen 2277 LWQASPKPYTSWQCHNKALSDFRFI------G--SL------LATAGRSSDNRNVCLWDTLLPPMNSLVH------TCHD 2336 (2439)
T ss_pred             ecccCCcceeccccCCccccceeee------e--hh------hhccccCCCCCcccchhcccCcccceee------eecC
Confidence            6653       56788888888887      3  44      67665   47889999976532332222      2788


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..++++++.|..+.|++|+.+|.|++||++..     ++++.++.         +. ...+|++++..|.++||++....
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqr-----ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQR-----QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHH-----HHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence            89999999999999999999999999999886     44555543         44 56789999999999999997664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=1.1e-12  Score=112.06  Aligned_cols=216  Identities=16%  Similarity=0.269  Sum_probs=142.0

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ..+..+.||...|..++-.        .+.+-+++++.|++|++|.++....-..                         
T Consensus       726 irL~nf~GH~~~iRai~Ai--------dNENSFiSASkDKTVKLWSik~EgD~~~-------------------------  772 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAI--------DNENSFISASKDKTVKLWSIKPEGDEIG-------------------------  772 (1034)
T ss_pred             eeeecccCcHHHhHHHHhc--------ccccceeeccCCceEEEEEeccccCccc-------------------------
Confidence            4567788999999999877        6788899999999999999975432111                         


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                         .-.+.-+++.|+.+|.++.|.      .+-+.      +++  -|+.|++||.-.  +..+..+.-....+....|.
T Consensus       773 ---tsaCQfTY~aHkk~i~~igfL------~~lr~------i~S--cD~giHlWDPFi--gr~Laq~~dapk~~a~~~ik  833 (1034)
T KOG4190|consen  773 ---TSACQFTYQAHKKPIHDIGFL------ADLRS------IAS--CDGGIHLWDPFI--GRLLAQMEDAPKEGAGGNIK  833 (1034)
T ss_pred             ---cceeeeEhhhccCcccceeee------eccce------eee--ccCcceeecccc--cchhHhhhcCcccCCCceeE
Confidence               112345678899999999999      66655      655  488899999876  54444332211122223344


Q ss_pred             EEEEcCCCCEEEE-EeeCCeEEEEEcccCcccCcccc---cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          180 GGHWSPDGRSILA-HGYGGAFHLWRNVGVDIDNWQPQ---KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       180 ~i~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |+. +-+...++. ++...+|+++|.+..+   |.+.   ..-.+....+++++..+.|++++.+-.+|.|.+.|.++++
T Consensus       834 cl~-nv~~~iliAgcsaeSTVKl~DaRsce---~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  834 CLE-NVDRHILIAGCSAESTVKLFDARSCE---WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             ecc-cCcchheeeeccchhhheeeeccccc---ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            443 223344444 4678999999998764   2222   2223445678999999999999999999999999999997


Q ss_pred             ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE-Ee
Q 048511          256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV-FE  304 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v-w~  304 (351)
                      .    ...|++..      -.+..++- |  ..+.++....|..+.| |.
T Consensus       910 v----INswrpme------cdllqlaa-p--sdq~L~~saldHslaVnWh  946 (1034)
T KOG4190|consen  910 V----INSWRPME------CDLLQLAA-P--SDQALAQSALDHSLAVNWH  946 (1034)
T ss_pred             e----eccCCccc------chhhhhcC-c--hhHHHHhhcccceeEeeeh
Confidence            3    22344322      22222221 2  3455555556666666 54

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=4.8e-09  Score=90.71  Aligned_cols=227  Identities=12%  Similarity=0.096  Sum_probs=145.7

Q ss_pred             CCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceee-----
Q 048511            4 LDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQ-----   76 (351)
Q Consensus         4 ~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~-----   76 (351)
                      .+|.|..|++..+ +++..+............++++        +++++|+++.. +|.|.++++.....+....     
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~--------~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~  131 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD--------PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH  131 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC--------TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe--------cCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence            5788999998875 6777777666445566789999        88999998874 8999999998753332221     


Q ss_pred             --------cccccceeeeEeeecCCeEEecCCc-eeEEEEEe------------cc-ccccceEEEEecCCCCCCCCCcc
Q 048511           77 --------STYRKEVISLASYIEGPVLVAGSSS-YQVSVESL------------LI-GHEDWVYSVQWEPPSTAPSDGVS  134 (351)
Q Consensus        77 --------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~------------~~-~h~~~v~~l~~~p~~~~~~~~~~  134 (351)
                              ........++.++|+++++++.+.. ..+.....            +. .....-..+.|+      +++++
T Consensus       132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~------pdg~~  205 (345)
T PF10282_consen  132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS------PDGKY  205 (345)
T ss_dssp             EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-------TTSSE
T ss_pred             CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc------CCcCE
Confidence                    1123456688999999988874321 12222111            11 122346788999      67776


Q ss_pred             cCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc--c-cccceEEEEEcCCCCEEEEEee-CCeEEEEEccc--Cc
Q 048511          135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS--H-SALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVG--VD  208 (351)
Q Consensus       135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~--~~  208 (351)
                           +.++.-.++.|.++++....+.......+....  . .......|+++|++++|+++.. .+.|.+|+++.  +.
T Consensus       206 -----~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  206 -----AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             -----EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             -----EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence                 145556688999999994334433322222211  1 1125778999999999888774 58899999943  22


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCC
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPW  252 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~  252 (351)
                      .   +.+..+.......+.+.++|+|++|+++. .++.|.+|++.
T Consensus       281 l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  281 L---TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             E---EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             e---EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            1   33333333344589999999999998776 46789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.36  E-value=1.2e-11  Score=97.66  Aligned_cols=188  Identities=14%  Similarity=0.111  Sum_probs=129.7

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+|.+.+-+... ..++.++.+++|.-+.+...|+    .   .+.++++|||.|+.+..||++-...            
T Consensus       141 s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~----~---~~pnlvytGgDD~~l~~~D~R~p~~------------  200 (339)
T KOG0280|consen  141 SRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFS----D---KEPNLVYTGGDDGSLSCWDIRIPKT------------  200 (339)
T ss_pred             CCCcEEEEecce-eeeeecccccccceeeeeeecc----c---CCCceEEecCCCceEEEEEecCCcc------------
Confidence            456666444444 4556677899999999999998    2   3457999999999999999984331            


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                           .+++..+.|...|.++.-+|     +.+.+      +++|+.|-.|++||.+.. ++++
T Consensus       201 ---------------------~i~~n~kvH~~GV~SI~ss~-----~~~~~------I~TGsYDe~i~~~DtRnm-~kPl  247 (339)
T KOG0280|consen  201 ---------------------FIWHNSKVHTSGVVSIYSSP-----PKPTY------IATGSYDECIRVLDTRNM-GKPL  247 (339)
T ss_pred             ---------------------eeeecceeeecceEEEecCC-----CCCce------EEEeccccceeeeehhcc-cCcc
Confidence                                 12344566899999999998     77778      999999999999999963 3333


Q ss_pred             EEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      ..-      ...+.|+.+.++|.-  ..|+++-.+| .+|-+...+....-......+.|.+-+..-.|..-...|+|++
T Consensus       248 ~~~------~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  248 FKA------KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             ccC------ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence            322      234789999999953  3445444444 6777776654321123445566777777777755445688876


Q ss_pred             -CCCcEE-EEcC
Q 048511          242 -HDQTTR-VFAP  251 (351)
Q Consensus       242 -~dg~i~-vwd~  251 (351)
                       .|+.++ +|-.
T Consensus       321 FYDk~~~~~Wl~  332 (339)
T KOG0280|consen  321 FYDKKIRQLWLH  332 (339)
T ss_pred             ccccceeeeeee
Confidence             366644 6643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=3.4e-10  Score=97.07  Aligned_cols=251  Identities=12%  Similarity=0.113  Sum_probs=154.9

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL   86 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   86 (351)
                      .+++|++++ +  .....++.-...-++..|+        .+..+.|-- ..+.+.+|++...+......  +...+..+
T Consensus       106 n~~v~~vet-~--~~~s~~q~k~Q~~W~~qfs--------~dEsl~arl-v~nev~f~~~~~f~~~~~kl--~~~~i~~f  171 (566)
T KOG2315|consen  106 NVLVYNVET-G--VQRSQIQKKMQNGWVPQFS--------IDESLAARL-VSNEVQFYDLGSFKTIQHKL--SVSGITML  171 (566)
T ss_pred             ceeeeeecc-c--eehhheehhhhcCcccccc--------cchhhhhhh-hcceEEEEecCCccceeeee--eccceeeE
Confidence            477999988 6  2333333222222688898        555443322 24569999998744332222  23456666


Q ss_pred             EeeecC--CeEEe-----cCCceeEEEEEecc--ccc---------cceEEEEecCCCCCCCCCcccCCCceeEEeecC-
Q 048511           87 ASYIEG--PVLVA-----GSSSYQVSVESLLI--GHE---------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-  147 (351)
Q Consensus        87 ~~~~~~--~~l~~-----~~~~~~~~~~~~~~--~h~---------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-  147 (351)
                      .++|.+  ..+++     ++....++++..-.  .|.         ..=..+.|++      -+.-   -.+|++..-| 
T Consensus       172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~------~gt~---LLvLastdVDk  242 (566)
T KOG2315|consen  172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNK------LGTA---LLVLASTDVDK  242 (566)
T ss_pred             EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEecc------CCce---EEEEEEEeecC
Confidence            666653  34443     23334444443221  111         1122456663      2221   0112233223 


Q ss_pred             --------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccc
Q 048511          148 --------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       148 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                              .++++.+++.  ......+      ...++|.++.|+|+++.++++.  .--.+.|||++..      ++..
T Consensus       243 tn~SYYGEq~Lyll~t~g--~s~~V~L------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~d  308 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQG--ESVSVPL------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFD  308 (566)
T ss_pred             CCccccccceEEEEEecC--ceEEEec------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEe
Confidence                    3577777763  2222222      3578999999999998766543  5678999999883      4555


Q ss_pred             cccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      +  .+++=+++-|+|.|++|+.++-   -|.|.|||+.+.+          .+.++....  -+-+.|+|  ||++|+++
T Consensus       309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----------~i~~~~a~~--tt~~eW~P--dGe~flTA  372 (566)
T KOG2315|consen  309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----------LIAKFKAAN--TTVFEWSP--DGEYFLTA  372 (566)
T ss_pred             C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----------hccccccCC--ceEEEEcC--CCcEEEEE
Confidence            5  3556678999999999988775   4899999998866          666665554  45689999  99999988


Q ss_pred             cC------CCeEEEEecCchhh
Q 048511          295 AD------EKVARVFEAPLSFL  310 (351)
Q Consensus       295 ~~------dg~v~vw~~~~~~~  310 (351)
                      ..      |..++||+..|..+
T Consensus       373 TTaPRlrvdNg~KiwhytG~~l  394 (566)
T KOG2315|consen  373 TTAPRLRVDNGIKIWHYTGSLL  394 (566)
T ss_pred             eccccEEecCCeEEEEecCcee
Confidence            73      67899999887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.1e-10  Score=104.22  Aligned_cols=163  Identities=14%  Similarity=0.146  Sum_probs=105.6

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .+...+.+.+|+      ||++.      |+..+.   ...|.+||+..  +.... +.     ..........|+|+|+
T Consensus       201 ~~~~~v~~p~wS------pDg~~------la~~s~~~~~~~l~~~dl~~--g~~~~-l~-----~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        201 RSAEPILSPAWS------PDGKK------LAYVSFERGRSAIYVQDLAT--GQREL-VA-----SFRGINGAPSFSPDGR  260 (433)
T ss_pred             cCCCccccccCC------CCCCE------EEEEecCCCCcEEEEEECCC--CCEEE-ec-----cCCCCccCceECCCCC
Confidence            456678899999      78888      887764   34699999987  43322 11     1223345789999999


Q ss_pred             EEEE-EeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCccccccCcc
Q 048511          189 SILA-HGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNVASLMGEN  262 (351)
Q Consensus       189 ~l~~-~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~  262 (351)
                      .|+. .+.++  .|++||+.+++      ...+..+.......+|+|||++|+..+. ++.  |+++|+..+..      
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------  328 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQ------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------  328 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------
Confidence            7754 44454  69999998764      2334445445567899999998887664 444  66666655431      


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhce
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKTL  313 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~  313 (351)
                        +.+.   .++......+|+|  ++++|+..+.++   .|.+|++.+.....+
T Consensus       329 --~~lt---~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        329 --ERLT---FQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             --EEee---cCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence              1222   1223345689999  888887654332   699999874433333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=4.7e-10  Score=100.21  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=109.2

Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      ..|...+.+..|+      ||++.      |+..+.   +..|.+||+.+  +... .+.     .....+...+|+|+|
T Consensus       198 t~~~~~v~~p~wS------pDG~~------lay~s~~~g~~~i~~~dl~~--g~~~-~l~-----~~~g~~~~~~~SPDG  257 (435)
T PRK05137        198 TDGSSLVLTPRFS------PNRQE------ITYMSYANGRPRVYLLDLET--GQRE-LVG-----NFPGMTFAPRFSPDG  257 (435)
T ss_pred             ecCCCCeEeeEEC------CCCCE------EEEEEecCCCCEEEEEECCC--CcEE-Eee-----cCCCcccCcEECCCC
Confidence            4567789999999      78887      877764   46899999987  4432 222     234456788999999


Q ss_pred             CEEE-EEeeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCc
Q 048511          188 RSIL-AHGYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGE  261 (351)
Q Consensus       188 ~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~  261 (351)
                      +.|+ +.+.++.  |++||+.++.      ...+..+........|+|||+.|+..+. ++  .|+++|+..+..     
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----  326 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGT------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----  326 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCc------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----
Confidence            9775 4455554  7777887753      3344445556677899999998887664 33  688888765541     


Q ss_pred             cceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhhc
Q 048511          262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLKT  312 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~  312 (351)
                         +.+.   .+...+....|+|  +++.|+..+.+   ..|.+|++.+...+.
T Consensus       327 ---~~lt---~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~  372 (435)
T PRK05137        327 ---RRIS---FGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGERI  372 (435)
T ss_pred             ---EEee---cCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence               1222   1233456788999  88888776533   468888876544333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.1e-10  Score=101.91  Aligned_cols=194  Identities=11%  Similarity=0.026  Sum_probs=122.1

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEe-eCCC--cEEEEecCCCcccceeeccccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSS-SQDK--VIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~-~~dg--~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +..|++|++.+ ++...+..+.+|   +....|+        |+|+.|+.. +.+|  .|.+||+.++....        
T Consensus       222 ~~~i~i~dl~~-G~~~~l~~~~~~---~~~~~~S--------PDG~~La~~~~~~g~~~I~~~d~~tg~~~~--------  281 (429)
T PRK03629        222 RSALVIQTLAN-GAVRQVASFPRH---NGAPAFS--------PDGSKLAFALSKTGSLNLYVMDLASGQIRQ--------  281 (429)
T ss_pred             CcEEEEEECCC-CCeEEccCCCCC---cCCeEEC--------CCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------
Confidence            45788999887 765555555544   4468999        889887754 4455  48888887653221        


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEE--eccCC
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIW--QPEKT  158 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iw--d~~~~  158 (351)
                                                  +..+...+....|+      ||++.      |+..+. ++...||  |+.. 
T Consensus       282 ----------------------------lt~~~~~~~~~~wS------PDG~~------I~f~s~~~g~~~Iy~~d~~~-  320 (429)
T PRK03629        282 ----------------------------VTDGRSNNTEPTWF------PDSQN------LAYTSDQAGRPQVYKVNING-  320 (429)
T ss_pred             ----------------------------ccCCCCCcCceEEC------CCCCE------EEEEeCCCCCceEEEEECCC-
Confidence                                        12223456778999      78887      766665 3444555  5544 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                       +.. ..+.     ..........|+|+|++|+..+.+   ..|.+||+.++..      ..+... .......|+|||+
T Consensus       321 -g~~-~~lt-----~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------~~Lt~~-~~~~~p~~SpDG~  386 (429)
T PRK03629        321 -GAP-QRIT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------QVLTDT-FLDETPSIAPNGT  386 (429)
T ss_pred             -CCe-EEee-----cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------EEeCCC-CCCCCceECCCCC
Confidence             332 2222     122335578999999998876643   3588899887642      122211 1234578999999


Q ss_pred             EEEEEeCCCc---EEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          236 YLLSVSHDQT---TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       236 ~l~s~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +|+.++.++.   +.++++....           ...+..|...+...+|+|
T Consensus       387 ~i~~~s~~~~~~~l~~~~~~G~~-----------~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        387 MVIYSSSQGMGSVLNLVSTDGRF-----------KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCCCC-----------eEECccCCCCcCCcccCC
Confidence            9998887764   6677764332           223345666788888887

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=5.4e-11  Score=95.49  Aligned_cols=188  Identities=17%  Similarity=0.231  Sum_probs=127.7

Q ss_pred             EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecccc
Q 048511           34 SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGH  113 (351)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h  113 (351)
                      -..|+        ++|+++|+++.- .+.|-|.++-+..+...                                    -
T Consensus        13 ~c~fS--------p~g~yiAs~~~y-rlviRd~~tlq~~qlf~------------------------------------c   47 (447)
T KOG4497|consen   13 FCSFS--------PCGNYIASLSRY-RLVIRDSETLQLHQLFL------------------------------------C   47 (447)
T ss_pred             ceeEC--------CCCCeeeeeeee-EEEEeccchhhHHHHHH------------------------------------H
Confidence            35677        889999999865 67777777654432221                                    1


Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE-EEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS-ILA  192 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-l~~  192 (351)
                      -+.|.-+.|.      .|..+     .|.....|+.|.+|++..  .++...+.     ....++.+++|+|+|+. |.+
T Consensus        48 ldki~yieW~------ads~~-----ilC~~yk~~~vqvwsl~Q--pew~ckId-----eg~agls~~~WSPdgrhiL~t  109 (447)
T KOG4497|consen   48 LDKIVYIEWK------ADSCH-----ILCVAYKDPKVQVWSLVQ--PEWYCKID-----EGQAGLSSISWSPDGRHILLT  109 (447)
T ss_pred             HHHhhheeee------cccee-----eeeeeeccceEEEEEeec--ceeEEEec-----cCCCcceeeeECCCcceEeee
Confidence            2456667777      44443     156667899999999998  77777776     56678999999999964 556


Q ss_pred             EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC---------------------------
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ---------------------------  244 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg---------------------------  244 (351)
                      ...+-+|.+|.+.+..      ..-+.-....+..++|+|+|++.+.++. |.                           
T Consensus       110 seF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg  183 (447)
T KOG4497|consen  110 SEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG  183 (447)
T ss_pred             ecceeEEEEEEeccce------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence            6789999999998853      2333333445678889999988766653 21                           


Q ss_pred             --------cEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          245 --------TTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       245 --------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                              .+.|||.--..          .+  +..| +-.+..++|+|  .+++|+.|+.|+.+||-+
T Consensus       184 ieWsPdg~~laVwd~~Ley----------kv--~aYe~~lG~k~v~wsP--~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  184 IEWSPDGNWLAVWDNVLEY----------KV--YAYERGLGLKFVEWSP--CNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             ceECCCCcEEEEecchhhh----------ee--eeeeeccceeEEEecc--ccceEEeeccchhhhhhc
Confidence                    22233221000          00  1112 23588899999  899999999999999855

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3.3e-11  Score=103.20  Aligned_cols=232  Identities=13%  Similarity=0.117  Sum_probs=156.7

Q ss_pred             CCCCCceEEEEEccCC----CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee
Q 048511            1 MGGLDNKIHLYRGQRT----GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +++.|.+|++|.++..    +.-.+..++++|+.+|..+.|.        .+-++++++  ||-|.+||.--+..+....
T Consensus       752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL--------~~lr~i~Sc--D~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL--------ADLRSIASC--DGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             eccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee--------eccceeeec--cCcceeecccccchhHhhh
Confidence            4789999999998752    2224778999999999999999        777788766  8899999988776654333


Q ss_pred             cccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511           77 STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                      ...                              ..+-.+.|.|+.-.       +..+     +++-++...+|+++|.+
T Consensus       822 dap------------------------------k~~a~~~ikcl~nv-------~~~i-----liAgcsaeSTVKl~DaR  859 (1034)
T KOG4190|consen  822 DAP------------------------------KEGAGGNIKCLENV-------DRHI-----LIAGCSAESTVKLFDAR  859 (1034)
T ss_pred             cCc------------------------------ccCCCceeEecccC-------cchh-----eeeeccchhhheeeecc
Confidence            210                              11122234444321       2223     14444789999999999


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      .  ..+...+++.........+.+++..+.|++++++-.+|.|.+.|.++++     .+......+.....++ .|..+.
T Consensus       860 s--ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~-----vINswrpmecdllqla-apsdq~  931 (1034)
T KOG4190|consen  860 S--CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK-----VINSWRPMECDLLQLA-APSDQA  931 (1034)
T ss_pred             c--ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc-----eeccCCcccchhhhhc-CchhHH
Confidence            9  8899998887777777889999999999999999999999999999984     3444443333333343 355567


Q ss_pred             EEEEeCCCcEEE-EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          237 LLSVSHDQTTRV-FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       237 l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+....|-++.| |-...+..          ....+....+.   -|..+ -|.-+++......+.||.-.
T Consensus       932 L~~saldHslaVnWhaldgim----------h~q~kpppepa---hflqs-vgpSLV~a~~Gn~lgVYad~  988 (1034)
T KOG4190|consen  932 LAQSALDHSLAVNWHALDGIM----------HLQDKPPPEPA---HFLQS-VGPSLVTAQNGNILGVYADS  988 (1034)
T ss_pred             HHhhcccceeEeeehhcCCee----------eeccCCCCcch---hhhhc-cCceeEEeccCcEEEEEecc
Confidence            777777888888 87655541          11111111111   11110 25567888788888998743

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=2.2e-10  Score=92.60  Aligned_cols=238  Identities=11%  Similarity=0.125  Sum_probs=151.0

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+-|.+|.|.        ..|++||||..+|.|.++.-.....- ..                             ....
T Consensus        25 adiis~vef~--------~~Ge~LatGdkgGRVv~f~r~~~~~~-ey-----------------------------~~~t   66 (433)
T KOG1354|consen   25 ADIISAVEFD--------HYGERLATGDKGGRVVLFEREKLYKG-EY-----------------------------NFQT   66 (433)
T ss_pred             hcceeeEEee--------cccceEeecCCCCeEEEeeccccccc-ce-----------------------------eeee
Confidence            4678999999        89999999999999999865433210 00                             1111


Q ss_pred             ecccc------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce-------------E
Q 048511          109 LLIGH------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW-------------M  163 (351)
Q Consensus       109 ~~~~h------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~  163 (351)
                      .++.|            ...|..+.|.+..    +...      ++....|.+|++|.++....+.             +
T Consensus        67 ~fqshepEFDYLkSleieEKinkIrw~~~~----n~a~------FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~  136 (433)
T KOG1354|consen   67 EFQSHEPEFDYLKSLEIEEKINKIRWLDDG----NLAE------FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTI  136 (433)
T ss_pred             eeeccCcccchhhhhhhhhhhhhceecCCC----CccE------EEEecCCcceeeeeeeccccccccccccccCCCCcc
Confidence            22222            3468889999432    2233      7888899999999987632211             0


Q ss_pred             EEEEe----------------ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----c
Q 048511          164 NVVTV----------------GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----F  222 (351)
Q Consensus       164 ~~~~~----------------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~  222 (351)
                      ..+++                .-...|..-|.++.++.|+..++++ .|=.|.+|+++-....  ..+..++.+     .
T Consensus       137 ~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~s--FnIVDIKP~nmEeLt  213 (433)
T KOG1354|consen  137 TSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQS--FNIVDIKPANMEELT  213 (433)
T ss_pred             ceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCc--eeEEEccccCHHHHH
Confidence            00000                0024677778999999998877765 5778999998653210  111222222     3


Q ss_pred             ccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------cccccceeEEEEeeeCCCcEEEEec
Q 048511          223 AAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------QVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       223 ~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      .-|++..|+|. ...|+-.+..|+|++-|++.........+.+.....+      ...-..|..+.|++  +|+++++-+
T Consensus       214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--sGryilsRD  291 (433)
T KOG1354|consen  214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--SGRYILSRD  291 (433)
T ss_pred             HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc--CCcEEEEec
Confidence            45888999995 4567777889999999998554221111112111111      11123589999999  899998874


Q ss_pred             CCCeEEEEecC--chhhhceeeccccc
Q 048511          296 DEKVARVFEAP--LSFLKTLNHATFQE  320 (351)
Q Consensus       296 ~dg~v~vw~~~--~~~~~~~~~~~~~~  320 (351)
                      . -+|++||++  .+.+.+++-|+-.+
T Consensus       292 y-ltvk~wD~nme~~pv~t~~vh~~lr  317 (433)
T KOG1354|consen  292 Y-LTVKLWDLNMEAKPVETYPVHEYLR  317 (433)
T ss_pred             c-ceeEEEeccccCCcceEEeehHhHH
Confidence            4 489999975  66777777766443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.1e-09  Score=98.08  Aligned_cols=220  Identities=13%  Similarity=0.039  Sum_probs=133.1

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccce
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .|.++|.+. ++   ...+..+...+....|+        |+|+.|+..+.+   ..|.+|++.++....          
T Consensus       180 ~l~~~d~~g-~~---~~~l~~~~~~~~~p~wS--------pDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------  237 (430)
T PRK00178        180 TLQRSDYDG-AR---AVTLLQSREPILSPRWS--------PDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------  237 (430)
T ss_pred             EEEEECCCC-CC---ceEEecCCCceeeeeEC--------CCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------
Confidence            466777765 32   23444567788999999        889988876644   358888887654321          


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC--eEEEEeccCCCc
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK--TMMIWQPEKTTG  160 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~--~i~iwd~~~~~~  160 (351)
                                                +....+.+....|+      ||++.      |+ +.+.++  .|.+||+.+  +
T Consensus       238 --------------------------l~~~~g~~~~~~~S------pDG~~------la~~~~~~g~~~Iy~~d~~~--~  277 (430)
T PRK00178        238 --------------------------ITNFEGLNGAPAWS------PDGSK------LAFVLSKDGNPEIYVMDLAS--R  277 (430)
T ss_pred             --------------------------ccCCCCCcCCeEEC------CCCCE------EEEEEccCCCceEEEEECCC--C
Confidence                                      11112234467899      68876      65 444454  588888887  4


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  237 (351)
                      ... .+.     .+........|+|+++.++..+. ++  .|+++|+.+++.      ..+...........|+|+|++|
T Consensus       278 ~~~-~lt-----~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------~~lt~~~~~~~~~~~Spdg~~i  345 (430)
T PRK00178        278 QLS-RVT-----NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------ERVTFVGNYNARPRLSADGKTL  345 (430)
T ss_pred             CeE-Ecc-----cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEeecCCCCccceEECCCCCEE
Confidence            332 221     23334556789999998776553 33  577777766542      1111111223457899999998


Q ss_pred             EEEeCC-C--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhh
Q 048511          238 LSVSHD-Q--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLK  311 (351)
Q Consensus       238 ~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~  311 (351)
                      +..+.+ +  .|.+||+.++..        +.+... .   ......|+|  |+++++..+.+   ..+.++++.+...+
T Consensus       346 ~~~~~~~~~~~l~~~dl~tg~~--------~~lt~~-~---~~~~p~~sp--dg~~i~~~~~~~g~~~l~~~~~~g~~~~  411 (430)
T PRK00178        346 VMVHRQDGNFHVAAQDLQRGSV--------RILTDT-S---LDESPSVAP--NGTMLIYATRQQGRGVLMLVSINGRVRL  411 (430)
T ss_pred             EEEEccCCceEEEEEECCCCCE--------EEccCC-C---CCCCceECC--CCCEEEEEEecCCceEEEEEECCCCceE
Confidence            776643 3  588889877652        122211 1   122458999  88888766543   35667777766554


Q ss_pred             cee
Q 048511          312 TLN  314 (351)
Q Consensus       312 ~~~  314 (351)
                      .+.
T Consensus       412 ~l~  414 (430)
T PRK00178        412 PLP  414 (430)
T ss_pred             ECc
Confidence            444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=6.1e-10  Score=99.09  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=104.6

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .+...+.+.+|+      ||++.      |+..+.+   ..|.+||+.+  +.... +.     .....+...+|+|||+
T Consensus       193 ~~~~~v~~p~wS------PDG~~------la~~s~~~~~~~I~~~dl~~--g~~~~-l~-----~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        193 SSPEPIISPAWS------PDGTK------LAYVSFESKKPVVYVHDLAT--GRRRV-VA-----NFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cCCCCcccceEc------CCCCE------EEEEEccCCCcEEEEEECCC--CCEEE-ee-----cCCCCccceEECCCCC
Confidence            456778899999      78887      8776643   4599999987  44322 11     1223456789999999


Q ss_pred             EEE-EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEE
Q 048511          189 SIL-AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHE  266 (351)
Q Consensus       189 ~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~  266 (351)
                      .|+ +.+.++...||.++...    .....+..+........|+|||+.|+..+. ++...||.+.....      ....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g------~~~~  322 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADG----SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG------AAQR  322 (427)
T ss_pred             EEEEEEccCCCceEEEEECCC----CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC------ceEE
Confidence            876 45677776666654321    113344445555667889999998876554 46666666532210      1112


Q ss_pred             eccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhhce
Q 048511          267 VARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLKTL  313 (351)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~~~  313 (351)
                      +. .  .+......+|+|  +|++|+..+.++   .|.+||+.....+.+
T Consensus       323 lt-~--~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l  367 (427)
T PRK02889        323 VT-F--TGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTAL  367 (427)
T ss_pred             Ee-c--CCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEc
Confidence            21 1  122234678999  899988766554   699999874333333

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.2e-09  Score=94.26  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=97.5

Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  190 (351)
                      ..|.+.|.++.++      .+-..      |-+++.|+.+..|+...  ...++...     .....+.+++.+||+..+
T Consensus        99 ~~h~~~v~~~~~~------~~~~c------iyS~~ad~~v~~~~~~~--~~~~~~~~-----~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   99 DKHYGNVNEILDA------QRLGC------IYSVGADLKVVYILEKE--KVIIRIWK-----EQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             CCCCCcceeeecc------cccCc------eEecCCceeEEEEeccc--ceeeeeec-----cCCCccceEEEcCCCCEE
Confidence            5699999999998      67777      99999999999999998  66666655     566678899999999999


Q ss_pred             EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-----CCEEEEE-eCCCcEEEEcCCC
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-----SDYLLSV-SHDQTTRVFAPWK  253 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----~~~l~s~-~~dg~i~vwd~~~  253 (351)
                      ++++  +.|.+||+++.     +.+..+.+|.++|+++.|.-+     |.++.++ ..+..+.+|-+..
T Consensus       160 ~~as--~~ik~~~~~~k-----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIETK-----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eecc--ceEEEEEccCc-----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9875  57999999998     568999999999999999876     6666544 4567788887655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.28  E-value=3.6e-08  Score=83.63  Aligned_cols=266  Identities=12%  Similarity=0.047  Sum_probs=154.9

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----------CCcEEEEecCCCccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----------DKVIRIWKLALRGSSANT   75 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~   75 (351)
                      ++|.+.|..+ .  +.+.++..-..+- .+ ++        ++++.|+.+..          +..|.+||..+.+....+
T Consensus        27 ~~v~ViD~~~-~--~v~g~i~~G~~P~-~~-~s--------pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i   93 (352)
T TIGR02658        27 TQVYTIDGEA-G--RVLGMTDGGFLPN-PV-VA--------SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI   93 (352)
T ss_pred             ceEEEEECCC-C--EEEEEEEccCCCc-ee-EC--------CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE
Confidence            8899999988 5  3444554322222 24 88        78888777654          789999999999888776


Q ss_pred             ecccc------cceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEe---
Q 048511           76 QSTYR------KEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA---  144 (351)
Q Consensus        76 ~~~~~------~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~---  144 (351)
                      ..+..      .....++++++|+.+++...  +..+.++..-.+  .-+..+..       +++..      +...   
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~v-------p~~~~------vy~t~e~  158 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDV-------PDCYH------IFPTAND  158 (352)
T ss_pred             ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeC-------CCCcE------EEEecCC
Confidence            65432      23347889999999987663  455554443221  11222221       22222      2222   


Q ss_pred             -----ecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          145 -----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       145 -----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                           +.||......+............+..  ....++. .-.|.+ +++++++... |.|.+.|+.............
T Consensus       159 ~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~--~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       159 TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH--PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             ccEEEeecCceEEEEecCCCceEEeeeeeec--CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence                 34554444433331111111111100  0000000 003455 8888887776 999999975543222222222


Q ss_pred             cc-------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          218 PS-------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       218 ~~-------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      +.       ...+.+..++++|+++.++....          .+.|.++|..+.+          .+..+. -+..+..+
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----------vi~~i~-vG~~~~~i  304 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----------RLRKIE-LGHEIDSI  304 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----------EEEEEe-CCCceeeE
Confidence            11       12344455999999988877431          2579999998876          343332 24568999


Q ss_pred             EEeeeCCCc-EEEEec-CCCeEEEEecC-chhhhceee
Q 048511          281 TIIQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       281 ~~~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      ++++  |++ +|++.. .++.|.++|.. ++.++++..
T Consensus       305 avS~--Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       305 NVSQ--DAKPLLYALSTGDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             EECC--CCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence            9999  777 666555 68899999976 667766643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1e-10  Score=100.51  Aligned_cols=190  Identities=11%  Similarity=0.182  Sum_probs=137.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+....|+-++++. |.+  +..|.-..+.+++|..+        +-..+|++|+.||.|..||.+....+..+...   
T Consensus       151 ~gsg~evYRlNLEq-Grf--L~P~~~~~~~lN~v~in--------~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~---  216 (703)
T KOG2321|consen  151 VGSGSEVYRLNLEQ-GRF--LNPFETDSGELNVVSIN--------EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA---  216 (703)
T ss_pred             eecCcceEEEEccc-ccc--ccccccccccceeeeec--------CccceEEecccCceEEEecchhhhhheeeecc---
Confidence            34455677888888 854  45666667899999999        67789999999999999999887665444321   


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccc-----cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHE-----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                                                .....|.     -.|+++.|.      .+|-.      +++|..+|.|.|||++
T Consensus       217 --------------------------~~v~s~pg~~~~~svTal~F~------d~gL~------~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  217 --------------------------SSVNSHPGGDAAPSVTALKFR------DDGLH------VAVGTSTGSVLIYDLR  258 (703)
T ss_pred             --------------------------cccCCCccccccCcceEEEec------CCcee------EEeeccCCcEEEEEcc
Confidence                                      1112222     349999999      67878      9999999999999999


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                      .  ...+....    .....+|..+.|.+.+. --+.......++|||-.+++     +...+. ....+..+|+-|++-
T Consensus       259 a--~~pl~~kd----h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk-----~~asiE-pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  259 A--SKPLLVKD----HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK-----PMASIE-PTSDLNDFCFVPGSG  326 (703)
T ss_pred             c--CCceeecc----cCCccceeeecccccCCCceEEecchHHhhhcccccCC-----ceeecc-ccCCcCceeeecCCc
Confidence            8  43332221    24567899999987532 23334455789999999884     344444 344599999999999


Q ss_pred             EEEEEeCCCcEEEEcCCCcc
Q 048511          236 YLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +++++-.+..+..|=+....
T Consensus       327 m~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             eEEEecCCCcceeEEccccC
Confidence            99999988888777665443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=4.3e-10  Score=90.92  Aligned_cols=174  Identities=14%  Similarity=0.181  Sum_probs=116.1

Q ss_pred             CCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            4 LDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         4 ~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      .+|++.-+.+..+ ++....+.+..|...|..+-|+        ...+++++.+.|..+.---.+.+..+.......  .
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~--------~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~  157 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS--------LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--P  157 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec--------CCceeEEEeccccceEEEeeccCCcccceEeec--c
Confidence            3455555544321 2334556677899999999999        678899999999877543344444433222111  1


Q ss_pred             eeeeEeeecCCeEEecCCceeE----------EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           83 VISLASYIEGPVLVAGSSSYQV----------SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ...+.+.-.  +...|...+.+          .++..+.+|.+.+.++.|.      +...+      |.+|..|..+.+
T Consensus       158 ~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd------~~~~~------LfSg~~d~~vi~  223 (404)
T KOG1409|consen  158 ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD------PGQRL------LFSGASDHSVIM  223 (404)
T ss_pred             CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc------CCCcE------EEeccccCceEE
Confidence            111111111  33344444444          4456688999999999999      55667      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~  207 (351)
                      ||+.-..+....      +.+|...|..+...+--+.+.+++.||.|.+|+++..
T Consensus       224 wdigg~~g~~~e------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  224 WDIGGRKGTAYE------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EeccCCcceeee------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            999864333222      2367777888887777889999999999999998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=2.8e-09  Score=95.20  Aligned_cols=221  Identities=11%  Similarity=0.020  Sum_probs=128.5

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-C--cEEEEecCCCcccceeecccccce
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-K--VIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .|.++|.+. .+.   ..+..+...+.+..|+        |+|+.|+..+.+ +  .|.+||+.+++....         
T Consensus       199 ~l~i~d~dG-~~~---~~l~~~~~~~~~p~wS--------PDG~~La~~s~~~g~~~L~~~dl~tg~~~~l---------  257 (448)
T PRK04792        199 QLMIADYDG-YNE---QMLLRSPEPLMSPAWS--------PDGRKLAYVSFENRKAEIFVQDIYTQVREKV---------  257 (448)
T ss_pred             EEEEEeCCC-CCc---eEeecCCCcccCceEC--------CCCCEEEEEEecCCCcEEEEEECCCCCeEEe---------
Confidence            566667655 322   2334456788899999        889888876543 3  477888876543111         


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCCe--EEEEeccCCCc
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDKT--MMIWQPEKTTG  160 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~  160 (351)
                                              ..+.+   ......|+      ||++.      |+ +.+.++.  |.++|+.+  +
T Consensus       258 ------------------------t~~~g---~~~~~~wS------PDG~~------La~~~~~~g~~~Iy~~dl~t--g  296 (448)
T PRK04792        258 ------------------------TSFPG---INGAPRFS------PDGKK------LALVLSKDGQPEIYVVDIAT--K  296 (448)
T ss_pred             ------------------------cCCCC---CcCCeeEC------CCCCE------EEEEEeCCCCeEEEEEECCC--C
Confidence                                    11122   23357899      68876      65 4555665  77778776  4


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  237 (351)
                      ... .+.     .+.......+|+|+++.|+..+. ++  .|+++|+.+++.      ..+..........+|+|+|++|
T Consensus       297 ~~~-~lt-----~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~------~~Lt~~g~~~~~~~~SpDG~~l  364 (448)
T PRK04792        297 ALT-RIT-----RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV------SRLTFEGEQNLGGSITPDGRSM  364 (448)
T ss_pred             CeE-ECc-----cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEEecCCCCCcCeeECCCCCEE
Confidence            322 222     23334567899999998876553 33  466667766532      1111122223456899999998


Q ss_pred             EEEeC-CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CCC--eEEEEecCchhhh
Q 048511          238 LSVSH-DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEK--VARVFEAPLSFLK  311 (351)
Q Consensus       238 ~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg--~v~vw~~~~~~~~  311 (351)
                      +..+. ++  .|.++|+.++..        ..+...    .......|+|  +++.|+..+ .++  .+.+++.++...+
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~--------~~lt~~----~~d~~ps~sp--dG~~I~~~~~~~g~~~l~~~~~~G~~~~  430 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAM--------QVLTST----RLDESPSVAP--NGTMVIYSTTYQGKQVLAAVSIDGRFKA  430 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCe--------EEccCC----CCCCCceECC--CCCEEEEEEecCCceEEEEEECCCCceE
Confidence            76654 34  455567766541        122211    1122347999  888776554 344  3677788777666


Q ss_pred             ceee
Q 048511          312 TLNH  315 (351)
Q Consensus       312 ~~~~  315 (351)
                      .+..
T Consensus       431 ~l~~  434 (448)
T PRK04792        431 RLPA  434 (448)
T ss_pred             ECcC
Confidence            6643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=2.2e-10  Score=91.43  Aligned_cols=269  Identities=14%  Similarity=0.205  Sum_probs=156.6

Q ss_pred             CCCCCceEEEEEccCC--CceEEEEeeeecC------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec
Q 048511            1 MGGLDNKIHLYRGQRT--GKFVRACELKGHT------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL   66 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~--~~~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~   66 (351)
                      ||...|.|.+|.-+..  .+++....+++|.            ..|..+.|..+      .....++..+.|++|++|.+
T Consensus        43 tGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~------t~r~hFLlstNdktiKlWKi  116 (460)
T COG5170          43 TGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD------TGRNHFLLSTNDKTIKLWKI  116 (460)
T ss_pred             ecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC------CCcceEEEecCCceeeeeee
Confidence            4566699999976651  1234445677775            36888999822      22345666778999999999


Q ss_pred             CCCcccceeecccccceeeeEeeecCCeEEe------c--CCceeE---EEEEec-cccccceEEEEecCCCCCCCCCcc
Q 048511           67 ALRGSSANTQSTYRKEVISLASYIEGPVLVA------G--SSSYQV---SVESLL-IGHEDWVYSVQWEPPSTAPSDGVS  134 (351)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~--~~~~~~---~~~~~~-~~h~~~v~~l~~~p~~~~~~~~~~  134 (351)
                      ...........    ....-.-+|.+..+.+      +  +....+   ...+.. ..|.--++++.|+      .|.+.
T Consensus       117 yeknlk~va~n----nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N------sD~et  186 (460)
T COG5170         117 YEKNLKVVAEN----NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN------SDKET  186 (460)
T ss_pred             ecccchhhhcc----ccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec------Cchhe
Confidence            76533211110    0000001111111110      0  011111   111112 5688889999999      67776


Q ss_pred             cCCCceeEEeecCCeEEEEeccCCCcce-EEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCc
Q 048511          135 CQQPSSILSASMDKTMMIWQPEKTTGIW-MNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~  212 (351)
                            ++++ .|-.|.+|++.-..+.. +..++...+..-..-|++..|+|.. ..+.-++..|.|++-|++.......
T Consensus       187 ------~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         187 ------LLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             ------eeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence                  6665 67789999998643321 2223322233334458899999954 5667778889999999985421100


Q ss_pred             -cccc----------ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-------
Q 048511          213 -QPQK----------VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-------  274 (351)
Q Consensus       213 -~~~~----------~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------  274 (351)
                       +.+.          -+.+-...|..+.|+++|+++++-+. -+|+|||++..+.         ++.+...|.       
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---------pikTi~~h~~l~~~l~  329 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---------PIKTIPMHCDLMDELN  329 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---------CceeechHHHHHHHHH
Confidence             0000          11122346888999999999987654 5899999987763         222221111       


Q ss_pred             -----c---ceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          275 -----H---DINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       275 -----~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                           .   .-..+.|+.  |...+++|+.....-++-
T Consensus       330 d~YEnDaifdkFeisfSg--d~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         330 DVYENDAIFDKFEISFSG--DDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hhhhccceeeeEEEEecC--Ccccccccccccceeeec
Confidence                 1   123466776  777888888777777765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=1.5e-09  Score=95.89  Aligned_cols=244  Identities=17%  Similarity=0.219  Sum_probs=165.5

Q ss_pred             CCCCCceEEEEEccCC---C---------ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511            1 MGGLDNKIHLYRGQRT---G---------KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL   68 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~---~---------~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~   68 (351)
                      +|+.||.++|..+.++   .         .+..-.++.||.+.|.-+.|+        .+...|-|+..+|.|.+|-+..
T Consensus        31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN--------e~~QKLTtSDt~GlIiVWmlyk  102 (1189)
T KOG2041|consen   31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN--------ENNQKLTTSDTSGLIIVWMLYK  102 (1189)
T ss_pred             eccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec--------cccccccccCCCceEEEEeeec
Confidence            5899999999987651   1         123345789999999999999        7788899999999999999998


Q ss_pred             Ccccceeeccc-ccceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCC
Q 048511           69 RGSSANTQSTY-RKEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        69 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      +....++.... .+-+.++.|..+|..+++.-.++.+.+-.         .+++.  ....+.|+      +|.++    
T Consensus       103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws------~D~~~----  170 (1189)
T KOG2041|consen  103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWS------EDLEQ----  170 (1189)
T ss_pred             ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeec------ccHHH----
Confidence            88765554333 45677999999999998877777653322         12221  23467899      67777    


Q ss_pred             ceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEc--------CCCCEEEEEeeCCeEEEEEcc
Q 048511          139 SSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWS--------PDGRSILAHGYGGAFHLWRNV  205 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~--------~~~~~l~~~~~dg~i~~~d~~  205 (351)
                        ++.+-..|.++++|.+..     +..+..... +........|-.+.|.        |+...++++...|.+.+..-.
T Consensus       171 --~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t-g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  171 --ALFKKANGETHLYDNQGNFERKLEKDCEVNGT-GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             --HHhhhcCCcEEEecccccHHHhhhhceEEeee-eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence              888888999999998741     011111111 0011112235566663        577899999999999887655


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC---------cEEEEcCCCccccccCccceEEeccccccccc
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ---------TTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      +..    .++..-  ..-.+..+.|+++|..|+.++.|.         .|.+|..           ..+.+..++..+..
T Consensus       248 ND~----~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----------~G~i~gtlkvpg~~  310 (1189)
T KOG2041|consen  248 NDP----EPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----------YGHIVGTLKVPGSC  310 (1189)
T ss_pred             CCC----CCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-----------chhheEEEecCCce
Confidence            432    233222  224688899999999999988653         3444432           11244555666777


Q ss_pred             eeEEEEee
Q 048511          277 INCVTIIQ  284 (351)
Q Consensus       277 i~~~~~~~  284 (351)
                      |+.++|-.
T Consensus       311 It~lsWEg  318 (1189)
T KOG2041|consen  311 ITGLSWEG  318 (1189)
T ss_pred             eeeeEEcC
Confidence            99999976

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=9e-09  Score=91.29  Aligned_cols=227  Identities=10%  Similarity=-0.011  Sum_probs=125.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccE--E-EEeeCCCc--EEEEecCCCcccceeecccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISIL--L-VSSSQDKV--IRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~--l-~t~~~dg~--i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ..|.+.|.+. ++..   .+......+..-.|+        |+|+.  + ++...+|.  |.+.++..++....      
T Consensus       165 ~~l~~~d~dG-~~~~---~lt~~~~~~~sP~wS--------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l------  226 (428)
T PRK01029        165 GELWSVDYDG-QNLR---PLTQEHSLSITPTWM--------HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI------  226 (428)
T ss_pred             ceEEEEcCCC-CCce---EcccCCCCcccceEc--------cCCCceEEEEEEccCCCceEEEEECCCCCceEe------
Confidence            4566667665 4332   233344556677899        77764  2 34444444  55556665532211      


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEec
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQP  155 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~  155 (351)
                                                 ..+   .+.....+|+      |||+.      |+..+.     +..+.+|++
T Consensus       227 ---------------------------t~~---~g~~~~p~wS------PDG~~------Laf~s~~~g~~di~~~~~~~  264 (428)
T PRK01029        227 ---------------------------LAL---QGNQLMPTFS------PRKKL------LAFISDRYGNPDLFIQSFSL  264 (428)
T ss_pred             ---------------------------ecC---CCCccceEEC------CCCCE------EEEEECCCCCcceeEEEeec
Confidence                                       111   2233457888      68876      665442     333455676


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEE--cccCcccCcccccccccccccEEEEEeec
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWR--NVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d--~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ..........+.  .  .........+|+|||+.|+..+ .+|...+|.  +....    .....+..+...+....|+|
T Consensus       265 ~~g~~g~~~~lt--~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g----~~~~~lt~~~~~~~~p~wSP  336 (428)
T PRK01029        265 ETGAIGKPRRLL--N--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG----QSPRLLTKKYRNSSCPAWSP  336 (428)
T ss_pred             ccCCCCcceEee--c--CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc----cceEEeccCCCCccceeECC
Confidence            642111111121  0  1112335679999999877655 456555554  43211    11233333445667889999


Q ss_pred             CCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-C--CCeEEEEecC
Q 048511          233 SSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-D--EKVARVFEAP  306 (351)
Q Consensus       233 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~--dg~v~vw~~~  306 (351)
                      ||+.|+..+.+   ..|.+||+.+++.        ..+.   .....+....|+|  |++.|+..+ .  ...|.+|++.
T Consensus       337 DG~~Laf~~~~~g~~~I~v~dl~~g~~--------~~Lt---~~~~~~~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        337 DGKKIAFCSVIKGVRQICVYDLATGRD--------YQLT---TSPENKESPSWAI--DSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCe--------EEcc---CCCCCccceEECC--CCCEEEEEECCCCCceEEEEECC
Confidence            99988866543   4699999987762        1221   1123466789999  888776433 2  3568888887


Q ss_pred             chhhhce
Q 048511          307 LSFLKTL  313 (351)
Q Consensus       307 ~~~~~~~  313 (351)
                      +...+.+
T Consensus       404 ~g~~~~L  410 (428)
T PRK01029        404 TKKTRKI  410 (428)
T ss_pred             CCCEEEe
Confidence            5444433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.20  E-value=4.5e-10  Score=92.61  Aligned_cols=157  Identities=15%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCc--ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTG--IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~  207 (351)
                      +.+++      ||.+..+....++++.....  +......      -...-+.+.|..+......+..-|.++-+|+...
T Consensus        72 ~~~~l------lAv~~~~K~~~~f~~~~~~~~~kl~~~~~------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   72 DSGRL------VAVATSSKQRAVFDYRENPKGAKLLDVSC------VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             CCceE------EEEEeCCCceEEEEEecCCCcceeeeEee------cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            67777      89888888888888876322  1122221      1122344555555666666665555555555432


Q ss_pred             cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-cccccceeEEEEeeeC
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-QVHGHDINCVTIIQGK  286 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  286 (351)
                      ..   .+...+.+|-+.++.|+|+||+++|+++..|..|+|-.+....          .+..+ -+|..-|..++..+  
T Consensus       140 ~~---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------~IesfclGH~eFVS~isl~~--  204 (390)
T KOG3914|consen  140 DS---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------VIESFCLGHKEFVSTISLTD--  204 (390)
T ss_pred             cc---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------chhhhccccHhheeeeeecc--
Confidence            11   2345566899999999999999999999999999997775543          33332 36888899999987  


Q ss_pred             CCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          287 GNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       287 ~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                       ++.|++||.|++|++||+. |+.+.++.
T Consensus       205 -~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  205 -NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             -CceeeecCCCCcEEEEecccCCcccccc
Confidence             7789999999999999986 88776554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.19  E-value=6.8e-11  Score=104.48  Aligned_cols=223  Identities=22%  Similarity=0.309  Sum_probs=146.0

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeee
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL   86 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~   86 (351)
                      .-.+|++.....-.....+.+|..+|+.+.|.    +   .....|+|++.|-.+..||++..................+
T Consensus        92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~----~---q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFN----P---QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEecCccceeccccC----C---CCCcceeeccccccceeeeccCCCcceeeeecccccCcee
Confidence            34567765423224455778999999999999    3   3456999999999999999988765443333333444555


Q ss_pred             EeeecCCeEEecCCceeEEE---------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           87 ASYIEGPVLVAGSSSYQVSV---------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        87 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      .|+.....+.+......+.+         ...+++|...|+.++|..     .....      +.+.+.|++|+.||...
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr-----~~~s~------~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR-----FKYSE------IMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh-----hhhhh------hcccCCCCceeeecccc
Confidence            56554333333332233333         344677888899999883     23334      89999999999999987


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCC--EEEEEeeCCeEEEEEcccCccc-----CcccccccccccccEEEEEe
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGR--SILAHGYGGAFHLWRNVGVDID-----NWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~~~~~~v~~v~~  230 (351)
                      ...++..++.      ...+|+.-++-|-|.  ++.-.-.+..+.+++.++....     ..++++++.+|...|....|
T Consensus       234 St~e~~~~vt------t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  234 STTESKRTVT------TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW  307 (1081)
T ss_pred             cccccceecc------ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence            4333333332      345677777777443  3332223335666655443222     34789999999999887777


Q ss_pred             ecCCC----------EEEEEeCCCcEEEEcCCC
Q 048511          231 SRSSD----------YLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       231 sp~~~----------~l~s~~~dg~i~vwd~~~  253 (351)
                      ...+.          .|+|=+.|..+++|-+.+
T Consensus       308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            54322          589999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.18  E-value=6.5e-09  Score=81.49  Aligned_cols=158  Identities=11%  Similarity=-0.078  Sum_probs=108.7

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc-ccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK-VPS  219 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~  219 (351)
                      +..++.|.++++.++..  +.......     .....+.+++++++++++++.+....|..|.+.....   ..+. ...
T Consensus       131 ~~i~sndht~k~~~~~~--~s~~~~~h-----~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~~~a  200 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSG--DSNKFAVH-----NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENIYEA  200 (344)
T ss_pred             eeeccCCcceeEEEEec--Ccccceee-----ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---eeeeeEec
Confidence            77888999999999886  32222221     1113378899999999999999999999999976542   2222 222


Q ss_pred             cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      ..+..-.+..|+.....+|++..||++.|||++....     .....-..-..|.+.+..+.|++..--.+|.-.-.-+.
T Consensus       201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~  275 (344)
T KOG4532|consen  201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT-----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR  275 (344)
T ss_pred             ccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc-----chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce
Confidence            2334456788999889999999999999999998762     12222222335888899999997222345555556678


Q ss_pred             EEEEecC-chhhhce
Q 048511          300 ARVFEAP-LSFLKTL  313 (351)
Q Consensus       300 v~vw~~~-~~~~~~~  313 (351)
                      +.|-|+. +.-.+.+
T Consensus       276 ~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  276 VHVVDTRNYVNHQVI  290 (344)
T ss_pred             EEEEEcccCceeeEE
Confidence            8888876 4433333

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=1.4e-10  Score=102.50  Aligned_cols=251  Identities=15%  Similarity=0.148  Sum_probs=163.4

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc-cccceeeeEeeec--CCeEEec-------
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-YRKEVISLASYIE--GPVLVAG-------   98 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~-------   98 (351)
                      .+++.++..+        |.|+-+|.++.-| +.+-|+............ ..-.+....|++.  ..+.++.       
T Consensus        24 ~~~~~a~si~--------p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai   94 (1081)
T KOG0309|consen   24 DGGFNAVSIN--------PSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI   94 (1081)
T ss_pred             cCcccceeec--------cccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh
Confidence            5678888888        7788899898877 445676654322211111 1112223333332  2222221       


Q ss_pred             ------CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511           99 ------SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus        99 ------~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                            ..+.  .+.-.+.+|...|+.+.|.|     .....      +++++.|-.++.||+++.. ..+....     
T Consensus        95 iwnlA~ss~~--aIef~lhghsraitd~n~~~-----q~pdV------latcsvdt~vh~wd~rSp~-~p~ys~~-----  155 (1081)
T KOG0309|consen   95 IWNLAKSSSN--AIEFVLHGHSRAITDINFNP-----QHPDV------LATCSVDTYVHAWDMRSPH-RPFYSTS-----  155 (1081)
T ss_pred             hhhhhcCCcc--ceEEEEecCccceeccccCC-----CCCcc------eeeccccccceeeeccCCC-cceeeee-----
Confidence                  1111  22334678999999999997     33345      9999999999999999842 1222221     


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~  251 (351)
                      .-......++|+-....+.+.+....|++||++.+.    .++..+++|...|+.+.|..- ...+.+++.|++|+.||.
T Consensus       156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             cccccCceeeecccCcchhhhccCCceEEEeccCCC----cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            223345678998766667777788889999999876    788899999999999998763 345788899999999998


Q ss_pred             CCcccccc---------------------------------------------CccceEEeccccccccceeEEEEee--
Q 048511          252 WKNVASLM---------------------------------------------GENSWHEVARPQVHGHDINCVTIIQ--  284 (351)
Q Consensus       252 ~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~--  284 (351)
                      ........                                             ......++..+.+|...|....|-.  
T Consensus       232 ~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~  311 (1081)
T KOG0309|consen  232 SKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK  311 (1081)
T ss_pred             cccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence            65432211                                             0011235566677777665555532  


Q ss_pred             ------eCCCcEEEEecCCCeEEEEecCchhhh
Q 048511          285 ------GKGNHRFVSGADEKVARVFEAPLSFLK  311 (351)
Q Consensus       285 ------~~~~~~l~s~~~dg~v~vw~~~~~~~~  311 (351)
                            ......|++-+.|..+|+|-+...+..
T Consensus       312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~i~~  344 (1081)
T KOG0309|consen  312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQIQR  344 (1081)
T ss_pred             cccCCCCccceeEEEeecCCceEeeeccHHHHH
Confidence                  112457999999999999988755443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.17  E-value=1.9e-08  Score=87.11  Aligned_cols=188  Identities=14%  Similarity=0.062  Sum_probs=121.8

Q ss_pred             ccEE-EEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC
Q 048511           49 SILL-VSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST  127 (351)
Q Consensus        49 ~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  127 (351)
                      ++++ ++-..++.|.+.|..+.+.+..+.                                   .....-..+.|+    
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~-----------------------------------~~~~~h~~~~~s----   45 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIP-----------------------------------TGGAPHAGLKFS----   45 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE------------------------------------STTEEEEEE-T----
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEc-----------------------------------CCCCceeEEEec----
Confidence            3455 455678999999998876554332                                   122223346788    


Q ss_pred             CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc
Q 048511          128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG  206 (351)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~  206 (351)
                        +|+++      +.+++.||.|.++|+.+  .+.+.+++.      .....+++++++|++++++. .++.+.++|.++
T Consensus        46 --~Dgr~------~yv~~rdg~vsviD~~~--~~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   46 --PDGRY------LYVANRDGTVSVIDLAT--GKVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             --T-SSE------EEEEETTSEEEEEETTS--SSEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred             --CCCCE------EEEEcCCCeEEEEECCc--ccEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence              79998      88899999999999999  778877763      23467899999999998776 579999999988


Q ss_pred             CcccCccccccccc-------ccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511          207 VDIDNWQPQKVPSG-------HFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN  278 (351)
Q Consensus       207 ~~~~~~~~~~~~~~-------~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (351)
                      .     ++++.+..       ....+.++..+|....++..-. -+.|.+.|......       . ....+ ..+....
T Consensus       110 l-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-------~-~~~~i-~~g~~~~  175 (369)
T PF02239_consen  110 L-----EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-------L-KVTTI-KVGRFPH  175 (369)
T ss_dssp             -------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-------E-EEEEE-E--TTEE
T ss_pred             c-----cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-------c-ceeee-ccccccc
Confidence            6     34554432       2346788888898886555544 48888888766541       1 11111 2234467


Q ss_pred             EEEEeeeCCCcEEEE-ecCCCeEEEEecCc
Q 048511          279 CVTIIQGKGNHRFVS-GADEKVARVFEAPL  307 (351)
Q Consensus       279 ~~~~~~~~~~~~l~s-~~~dg~v~vw~~~~  307 (351)
                      ...|+|  ++++++. ...+..|-++|...
T Consensus       176 D~~~dp--dgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  176 DGGFDP--DGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             EEEE-T--TSSEEEEEEGGGTEEEEEETTT
T ss_pred             ccccCc--ccceeeecccccceeEEEeecc
Confidence            889999  8877655 45677999999873

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=8.1e-09  Score=92.16  Aligned_cols=161  Identities=12%  Similarity=0.065  Sum_probs=106.0

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .+...+....|+      ++++.      |+.+..+   ..|++||+.+  +..... .     .....+.+++|+|+++
T Consensus       187 ~~~~~~~~p~~S------pdg~~------la~~~~~~~~~~i~v~d~~~--g~~~~~-~-----~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       187 RSREPILSPAWS------PDGQK------LAYVSFESGKPEIYVQDLAT--GQREKV-A-----SFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cCCCceecccCC------CCCCE------EEEEEcCCCCcEEEEEECCC--CCEEEe-e-----cCCCCccceEECCCCC
Confidence            355568888999      78888      8877654   4799999987  433221 1     2233456789999998


Q ss_pred             EEEEE-eeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCcc
Q 048511          189 SILAH-GYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       189 ~l~~~-~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~  262 (351)
                      .|+.. ..++  .|++||+.++.      ...+..+........|+|+++.|+..+. ++  .|+++|+..++       
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-------  313 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQ------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-------  313 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCC------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------
Confidence            77644 4443  58888887753      2233334444556789999998876654 33  57777876554       


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecCCC---eEEEEecCchhhh
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK---VARVFEAPLSFLK  311 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~v~vw~~~~~~~~  311 (351)
                       ...+   ..+........|+|  ++.+|+..+.++   .|.+||+.....+
T Consensus       314 -~~~l---~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       314 -VRRL---TFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             -EEEe---ecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence             1122   22334567789999  888888887765   7888887754333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=2.6e-10  Score=88.76  Aligned_cols=150  Identities=14%  Similarity=0.142  Sum_probs=99.1

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-----eCCeEEEEEcccCcccCcccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-----YGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      ++++..||.+.+++.+. .......+.     .....-.+.+....++.+.++.     .-+..+.|+++..+    ...
T Consensus       104 V~~~~~dg~~~v~s~~~-~~~~~~~i~-----~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~----t~~  173 (319)
T KOG4714|consen  104 VCIGYADGSLAVFSTDK-DLALMSRIP-----SIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK----TLI  173 (319)
T ss_pred             eEecCCCceEEEEechH-HHhhhhhcc-----cccccccccceeecccEEecCCcceEeeccceeeecccccc----ccc
Confidence            89999999999999875 111111111     1111112223333444444332     12345666665432    111


Q ss_pred             cccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          216 KVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      ...+ ....|.+++-+|.. +++++|+.||.+-+||.++..         .+...+..|..+|+.+-|+| .++..|.++
T Consensus       174 ~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHp-k~p~~Lft~  242 (319)
T KOG4714|consen  174 PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHP-KNPEHLFTC  242 (319)
T ss_pred             cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccC-CCchheeEe
Confidence            1111 12348999999854 567788899999999999886         26677789999999999999 578999999


Q ss_pred             cCCCeEEEEecCchhhh
Q 048511          295 ADEKVARVFEAPLSFLK  311 (351)
Q Consensus       295 ~~dg~v~vw~~~~~~~~  311 (351)
                      ++||.+--||.++.++.
T Consensus       243 sedGslw~wdas~~~l~  259 (319)
T KOG4714|consen  243 SEDGSLWHWDASTTFLS  259 (319)
T ss_pred             cCCCcEEEEcCCCceEE
Confidence            99999999998876554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=1.1e-07  Score=91.42  Aligned_cols=234  Identities=13%  Similarity=0.161  Sum_probs=153.8

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE----ecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW----KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV  104 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  104 (351)
                      .+.|.++.|.        ++...++.+..+|.|.+.    +...  ...+........+.+++|+||+..++.....+.+
T Consensus        75 ~~~ivs~~yl--------~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l  144 (928)
T PF04762_consen   75 NDKIVSFQYL--------ADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLALVTGEGNL  144 (928)
T ss_pred             CCcEEEEEec--------cCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence            3578888888        777788888889999988    4333  2233333446789999999999999887655544


Q ss_pred             EEEE-------------------------------eccc------------------------cccceEEEEecCCCCCC
Q 048511          105 SVES-------------------------------LLIG------------------------HEDWVYSVQWEPPSTAP  129 (351)
Q Consensus       105 ~~~~-------------------------------~~~~------------------------h~~~v~~l~~~p~~~~~  129 (351)
                      .+..                               .+.|                        +.+.-..++|-      
T Consensus       145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR------  218 (928)
T PF04762_consen  145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR------  218 (928)
T ss_pred             EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC------
Confidence            2111                               0110                        22234567788      


Q ss_pred             CCCcccCCCceeEEeec---C---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEE
Q 048511          130 SDGVSCQQPSSILSASM---D---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFH  200 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~---d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~  200 (351)
                      .||.+      ||+.+.   .   +.++||+-+   |....+..     .-.+--.+++|.|.|++||+.-.   ...|.
T Consensus       219 GDG~y------FAVss~~~~~~~~R~iRVy~Re---G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  219 GDGEY------FAVSSVEPETGSRRVIRVYSRE---GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             CCCcE------EEEEEEEcCCCceeEEEEECCC---ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence            89998      988875   2   578999876   43332222     11222346899999999998775   35677


Q ss_pred             EEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeE
Q 048511          201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINC  279 (351)
Q Consensus       201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~  279 (351)
                      +|.-+.-+...|...  +......|..+.|++++..||..-.|. |.+|-..+.        .|.....+.... ..+..
T Consensus       285 FfErNGLrhgeF~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--------HWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  285 FFERNGLRHGEFTLR--FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY--------HWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             EEecCCcEeeeEecC--CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC--------EEEEEEEEEccCCCCCCc
Confidence            776655443333222  223456799999999999999877665 999988665        466655544332 23556


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      +.|+| .+...|.....+|.+..++
T Consensus       354 ~~Wdp-e~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  354 VKWDP-EKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             eEECC-CCCCEEEEEecCCcEEEEE
Confidence            99999 3566677776666665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=4.3e-09  Score=93.13  Aligned_cols=135  Identities=19%  Similarity=0.298  Sum_probs=101.5

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .....|++|+        ....++|.||.||.+++-.+.+...-.....                 |+.   ...+..-+
T Consensus        14 nvkL~c~~WN--------ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------------laa---~snLsmNQ   65 (1189)
T KOG2041|consen   14 NVKLHCAEWN--------KESGYIACGGADGLLKVLKLGTDTTDLNKSG-----------------LAA---ASNLSMNQ   65 (1189)
T ss_pred             CceEEEEEEc--------ccCCeEEeccccceeEEEEccccCCcccccc-----------------ccc---ccccchhh
Confidence            3467899999        8889999999999999999876543211110                 000   11223446


Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      ++.||...|..+.|+      .+.+.      |-+...+|.|.+|-+-.  +.+...+.   .....+.|.+++|+.+|.
T Consensus        66 tLeGH~~sV~vvTWN------e~~QK------LTtSDt~GlIiVWmlyk--gsW~EEMi---NnRnKSvV~SmsWn~dG~  128 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWN------ENNQK------LTTSDTSGLIIVWMLYK--GSWCEEMI---NNRNKSVVVSMSWNLDGT  128 (1189)
T ss_pred             hhccCcceEEEEEec------ccccc------ccccCCCceEEEEeeec--ccHHHHHh---hCcCccEEEEEEEcCCCc
Confidence            789999999999999      66667      89999999999999988  76655443   234566789999999999


Q ss_pred             EEEEEeeCCeEEEEEcccCc
Q 048511          189 SILAHGYGGAFHLWRNVGVD  208 (351)
Q Consensus       189 ~l~~~~~dg~i~~~d~~~~~  208 (351)
                      .++....||.|.+=.++.++
T Consensus       129 kIcIvYeDGavIVGsvdGNR  148 (1189)
T KOG2041|consen  129 KICIVYEDGAVIVGSVDGNR  148 (1189)
T ss_pred             EEEEEEccCCEEEEeeccce
Confidence            99999889888777666543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.9e-07  Score=76.63  Aligned_cols=234  Identities=13%  Similarity=0.089  Sum_probs=143.8

Q ss_pred             CCcEEEEecCCCcc-c-ceeecccccceeeeEeeecCCeEEecCCc---------------eeEEEEEeccccccceEEE
Q 048511           58 DKVIRIWKLALRGS-S-ANTQSTYRKEVISLASYIEGPVLVAGSSS---------------YQVSVESLLIGHEDWVYSV  120 (351)
Q Consensus        58 dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~~h~~~v~~l  120 (351)
                      ++-|.+|++.+..- + ............-++++++++.|.++...               +.+.+......-..+-+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45699999984322 2 12222334577788999999888775433               2223332222222334678


Q ss_pred             EecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEecccccccc----------ceEEEEEcCCCCE
Q 048511          121 QWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSAL----------GFYGGHWSPDGRS  189 (351)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------~i~~i~~~~~~~~  189 (351)
                      +++      +++++      ++++.. .|.|.++-++.. |.........   .|..          -+-...+.|++++
T Consensus        95 svd------~~g~~------vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~---~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          95 SVD------EDGRF------VFVANYHSGSVSVYPLQAD-GSLQPVVQVV---KHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             EEC------CCCCE------EEEEEccCceEEEEEcccC-Cccccceeee---ecCCCCCCccccCCccceeeeCCCCCE
Confidence            888      78887      777654 688999999763 3332222211   1222          2778899999999


Q ss_pred             EEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEe
Q 048511          190 ILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEV  267 (351)
Q Consensus       190 l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~  267 (351)
                      |++.... ..|.+|++..+........ .+ ......+-|.|+|++++....++ +++|.+|........   ...++.+
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i  233 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK---FEELQTI  233 (346)
T ss_pred             EEEeecCCceEEEEEcccCcccccccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce---EEEeeee
Confidence            9988744 6799999987654322222 22 23445688999999999877665 899999999874211   1222222


Q ss_pred             ccccc---cccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC--chhhhcee
Q 048511          268 ARPQV---HGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP--LSFLKTLN  314 (351)
Q Consensus       268 ~~~~~---~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~--~~~~~~~~  314 (351)
                      ..+..   -......+.+++  ||++|.++. ....|-+|.+.  +..+..+.
T Consensus       234 ~tlP~dF~g~~~~aaIhis~--dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~  284 (346)
T COG2706         234 DTLPEDFTGTNWAAAIHISP--DGRFLYASNRGHDSIAVFSVDPDGGKLELVG  284 (346)
T ss_pred             ccCccccCCCCceeEEEECC--CCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence            22211   123356677777  899887776 34578888865  44444333

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=5.2e-08  Score=83.94  Aligned_cols=259  Identities=11%  Similarity=0.072  Sum_probs=157.1

Q ss_pred             ceEEEEEccCCCceEEEEeeee--cCCcee-EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKG--HTDWIR-SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~--h~~~V~-~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..++|||+.+ |..  ...+..  -...++ -..|+        .+++++|--..| .|.|++......+ .........
T Consensus       282 ~~l~IWDI~t-G~l--krsF~~~~~~~~~WP~frWS--------~DdKy~Arm~~~-sisIyEtpsf~ll-d~Kslki~g  348 (698)
T KOG2314|consen  282 QQLIIWDIAT-GLL--KRSFPVIKSPYLKWPIFRWS--------HDDKYFARMTGN-SISIYETPSFMLL-DKKSLKISG  348 (698)
T ss_pred             ceEEEEEccc-cch--hcceeccCCCccccceEEec--------cCCceeEEeccc-eEEEEecCceeee-cccccCCcc
Confidence            5799999999 744  334433  222333 35799        889999987764 6889988764322 222233457


Q ss_pred             eeeeEeeecCCeEEecCCce-----eEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEe-----
Q 048511           83 VISLASYIEGPVLVAGSSSY-----QVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-----  144 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-----  144 (351)
                      +....|+|.+.+|+......     .+.+..        ...-|.-.=..+.|-      .+|.+      |+.-     
T Consensus       349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ------k~gdy------LcvkvdR~t  416 (698)
T KOG2314|consen  349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ------KSGDY------LCVKVDRHT  416 (698)
T ss_pred             ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec------cCCcE------EEEEEEeec
Confidence            88889999999988754221     111111        111111111234444      45554      4432     


Q ss_pred             -----ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEEEEEcccCcccCccccc
Q 048511          145 -----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       145 -----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~  216 (351)
                           +.-..+-|+.++.. ...+..+      .-...|...+|.|.|..+++-+.   ..++.+|-+++.. ..+.++.
T Consensus       417 K~~~~g~f~n~eIfrireK-dIpve~v------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk  488 (698)
T KOG2314|consen  417 KSKVKGQFSNLEIFRIREK-DIPVEVV------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVK  488 (698)
T ss_pred             cccccceEeeEEEEEeecc-CCCceee------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhh
Confidence                 11223556666542 1222222      23446888999999987766543   3679999988532 2235566


Q ss_pred             ccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE
Q 048511          217 VPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS  293 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  293 (351)
                      .+..  ...+.+.|+|.|++++.+.   ..|.+..+|+.....        +.+... .| ...+.+.|.|  .|+++++
T Consensus       489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~--------k~~~~~-eh-~~at~veWDP--tGRYvvT  554 (698)
T KOG2314|consen  489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL--------KDTASP-EH-FAATEVEWDP--TGRYVVT  554 (698)
T ss_pred             hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhh--------hhccCc-cc-cccccceECC--CCCEEEE
Confidence            6654  4567899999999987664   578999999865321        122221 23 2368899999  8999999


Q ss_pred             ecCC------CeEEEEecCchhhh
Q 048511          294 GADE------KVARVFEAPLSFLK  311 (351)
Q Consensus       294 ~~~d------g~v~vw~~~~~~~~  311 (351)
                      ++.-      .--++|+..|..++
T Consensus       555 ~ss~wrhk~d~GYri~tfqGrll~  578 (698)
T KOG2314|consen  555 SSSSWRHKVDNGYRIFTFQGRLLK  578 (698)
T ss_pred             eeehhhhccccceEEEEeecHHHH
Confidence            8754      44578888877664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=8.4e-08  Score=82.75  Aligned_cols=214  Identities=16%  Similarity=0.243  Sum_probs=136.5

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEE-----eeCCCcEEEEecCCCcc--cceeec
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVS-----SSQDKVIRIWKLALRGS--SANTQS   77 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t-----~~~dg~i~iwd~~~~~~--~~~~~~   77 (351)
                      .+.+++|+.....  ....  +-|...|+.+.++|.      +....+|+     .|.=+.|+||.......  ......
T Consensus       145 ~nev~f~~~~~f~--~~~~--kl~~~~i~~f~lSpg------p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks  214 (566)
T KOG2315|consen  145 SNEVQFYDLGSFK--TIQH--KLSVSGITMLSLSPG------PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS  214 (566)
T ss_pred             cceEEEEecCCcc--ceee--eeeccceeeEEecCC------CCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc
Confidence            3568888877611  2222  336788999999932      22335553     24556799999873322  222233


Q ss_pred             ccccceeeeEeeecCCeEEe-cCC--c---------eeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCC
Q 048511           78 TYRKEVISLASYIEGPVLVA-GSS--S---------YQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~-~~~--~---------~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      .....-..+.|.+-|.-|++ ...  |         ..+.++..-       ....++|.++.|+      ++++-    
T Consensus       215 FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~------~s~~E----  284 (566)
T KOG2315|consen  215 FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS------PSGRE----  284 (566)
T ss_pred             ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC------CCCCE----
Confidence            33456667778776663333 111  1         111222111       1236899999999      55544    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccc
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~  215 (351)
                      .-++.|-.-..+.|||++   +..+..+       .+++=.++-|+|.|++++.++.+   |.+-+||..+.     +++
T Consensus       285 F~VvyGfMPAkvtifnlr---~~~v~df-------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i  349 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLR---GKPVFDF-------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLI  349 (566)
T ss_pred             EEEEEecccceEEEEcCC---CCEeEeC-------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhc
Confidence            014455667889999998   4444433       23455788999999999988865   89999999884     567


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeC------CCcEEEEcCCCcc
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSH------DQTTRVFAPWKNV  255 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~------dg~i~vwd~~~~~  255 (351)
                      ..+.....  +-..|+|||++|+|++.      |+.++||++....
T Consensus       350 ~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  350 AKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             cccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            77765543  44789999999998874      7889999985543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=3e-10  Score=91.90  Aligned_cols=156  Identities=10%  Similarity=0.064  Sum_probs=113.4

Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ++.+.+-.|-+-|++++-++   .+      ...+.|.++.|...++.+..|+.+|.|..+|++........+...+. |
T Consensus       228 fs~G~sqqv~L~nvetg~~q---sf------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h  297 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ---SF------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H  297 (425)
T ss_pred             ecccccceeEEEEeeccccc---cc------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c
Confidence            44556677888888873211   11      24556888889888999999999999999999876333234444444 8


Q ss_pred             cccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          222 FAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       222 ~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      .+.|+++..-. ++++|++.+.+|.|.+||.+..++       -+.+..+.+|-..-.-+-++-.+....++++++|...
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt  370 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT  370 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------ccceeeeecccccccccccccccccceEEEccCeeEE
Confidence            88999987766 778899999999999999987762       1246777788544333333322367788999999999


Q ss_pred             EEEecC-chhhhcee
Q 048511          301 RVFEAP-LSFLKTLN  314 (351)
Q Consensus       301 ~vw~~~-~~~~~~~~  314 (351)
                      |||.+. +..+.++.
T Consensus       371 RiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  371 RIWSLDSGHLLCTIP  385 (425)
T ss_pred             EEEecccCceeeccC
Confidence            999998 77766654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.07  E-value=5.8e-08  Score=76.28  Aligned_cols=234  Identities=10%  Similarity=0.043  Sum_probs=144.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.-|...+|...+ ++ ........|...|+-+.-.   |    ...-.+..++.|.++++.++..+....        
T Consensus        90 gG~~g~fd~~~~~t-n~-~h~~~cd~snn~v~~~~r~---c----d~~~~~~i~sndht~k~~~~~~~s~~~--------  152 (344)
T KOG4532|consen   90 GGASGQFDLFACNT-ND-GHLYQCDVSNNDVTLVKRY---C----DLKFPLNIASNDHTGKTMVVSGDSNKF--------  152 (344)
T ss_pred             ccccceeeeecccC-cc-cceeeecccccchhhhhhh---c----ccccceeeccCCcceeEEEEecCcccc--------
Confidence            56677778887775 21 1222333344433322211   0    123346667888888888876543211        


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEecccccc--ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHED--WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT  159 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  159 (351)
                                                   ..|..  .+.+++++      +++++      +++.+....|-.|.+... 
T Consensus       153 -----------------------------~~h~~~~~~ns~~~s------nd~~~------~~~Vgds~~Vf~y~id~~-  190 (344)
T KOG4532|consen  153 -----------------------------AVHNQNLTQNSLHYS------NDPSW------GSSVGDSRRVFRYAIDDE-  190 (344)
T ss_pred             -----------------------------eeeccccceeeeEEc------CCCce------EEEecCCCcceEEEeCCc-
Confidence                                         11222  27788999      78898      999999999999999864 


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC--EE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD--YL  237 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l  237 (351)
                      ++.+..+...   ..+..-.+..|+.....+|++..||++.|||++.........-.+-..|.+.++.+.|++.|.  +|
T Consensus       191 sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL  267 (344)
T KOG4532|consen  191 SEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL  267 (344)
T ss_pred             cceeeeeEec---ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence            3333333322   233345688999999999999999999999998754322222233445889999999998664  34


Q ss_pred             EEEeCCCcEEEEcCCCccccccCccceEEecc----ccccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----PQVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      +..-.-+.+.|.|+++....+       .+..    +..|. ..|..-.|+.  ++.-+.+..++ .+.-|++..
T Consensus       268 f~sEhfs~~hv~D~R~~~~~q-------~I~i~~d~~~~~~tq~ifgt~f~~--~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  268 FISEHFSRVHVVDTRNYVNHQ-------VIVIPDDVERKHNTQHIFGTNFNN--ENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             EEecCcceEEEEEcccCceee-------EEecCccccccccccccccccccC--CCcccccccch-hhheeeccc
Confidence            544456889999999987432       2211    11232 2367777776  55555555444 334555543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=2.2e-09  Score=103.67  Aligned_cols=167  Identities=12%  Similarity=0.146  Sum_probs=131.5

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL  191 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  191 (351)
                      .+-..|.++.-+      |...+      .++|+.||.|++|....  +..+..++.   .+. ..++.+.|+.+|+.+.
T Consensus      2206 ~~v~~v~r~~sH------p~~~~------Yltgs~dgsv~~~~w~~--~~~v~~~rt---~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2206 HPVENVRRMTSH------PSDPY------YLTGSQDGSVRMFEWGH--GQQVVCFRT---AGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             cccCceeeecCC------CCCce------EEecCCCceEEEEeccC--CCeEEEeec---cCc-chhhhhhhcccCCcee
Confidence            344567777777      44455      89999999999999988  666666552   233 7899999999999999


Q ss_pred             EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEec
Q 048511          192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                      .+..||.+.+|....      ++....+.|......+.|-.  ..+++++   .++.+.+||..-...      .+ .+.
T Consensus      2268 i~d~dg~l~l~q~~p------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~------~s-~v~ 2332 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM------NS-LVH 2332 (2439)
T ss_pred             eeccCCceeecccCC------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc------cc-eee
Confidence            999999999998874      56777788988888888875  4566654   478999999765431      11 233


Q ss_pred             cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                        ..|.+.++++++.|  ..++|++||.+|.|.+||+. .+.+.+++.
T Consensus      2333 --~~H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred             --eecCCCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh
Confidence              68999999999999  89999999999999999988 566666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=5e-08  Score=87.35  Aligned_cols=163  Identities=15%  Similarity=0.128  Sum_probs=102.3

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .+...+....|+      ||++.      |+..+.+   ..|.+||+.+  +.... +.     .....+....|+|+|+
T Consensus       196 ~~~~~~~~p~wS------pDG~~------la~~s~~~~~~~l~~~~l~~--g~~~~-l~-----~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        196 QSREPILSPRWS------PDGKR------IAYVSFEQKRPRIFVQNLDT--GRREQ-IT-----NFEGLNGAPAWSPDGS  255 (430)
T ss_pred             cCCCceeeeeEC------CCCCE------EEEEEcCCCCCEEEEEECCC--CCEEE-cc-----CCCCCcCCeEECCCCC
Confidence            356678899999      78887      8776543   3688999987  43322 11     1222345689999999


Q ss_pred             EEEE-EeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCcc
Q 048511          189 SILA-HGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       189 ~l~~-~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~  262 (351)
                      .|+. ...++  .|++||+.++.      ...+..+........|+|||+.|+..+. ++  .|+++|+.+++.      
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~------  323 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQ------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA------  323 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCC------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE------
Confidence            8874 44444  68888988764      2333344455667889999998766553 33  577777766541      


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecC-CC--eEEEEecCchhhhce
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EK--VARVFEAPLSFLKTL  313 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~~~  313 (351)
                        ..+. .  ........+|+|  ++++|+..+. ++  .|.+||+.+...+.+
T Consensus       324 --~~lt-~--~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        324 --ERVT-F--VGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRIL  370 (430)
T ss_pred             --EEee-c--CCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence              1221 1  112234568999  8888876653 33  578888874433333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.05  E-value=4.5e-09  Score=81.98  Aligned_cols=120  Identities=17%  Similarity=0.238  Sum_probs=84.0

Q ss_pred             ceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCc
Q 048511          177 GFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       177 ~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      .|.+++-+|..+ .+++|+.||.+-+||.+...    .+...+..|+.+|+.+-|+| ++..|+++++||.+..||..+.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT  256 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccccc----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence            388899999655 66777788999999998873    67888899999999999999 5678999999999999998642


Q ss_pred             ccccc----CccceE---------Eecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          255 VASLM----GENSWH---------EVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       255 ~~~~~----~~~~~~---------~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      -....    ....|-         .+.. +......|+.+..    -|..|++|++-+.|++.+
T Consensus       257 ~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV----~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  257 FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV----LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             eEEecCccccccccccCCcccceEeeeccccccceeeeeeec----cCceEEeccccceEEEec
Confidence            21100    001111         1111 1111123555444    367899999999998875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=2.5e-07  Score=90.60  Aligned_cols=239  Identities=11%  Similarity=0.074  Sum_probs=142.9

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeec-c------------cccceeeeEeeecCCeEEecCC-ceeEEEEE-----
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQS-T------------YRKEVISLASYIEGPVLVAGSS-SYQVSVES-----  108 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~-----  108 (351)
                      ++.++++-+..+.|++||..... ...... .            .-.....+++.+++..+++++. ...++.+.     
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~  657 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET  657 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence            45677777788899999986432 211111 0            0123567888888876666443 33333222     


Q ss_pred             --ecccc-----------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          109 --LLIGH-----------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       109 --~~~~h-----------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                        .+.+-                 -.....++++|     .++.+      +++.+.++.|++||...  +... .+.-.
T Consensus       658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp-----~~g~L------yVad~~~~~I~v~d~~~--g~v~-~~~G~  723 (1057)
T PLN02919        658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP-----VNEKV------YIAMAGQHQIWEYNISD--GVTR-VFSGD  723 (1057)
T ss_pred             EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec-----CCCeE------EEEECCCCeEEEEECCC--CeEE-EEecC
Confidence              11110                 01235788884     25666      78888889999999876  4322 11100


Q ss_pred             ----ccc------ccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCc--------cccccccc--------cc
Q 048511          170 ----ELS------HSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNW--------QPQKVPSG--------HF  222 (351)
Q Consensus       170 ----~~~------~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~--------~~~~~~~~--------~~  222 (351)
                          ...      ..-.....++++|+++.|+++ ..++.|++||+.++.....        .....+-.        .-
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                000      011235679999999855554 4568999999976531100        00001100        11


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec--------cccccccceeEEEEeeeCCCcEEEEe
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--------RPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      ....+++++++|.++++-..++.|++||..++...     ......        ...+.......+++++  +|+++++-
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-----tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaD  876 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-----TLAGTGKAGFKDGKALKAQLSEPAGLALGE--NGRLFVAD  876 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-----EEeccCCcCCCCCcccccccCCceEEEEeC--CCCEEEEE
Confidence            13468899999998888888999999999776521     100000        0111223478899998  89999999


Q ss_pred             cCCCeEEEEecCch
Q 048511          295 ADEKVARVFEAPLS  308 (351)
Q Consensus       295 ~~dg~v~vw~~~~~  308 (351)
                      +.++.|++||+...
T Consensus       877 t~Nn~Irvid~~~~  890 (1057)
T PLN02919        877 TNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCEEEEEECCCC
Confidence            99999999998743

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.02  E-value=8.4e-09  Score=82.60  Aligned_cols=239  Identities=10%  Similarity=0.103  Sum_probs=148.5

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+.|+++.|.        ..|.+|+||...|.|.++.-....... .                             +...
T Consensus        26 ad~ItaVefd--------~tg~YlatGDkgGRVvlfer~~s~~ce-y-----------------------------kf~t   67 (460)
T COG5170          26 ADKITAVEFD--------ETGLYLATGDKGGRVVLFEREKSYGCE-Y-----------------------------KFFT   67 (460)
T ss_pred             cceeeEEEec--------cccceEeecCCCceEEEeecccccccc-h-----------------------------hhhh
Confidence            4679999999        889999999999999998765432110 0                             1111


Q ss_pred             ecccc------------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE-------------
Q 048511          109 LLIGH------------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM-------------  163 (351)
Q Consensus       109 ~~~~h------------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------  163 (351)
                      .+++|            ...|..+.|..      ++.    +..++..+.|.+|++|.+....-+.+             
T Consensus        68 eFQshe~EFDYLkSleieEKin~I~w~~------~t~----r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~  137 (460)
T COG5170          68 EFQSHELEFDYLKSLEIEEKINAIEWFD------DTG----RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPM  137 (460)
T ss_pred             hhcccccchhhhhhccHHHHhhheeeec------CCC----cceEEEecCCceeeeeeeecccchhhhcccccccccccc
Confidence            22333            23578888883      322    23377778999999999876311000             


Q ss_pred             -------EEEEecc----------------ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          164 -------NVVTVGE----------------LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       164 -------~~~~~~~----------------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                             +.+.+..                ...|..-|.++.|+.|...++++ .|-.|.+|++.-....  ..+..++.
T Consensus       138 ~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP  214 (460)
T COG5170         138 GGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS--FNIVDIKP  214 (460)
T ss_pred             CCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc--eEEEeccC
Confidence                   0000000                13566678899998888777654 5778999998654210  11222333


Q ss_pred             c-----cccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEe------ccccccccceeEEEEeeeCCC
Q 048511          221 H-----FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV------ARPQVHGHDINCVTIIQGKGN  288 (351)
Q Consensus       221 ~-----~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~  288 (351)
                      |     ..-|++..|+|.. ..+.-.+..|.|++-|++.........+.+...      .-+......|..+.|++  +|
T Consensus       215 ~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~--ng  292 (460)
T COG5170         215 HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD--NG  292 (460)
T ss_pred             ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC--CC
Confidence            3     2358888999954 455666778999999998543221101111111      01112234589999999  88


Q ss_pred             cEEEEecCCCeEEEEecC--chhhhceeecccccc
Q 048511          289 HRFVSGADEKVARVFEAP--LSFLKTLNHATFQES  321 (351)
Q Consensus       289 ~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~~  321 (351)
                      ++|++-+. -+|++||++  .+.++++.-|+....
T Consensus       293 ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         293 RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             cEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            88887754 489999976  778888877764433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.3e-07  Score=84.03  Aligned_cols=116  Identities=15%  Similarity=0.087  Sum_probs=73.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEee-cCCeEEEEeccCC-CcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSAS-MDKTMMIWQPEKT-TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      .....|+      |||+.      |+..+ .+|...+|.+... .+.....+.     .....+....|+|+|+.|+..+
T Consensus       283 ~~~p~wS------PDG~~------Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~~~~~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        283 QGNPSFS------PDGTR------LVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KKYRNSSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             cCCeEEC------CCCCE------EEEEECCCCCceEEEEECcccccceEEec-----cCCCCccceeECCCCCEEEEEE
Confidence            4567899      78887      66655 4665556654321 012122222     2334567789999999888765


Q ss_pred             eC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCcc
Q 048511          195 YG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNV  255 (351)
Q Consensus       195 ~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~  255 (351)
                      .+   ..|.+||+.+++.      ..+......+....|+|||+.|+..+.   ...|+++|+..++
T Consensus       346 ~~~g~~~I~v~dl~~g~~------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        346 VIKGVRQICVYDLATGRD------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             cCCCCcEEEEEECCCCCe------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            43   4799999988742      222222335677899999998765433   3568888887665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.96  E-value=4.1e-07  Score=80.03  Aligned_cols=132  Identities=11%  Similarity=0.077  Sum_probs=80.9

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      +..++.++.+..||.++  ++.+-....   ..    .....  ..+..+++++.+|.+..+|..+++.     +-....
T Consensus       244 vy~~~~~g~l~a~d~~t--G~~~W~~~~---~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~-----~W~~~~  307 (377)
T TIGR03300       244 VYAVSYQGRVAALDLRS--GRVLWKRDA---SS----YQGPA--VDDNRLYVTDADGVVVALDRRSGSE-----LWKNDE  307 (377)
T ss_pred             EEEEEcCCEEEEEECCC--CcEEEeecc---CC----ccCce--EeCCEEEEECCCCeEEEEECCCCcE-----EEcccc
Confidence            77788899999999988  554433321   01    11112  2466788888999999999988742     211111


Q ss_pred             c-cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          221 H-FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       221 ~-~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      . .........  .+..|++++.+|.|+++|..+++          .+.+...+...+..--...   ++.|+.++.||.
T Consensus       308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~----------~~~~~~~~~~~~~~sp~~~---~~~l~v~~~dG~  372 (377)
T TIGR03300       308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS----------FVARLKTDGSGIASPPVVV---GDGLLVQTRDGD  372 (377)
T ss_pred             ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC----------EEEEEEcCCCccccCCEEE---CCEEEEEeCCce
Confidence            1 111111112  35688889999999999998887          3333333433332222233   345888889999


Q ss_pred             EEEE
Q 048511          300 ARVF  303 (351)
Q Consensus       300 v~vw  303 (351)
                      |..|
T Consensus       373 l~~~  376 (377)
T TIGR03300       373 LYAF  376 (377)
T ss_pred             EEEe
Confidence            8876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=9.9e-08  Score=85.50  Aligned_cols=237  Identities=13%  Similarity=0.138  Sum_probs=155.0

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCC----CCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGE----AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~----~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ..|.|-|..+   ++.+..+.-|...|+.+.|.|.+.|.+-    ...-+||++...|.|.+||+.......        
T Consensus        35 slV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------  103 (1062)
T KOG1912|consen   35 SLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------  103 (1062)
T ss_pred             ceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------
Confidence            4566666655   4667888899999999999975433200    123477888889999999998764432        


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                 .+..|.+++..++|.|..   ++. .+      |+.-....++.+|+..+  |
T Consensus       104 ---------------------------~l~~~~~~~qdl~W~~~r---d~Srd~------LlaIh~ss~lvLwntdt--G  145 (1062)
T KOG1912|consen  104 ---------------------------WLSHSNDSVQDLCWVPAR---DDSRDV------LLAIHGSSTLVLWNTDT--G  145 (1062)
T ss_pred             ---------------------------hhcCCCcchhheeeeecc---Ccchhe------eEEecCCcEEEEEEccC--C
Confidence                                       245678899999999755   343 34      77778889999999999  5


Q ss_pred             ceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccC--cccccccccccc--------------
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDN--WQPQKVPSGHFA--------------  223 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~~~~~--------------  223 (351)
                      +..-...     .......|+.++| +.+.+..-+..|.+.+-+.-......  .+..+.-..|..              
T Consensus       146 ~k~Wk~~-----ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  146 EKFWKYD-----YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             ceeeccc-----cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence            5443332     3344566788888 66777777777877777653221100  000111111111              


Q ss_pred             -----------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511          224 -----------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       224 -----------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                                 ....++|+|.-+-++-....+.+.|+|++-..          ++.......+.+.-+.+.|......|.
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~----------~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC----------CLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc----------eeEEEEeccCCcceeEeccCCCcceEE
Confidence                       01224678865555555567889999997766          333333334445667788755678899


Q ss_pred             EecCCCeEEEEecC
Q 048511          293 SGADEKVARVFEAP  306 (351)
Q Consensus       293 s~~~dg~v~vw~~~  306 (351)
                      +.-.||.+.+|-.+
T Consensus       291 clH~nG~ltirvrk  304 (1062)
T KOG1912|consen  291 CLHSNGRLTIRVRK  304 (1062)
T ss_pred             EEecCCeEEEEEee
Confidence            99999999999754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.95  E-value=3.2e-07  Score=77.85  Aligned_cols=143  Identities=11%  Similarity=0.142  Sum_probs=105.5

Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  190 (351)
                      +|...|.-..+.      .+++-      ++.|..|| .+-|+|.+.  ++.. .+.     ..-+.|.++..+++|+++
T Consensus       357 ~~~~~VrY~r~~------~~~e~------~vigt~dgD~l~iyd~~~--~e~k-r~e-----~~lg~I~av~vs~dGK~~  416 (668)
T COG4946         357 GKKGGVRYRRIQ------VDPEG------DVIGTNDGDKLGIYDKDG--GEVK-RIE-----KDLGNIEAVKVSPDGKKV  416 (668)
T ss_pred             CCCCceEEEEEc------cCCcc------eEEeccCCceEEEEecCC--ceEE-Eee-----CCccceEEEEEcCCCcEE
Confidence            466667777777      56666      99999999 899999997  4432 222     455679999999999999


Q ss_pred             EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccceEE
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSWHE  266 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~  266 (351)
                      +++.....|.++|+.++..     ...-+...+-|+...|+|+++++|-+=-+    ..|+++|+..++.        ..
T Consensus       417 vvaNdr~el~vididngnv-----~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--------y~  483 (668)
T COG4946         417 VVANDRFELWVIDIDNGNV-----RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--------YD  483 (668)
T ss_pred             EEEcCceEEEEEEecCCCe-----eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--------EE
Confidence            9999999999999999842     22223345689999999999999977555    4799999988761        23


Q ss_pred             eccccccccceeEEEEeeeCCCcEEE
Q 048511          267 VARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                      +.++.++.   .+-+|.|  ++++|.
T Consensus       484 vTT~ta~D---fsPaFD~--d~ryLY  504 (668)
T COG4946         484 VTTPTAYD---FSPAFDP--DGRYLY  504 (668)
T ss_pred             ecCCcccc---cCcccCC--CCcEEE
Confidence            44444443   3456777  676654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=4.3e-08  Score=81.15  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceee--cccccceeeeEeeecCCeEEecC---CceeEEEEE-------eccccc
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQ--STYRKEVISLASYIEGPVLVAGS---SSYQVSVES-------LLIGHE  114 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-------~~~~h~  114 (351)
                      +++++||.+..+....++++..........  ........++.+..+.....++.   ....+.++.       ...||-
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhv  151 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHV  151 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhh
Confidence            678899988888887788876654311111  11123344555555554444433   333443333       245788


Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      .-++.++|+      +|+++      ++++..|..|++-....  .-.+..+.    .+|...|..+++-++. .|++++
T Consensus       152 Sml~dVavS------~D~~~------IitaDRDEkIRvs~ypa--~f~Iesfc----lGH~eFVS~isl~~~~-~LlS~s  212 (390)
T KOG3914|consen  152 SMLLDVAVS------PDDQF------IITADRDEKIRVSRYPA--TFVIESFC----LGHKEFVSTISLTDNY-LLLSGS  212 (390)
T ss_pred             hhhheeeec------CCCCE------EEEecCCceEEEEecCc--ccchhhhc----cccHhheeeeeeccCc-eeeecC
Confidence            899999999      78899      99999999999988765  44444444    3788899999987654 499999


Q ss_pred             eCCeEEEEEcccCc
Q 048511          195 YGGAFHLWRNVGVD  208 (351)
Q Consensus       195 ~dg~i~~~d~~~~~  208 (351)
                      .|++|++||+.+++
T Consensus       213 GD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  213 GDKTLRLWDITSGK  226 (390)
T ss_pred             CCCcEEEEecccCC
Confidence            99999999999984

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.93  E-value=8.5e-07  Score=70.74  Aligned_cols=181  Identities=9%  Similarity=0.048  Sum_probs=112.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCC------C
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPD------G  187 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~------~  187 (351)
                      .-..++|+      +|+.+      ||.+...|+|+++|+..   ..+..+....  .......|..+.|-+.      .
T Consensus        45 QWRkl~WS------pD~tl------La~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws  109 (282)
T PF15492_consen   45 QWRKLAWS------PDCTL------LAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWS  109 (282)
T ss_pred             hheEEEEC------CCCcE------EEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccccccccc
Confidence            35679999      79999      99999999999999984   3333333211  1122345666666542      2


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccc--c-ccccEEEEEeecCCCEEEEEeC-CC----------cEEEEcCCC
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--G-HFAAVMDISWSRSSDYLLSVSH-DQ----------TTRVFAPWK  253 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~-~~~~v~~v~~sp~~~~l~s~~~-dg----------~i~vwd~~~  253 (351)
                      ..|++-..+|.++-|-+..+....++....+.  . +...|.++.++|..++|+.|+. ..          -+.-|.+-+
T Consensus       110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS  189 (282)
T ss_pred             eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC
Confidence            25777788898888877543222233333322  2 3668999999999988877653 11          356676544


Q ss_pred             cccccc-----------Cc--cceEEecc------ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          254 NVASLM-----------GE--NSWHEVAR------PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       254 ~~~~~~-----------~~--~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      +..-..           ..  ..+..+..      .......|..|..+|  |+.+||+...+|.|.+|+++ -...+..
T Consensus       190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP--dg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP--DGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC--CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            321100           00  00011111      111234589999999  99999999999999999988 4444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.92  E-value=6.6e-09  Score=58.51  Aligned_cols=38  Identities=32%  Similarity=0.527  Sum_probs=35.8

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      +++.++.+|.+.|++|+|+        +++.+|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~--------~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWS--------PDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEE--------TTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEe--------cccccceeeCCCCEEEEEC
Confidence            5678999999999999999        8899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.92  E-value=3e-06  Score=72.10  Aligned_cols=224  Identities=7%  Similarity=0.028  Sum_probs=130.0

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEee-C-CCcEEEEecCCCcccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSS-Q-DKVIRIWKLALRGSSA   73 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~-dg~i~iwd~~~~~~~~   73 (351)
                      -.+..|.+||+.+ .+  .+..+.--       ...-..++++        ++|++|+... . +..|.+.|+.+++.+.
T Consensus        74 ~~~d~V~v~D~~t-~~--~~~~i~~p~~p~~~~~~~~~~~~ls--------~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        74 KRTDYVEVIDPQT-HL--PIADIELPEGPRFLVGTYPWMTSLT--------PDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCCEEEEEECcc-Cc--EEeEEccCCCchhhccCccceEEEC--------CCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence            3678999999998 63  34444321       1123467888        8899988765 3 7899999999988877


Q ss_pred             eeecccccc------eeeeEeeecCCeEEecC-CceeEEEEEe--ccccccceEE-EEecCCCCCCCCCcccCCCceeEE
Q 048511           74 NTQSTYRKE------VISLASYIEGPVLVAGS-SSYQVSVESL--LIGHEDWVYS-VQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        74 ~~~~~~~~~------~~~~~~~~~~~~l~~~~-~~~~~~~~~~--~~~h~~~v~~-l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      .+..+....      ...+..+.||..+.... .++.......  +.+...++.. -.|.+     .++..      +..
T Consensus       143 ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-----~dg~~------~~v  211 (352)
T TIGR02658       143 MMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-----KSGRL------VWP  211 (352)
T ss_pred             EEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-----CCCcE------EEE
Confidence            665432111      11122334444433211 1121111111  1110111100 02332     36665      555


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEe---ccc--cccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCc
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTV---GEL--SHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVD  208 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~---~~~--~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~  208 (351)
                      ... |+|.+.|+....-.....+..   ...  .-....+.-++++|+++.+++...          .+.|.++|..+. 
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-  289 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-  289 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-
Confidence            555 999999975422111111211   110  112334445999999998888531          257999999886 


Q ss_pred             ccCcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV  255 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~  255 (351)
                          +.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++
T Consensus       290 ----kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       290 ----KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             ----eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence                34555442 34789999999999 777666 57889999998886

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.92  E-value=8.3e-07  Score=78.11  Aligned_cols=265  Identities=11%  Similarity=0.065  Sum_probs=139.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.+|.|..+|..+ |+.  +....-.........          .++..++.++.++.+..+|..+++.........  
T Consensus        71 ~~~~g~v~a~d~~t-G~~--~W~~~~~~~~~~~p~----------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--  135 (377)
T TIGR03300        71 ADADGTVVALDAET-GKR--LWRVDLDERLSGGVG----------ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--  135 (377)
T ss_pred             ECCCCeEEEEEccC-CcE--eeeecCCCCcccceE----------EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--
Confidence            45678888888877 643  333222221111122          236678888889999999998888765543221  


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCC--------CCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPP--------STAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ...+.... .+..++++..++.+..+....+..  ++.......        ... -.+..      ++.+..++.+..+
T Consensus       136 ~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~~~~~~~~~~sp~-~~~~~------v~~~~~~g~v~al  205 (377)
T TIGR03300       136 EVLSPPLV-ANGLVVVRTNDGRLTALDAATGER--LWTYSRVTPALTLRGSASPV-IADGG------VLVGFAGGKLVAL  205 (377)
T ss_pred             eeecCCEE-ECCEEEEECCCCeEEEEEcCCCce--eeEEccCCCceeecCCCCCE-EECCE------EEEECCCCEEEEE
Confidence            11111111 233444444455554443322211  111111000        000 01123      6778888999999


Q ss_pred             eccCCCcceEEEEEeccccccc--cceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          154 QPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |+++  +..+-...........  .....+.-+|  .+..+++++.+|.++.||..+++.     +-... ... .....
T Consensus       206 d~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-----~W~~~-~~~-~~~p~  276 (377)
T TIGR03300       206 DLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-----LWKRD-ASS-YQGPA  276 (377)
T ss_pred             EccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-----EEeec-cCC-ccCce
Confidence            9988  5443322211100000  0000010011  355788888999999999988742     22111 111 11112


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS  308 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~  308 (351)
                        ..+..++.++.||.+..+|..+++      ..|+.. ..  ..........    .+..|++++.+|.|+++|.. ++
T Consensus       277 --~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~-~~--~~~~~ssp~i----~g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       277 --VDDNRLYVTDADGVVVALDRRSGS------ELWKND-EL--KYRQLTAPAV----VGGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             --EeCCEEEEECCCCeEEEEECCCCc------EEEccc-cc--cCCccccCEE----ECCEEEEEeCCCEEEEEECCCCC
Confidence              245677778899999999998886      233321 11  1111222222    25688889999999999986 77


Q ss_pred             hhhceee
Q 048511          309 FLKTLNH  315 (351)
Q Consensus       309 ~~~~~~~  315 (351)
                      .+.+++.
T Consensus       342 ~~~~~~~  348 (377)
T TIGR03300       342 FVARLKT  348 (377)
T ss_pred             EEEEEEc
Confidence            7766653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.6e-08  Score=83.65  Aligned_cols=227  Identities=13%  Similarity=0.091  Sum_probs=153.7

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (351)
                      -|.+.|+.+...         -.+++.+++.||.++.|.-..-.-                                +..
T Consensus         7 mhrd~i~hv~~t---------ka~fiiqASlDGh~KFWkKs~isG--------------------------------vEf   45 (558)
T KOG0882|consen    7 MHRDVITHVFPT---------KAKFIIQASLDGHKKFWKKSRISG--------------------------------VEF   45 (558)
T ss_pred             cccceeeeEeee---------hhheEEeeecchhhhhcCCCCccc--------------------------------eee
Confidence            378888887665         467999999999999997543111                                123


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      +..+..|...|.+++.+      -++.+      +.|.+. |..++++|++.  -..+..+++..+++.   + +...++
T Consensus        46 VKhFraHL~~I~sl~~S------~dg~L------~~Sv~d~Dhs~KvfDvEn--~DminmiKL~~lPg~---a-~wv~sk  107 (558)
T KOG0882|consen   46 VKHFRAHLGVILSLAVS------YDGWL------FRSVEDPDHSVKVFDVEN--FDMINMIKLVDLPGF---A-EWVTSK  107 (558)
T ss_pred             hhhhHHHHHHHHhhhcc------cccee------EeeccCcccceeEEEeec--cchhhhcccccCCCc---e-EEecCC
Confidence            34466788889999999      78888      999777 99999999997  333333333222221   1 112222


Q ss_pred             CC--CEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511          186 DG--RSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       186 ~~--~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  262 (351)
                      ..  ..++++. .++.+.++|-.....   +....-.-|..+|..+.++|.+..+++....|.|.-|.....-.-+....
T Consensus       108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l  184 (558)
T KOG0882|consen  108 GDKISLIAVSLFKSGKIFVVDGFGDFC---QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNL  184 (558)
T ss_pred             CCeeeeEEeecccCCCcEEECCcCCcC---ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccc
Confidence            21  1344433 569999999876532   33444556899999999999999999999899999999873110000011


Q ss_pred             ceEE-----eccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          263 SWHE-----VARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       263 ~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      .|..     +..+.-......++.|+|  ++..+.+-+.|..||++... |+.++.+....
T Consensus       185 ~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  185 NFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             cccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence            2211     111112234478999999  99999999999999999987 77777776543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=3.2e-07  Score=82.16  Aligned_cols=160  Identities=13%  Similarity=0.080  Sum_probs=97.4

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      +...+.+..|+      ||++.      |+..+.+   ..|.+||+.+  +.... +.  .   ........+|+|+|+.
T Consensus       216 ~~~~~~~p~wS------PDG~~------La~~s~~~g~~~L~~~dl~t--g~~~~-lt--~---~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        216 SPEPLMSPAWS------PDGRK------LAYVSFENRKAEIFVQDIYT--QVREK-VT--S---FPGINGAPRFSPDGKK  275 (448)
T ss_pred             CCCcccCceEC------CCCCE------EEEEEecCCCcEEEEEECCC--CCeEE-ec--C---CCCCcCCeeECCCCCE
Confidence            45678889999      78887      7766543   2588889887  43221 11  1   1122346799999997


Q ss_pred             EEE-EeeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccc
Q 048511          190 ILA-HGYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       190 l~~-~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~  263 (351)
                      |+. ...++.  |+++|+.+++      ...+..+.......+|+|||+.|+..+. ++  .|+++|+.+++.       
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------  342 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKA------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------  342 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCC------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------
Confidence            765 455564  7777887753      2334444455677899999998876553 34  466667765541       


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecC-CC--eEEEEecCchhhh
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EK--VARVFEAPLSFLK  311 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~v~vw~~~~~~~~  311 (351)
                       ..+. .  ........+|+|  |+++|+..+. ++  .|.++|+.+...+
T Consensus       343 -~~Lt-~--~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        343 -SRLT-F--EGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             -EEEe-c--CCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeE
Confidence             1221 1  122234568999  8888776554 44  3455666643333

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=1.8e-06  Score=84.77  Aligned_cols=202  Identities=10%  Similarity=0.061  Sum_probs=120.3

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeec---------------ccccceeeeEeeec-CCe
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQS---------------TYRKEVISLASYIE-GPV   94 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~   94 (351)
                      ...|++.        ++++.|+.+. ..+.|+++|+.++........               ..-.....++++++ +.+
T Consensus       626 P~GIavd--------~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L  697 (1057)
T PLN02919        626 PQGLAYN--------AKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV  697 (1057)
T ss_pred             CcEEEEe--------CCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE
Confidence            5778888        6676665554 457799999876532111000               00123457888884 445


Q ss_pred             EEecCCceeEEEEEe-------ccc---------c------ccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEE
Q 048511           95 LVAGSSSYQVSVESL-------LIG---------H------EDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMM  151 (351)
Q Consensus        95 l~~~~~~~~~~~~~~-------~~~---------h------~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~  151 (351)
                      +++...+..+..+..       +.+         +      -.....++++      +++. +      +++-+.++.|+
T Consensus       698 yVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavs------pdG~~L------YVADs~n~~Ir  765 (1057)
T PLN02919        698 YIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLS------PDLKEL------YIADSESSSIR  765 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEe------CCCCEE------EEEECCCCeEE
Confidence            555444444433321       110         0      1234568888      6666 5      66667789999


Q ss_pred             EEeccCCCcceEEEE-----------Eeccccc-----cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          152 IWQPEKTTGIWMNVV-----------TVGELSH-----SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       152 iwd~~~~~~~~~~~~-----------~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      +||+.+  +......           ......+     .-.....++++++|+.+++-..+++|++||..++......-.
T Consensus       766 v~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        766 ALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            999986  3221100           0000000     011245889999999888888899999999977532100000


Q ss_pred             --------cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          216 --------KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       216 --------~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                              ....+.-.....|+++++|+++++-+.++.|++||+.++.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence                    0011222357889999999988888889999999998875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=4.9e-09  Score=59.04  Aligned_cols=38  Identities=32%  Similarity=0.514  Sum_probs=35.7

Q ss_pred             ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      +++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.79  E-value=6e-06  Score=79.73  Aligned_cols=271  Identities=13%  Similarity=0.131  Sum_probs=160.4

Q ss_pred             CCCCceEEEE----EccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC----CCccc-
Q 048511            2 GGLDNKIHLY----RGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA----LRGSS-   72 (351)
Q Consensus         2 g~~dg~i~vw----~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~----~~~~~-   72 (351)
                      +..+|.|.+.    +... ...+.+..+   ...|.+++|+        ||+..|+....+++|.+..-.    ....+ 
T Consensus        93 ~~~~Gdi~~~~~~~~~~~-~~~E~VG~v---d~GI~a~~WS--------PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~  160 (928)
T PF04762_consen   93 ALASGDIILVREDPDPDE-DEIEIVGSV---DSGILAASWS--------PDEELLALVTGEGNLLLMTRDFDPISEVPLD  160 (928)
T ss_pred             EECCceEEEEEccCCCCC-ceeEEEEEE---cCcEEEEEEC--------CCcCEEEEEeCCCEEEEEeccceEEEEeecC
Confidence            3457888888    5555 444444443   5689999999        889999999888888775321    00000 


Q ss_pred             -------------------c--------------eeecc--------cccceeeeEeeecCCeEEecCC------ceeEE
Q 048511           73 -------------------A--------------NTQST--------YRKEVISLASYIEGPVLVAGSS------SYQVS  105 (351)
Q Consensus        73 -------------------~--------------~~~~~--------~~~~~~~~~~~~~~~~l~~~~~------~~~~~  105 (351)
                                         +              ....+        .......+.|..||.++++..-      ...++
T Consensus       161 ~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iR  240 (928)
T PF04762_consen  161 SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIR  240 (928)
T ss_pred             ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEE
Confidence                               0              00000        1224557789999999998543      22333


Q ss_pred             EEEe---ccccccce----EEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          106 VESL---LIGHEDWV----YSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       106 ~~~~---~~~h~~~v----~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      ++..   +..-..+|    .+++|-      |.|++      +|+...   ...|.+|.-.   |.....+.+.. ....
T Consensus       241 Vy~ReG~L~stSE~v~gLe~~l~Wr------PsG~l------IA~~q~~~~~~~VvFfErN---GLrhgeF~l~~-~~~~  304 (928)
T PF04762_consen  241 VYSREGELQSTSEPVDGLEGALSWR------PSGNL------IASSQRLPDRHDVVFFERN---GLRHGEFTLRF-DPEE  304 (928)
T ss_pred             EECCCceEEeccccCCCccCCccCC------CCCCE------EEEEEEcCCCcEEEEEecC---CcEeeeEecCC-CCCC
Confidence            3322   11112222    467888      78888      888765   3456666544   54444555432 2345


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEEeecCC-CEEEEEeCCCcEEEEcCC-
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDISWSRSS-DYLLSVSHDQTTRVFAPW-  252 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~-  252 (351)
                      ..|..+.|++++..||....|. |.+|-..+-.   |-+.+.+.-. ...+..+.|+|.. ..|...+.+|.+..+++. 
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH---WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~  380 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH---WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW  380 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE---EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence            6789999999999999977655 9999876643   3333444322 2234558999854 346666665666554432 


Q ss_pred             ---Ccccccc----------Cc-cceEEe-----cccc-----ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          253 ---KNVASLM----------GE-NSWHEV-----ARPQ-----VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       253 ---~~~~~~~----------~~-~~~~~~-----~~~~-----~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                         .......          +. -...++     ..+.     ....+|.+++|++  ++..+++-..||.|.+|...
T Consensus       381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~--~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP--SNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC--CCCeEEEEECCCCEEEEEec
Confidence               1110000          00 000000     0000     1235699999999  67779999999999999855

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.77  E-value=7.5e-06  Score=70.33  Aligned_cols=253  Identities=10%  Similarity=0.079  Sum_probs=153.7

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCc--ee-EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce-eecccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDW--IR-SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN-TQSTYR   80 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~   80 (351)
                      ++.+.|||..+ +  ..+..+..-..+  .+ -+.|+        .+..++|-.. ...+.|+++ +...... ......
T Consensus       107 ~n~~~vwd~~s-g--~iv~sf~~~~q~~~~Wp~~k~s--------~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~  173 (561)
T COG5354         107 KNNVFVWDIAS-G--MIVFSFNGISQPYLGWPVLKFS--------IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRP  173 (561)
T ss_pred             cCceeEEeccC-c--eeEeeccccCCcccccceeeee--------ecchhhhhhc-cCeEEEEec-CCccccCchhhccc
Confidence            45799999999 7  456666655555  56 68888        7777777553 346999997 3332211 111113


Q ss_pred             cceeeeEeeecC--CeEEe-----cCCceeEEEEEeccc-----cc---cceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           81 KEVISLASYIEG--PVLVA-----GSSSYQVSVESLLIG-----HE---DWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        81 ~~~~~~~~~~~~--~~l~~-----~~~~~~~~~~~~~~~-----h~---~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      ..+....++|.+  ..|+.     .+....+.++..-..     |+   ..=..+.|.      ..|++      |+.--
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~------~~g~~------ll~l~  241 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ------VLGKY------LLVLV  241 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe------cCCce------EEEEE
Confidence            466677777753  23343     223333333332111     10   011246676      45554      33211


Q ss_pred             -----------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCc
Q 048511          146 -----------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       146 -----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~  212 (351)
                                 ....+.|++++.  ..    +++.  ....++|...+|.|.++.+++.+  .+-.+.++|++.+     
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e--~~----i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----  308 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITE--RS----IPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----  308 (561)
T ss_pred             EEeeecccceeccceEEEEeecc--cc----ccee--ccccccceeeeecccCCceeEEecccccceeecccccc-----
Confidence                       124577777764  21    1111  03467899999999888766544  6788999999885     


Q ss_pred             ccccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                       ....+  ....=..+.|+|.+++++.++-|   |.+-+||...+.         ..+..+.+.+  .+-+.|+|  |++
T Consensus       309 -l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf---------~~~~~~~~~n--~s~~~wsp--d~q  372 (561)
T COG5354         309 -LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF---------KVAGAFNGLN--TSYCDWSP--DGQ  372 (561)
T ss_pred             -eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce---------EEEEEeecCC--ceEeeccC--Cce
Confidence             22222  23334567899999999887754   789999987664         2343443333  45678999  888


Q ss_pred             EEEEec------CCCeEEEEecCchhhh
Q 048511          290 RFVSGA------DEKVARVFEAPLSFLK  311 (351)
Q Consensus       290 ~l~s~~------~dg~v~vw~~~~~~~~  311 (351)
                      ++.+..      .|..|+|||+.+....
T Consensus       373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             EEEecCCCcccccCcceEEEEecCchhh
Confidence            887654      4778999998865544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=3.2e-08  Score=80.42  Aligned_cols=122  Identities=11%  Similarity=0.118  Sum_probs=92.2

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC---CcceEEEEEeccccccccceEEEEEcC-CCCE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT---TGIWMNVVTVGELSHSALGFYGGHWSP-DGRS  189 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~  189 (351)
                      .+.|.+++|.      ..+++      +..|...|.|..+|++..   .+.+...+      .|...|+++..-. ++++
T Consensus       252 ksDVfAlQf~------~s~nL------v~~GcRngeI~~iDLR~rnqG~~~~a~rl------yh~Ssvtslq~Lq~s~q~  313 (425)
T KOG2695|consen  252 KSDVFALQFA------GSDNL------VFNGCRNGEIFVIDLRCRNQGNGWCAQRL------YHDSSVTSLQILQFSQQK  313 (425)
T ss_pred             chhHHHHHhc------ccCCe------eEecccCCcEEEEEeeecccCCCcceEEE------EcCcchhhhhhhccccce
Confidence            4567788888      66777      999999999999999973   12233333      5777888887666 7889


Q ss_pred             EEEEeeCCeEEEEEcccCcccCcccccccccccccEEE--EEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD--ISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~--v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |++.+.+|+|.+||++.-+.+  +-+.++.+|...-.-  +-..+....++++++|...|||.+..+.
T Consensus       314 LmaS~M~gkikLyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  314 LMASDMTGKIKLYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             EeeccCcCceeEeeehhhhcc--cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            999999999999999875321  237778888543222  3345667788899999999999998886

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.76  E-value=1.4e-05  Score=65.79  Aligned_cols=202  Identities=11%  Similarity=0.014  Sum_probs=122.3

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST  127 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~  127 (351)
                      ++.++++--..+.|..|+..++.... .                                   .  ......+.+..   
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~-----------------------------------~--~~~~~G~~~~~---   49 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV-I-----------------------------------D--LPGPNGMAFDR---   49 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE-E-----------------------------------E--SSSEEEEEEEC---
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE-E-----------------------------------e--cCCCceEEEEc---
Confidence            67777777778889999887654321 0                                   1  11155666662   


Q ss_pred             CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--------CeE
Q 048511          128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--------GAF  199 (351)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i  199 (351)
                        +++.       |+.+...+ +.++|+.+  ++...................+++.|+|++.++....        |.|
T Consensus        50 --~~g~-------l~v~~~~~-~~~~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   50 --PDGR-------LYVADSGG-IAVVDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             --TTSE-------EEEEETTC-EEEEETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             --cCCE-------EEEEEcCc-eEEEecCC--CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence              3444       55555554 55669887  5444333321111144567899999999976665543        556


Q ss_pred             EEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEecccccccccee
Q 048511          200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN  278 (351)
Q Consensus       200 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (351)
                      ..++.. ++      +..+...-...+.|+|+|+++.|+ +-+..+.|..|++.......   ...+.+..+.......-
T Consensus       118 ~~~~~~-~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~g~pD  187 (246)
T PF08450_consen  118 YRIDPD-GK------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL---SNRRVFIDFPGGPGYPD  187 (246)
T ss_dssp             EEEETT-SE------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE---EEEEEEEE-SSSSCEEE
T ss_pred             EEECCC-Ce------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce---eeeeeEEEcCCCCcCCC
Confidence            666666 32      222222345578999999998775 55667889999986443100   01112222222223467


Q ss_pred             EEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          279 CVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                      .+++..  +|++.++....+.|.+++.+|+.+..+.
T Consensus       188 G~~vD~--~G~l~va~~~~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  188 GLAVDS--DGNLWVADWGGGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             EEEEBT--TS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred             cceEcC--CCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence            889988  8998888888999999999988766654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.74  E-value=2.9e-05  Score=66.37  Aligned_cols=160  Identities=11%  Similarity=0.026  Sum_probs=116.2

Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCc
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVD  208 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~  208 (351)
                      .+|.+      ++..|. |.+-|.+.-.  +..+   ++    ++...|.-..+..+++-++.|..|| .+-+||.++++
T Consensus       330 ~~Gd~------ia~VSR-GkaFi~~~~~--~~~i---qv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e  393 (668)
T COG4946         330 VNGDY------IALVSR-GKAFIMRPWD--GYSI---QV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE  393 (668)
T ss_pred             CCCcE------EEEEec-CcEEEECCCC--CeeE---Ec----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce
Confidence            46676      777765 4555655544  3322   22    4556688778888888899999998 89999999974


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN  288 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (351)
                            ++.+...-+.|.++..+|+|++++.+.....|.+.|+.++..        +.+.  +....-|+.++|+|  ++
T Consensus       394 ------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv--------~~id--kS~~~lItdf~~~~--ns  455 (668)
T COG4946         394 ------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV--------RLID--KSEYGLITDFDWHP--NS  455 (668)
T ss_pred             ------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe--------eEec--ccccceeEEEEEcC--Cc
Confidence                  556666778899999999999999998889999999998872        1221  22334599999999  99


Q ss_pred             cEEEEecCCC----eEEEEecCchhhhceeeccccccch
Q 048511          289 HRFVSGADEK----VARVFEAPLSFLKTLNHATFQESSF  323 (351)
Q Consensus       289 ~~l~s~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~  323 (351)
                      ++||-+--+|    .|+++|+.+..+..........-.+
T Consensus       456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP  494 (668)
T COG4946         456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP  494 (668)
T ss_pred             eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc
Confidence            9999877665    6899999865454444444444333

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=1.1e-05  Score=66.15  Aligned_cols=220  Identities=8%  Similarity=-0.067  Sum_probs=123.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeec--CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGH--TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      .+|+|..||..+ |+  .+....--  .....+..+         .++..+++++.++.|..||..+++.+.......  
T Consensus         1 ~~g~l~~~d~~t-G~--~~W~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--   66 (238)
T PF13360_consen    1 DDGTLSALDPRT-GK--ELWSYDLGPGIGGPVATAV---------PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--   66 (238)
T ss_dssp             -TSEEEEEETTT-TE--EEEEEECSSSCSSEEETEE---------EETTEEEEEETTSEEEEEETTTSEEEEEEECSS--
T ss_pred             CCCEEEEEECCC-CC--EEEEEECCCCCCCccceEE---------EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--
Confidence            378999999988 74  34443310  112221122         246678888899999999999887655443210  


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                    .....   ..        .++..      ++.+..++.++.+|.++  ++
T Consensus        67 ------------------------------~~~~~---~~--------~~~~~------v~v~~~~~~l~~~d~~t--G~   97 (238)
T PF13360_consen   67 ------------------------------PISGA---PV--------VDGGR------VYVGTSDGSLYALDAKT--GK   97 (238)
T ss_dssp             ------------------------------CGGSG---EE--------EETTE------EEEEETTSEEEEEETTT--SC
T ss_pred             ------------------------------cccce---ee--------ecccc------cccccceeeeEecccCC--cc
Confidence                                          00111   11        12333      66666888999999888  66


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc----------cEEEEEee
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA----------AVMDISWS  231 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~----------~v~~v~~s  231 (351)
                      .+-........... ..........+..++++..++.|..+|+++++.     +........          .+..-...
T Consensus        98 ~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~~~~~~~~~~  171 (238)
T PF13360_consen   98 VLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-----LWKYPVGEPRGSSPISSFSDINGSPVI  171 (238)
T ss_dssp             EEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEE-----EEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred             eeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcE-----EEEeecCCCCCCcceeeecccccceEE
Confidence            65553211111111 122223333477888888899999999998853     222221111          11122222


Q ss_pred             cCCCEEEEEeCCCc-EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511          232 RSSDYLLSVSHDQT-TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF  309 (351)
Q Consensus       232 p~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~  309 (351)
                      .++ .++.++.++. +.+ |+.+++      ..|...  +.    .+..+ ...  .+..|+.++.++.|..||+. ++.
T Consensus       172 ~~~-~v~~~~~~g~~~~~-d~~tg~------~~w~~~--~~----~~~~~-~~~--~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  172 SDG-RVYVSSGDGRVVAV-DLATGE------KLWSKP--IS----GIYSL-PSV--DGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             CTT-EEEEECCTSSEEEE-ETTTTE------EEEEEC--SS-----ECEC-EEC--CCTEEEEEETTTEEEEEETTTTEE
T ss_pred             ECC-EEEEEcCCCeEEEE-ECCCCC------EEEEec--CC----CccCC-cee--eCCEEEEEeCCCEEEEEECCCCCE
Confidence            244 6666677775 555 998887      234221  11    12221 223  56777777799999999987 543

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.6e-05  Score=69.05  Aligned_cols=198  Identities=9%  Similarity=0.024  Sum_probs=113.6

Q ss_pred             ceeEEEeeCCcccCCCCCccE-EEEeeCC---CcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511           31 WIRSLDFSLPVCTSGEAISIL-LVSSSQD---KVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~-l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (351)
                      .+..-.|+        |+++. ++..+.+   ..|.++|+.+++....                                
T Consensus       189 ~~~~p~wS--------pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------------------------------  228 (419)
T PRK04043        189 LNIFPKWA--------NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------------------------------  228 (419)
T ss_pred             CeEeEEEC--------CCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------------------------------
Confidence            66788899        77874 5544433   4577778766543211                                


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecC--CeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMD--KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                          ....+......|+      ||++.      ++ +.+.+  ..|.++|+..  +... .+.     ..........|
T Consensus       229 ----t~~~g~~~~~~~S------PDG~~------la~~~~~~g~~~Iy~~dl~~--g~~~-~LT-----~~~~~d~~p~~  284 (419)
T PRK04043        229 ----ASSQGMLVVSDVS------KDGSK------LLLTMAPKGQPDIYLYDTNT--KTLT-QIT-----NYPGIDVNGNF  284 (419)
T ss_pred             ----ecCCCcEEeeEEC------CCCCE------EEEEEccCCCcEEEEEECCC--CcEE-Ecc-----cCCCccCccEE
Confidence                1123345566788      67765      44 34333  4677778776  4322 222     11212234579


Q ss_pred             cCCCCEEEEEee-CC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---------CcEEEEcC
Q 048511          184 SPDGRSILAHGY-GG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---------QTTRVFAP  251 (351)
Q Consensus       184 ~~~~~~l~~~~~-dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---------g~i~vwd~  251 (351)
                      +|||+.|+-.+. .+  .|.++|+.+++..    ..+..+.  .  ...|+|+|++|+..+..         ..|.+.|+
T Consensus       285 SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----rlt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        285 VEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----QVVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCeE----eCccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence            999987766553 33  5777787776421    1111111  1  24899999988766543         36788888


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC---CeEEEEecCchhhhcee
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE---KVARVFEAPLSFLKTLN  314 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~v~vw~~~~~~~~~~~  314 (351)
                      ..+..        +.+...    .......|+|  ||+.|+-.+.+   ..+.+.++.+.....+.
T Consensus       357 ~~g~~--------~~LT~~----~~~~~p~~SP--DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        357 NSDYI--------RRLTAN----GVNQFPRFSS--DGGSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CCCCe--------EECCCC----CCcCCeEECC--CCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            76651        222221    1223578999  88877655432   24666777776665554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.69  E-value=5.5e-06  Score=78.30  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=144.9

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+.|.++.|.        .+..-++.+..+|.|.+-|..+...  .........+.++.|+||+..++.......+.+..
T Consensus        68 d~~i~s~~fl--------~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFL--------ADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEe--------cccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            3589999999        7777888888889998887765533  23333356888999999999888765544332111


Q ss_pred             -------------------------------ecccc---------------------ccceEEEEecCCCCCCCCCcccC
Q 048511          109 -------------------------------LLIGH---------------------EDWVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus       109 -------------------------------~~~~h---------------------~~~v~~l~~~p~~~~~~~~~~~~  136 (351)
                                                     .+.|.                     .+.=+++.|-      .||++  
T Consensus       138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR------gDg~~--  209 (1265)
T KOG1920|consen  138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR------GDGEY--  209 (1265)
T ss_pred             ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc------cCCcE--
Confidence                                           01110                     0112347888      78888  


Q ss_pred             CCceeEEee-----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCc
Q 048511          137 QPSSILSAS-----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVD  208 (351)
Q Consensus       137 ~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~  208 (351)
                          +|+..     ..+.|++||-+.   ..-..-.     .....-.+++|-|.|..+++-.   .|+.|.+|..+.-+
T Consensus       210 ----fAVs~~~~~~~~RkirV~drEg---~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  210 ----FAVSFVESETGTRKIRVYDREG---ALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ----EEEEEEeccCCceeEEEecccc---hhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence                88732     237899999772   1111111     1222335799999999888754   45679999876654


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEE---EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLS---VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ...+...  +......|..++|+.++..|++   ......|++|-+.+.        .|.............  +.|+|.
T Consensus       278 hg~f~l~--~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny--------hWYLKq~l~~~~~~~--~~W~p~  345 (1265)
T KOG1920|consen  278 HGEFVLP--FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY--------HWYLKQELQFSQKAL--LMWDPV  345 (1265)
T ss_pred             ccccccC--CcccccchheeeecCCCCceeeeecccccceEEEEEecCe--------EEEEEEEEecccccc--ccccCC
Confidence            4333222  2223344899999999999987   444556999988665        355554444433333  677774


Q ss_pred             CCCcEEEEecCCCeEEEEe
Q 048511          286 KGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~  304 (351)
                      ....+.+.+ .+|...+++
T Consensus       346 ~~~~L~v~~-~sG~~~v~~  363 (1265)
T KOG1920|consen  346 TEKTLHVLR-ESGQRLVRD  363 (1265)
T ss_pred             CceeEEEEe-cCCcEEEEE
Confidence            333333443 555555544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.8e-07  Score=77.65  Aligned_cols=234  Identities=14%  Similarity=0.101  Sum_probs=148.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +++.||.++.|......-...+..+.+|.+.|.+++.+        -++-++.|.+. |..++++|+.+......+....
T Consensus        25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--------~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~   96 (558)
T KOG0882|consen   25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--------YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD   96 (558)
T ss_pred             eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--------ccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence            47889999999765411134566778899999999999        88999999777 9999999998766553333322


Q ss_pred             ccceeeeEeeec-------------CCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           80 RKEVISLASYIE-------------GPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        80 ~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      -+....+..++.             +...+.............-.-|..+|.++.++      +.+..      +++...
T Consensus        97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~------qa~Ds------~vSiD~  164 (558)
T KOG0882|consen   97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN------QAGDS------AVSIDI  164 (558)
T ss_pred             CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee------ccccc------eeeccc
Confidence            222222222222             22222211111112222234588999999999      67777      899988


Q ss_pred             CCeEEEEeccC----CCcceEEEE----EeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC-------
Q 048511          147 DKTMMIWQPEK----TTGIWMNVV----TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN-------  211 (351)
Q Consensus       147 d~~i~iwd~~~----~~~~~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------  211 (351)
                      .|.|.-|....    .+......+    .+...........++.|+|++..+.+-+.|..|+++++.+++...       
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t  244 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT  244 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence            99999999873    001111011    111123345567899999999999999999999999998874310       


Q ss_pred             ---ccc-----------------ccccccccc-cEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          212 ---WQP-----------------QKVPSGHFA-AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       212 ---~~~-----------------~~~~~~~~~-~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                         +++                 .+.+..|.. .-+.+.|...+++|+-++.=| |+|.++.++.
T Consensus       245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~  308 (558)
T KOG0882|consen  245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT  308 (558)
T ss_pred             hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence               000                 001111222 234577888899988776543 6777776665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.66  E-value=1.2e-05  Score=64.34  Aligned_cols=179  Identities=13%  Similarity=0.092  Sum_probs=109.9

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI  111 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (351)
                      =.-++|+        +++.+||.+...|+|+++|+..... ..+....       .+                     ..
T Consensus        46 WRkl~WS--------pD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~-------~~---------------------~~   88 (282)
T PF15492_consen   46 WRKLAWS--------PDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM-------SF---------------------PG   88 (282)
T ss_pred             heEEEEC--------CCCcEEEEEcCCCeEEEEeccccee-EEcCccc-------cc---------------------CC
Confidence            4678999        8899999999999999999975332 2121100       00                     00


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC---CCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK---TTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .-...|..+.|.+....+.-...      |+.-..+|.++-|-+..   .+......+.+  .......|.++.++|..+
T Consensus        89 d~~~Aiagl~Fl~~~~s~~ws~E------Llvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf--~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   89 DLSDAIAGLIFLEYKKSAQWSYE------LLVINYRGQLRSYLVSVGTNQGYQENHSFSF--SSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             ccccceeeeEeecccccccccee------EEEEeccceeeeEEEEcccCCcceeeEEEEe--cccCCCceeEEEEcCCCC
Confidence            12345566666532210000112      66777888888777643   11233333433  234567899999999999


Q ss_pred             EEEEEeeC----C-------eEEEEEcccCccc----------------Ccccc--cc------cccccccEEEEEeecC
Q 048511          189 SILAHGYG----G-------AFHLWRNVGVDID----------------NWQPQ--KV------PSGHFAAVMDISWSRS  233 (351)
Q Consensus       189 ~l~~~~~d----g-------~i~~~d~~~~~~~----------------~~~~~--~~------~~~~~~~v~~v~~sp~  233 (351)
                      .|++|+..    +       -+.-|.+-....-                .....  ..      .......|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88887632    1       2566765433110                00000  00      0123567999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCcc
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |..||+...+|.|.+|++.+-.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcch
Confidence            9999999999999999998765

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.65  E-value=1.5e-08  Score=88.69  Aligned_cols=212  Identities=13%  Similarity=0.116  Sum_probs=131.0

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      ..+.|+++.    -+  .+...++.|..+|.|.+-.+......                                 -+..
T Consensus        57 qy~kcva~~----y~--~d~cIlavG~atG~I~l~s~r~~hdS---------------------------------s~E~   97 (783)
T KOG1008|consen   57 QYVKCVASF----YG--NDRCILAVGSATGNISLLSVRHPHDS---------------------------------SAEV   97 (783)
T ss_pred             CCceeehhh----cC--CchhhhhhccccCceEEeecCCcccc---------------------------------ccee
Confidence            345666655    11  23346677777787777666543221                                 1123


Q ss_pred             ccccccceEEEEecCCCCCCCCCcccCCCceeEEee----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ..+|..+.++++|++     -|.+.      ||.|-    .|..+.|||+.+.-..+.....+..  .......+++|..
T Consensus        98 tp~~ar~Ct~lAwne-----LDtn~------LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlr  164 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNE-----LDTNH------LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLR  164 (783)
T ss_pred             ccccccccccccccc-----ccHHH------HHhhhhhhcccCCccceecccccCCCcccccccc--ccccCcccccccc
Confidence            456778899999997     66677      77774    3677999999872112222222111  1233455899998


Q ss_pred             CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCcEEEEc-CCCccccccCccc
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQTTRVFA-PWKNVASLMGENS  263 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~  263 (351)
                      +.+.+++|.....+.++|++...      .....-....+..+...| .+.++++-. ||.|.+|| .++-+..     .
T Consensus       165 d~klvlaGm~sr~~~ifdlRqs~------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp-----l  232 (783)
T KOG1008|consen  165 DTKLVLAGMTSRSVHIFDLRQSL------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP-----L  232 (783)
T ss_pred             Ccchhhcccccchhhhhhhhhhh------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH-----H
Confidence            88999999999999999998532      222122334567778888 777888765 99999999 4333310     0


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                      ...+.........+..++|+|...| ++++.. +.++|+++++.
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence            0011111111224889999995544 555555 66789999864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.62  E-value=6.7e-05  Score=61.90  Aligned_cols=234  Identities=15%  Similarity=0.124  Sum_probs=129.0

Q ss_pred             EEEEEccCCCceEEEEeeeecCCce--eEEEeeCCcccCCCCCccEEEEee-----CCCcEEEEecCCCcccceeecccc
Q 048511            8 IHLYRGQRTGKFVRACELKGHTDWI--RSLDFSLPVCTSGEAISILLVSSS-----QDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         8 i~vw~~~~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~~~~~~~~~l~t~~-----~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ..+||..+ ++..  ..+..-.+.-  =.-.|+        ++|++|+|.-     ..|.|-|||....-..........
T Consensus        30 ~~v~D~~~-g~~~--~~~~a~~gRHFyGHg~fs--------~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G   98 (305)
T PF07433_consen   30 ALVFDCRT-GQLL--QRLWAPPGRHFYGHGVFS--------PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG   98 (305)
T ss_pred             EEEEEcCC-Ccee--eEEcCCCCCEEecCEEEc--------CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence            56778777 5332  2222212111  125788        8899999874     358899999984333222233334


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                      -..-.+.+.++|+.|+++..-..        .|          |     ..++.     .|=....+..+...|..+  +
T Consensus        99 IGPHel~l~pDG~tLvVANGGI~--------Th----------p-----d~GR~-----kLNl~tM~psL~~ld~~s--G  148 (305)
T PF07433_consen   99 IGPHELLLMPDGETLVVANGGIE--------TH----------P-----DSGRA-----KLNLDTMQPSLVYLDARS--G  148 (305)
T ss_pred             cChhhEEEcCCCCEEEEEcCCCc--------cC----------c-----ccCce-----ecChhhcCCceEEEecCC--C
Confidence            45567778888877776542211        11          1     00010     022233455566667776  6


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCe-------EEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGA-------FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-------i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      ..+....+.. ..|...|..+++.++|..++..-..|.       |.+++....-.....+......-...+-+|+++++
T Consensus       149 ~ll~q~~Lp~-~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~  227 (305)
T PF07433_consen  149 ALLEQVELPP-DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRD  227 (305)
T ss_pred             ceeeeeecCc-cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCC
Confidence            6666544311 246778999999999886665443332       33443322100000000112233567999999999


Q ss_pred             CCEEEE-EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          234 SDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       234 ~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      +.++++ +-.-+.+.+||..++.          .+.....  ..+..++..+  ++ ++++.+...
T Consensus       228 g~~ia~tsPrGg~~~~~d~~tg~----------~~~~~~l--~D~cGva~~~--~~-f~~ssG~G~  278 (305)
T PF07433_consen  228 GRLIAVTSPRGGRVAVWDAATGR----------LLGSVPL--PDACGVAPTD--DG-FLVSSGQGQ  278 (305)
T ss_pred             CCEEEEECCCCCEEEEEECCCCC----------Eeecccc--CceeeeeecC--Cc-eEEeCCCcc
Confidence            987754 4457899999998887          3332221  2355666655  44 555555543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.62  E-value=8.8e-06  Score=69.91  Aligned_cols=193  Identities=14%  Similarity=0.167  Sum_probs=122.8

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEE-----eeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc---
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVS-----SSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS---  101 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  101 (351)
                      ..|+...|+    |.  .++..||.     .+.++++++|.+.....+... .........+.|.+.|.++++-...   
T Consensus       174 ~gi~dFsis----P~--~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~k  246 (561)
T COG5354         174 VGILDFSIS----PE--GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTK  246 (561)
T ss_pred             cceeeEEec----CC--CCCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeee
Confidence            567778888    32  23444553     367889999999855443322 2223456678888888877762100   


Q ss_pred             --------eeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511          102 --------YQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus       102 --------~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  166 (351)
                              ..+.+..       ....-.++|....|.|      .++.    .-+++|-.+-.+.++|++.  . ....+
T Consensus       247 snKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p------~S~~----F~vi~g~~pa~~s~~~lr~--N-l~~~~  313 (561)
T COG5354         247 SNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP------LSSR----FAVISGYMPASVSVFDLRG--N-LRFYF  313 (561)
T ss_pred             cccceeccceEEEEeecccccceeccccccceeeeecc------cCCc----eeEEecccccceeeccccc--c-eEEec
Confidence                    1111111       1124478999999995      4444    0134455788999999986  3 22222


Q ss_pred             EeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--
Q 048511          167 TVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--  241 (351)
Q Consensus       167 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--  241 (351)
                             ....=..+.|+|.+++++.++.|   |.+-+||.....    .++..+.+..  ..-+.|+|+++++.+..  
T Consensus       314 -------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~n--~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         314 -------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGLN--TSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             -------CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecCC--ceEeeccCCceEEEecCCC
Confidence                   22233567899999999998876   789999987752    4443555433  34468999999987664  


Q ss_pred             ----CCCcEEEEcCCCcc
Q 048511          242 ----HDQTTRVFAPWKNV  255 (351)
Q Consensus       242 ----~dg~i~vwd~~~~~  255 (351)
                          .|..|.|||+....
T Consensus       381 ~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         381 EKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             cccccCcceEEEEecCch
Confidence                37889999986554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=0.00013  Score=60.10  Aligned_cols=149  Identities=14%  Similarity=0.080  Sum_probs=88.3

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecC--------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD--------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ....+.+++.      ++|++      .++....        |.|..++..   ++.....      ..-.....++|+|
T Consensus        85 ~~~~ND~~vd------~~G~l------y~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~------~~~~~pNGi~~s~  143 (246)
T PF08450_consen   85 FNRPNDVAVD------PDGNL------YVTDSGGGGASGIDPGSVYRIDPD---GKVTVVA------DGLGFPNGIAFSP  143 (246)
T ss_dssp             TEEEEEEEE-------TTS-E------EEEEECCBCTTCGGSEEEEEEETT---SEEEEEE------EEESSEEEEEEET
T ss_pred             cCCCceEEEc------CCCCE------EEEecCCCccccccccceEEECCC---CeEEEEe------cCcccccceEECC
Confidence            3467888898      67877      7765543        445555554   2221111      1223467899999


Q ss_pred             CCCEEEE-EeeCCeEEEEEcccCcc--cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511          186 DGRSILA-HGYGGAFHLWRNVGVDI--DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       186 ~~~~l~~-~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  262 (351)
                      +++.|+. -+..+.|..|++.....  ........+....+..-.+++..+|++.++.-..+.|.++|.. ++       
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-------  215 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-------  215 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-------
T ss_pred             cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-------
Confidence            9997764 55678999999964321  0011122233333457889999999988887788999999987 54       


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      ....+.   .....+++++|-..+.+.+++|.
T Consensus       216 ~~~~i~---~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  216 LLREIE---LPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEE----SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEEc---CCCCCEEEEEEECCCCCEEEEEe
Confidence            122332   22346899999531234455554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.58  E-value=1.3e-05  Score=70.44  Aligned_cols=75  Identities=11%  Similarity=0.031  Sum_probs=62.6

Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      .....+.+.+++|+...++.|+.||.|.+||...+.       ..+....-.++.++|+|+|.++++|+..|.+.+||+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            355679999999999999999999999999997752       2222344567889999999999999999999999986


Q ss_pred             Cc
Q 048511          253 KN  254 (351)
Q Consensus       253 ~~  254 (351)
                      -.
T Consensus       330 Ls  331 (545)
T PF11768_consen  330 LS  331 (545)
T ss_pred             cC
Confidence            44

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=2.2e-05  Score=71.71  Aligned_cols=197  Identities=13%  Similarity=0.123  Sum_probs=125.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCc-eeEEEeeCCcccCCCCCccEEEEeeCCCc-----EEEEecCCCccccee
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDW-IRSLDFSLPVCTSGEAISILLVSSSQDKV-----IRIWKLALRGSSANT   75 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~-----i~iwd~~~~~~~~~~   75 (351)
                      |+.+|.|.+.+-.-    +....++++... |+.+...        ....+|++.+.|+.     |+||+++.-+.....
T Consensus        41 gt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~--------~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   41 GTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYIL--------NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             eeccccEEEecccc----eeeehheecchhhhhHhhcc--------cCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            45666666655433    555778888877 6656555        44578888887754     899999754321100


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEE-eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      .      ..                 +..++.. .......++.+++++      .+-+.      +|.|-.+|.|..+.
T Consensus       109 ~------c~-----------------~~~ri~~~~np~~~~p~s~l~Vs------~~l~~------Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen  109 Q------CL-----------------YEHRIFTIKNPTNPSPASSLAVS------EDLKT------IVCGFTNGLVICYK  153 (933)
T ss_pred             c------ee-----------------eeeeeeccCCCCCCCcceEEEEE------ccccE------EEEEecCcEEEEEc
Confidence            0      00                 0001111 112245678899999      67777      99999999999886


Q ss_pred             ccC--CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          155 PEK--TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       155 ~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      -.-  ..+.. ..+.    .....+|+.+++..+++.++-...-..|.+|.+.+..    .....+..|...+.+..+++
T Consensus       154 GDi~RDrgsr-~~~~----~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~----p~~~~ld~~G~~lnCss~~~  224 (933)
T KOG2114|consen  154 GDILRDRGSR-QDYS----HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT----PSLKVLDNNGISLNCSSFSD  224 (933)
T ss_pred             Ccchhccccc-eeee----ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC----cceeeeccCCccceeeecCC
Confidence            321  11221 1111    2345689999999888874445556679999998542    12445777888899999998


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ....|++++ +..+.+||.....
T Consensus       225 ~t~qfIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  225 GTYQFICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CCccEEEec-CceEEEEcCCCcc
Confidence            766566554 4579999987654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.56  E-value=5.2e-05  Score=67.15  Aligned_cols=250  Identities=12%  Similarity=0.065  Sum_probs=126.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.+|.++.+|.++ |+.  +...+.. +.+.+--.         -.+..++.+..++.|..+|..+++.+.........
T Consensus       126 ~~~~g~l~ald~~t-G~~--~W~~~~~-~~~~ssP~---------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        126 GSEKGQVYALNAED-GEV--AWQTKVA-GEALSRPV---------VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             EcCCCEEEEEECCC-CCC--cccccCC-CceecCCE---------EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            45677888888877 643  2222221 12221111         12346666777899999999998877655432110


Q ss_pred             c----eeeeEeeecCCeEEecCCceeEEEEEeccccccce---------------EEEEecCCCCCCCCCcccCCCceeE
Q 048511           82 E----VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWV---------------YSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .    ..+...  .+..++++..++.+..+....+...+-               ..+..+|-    -.+..      +.
T Consensus       193 ~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v~~~~------vy  260 (394)
T PRK11138        193 LTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----VVGGV------VY  260 (394)
T ss_pred             ccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE----EECCE------EE
Confidence            0    000011  122233333344333322222211100               00111110    01223      66


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccc
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF  222 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  222 (351)
                      .++.++.+..+|+.+  ++.+-.....   .    ...+.  ..+..++.++.+|.+..+|..+++.. |+. ..+ .+ 
T Consensus       261 ~~~~~g~l~ald~~t--G~~~W~~~~~---~----~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~-W~~-~~~-~~-  325 (394)
T PRK11138        261 ALAYNGNLVALDLRS--GQIVWKREYG---S----VNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL-WSQ-SDL-LH-  325 (394)
T ss_pred             EEEcCCeEEEEECCC--CCEEEeecCC---C----ccCcE--EECCEEEEEcCCCeEEEEECCCCcEE-Ecc-ccc-CC-
Confidence            677899999999998  5433322211   1    11122  24567888889999999999887421 110 001 11 


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      ....+...  .+.+|+.++.||.+.+.|..+++          .+.+.......+..--...   +..|+.++.||.|..
T Consensus       326 ~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~----------~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l~~  390 (394)
T PRK11138        326 RLLTAPVL--YNGYLVVGDSEGYLHWINREDGR----------FVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTVYA  390 (394)
T ss_pred             CcccCCEE--ECCEEEEEeCCCEEEEEECCCCC----------EEEEEEcCCCcceeCCEEE---CCEEEEEeCCceEEE
Confidence            11111111  24567888999999999998887          2222222222222211112   447888899999988


Q ss_pred             EecC
Q 048511          303 FEAP  306 (351)
Q Consensus       303 w~~~  306 (351)
                      ++++
T Consensus       391 ~~~~  394 (394)
T PRK11138        391 ITRP  394 (394)
T ss_pred             EeCC
Confidence            8753

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=1.6e-06  Score=79.41  Aligned_cols=176  Identities=9%  Similarity=0.032  Sum_probs=116.0

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      ...+..+|..+ .+  ......--.+.|+-|+.+          +++|.+|...|+|.+-|.++.+              
T Consensus       156 Q~~li~~Dl~~-~~--e~r~~~v~a~~v~imR~N----------nr~lf~G~t~G~V~LrD~~s~~--------------  208 (1118)
T KOG1275|consen  156 QEKLIHIDLNT-EK--ETRTTNVSASGVTIMRYN----------NRNLFCGDTRGTVFLRDPNSFE--------------  208 (1118)
T ss_pred             hhheeeeeccc-ce--eeeeeeccCCceEEEEec----------CcEEEeecccceEEeecCCcCc--------------
Confidence            34455566655 32  222222223346666655          6788888888888888877653              


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec---------CCeEEEEec
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---------DKTMMIWQP  155 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~  155 (351)
                                           .++.+..|++.|..+...        |++      |++++.         |..|+|||+
T Consensus       209 ---------------------~iht~~aHs~siSDfDv~--------GNl------LitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  209 ---------------------TIHTFDAHSGSISDFDVQ--------GNL------LITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ---------------------eeeeeeccccceeeeecc--------CCe------EEEeecccccccccccchhhhhhh
Confidence                                 335677899999888765        667      888874         677999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                      +.  -..+..+.     .+.+ ..-+.|+|.- ..+++++..|...+-|..+-... ..-++.+......+.++++++++
T Consensus       254 Rm--mral~PI~-----~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  254 RM--MRALSPIQ-----FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP-PAGVKMVNPNGSGISAFDISSNG  324 (1118)
T ss_pred             hh--hhccCCcc-----cccC-chhhhhcccccceEEEEecccceeeccccccCCC-ccceeEEccCCCcceeEEecCCC
Confidence            98  44433333     1111 2446778853 57888999999999984322100 01122333344569999999999


Q ss_pred             CEEEEEeCCCcEEEEcC
Q 048511          235 DYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~  251 (351)
                      +.++.|..+|.|.+|.-
T Consensus       325 ~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  325 DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ceEEEecccCcEeeecC
Confidence            99999999999999983

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.2e-05  Score=73.38  Aligned_cols=154  Identities=12%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             eEEeecCC-----eEEEEeccCCC----cceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511          141 ILSASMDK-----TMMIWQPEKTT----GIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       141 l~s~~~d~-----~i~iwd~~~~~----~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~  209 (351)
                      |++.+.|+     .++|||++..+    ..++....+..  .+....++.+++.+.+-+.+++|-.+|.|..+.-+-.+.
T Consensus        80 L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD  159 (933)
T KOG2114|consen   80 LFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD  159 (933)
T ss_pred             EEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc
Confidence            77777665     49999998642    22332222222  233567889999999999999999999999985422111


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                      +..+ ..-......+|+++.+..++..++-...-..|.+|.+....         -.......|+.++.|.++++  ...
T Consensus       160 rgsr-~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~---------p~~~~ld~~G~~lnCss~~~--~t~  227 (933)
T KOG2114|consen  160 RGSR-QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT---------PSLKVLDNNGISLNCSSFSD--GTY  227 (933)
T ss_pred             cccc-eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC---------cceeeeccCCccceeeecCC--CCc
Confidence            1011 11122245689999999998873333345679999987433         12333557888899999998  334


Q ss_pred             EEEEecCCCeEEEEecCc
Q 048511          290 RFVSGADEKVARVFEAPL  307 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~~  307 (351)
                      .|++++. ..+.+|+.++
T Consensus       228 qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  228 QFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             cEEEecC-ceEEEEcCCC
Confidence            3444433 3678888773

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.54  E-value=1.1e-07  Score=83.61  Aligned_cols=242  Identities=14%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----CCCcEEEEecCCCcccceee
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----QDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +|..+|.|-+-.+.. .....-....+|....++++|+    +   -|.+.||.|-    .|..+.|||+.+.-......
T Consensus        75 vG~atG~I~l~s~r~-~hdSs~E~tp~~ar~Ct~lAwn----e---LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~  146 (783)
T KOG1008|consen   75 VGSATGNISLLSVRH-PHDSSAEVTPGYARPCTSLAWN----E---LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES  146 (783)
T ss_pred             hccccCceEEeecCC-cccccceecccccccccccccc----c---ccHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence            477889998888776 3222233456788899999999    2   3556777662    45679999998763211000


Q ss_pred             cccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc
Q 048511           77 STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                                       ...             ..+......+++|.      .+.++      +++|...+.++++|++
T Consensus       147 -----------------~~f-------------s~~~l~gqns~cwl------rd~kl------vlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  147 -----------------PLF-------------SSSTLDGQNSVCWL------RDTKL------VLAGMTSRSVHIFDLR  184 (783)
T ss_pred             -----------------ccc-------------ccccccCccccccc------cCcch------hhcccccchhhhhhhh
Confidence                             000             00122334578888      67788      9999999999999999


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEc-ccCcccCccccccccccc----ccEEEEEe
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRN-VGVDIDNWQPQKVPSGHF----AAVMDISW  230 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~-~~~~~~~~~~~~~~~~~~----~~v~~v~~  230 (351)
                      ...   .....     ..+..+..+..+| .+.++++.. ||.|.+||. +.-+    .++..+...+    ..+..++|
T Consensus       185 qs~---~~~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie----npl~~i~~~~N~~~~~l~~~ay  251 (783)
T KOG1008|consen  185 QSL---DSVSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE----NPLQIILRNENKKPKQLFALAY  251 (783)
T ss_pred             hhh---hhhhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhc----cHHHHHhhCCCCcccceeeEEe
Confidence            411   11111     2233466678888 667776655 999999994 4332    3444443222    24899999


Q ss_pred             ecCC-CEEEEEeC-CCcEEEEcCCCccccccC-ccceEEecc---ccccc--cceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          231 SRSS-DYLLSVSH-DQTTRVFAPWKNVASLMG-ENSWHEVAR---PQVHG--HDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       231 sp~~-~~l~s~~~-dg~i~vwd~~~~~~~~~~-~~~~~~~~~---~~~~~--~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      +|.. ..+++... .++|+++|+......... .........   ++..+  ..|.+..|++...-+..+.+-..-.+.-
T Consensus       252 cPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~D  331 (783)
T KOG1008|consen  252 CPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKD  331 (783)
T ss_pred             ccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhh
Confidence            9953 24555554 478999998654321110 011111111   22222  4588888887332344555555555555


Q ss_pred             Eec
Q 048511          303 FEA  305 (351)
Q Consensus       303 w~~  305 (351)
                      |++
T Consensus       332 f~V  334 (783)
T KOG1008|consen  332 FSV  334 (783)
T ss_pred             ccc
Confidence            544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=4.6e-06  Score=75.48  Aligned_cols=187  Identities=12%  Similarity=0.093  Sum_probs=123.3

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      .+.++|++++          ++.|+-|+.+|.|++.+..... .                                    
T Consensus        39 ~D~is~~av~----------~~~~~~GtH~g~v~~~~~~~~~-~------------------------------------   71 (846)
T KOG2066|consen   39 NDAISCCAVH----------DKFFALGTHRGAVYLTTCQGNP-K------------------------------------   71 (846)
T ss_pred             hhHHHHHHhh----------cceeeeccccceEEEEecCCcc-c------------------------------------
Confidence            3567788887          7799999999999999876431 1                                    


Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--  186 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--  186 (351)
                      ....|...      .      .+|.+      +++|+.||.|.|-.+-+  ......+.      ...++.+++++|+  
T Consensus        72 ~~~~~s~~------~------~~Gey------~asCS~DGkv~I~sl~~--~~~~~~~d------f~rpiksial~Pd~~  125 (846)
T KOG2066|consen   72 TNFDHSSS------I------LEGEY------VASCSDDGKVVIGSLFT--DDEITQYD------FKRPIKSIALHPDFS  125 (846)
T ss_pred             cccccccc------c------cCCce------EEEecCCCcEEEeeccC--CccceeEe------cCCcceeEEeccchh
Confidence            11123222      3      68889      99999999999998887  44333332      2357899999997  


Q ss_pred             ---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511          187 ---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       187 ---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  263 (351)
                         .+.+++|+.-| +.++.-+--..   .-...+..-.++|.+++|.  |+++|=++.+ -|+|||+..++.       
T Consensus       126 ~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v~l~~~eG~I~~i~W~--g~lIAWand~-Gv~vyd~~~~~~-------  191 (846)
T KOG2066|consen  126 RQQSKQFVSGGMAG-LVLSERNWLGN---KDSVVLSEGEGPIHSIKWR--GNLIAWANDD-GVKVYDTPTRQR-------  191 (846)
T ss_pred             hhhhhheeecCcce-EEEehhhhhcC---ccceeeecCccceEEEEec--CcEEEEecCC-CcEEEeccccce-------
Confidence               46889999888 77775432110   1111345567899999996  6688877655 589999988762       


Q ss_pred             eEEecccccc---ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          264 WHEVARPQVH---GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ...+..+...   ..-...+.|.+   ...|+.|-.| +|+|..++
T Consensus       192 l~~i~~p~~~~R~e~fpphl~W~~---~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  192 LTNIPPPSQSVRPELFPPHLHWQD---EDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             eeccCCCCCCCCcccCCCceEecC---CCeEEEecCC-eEEEEEEe
Confidence            1122111110   11145677876   5667777665 66777665

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.51  E-value=0.00012  Score=63.95  Aligned_cols=244  Identities=12%  Similarity=0.104  Sum_probs=123.5

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee--eeEe-eecCCeEEecCC-----ce
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI--SLAS-YIEGPVLVAGSS-----SY  102 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~~~~-----~~  102 (351)
                      .|+.|.|.        ++...|+.+...|.|.||.+...+...........+..  .+.. +..+.+.-+..+     ..
T Consensus         3 ~v~~vs~a--------~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFA--------PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEE--------TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEec--------CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccccc
Confidence            58899999        77778999999999999988755433200000000000  0000 012233333221     11


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc--c-cccccceE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE--L-SHSALGFY  179 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~-~~~~~~i~  179 (351)
                      .+.....+....++|++++.+       |--+      +|.|..+|.+.|.|+|.  ...+..-.+.+  . ......++
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-------~iGF------vaigy~~G~l~viD~RG--PavI~~~~i~~~~~~~~~~~~vt  139 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-------DIGF------VAIGYESGSLVVIDLRG--PAVIYNENIRESFLSKSSSSYVT  139 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--------BTSE------EEEEETTSEEEEEETTT--TEEEEEEEGGG--T-SS----EE
T ss_pred             ccCchhheeccCCcEeEEecC-------CCcE------EEEEecCCcEEEEECCC--CeEEeeccccccccccccccCee
Confidence            244455566668999999998       4445      99999999999999987  55555544433  1 12344677


Q ss_pred             EEEEcC-----CC---CEEEEEeeCCeEEEEEcccCcccCcc--cccccccccccEEEEE-eecC---------------
Q 048511          180 GGHWSP-----DG---RSILAHGYGGAFHLWRNVGVDIDNWQ--PQKVPSGHFAAVMDIS-WSRS---------------  233 (351)
Q Consensus       180 ~i~~~~-----~~---~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~v~~v~-~sp~---------------  233 (351)
                      ++.|..     |+   -.+++|...|.+.+|.+.-.....|.  .......+.+.|..+. ++.+               
T Consensus       140 ~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l  219 (395)
T PF08596_consen  140 SIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL  219 (395)
T ss_dssp             EEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred             EEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence            888762     33   47888999999999988521111111  1111123445555554 3211               


Q ss_pred             --C---CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee---eCCCcEEEEecCCCeEEEEec
Q 048511          234 --S---DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ---GKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       234 --~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~s~~~dg~v~vw~~  305 (351)
                        +   +.++....+..++++...+.+.          ..+..........+.+.+   ...+..|++-..+|.|+++.+
T Consensus       220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~----------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  220 SKGISIPGYVVVVSESDIRVFKPPKSKG----------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             GGT----EEEEEE-SSEEEEE-TT---E----------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             ccCCCcCcEEEEEcccceEEEeCCCCcc----------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence              1   2234444577899999877662          111111111233334421   114778889999999999998


Q ss_pred             Cc
Q 048511          306 PL  307 (351)
Q Consensus       306 ~~  307 (351)
                      ++
T Consensus       290 P~  291 (395)
T PF08596_consen  290 PS  291 (395)
T ss_dssp             TT
T ss_pred             CC
Confidence            84

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2.3e-05  Score=71.08  Aligned_cols=138  Identities=17%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeec-----CCeEEecCCceeEEEEE---------eccc
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIE-----GPVLVAGSSSYQVSVES---------LLIG  112 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~---------~~~~  112 (351)
                      .+|.+++|||.||+|.|-.+.+.+......-  ..++.+++++|+     .+.+++|+..+-+-..+         .+..
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~  158 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSE  158 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeec
Confidence            4699999999999999999988776554433  347778888886     56777777776321111         2344


Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCCCCEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPDGRSIL  191 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~  191 (351)
                      ..++|.++.|.        |++      +|-++.+| |++||+..  +..+..++... .......-..+.|.++.+ |+
T Consensus       159 ~eG~I~~i~W~--------g~l------IAWand~G-v~vyd~~~--~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LV  220 (846)
T KOG2066|consen  159 GEGPIHSIKWR--------GNL------IAWANDDG-VKVYDTPT--RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LV  220 (846)
T ss_pred             CccceEEEEec--------CcE------EEEecCCC-cEEEeccc--cceeeccCCCCCCCCcccCCCceEecCCCe-EE
Confidence            56789999998        667      88888887 99999988  55444443221 111122334677876654 44


Q ss_pred             EEeeCCeEEEEEcc
Q 048511          192 AHGYGGAFHLWRNV  205 (351)
Q Consensus       192 ~~~~dg~i~~~d~~  205 (351)
                      .| ...+|++..++
T Consensus       221 IG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  221 IG-WGDSVKICSIK  233 (846)
T ss_pred             Ee-cCCeEEEEEEe
Confidence            44 44568888887

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.6e-05  Score=71.94  Aligned_cols=289  Identities=12%  Similarity=0.073  Sum_probs=156.1

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +.-.|.|.+||... +  ..+..++.|.++|..++|-+...    .....|+.-....+|.+|+..+++......-.+  
T Consensus        85 aD~~GrIil~d~~~-~--s~~~~l~~~~~~~qdl~W~~~rd----~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--  155 (1062)
T KOG1912|consen   85 ADISGRIILVDFVL-A--SVINWLSHSNDSVQDLCWVPARD----DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--  155 (1062)
T ss_pred             ccccCcEEEEEehh-h--hhhhhhcCCCcchhheeeeeccC----cchheeEEecCCcEEEEEEccCCceeeccccCC--
Confidence            55679999999988 5  44567888999999999982211    222566666667899999999998776554322  


Q ss_pred             cee-eeEeee----------cCCeEEecC------CceeEEEEEecccccc----------------c-------e--EE
Q 048511           82 EVI-SLASYI----------EGPVLVAGS------SSYQVSVESLLIGHED----------------W-------V--YS  119 (351)
Q Consensus        82 ~~~-~~~~~~----------~~~~l~~~~------~~~~~~~~~~~~~h~~----------------~-------v--~~  119 (351)
                      .+. ++.+.|          .+.++.+..      .+...+..+.-..|.+                .       .  ..
T Consensus       156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~  235 (1062)
T KOG1912|consen  156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ  235 (1062)
T ss_pred             cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence            222 233333          222222210      1111122221112211                0       0  12


Q ss_pred             EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCC
Q 048511          120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGG  197 (351)
Q Consensus       120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg  197 (351)
                      ++|+|     .-.+       ++-......+.++|++.  ..++..+.+     ..+.+.-+.+-|++  ..|++...||
T Consensus       236 faf~p-----~~rn-------~lfi~~prellv~dle~--~~~l~vvpi-----er~~akfv~vlP~~~rd~LfclH~nG  296 (1062)
T KOG1912|consen  236 FAFSP-----HWRN-------ILFITFPRELLVFDLEY--ECCLAVVPI-----ERGGAKFVDVLPDPRRDALFCLHSNG  296 (1062)
T ss_pred             hhcCh-----hhhc-------eEEEEeccceEEEcchh--hceeEEEEe-----ccCCcceeEeccCCCcceEEEEecCC
Confidence            44554     2222       33334566799999998  666666553     23344456666654  5899999999


Q ss_pred             eEEEEEcccCcccCccccccccc-ccccE-----------EEEEeecC-CCEEEEEeCCCcEEEEcCCCcccccc-----
Q 048511          198 AFHLWRNVGVDIDNWQPQKVPSG-HFAAV-----------MDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLM-----  259 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~~-~~~~v-----------~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~-----  259 (351)
                      .+.+|-.+.......++...+.. -...+           ......|. ...++.--.+|.+.+|.+.+++....     
T Consensus       297 ~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~  376 (1062)
T KOG1912|consen  297 RLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS  376 (1062)
T ss_pred             eEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc
Confidence            99999765421110111111110 01111           22223343 23333334577888898886553321     


Q ss_pred             ----------------CccceEEeccccccccceeEEEEeeeC---------C-------CcEEEEecCCCeEEEEecC-
Q 048511          260 ----------------GENSWHEVARPQVHGHDINCVTIIQGK---------G-------NHRFVSGADEKVARVFEAP-  306 (351)
Q Consensus       260 ----------------~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~-------~~~l~s~~~dg~v~vw~~~-  306 (351)
                                      ....+..+.....|....++....|.+         .       -.++|.|...|+|.+.|+. 
T Consensus       377 iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst  456 (1062)
T KOG1912|consen  377 IELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST  456 (1062)
T ss_pred             ccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc
Confidence                            001111122222344445554444310         1       2478899999999999987 


Q ss_pred             chhhhceeeccc
Q 048511          307 LSFLKTLNHATF  318 (351)
Q Consensus       307 ~~~~~~~~~~~~  318 (351)
                      +...+.+.-|+.
T Consensus       457 ~~v~~~fsvht~  468 (1062)
T KOG1912|consen  457 NAVAASFSVHTS  468 (1062)
T ss_pred             hhhhhhhccccc
Confidence            666667766654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.41  E-value=0.00051  Score=57.53  Aligned_cols=275  Identities=15%  Similarity=0.136  Sum_probs=145.5

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~   75 (351)
                      ++++|+|.++ +++  +-.+.+  +-.-.+..+        ++++.+++++          ..-.|.+||..+-....++
T Consensus        17 ~rv~viD~d~-~k~--lGmi~~--g~~~~~~~s--------pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI   83 (342)
T PF06433_consen   17 SRVYVIDADS-GKL--LGMIDT--GFLGNVALS--------PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI   83 (342)
T ss_dssp             EEEEEEETTT-TEE--EEEEEE--ESSEEEEE---------TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCC-CcE--EEEeec--ccCCceeEC--------CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE
Confidence            5789999888 643  334432  223346678        7888888764          2346999999988776655


Q ss_pred             ecccc------cceeeeEeeecCCeEEecC--CceeEEEEEecccc----ccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           76 QSTYR------KEVISLASYIEGPVLVAGS--SSYQVSVESLLIGH----EDWVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        76 ~~~~~------~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~h----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      ..+..      .....+..+.+++++.+..  ...++.++..-...    -..--|....|.     ...-      |.+
T Consensus        84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-----~~~~------F~~  152 (342)
T PF06433_consen   84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-----GNRG------FSM  152 (342)
T ss_dssp             EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-----ETTE------EEE
T ss_pred             ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-----CCCc------eEE
Confidence            54432      1223456778888877743  33344444321110    000013334431     1123      788


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc----
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS----  219 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----  219 (351)
                      -+.||.+.-..+... |+...+............+..-++...+..++--+.+|.|+-.|+.........+...+.    
T Consensus       153 lC~DGsl~~v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~  231 (342)
T PF06433_consen  153 LCGDGSLLTVTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK  231 (342)
T ss_dssp             EETTSCEEEEEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred             EecCCceEEEEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence            889999999888853 333322211111112212223445555555655788999999888765432111111111    


Q ss_pred             ---cccccEEEEEeecCCCEEEEEeC--------CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511          220 ---GHFAAVMDISWSRSSDYLLSVSH--------DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK  286 (351)
Q Consensus       220 ---~~~~~v~~v~~sp~~~~l~s~~~--------dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (351)
                         --.+.-.-+++++..+.|++--.        |+  .|.++|+.+++          .+.++.. ..++.+++++. +
T Consensus       232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----------rv~Ri~l-~~~~~Si~Vsq-d  299 (342)
T PF06433_consen  232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----------RVARIPL-EHPIDSIAVSQ-D  299 (342)
T ss_dssp             HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----------EEEEEEE-EEEESEEEEES-S
T ss_pred             ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----------EEEEEeC-CCccceEEEcc-C
Confidence               01222334677765555443221        11  47777887776          4554432 24588999998 2


Q ss_pred             CCcEEE-EecCCCeEEEEecC-chhhhceeecc
Q 048511          287 GNHRFV-SGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       287 ~~~~l~-s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +.-+|. ....++.+.+||.. |+.++++.+..
T Consensus       300 ~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  300 DKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             SS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred             CCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence            333554 45578999999976 88887776554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.38  E-value=1.4e-05  Score=73.54  Aligned_cols=147  Identities=10%  Similarity=0.085  Sum_probs=104.7

Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---------CCeEE
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---------GGAFH  200 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~  200 (351)
                      .+++.      +.+|...|+|.+-|.++  .+.++++.     .|.+.|..+.  -.|+.|++++.         |..|+
T Consensus       185 ~Nnr~------lf~G~t~G~V~LrD~~s--~~~iht~~-----aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  185 YNNRN------LFCGDTRGTVFLRDPNS--FETIHTFD-----AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             ecCcE------EEeecccceEEeecCCc--Cceeeeee-----ccccceeeee--ccCCeEEEeecccccccccccchhh
Confidence            34667      99999999999999999  77777777     8888876655  47889999886         45589


Q ss_pred             EEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      |||++.-+     .+..+.-+.++ .-+.|.|. ...+++++..|...+-|..+-....      ..+......+..+..
T Consensus       250 VYDLRmmr-----al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~------~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  250 VYDLRMMR-----ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP------AGVKMVNPNGSGISA  317 (1118)
T ss_pred             hhhhhhhh-----ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc------cceeEEccCCCccee
Confidence            99998853     23333333332 44677874 3457788889999999944332110      011122223344899


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +++++  +++.++.|..+|.|.+|.-
T Consensus       318 fDiSs--n~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  318 FDISS--NGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEecC--CCceEEEecccCcEeeecC
Confidence            99999  9999999999999999983

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.36  E-value=1.3e-05  Score=71.65  Aligned_cols=210  Identities=10%  Similarity=0.019  Sum_probs=124.3

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      ..+++++.|+.-|.+.+++-..+.......                                  .+-...+..+..+   
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~----------------------------------~~~~~~~~~~~vs---   85 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----------------------------------EGATGITCVRSVS---   85 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhhcccc----------------------------------cCccceEEEEEec---
Confidence            568899999999999999987665432111                                  2223445556667   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~  206 (351)
                         ++..+      +|.|+..|.|.++.+........ .+.......|...|++++|++++..+++|...|.|.+-.+..
T Consensus        86 ---~~e~l------vAagt~~g~V~v~ql~~~~p~~~-~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   86 ---SVEYL------VAAGTASGRVSVFQLNKELPRDL-DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ---chhHh------hhhhcCCceEEeehhhccCCCcc-eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               56677      89999999999999887222111 121112234678899999999999999999999999988877


Q ss_pred             CcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511          207 VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK  286 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (351)
                      . .......+.+..-.+.|..+.... +.+|++....  -.+++++...        +..+.+..-.+-.-...+|-|..
T Consensus       156 ~-~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~r--~~Lc~tE~et--------i~QIG~k~R~~~~~~GACF~~g~  223 (726)
T KOG3621|consen  156 R-QAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLTR--CILCQTEAET--------ITQIGKKPRKSLIDFGACFFPGQ  223 (726)
T ss_pred             h-hhhccccceeeccCcceEEeeccc-ceehHhhhhh--hheeecchhH--------HHHhcCCCcCCccccceEEeecc
Confidence            2 111123344444567787777653 3344443322  2355554443        11222211111112344565511


Q ss_pred             C--CcEEEEecCCCeEEEEecC--chhhhceeec
Q 048511          287 G--NHRFVSGADEKVARVFEAP--LSFLKTLNHA  316 (351)
Q Consensus       287 ~--~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~  316 (351)
                      .  ..-.+.++.-|. |+|.++  |..+++.+--
T Consensus       224 ~~~q~~~IycaRPG~-RlWead~~G~V~~Thqfk  256 (726)
T KOG3621|consen  224 CKAQKPQIYCARPGL-RLWEADFAGEVIKTHQFK  256 (726)
T ss_pred             ccCCCceEEEecCCC-ceEEeecceeEEEeeehh
Confidence            0  233344444433 778755  8877776533

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=5.2e-07  Score=82.30  Aligned_cols=162  Identities=15%  Similarity=0.092  Sum_probs=114.0

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +....++..|+...+|++|+        .+.+.|+.|+..|.|+++++.++....                         
T Consensus      1091 Fr~w~~frd~~~~fTc~afs--------~~~~hL~vG~~~Geik~~nv~sG~~e~------------------------- 1137 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFS--------GGTNHLAVGSHAGEIKIFNVSSGSMEE------------------------- 1137 (1516)
T ss_pred             cccchhhhccccceeeEEee--------cCCceEEeeeccceEEEEEccCccccc-------------------------
Confidence            44556788899999999999        888999999999999999999886542                         


Q ss_pred             CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CC-eEEEEeccCCCcceEEEEEecccccccc
Q 048511           99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK-TMMIWQPEKTTGIWMNVVTVGELSHSAL  176 (351)
Q Consensus        99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (351)
                                ...+|..+|+-+.=+      .+|..      .++.+. .. ...+|++... +...+.+.         
T Consensus      1138 ----------s~ncH~SavT~vePs------~dgs~------~Ltsss~S~PlsaLW~~~s~-~~~~Hsf~--------- 1185 (1516)
T KOG1832|consen 1138 ----------SVNCHQSAVTLVEPS------VDGST------QLTSSSSSSPLSALWDASST-GGPRHSFD--------- 1185 (1516)
T ss_pred             ----------ccccccccccccccc------CCcce------eeeeccccCchHHHhccccc-cCcccccc---------
Confidence                      245799999999877      77776      555443 33 4779998762 33333332         


Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-ccc---ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSG---HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~---~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      .-.++.|+..-..-+.|+......+||+.++.     ++.+ +.+   ....=+.+.|+|+..+++   .||  .+||++
T Consensus      1186 ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR 1255 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVR 1255 (1516)
T ss_pred             ccceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeec
Confidence            23567787765555556666778999999974     3333 221   222236678999987766   355  489998


Q ss_pred             Ccc
Q 048511          253 KNV  255 (351)
Q Consensus       253 ~~~  255 (351)
                      ..+
T Consensus      1256 ~~~ 1258 (1516)
T KOG1832|consen 1256 IPE 1258 (1516)
T ss_pred             cHH
Confidence            775

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.33  E-value=0.00045  Score=61.21  Aligned_cols=226  Identities=12%  Similarity=0.090  Sum_probs=117.5

Q ss_pred             ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEe------
Q 048511           49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQW------  122 (351)
Q Consensus        49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~------  122 (351)
                      +..++.++.++.+..+|..+++.........  ...+-..- .+..++++..++.+..+....|.  .++....      
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~~~~~  194 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EALSRPVV-SDGLVLVHTSNGMLQALNESDGA--VKWTVNLDVPSLT  194 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC--ceecCCEE-ECCEEEEECCCCEEEEEEccCCC--EeeeecCCCCccc
Confidence            5567778889999999999998876554322  11111011 12333334444443333322211  1111111      


Q ss_pred             -----cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc-cc-cceEEEEEcC--CCCEEEEE
Q 048511          123 -----EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH-SA-LGFYGGHWSP--DGRSILAH  193 (351)
Q Consensus       123 -----~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~-~~i~~i~~~~--~~~~l~~~  193 (351)
                           +|.    ..+..      ++.++.++.+..+|..+  ++.+-......... .. .....+.-+|  .+..++++
T Consensus       195 ~~~~~sP~----v~~~~------v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~  262 (394)
T PRK11138        195 LRGESAPA----TAFGG------AIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL  262 (394)
T ss_pred             ccCCCCCE----EECCE------EEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence                 110    01122      66677889999999988  44333222111100 00 0011111122  34567778


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      +.+|.+..+|..+++.. |+  ..+.    ....+.  ..+..++.++.++.+..+|..+++      ..|+.-. .  .
T Consensus       263 ~~~g~l~ald~~tG~~~-W~--~~~~----~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~-~--~  324 (394)
T PRK11138        263 AYNGNLVALDLRSGQIV-WK--REYG----SVNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSD-L--L  324 (394)
T ss_pred             EcCCeEEEEECCCCCEE-Ee--ecCC----CccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccc-c--C
Confidence            88999999999887531 11  1111    111122  245567778889999999998886      2443211 1  1


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      ........+.    +.+|+.++.||.+++.|.. |+.+...
T Consensus       325 ~~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        325 HRLLTAPVLY----NGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             CCcccCCEEE----CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            1112222222    4567788999999999976 6655544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.00016  Score=60.61  Aligned_cols=231  Identities=9%  Similarity=0.022  Sum_probs=124.7

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~   80 (351)
                      ++.+.+|.|.|+++ .  ..+..+..| ..+++++|.    .   .+..+++.|-..|.|.|||++..+... ....   
T Consensus       212 asl~nkiki~dlet-~--~~vssy~a~-~~~wSC~wD----l---de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a---  277 (463)
T KOG1645|consen  212 ASLGNKIKIMDLET-S--CVVSSYIAY-NQIWSCCWD----L---DERHVIYAGLQNGMVLVYDMRQPEGPLMELVA---  277 (463)
T ss_pred             eccCceEEEEeccc-c--eeeeheecc-CCceeeeec----c---CCcceeEEeccCceEEEEEccCCCchHhhhhh---
Confidence            57789999999998 4  456677777 899999999    3   345688888899999999998654321 1110   


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                    .--..+|..++..+.+...+.+.+      |+..+.+  +..|++.-..+
T Consensus       278 ------------------------------~~t~~pv~~i~~~~~n~~f~~ggl------Lv~~lt~--l~f~ei~~s~~  319 (463)
T KOG1645|consen  278 ------------------------------NVTINPVHKIAPVQPNKIFTSGGL------LVFALTV--LQFYEIVFSAE  319 (463)
T ss_pred             ------------------------------hhccCcceeecccCccccccccce------EEeeehh--hhhhhhhcccc
Confidence                                          011234555554432221133333      4444443  56777665333


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----------------CeEEEEEcccCcccCcccccccccccc
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----------------GAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------------g~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      .+.....+    ...+...++..++..+.++.....                 -.-.||..+..-.    -.+.-+-+..
T Consensus       320 ~~p~vlel----e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~----Gs~~~kl~t~  391 (463)
T KOG1645|consen  320 CLPCVLEL----EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF----GSKQTKLSTT  391 (463)
T ss_pred             CCCccccc----CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc----CCcccccccc
Confidence            33333332    234445566666655544443322                 0012222111100    0000000111


Q ss_pred             cEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          224 AVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .  .+--.++..+++ ++...+.+.+||..+.+          .+.++. -..+|.++.......+.+|+.- .|..++|
T Consensus       392 ~--ai~~~~~nn~iv~~gd~tn~lil~D~~s~e----------vvQ~l~-~~epv~Dicp~~~n~~syLa~L-Td~~v~I  457 (463)
T KOG1645|consen  392 Q--AIRAVEDNNYIVVVGDSTNELILQDPHSFE----------VVQTLA-LSEPVLDICPNDTNGSSYLALL-TDDRVHI  457 (463)
T ss_pred             c--ceeccccccEEEEecCCcceeEEeccchhh----------eeeecc-cCcceeecceeecCCcchhhhe-ecceEEE
Confidence            1  111233445554 45556889999998876          344442 2356878777664455566655 4557788


Q ss_pred             EecC
Q 048511          303 FEAP  306 (351)
Q Consensus       303 w~~~  306 (351)
                      |..+
T Consensus       458 yk~e  461 (463)
T KOG1645|consen  458 YKNE  461 (463)
T ss_pred             EecC
Confidence            8654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=0.0004  Score=61.61  Aligned_cols=250  Identities=11%  Similarity=0.053  Sum_probs=120.7

Q ss_pred             ceEEEEEccCC-----Cce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            6 NKIHLYRGQRT-----GKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         6 g~i~vw~~~~~-----~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      ..|+..|+...     ++.  .....+....-....|.++        |++++++.++ ||...|+.......      .
T Consensus         2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~n--------pngr~v~V~g-~geY~iyt~~~~r~------k   66 (443)
T PF04053_consen    2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHN--------PNGRFVLVCG-DGEYEIYTALAWRN------K   66 (443)
T ss_dssp             TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE---------TTSSEEEEEE-TTEEEEEETTTTEE------E
T ss_pred             CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEEC--------CCCCEEEEEc-CCEEEEEEccCCcc------c
Confidence            35677776652     221  1223344444567899999        8899888855 77777777332211      1


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT  158 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  158 (351)
                      .......++|...+. +++-.....+.+.+.+......-..+.++....  -.|.+      |...+ ++.|.+||+.+ 
T Consensus        67 ~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~I--f~G~L------L~~~~-~~~i~~yDw~~-  135 (443)
T PF04053_consen   67 AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKI--FGGNL------LGVKS-SDFICFYDWET-  135 (443)
T ss_dssp             EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEE--E-SSS------EEEEE-TTEEEEE-TTT-
T ss_pred             ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCcccceE--EcCcE------EEEEC-CCCEEEEEhhH-
Confidence            134667788888444 555555666777665554431111111110000  01444      55554 44899999999 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC------cccCcccccccccccccEEEEEeec
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV------DIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                       +..+..+..       ..|..+.|++++.+++..+.+ .+.+++.+..      +......+..+..-...|.+.+|..
T Consensus       136 -~~~i~~i~v-------~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~  206 (443)
T PF04053_consen  136 -GKLIRRIDV-------SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE  206 (443)
T ss_dssp             ---EEEEESS--------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET
T ss_pred             -cceeeEEec-------CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc
Confidence             777776651       238899999999999988765 5666665432      0000001222222245788888986


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      + -++.| +.. .++.  +.++..        ..+..   -..++.=+.+.+  ..+.+.....|+.|..+.++..
T Consensus       207 d-~fiYt-T~~-~lkY--l~~Ge~--------~~i~~---ld~~~yllgy~~--~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  207 D-CFIYT-TSN-HLKY--LVNGET--------GIIAH---LDKPLYLLGYLP--KENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             T-EEEEE--TT-EEEE--EETTEE--------EEEEE----SS--EEEEEET--TTTEEEEE-TT--EEEEE--HH
T ss_pred             C-EEEEE-cCC-eEEE--EEcCCc--------ceEEE---cCCceEEEEEEc--cCCEEEEEECCCCEEEEEECHH
Confidence            6 33333 333 6655  444431        12222   234566677776  6678888889999999988743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=0.00021  Score=62.42  Aligned_cols=228  Identities=15%  Similarity=0.140  Sum_probs=137.6

Q ss_pred             eEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-----------Cc
Q 048511           33 RSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-----------SS  101 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~  101 (351)
                      +-+.|+        |-|.||+|--.-| |.+|--.+...++...   ...+.-+.|+|..++|++-+           ..
T Consensus       214 tyv~wS--------P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  214 TYVRWS--------PKGTYLVTFHKQG-IALWGGESFDRIQRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeEEec--------CCceEEEEEeccc-eeeecCccHHHHHhcc---CCCceeeecCCccceEEEecCCccccCcccCCC
Confidence            568899        8899999998766 8899766555544443   34677888999999998832           22


Q ss_pred             eeEEEEEeccccccce-----------EEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511          102 YQVSVESLLIGHEDWV-----------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v-----------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      ..+.+|....|+...-           .-+.|+      .|+++      +|--.. ..|.||+...  -..+..-.   
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS------~DdKy------~Arm~~-~sisIyEtps--f~lld~Ks---  343 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS------HDDKY------FARMTG-NSISIYETPS--FMLLDKKS---  343 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEec------cCCce------eEEecc-ceEEEEecCc--eeeecccc---
Confidence            4556677666653321           235788      78888      776665 4588888765  11111100   


Q ss_pred             ccccccceEEEEEcCCCCEEE-----------------------------------------------EEe---------
Q 048511          171 LSHSALGFYGGHWSPDGRSIL-----------------------------------------------AHG---------  194 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~-----------------------------------------------~~~---------  194 (351)
                        -.-..|....|+|.++.||                                               .--         
T Consensus       344 --lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~  421 (698)
T KOG2314|consen  344 --LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK  421 (698)
T ss_pred             --cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence              1122344444444444333                                               210         


Q ss_pred             -eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccc
Q 048511          195 -YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       195 -~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                       .-..+-|+.++...    .++..+. -...|...+|-|.|..+++-+.   ..++.+|.+++..      ..+..+..+
T Consensus       422 g~f~n~eIfrireKd----Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~------~~~~lVk~~  490 (698)
T KOG2314|consen  422 GQFSNLEIFRIREKD----IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI------KKPSLVKEL  490 (698)
T ss_pred             ceEeeEEEEEeeccC----CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC------Cchhhhhhh
Confidence             01112333333322    1122221 2456778899999988776543   3678999887432      234444444


Q ss_pred             cccccceeEEEEeeeCCCcEEEEec---CCCeEEEEecCc
Q 048511          271 QVHGHDINCVTIIQGKGNHRFVSGA---DEKVARVFEAPL  307 (351)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~~~l~s~~---~dg~v~vw~~~~  307 (351)
                      ..  ...+.+.|+|  .|++++.+.   ..|.+.++|..-
T Consensus       491 dk--~~~N~vfwsP--kG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  491 DK--KFANTVFWSP--KGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             cc--cccceEEEcC--CCcEEEEEEecccccceEEEecch
Confidence            32  3478899999  898888665   578899999873

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.0004  Score=61.64  Aligned_cols=157  Identities=12%  Similarity=0.058  Sum_probs=93.0

Q ss_pred             ceEEEEecCCCCCCCCCc-ccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511          116 WVYSVQWEPPSTAPSDGV-SCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL  191 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  191 (351)
                      ......|+      ||++ .      ++..+.   +..|.++|+.+  ++.....      ..........|+|||+.++
T Consensus       189 ~~~~p~wS------pDG~~~------i~y~s~~~~~~~Iyv~dl~t--g~~~~lt------~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        189 LNIFPKWA------NKEQTA------FYYTSYGERKPTLYKYNLYT--GKKEKIA------SSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             CeEeEEEC------CCCCcE------EEEEEccCCCCEEEEEECCC--CcEEEEe------cCCCcEEeeEECCCCCEEE
Confidence            67789999      6776 3      443333   35688999887  4332221      1233455678999998776


Q ss_pred             EEe-e--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccceE
Q 048511          192 AHG-Y--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       192 ~~~-~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      ... .  +..|.++|+.++.      ...+..+........|+|||+.|+..+. .+  .|++.|+..+..        +
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------~  314 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKT------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------E  314 (419)
T ss_pred             EEEccCCCcEEEEEECCCCc------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--------E
Confidence            443 2  3568888887763      2223323322334579999988766553 23  677778876651        1


Q ss_pred             EeccccccccceeEEEEeeeCCCcEEEEecCC---------CeEEEEecCchhhhce
Q 048511          266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADE---------KVARVFEAPLSFLKTL  313 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------g~v~vw~~~~~~~~~~  313 (351)
                      .+. .  .+.  ....|+|  +|+.|+..+..         ..|.+.|+.+...+.|
T Consensus       315 rlt-~--~g~--~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        315 QVV-F--HGK--NNSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             eCc-c--CCC--cCceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            111 1  111  1248999  88888766543         3677778774444444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.20  E-value=0.00012  Score=64.65  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             EEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511            9 HLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA   87 (351)
Q Consensus         9 ~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   87 (351)
                      .+|+... ++++.+.... .....|.|++++        ++.+.|+.|+.||+|.+||...+....              
T Consensus       239 ciYE~~r-~klqrvsvtsipL~s~v~~ca~s--------p~E~kLvlGC~DgSiiLyD~~~~~t~~--------------  295 (545)
T PF11768_consen  239 CIYECSR-NKLQRVSVTSIPLPSQVICCARS--------PSEDKLVLGCEDGSIILYDTTRGVTLL--------------  295 (545)
T ss_pred             EEEEeec-CceeEEEEEEEecCCcceEEecC--------cccceEEEEecCCeEEEEEcCCCeeee--------------
Confidence            4566666 5555544332 567889999999        889999999999999999987652211              


Q ss_pred             eeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           88 SYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        88 ~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                             ....-..+.++|+      |+|.+      +++|+.-|.+.+||+.-
T Consensus       296 -----------------------~ka~~~P~~iaWH------p~gai------~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  296 -----------------------AKAEFIPTLIAWH------PDGAI------FVVGSEQGELQCFDMAL  330 (545)
T ss_pred             -----------------------eeecccceEEEEc------CCCcE------EEEEcCCceEEEEEeec
Confidence                                   1123347789999      78888      99999999999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.15  E-value=0.00022  Score=57.86  Aligned_cols=211  Identities=9%  Similarity=0.095  Sum_probs=114.2

Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      ..+.+-...+..++|.|     ..+.+      +++....+.|..++.+   +..+..+.+..    ....-.|++..++
T Consensus        15 ~~l~g~~~e~SGLTy~p-----d~~tL------faV~d~~~~i~els~~---G~vlr~i~l~g----~~D~EgI~y~g~~   76 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNP-----DTGTL------FAVQDEPGEIYELSLD---GKVLRRIPLDG----FGDYEGITYLGNG   76 (248)
T ss_dssp             EE-TT--S-EEEEEEET-----TTTEE------EEEETTTTEEEEEETT-----EEEEEE-SS-----SSEEEEEE-STT
T ss_pred             eECCCccCCccccEEcC-----CCCeE------EEEECCCCEEEEEcCC---CCEEEEEeCCC----CCCceeEEEECCC
Confidence            34566666799999995     34556      7888888888777753   67777776432    3457788998888


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccC-ccccc--c--c-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC--cccccc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDN-WQPQK--V--P-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK--NVASLM  259 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~-~~~~~--~--~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~  259 (351)
                      .++++.-.++.+.++++....... .....  .  + ..+...+-.++|.|.++.|+.+-+..-..||.+..  ......
T Consensus        77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~  156 (248)
T PF06977_consen   77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF  156 (248)
T ss_dssp             EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred             EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence            877777678999999984321100 00001  1  1 12445689999999888888787777777777654  110000


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeeccccccchhhhhHHhHHhhcceee
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATFQESSFHEDLQADVQILGANMS  339 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (351)
                       ......+.........+..++++| ..+++++-...+..|.++|..|+.+..+.=..+...-.. .  -..|+ |.++-
T Consensus       157 -~~~~~~~~~~~~~~~d~S~l~~~p-~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~-~--~~QpE-GIa~d  230 (248)
T PF06977_consen  157 -VSDDQDLDDDKLFVRDLSGLSYDP-RTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSK-D--IPQPE-GIAFD  230 (248)
T ss_dssp             -EEE-HHHH-HT--SS---EEEEET-TTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS------SEE-EEEE-
T ss_pred             -eccccccccccceeccccceEEcC-CCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccc-c--cCCcc-EEEEC
Confidence             000000111122344589999998 567888888999999999988887765543332211000 0  13477 77776


Q ss_pred             ecc
Q 048511          340 ALG  342 (351)
Q Consensus       340 ~~~  342 (351)
                      +-|
T Consensus       231 ~~G  233 (248)
T PF06977_consen  231 PDG  233 (248)
T ss_dssp             TT-
T ss_pred             CCC
Confidence            644

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=3.1e-06  Score=77.47  Aligned_cols=173  Identities=9%  Similarity=0.059  Sum_probs=121.2

Q ss_pred             EEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc
Q 048511          105 SVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS  184 (351)
Q Consensus       105 ~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~  184 (351)
                      +.|+.+..|+...+|++|+      .+.++      |+.|+..|.|+++++.+  |.......     .|...|+-+.-+
T Consensus      1092 r~w~~frd~~~~fTc~afs------~~~~h------L~vG~~~Geik~~nv~s--G~~e~s~n-----cH~SavT~vePs 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFS------GGTNH------LAVGSHAGEIKIFNVSS--GSMEESVN-----CHQSAVTLVEPS 1152 (1516)
T ss_pred             ccchhhhccccceeeEEee------cCCce------EEeeeccceEEEEEccC--cccccccc-----cccccccccccc
Confidence            5577788899999999999      77788      99999999999999998  65444443     899999999988


Q ss_pred             CCCCEEEEEeeCC--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511          185 PDGRSILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       185 ~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  262 (351)
                      .+|..+++.+.-.  ...+|++...    +.+.+++.+    -.++.|+.....-+.|+......|||+++.....    
T Consensus      1153 ~dgs~~Ltsss~S~PlsaLW~~~s~----~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~---- 1220 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASST----GGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ---- 1220 (1516)
T ss_pred             CCcceeeeeccccCchHHHhccccc----cCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHH----
Confidence            8998777665443  4779998663    245555543    3567888765544555555678999999886211    


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                        ..+....+..+.-++..|+|  +..+++   .||.  +||+. .+.+..|..++
T Consensus      1221 --tylt~~~~~~y~~n~a~FsP--~D~LIl---ndGv--LWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1221 --TYLTDTVTSSYSNNLAHFSP--CDTLIL---NDGV--LWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred             --HhcCcchhhhhhccccccCC--CcceEe---eCce--eeeeccHHHHhhhhhhe
Confidence              11222223334457888999  666665   3554  59976 55666665554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.06  E-value=0.0017  Score=53.00  Aligned_cols=185  Identities=12%  Similarity=0.007  Sum_probs=102.3

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      +.++.|+.||..+ |+.  +..+.. .+.+.....         ..+..++.++.|+.|..+|..+++.........   
T Consensus        43 ~~~~~l~~~d~~t-G~~--~W~~~~-~~~~~~~~~---------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---  106 (238)
T PF13360_consen   43 SGDGNLYALDAKT-GKV--LWRFDL-PGPISGAPV---------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---  106 (238)
T ss_dssp             ETTSEEEEEETTT-SEE--EEEEEC-SSCGGSGEE---------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---
T ss_pred             cCCCEEEEEECCC-CCE--EEEeec-cccccceee---------ecccccccccceeeeEecccCCcceeeeecccc---
Confidence            4678888888887 743  333332 222111111         234566666678889999988887655421100   


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW  162 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  162 (351)
                                                 ..... ........      .++..      ++.+..++.|..+|+++  |..
T Consensus       107 ---------------------------~~~~~-~~~~~~~~------~~~~~------~~~~~~~g~l~~~d~~t--G~~  144 (238)
T PF13360_consen  107 ---------------------------SPPAG-VRSSSSPA------VDGDR------LYVGTSSGKLVALDPKT--GKL  144 (238)
T ss_dssp             ---------------------------SCTCS-TB--SEEE------EETTE------EEEEETCSEEEEEETTT--TEE
T ss_pred             ---------------------------ccccc-cccccCce------EecCE------EEEEeccCcEEEEecCC--CcE
Confidence                                       00000 11111111      12444      77777799999999998  776


Q ss_pred             EEEEEecccccc-----ccceEEEEEcCCCCEEEEEeeCCe-EEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          163 MNVVTVGELSHS-----ALGFYGGHWSPDGRSILAHGYGGA-FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       163 ~~~~~~~~~~~~-----~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      +-..........     ...+..-....++ .++.+..++. +.+ |+.+++.     +-...  ...+.. ....++..
T Consensus       145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~-----~w~~~--~~~~~~-~~~~~~~~  214 (238)
T PF13360_consen  145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK-----LWSKP--ISGIYS-LPSVDGGT  214 (238)
T ss_dssp             EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE-----EEEEC--SS-ECE-CEECCCTE
T ss_pred             EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE-----EEEec--CCCccC-CceeeCCE
Confidence            666654221110     0112222222344 6777777775 555 9988752     11111  122222 13456778


Q ss_pred             EEEEeCCCcEEEEcCCCcc
Q 048511          237 LLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~  255 (351)
                      |+.++.++.|..||+++++
T Consensus       215 l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  215 LYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEEETTTEEEEEETTTTE
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            8888899999999999987

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.04  E-value=6.1e-05  Score=67.52  Aligned_cols=123  Identities=11%  Similarity=0.016  Sum_probs=92.9

Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +...+.--+++..+++++.|+.-|.+++|+...+.    .......+..+.+...+.+++..++|.|+..|.|.++-+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            33445556777889999999999999999988874    23334444555677778899888899999999999999877


Q ss_pred             ccccccCccceEEec-cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          254 NVASLMGENSWHEVA-RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ...     .....+. .-+.|...|+|++|++  ++..+.+|..-|.|.+-.++.
T Consensus       108 ~~p-----~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELP-----RDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCC-----CcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEech
Confidence            431     1111222 2234778899999999  999999999999999888775

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=5.2e-05  Score=63.46  Aligned_cols=122  Identities=14%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-  187 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-  187 (351)
                      .+.+|...|..++|+|     .+.-+      +..++.+..|+|.|+++  ...+..+.     .+ ..+++++|+.+. 
T Consensus       188 ~lp~~g~~IrdlafSp-----~~~GL------l~~asl~nkiki~dlet--~~~vssy~-----a~-~~~wSC~wDlde~  248 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSP-----FNEGL------LGLASLGNKIKIMDLET--SCVVSSYI-----AY-NQIWSCCWDLDER  248 (463)
T ss_pred             cccccchhhhhhccCc-----cccce------eeeeccCceEEEEeccc--ceeeehee-----cc-CCceeeeeccCCc
Confidence            4567888999999996     33336      88999999999999998  55555544     33 679999999876 


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCccccccccc--ccccEEEEEee------cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HFAAVMDISWS------RSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~v~~v~~s------p~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ++++.|-..|.|.+||++..+    .++..+.+  ...+|..++.-      +.+.+|+....+  +..|.+....
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~----~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~  318 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPE----GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA  318 (463)
T ss_pred             ceeEEeccCceEEEEEccCCC----chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence            477788889999999998765    33333333  22344444332      234445544433  5667765443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.99  E-value=0.0035  Score=51.99  Aligned_cols=199  Identities=7%  Similarity=0.027  Sum_probs=118.2

Q ss_pred             CccEEEEeeCCCc-EEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           48 ISILLVSSSQDKV-IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        48 ~~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      ....++.+-.-|+ ..+||..+++....+...            .+               +.+.||      -.|+   
T Consensus        16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------------~g---------------RHFyGH------g~fs---   59 (305)
T PF07433_consen   16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------------PG---------------RHFYGH------GVFS---   59 (305)
T ss_pred             CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------------CC---------------CEEecC------EEEc---
Confidence            4556666666554 667888887665433321            11               224566      3677   


Q ss_pred             CCCCCCcccCCCceeEEee-----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------
Q 048511          127 TAPSDGVSCQQPSSILSAS-----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------  195 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------  195 (351)
                         +||++      |.+.-     ..|.|-|||... ....+..+.     .+...--.+.+.||++.|+++..      
T Consensus        60 ---~dG~~------LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~-----s~GIGPHel~l~pDG~tLvVANGGI~Thp  124 (305)
T PF07433_consen   60 ---PDGRL------LYTTENDYETGRGVIGVYDAAR-GYRRIGEFP-----SHGIGPHELLLMPDGETLVVANGGIETHP  124 (305)
T ss_pred             ---CCCCE------EEEeccccCCCcEEEEEEECcC-CcEEEeEec-----CCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence               78887      77653     358899999993 144444444     44444556789999987776532      


Q ss_pred             ------------CCeEEEEEcccCcccCcccccc--c--ccccccEEEEEeecCCCEEEEEeCCC-------cEEEEcCC
Q 048511          196 ------------GGAFHLWRNVGVDIDNWQPQKV--P--SGHFAAVMDISWSRSSDYLLSVSHDQ-------TTRVFAPW  252 (351)
Q Consensus       196 ------------dg~i~~~d~~~~~~~~~~~~~~--~--~~~~~~v~~v~~sp~~~~l~s~~~dg-------~i~vwd~~  252 (351)
                                  +-.+.+.|..+++     .+.+  +  ..|.-.|.-+++.++|..++..-..|       -|.+++..
T Consensus       125 d~GR~kLNl~tM~psL~~ld~~sG~-----ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g  199 (305)
T PF07433_consen  125 DSGRAKLNLDTMQPSLVYLDARSGA-----LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG  199 (305)
T ss_pred             ccCceecChhhcCCceEEEecCCCc-----eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence                        2234455555553     2222  3  33667789999999987665544333       24444432


Q ss_pred             CccccccCccceEEecc----ccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC-chhhhce
Q 048511          253 KNVASLMGENSWHEVAR----PQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~~~  313 (351)
                      ..-         ..+..    ...-..-+-+|+++.  ++.++++.+ .-+.+.+||.. +.++...
T Consensus       200 ~~~---------~~~~~p~~~~~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  200 GAL---------RLLPAPEEQWRRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWDAATGRLLGSV  255 (305)
T ss_pred             Ccc---------eeccCChHHHHhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence            211         11111    112223488999998  777775555 78899999876 6666543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.92  E-value=0.011  Score=50.84  Aligned_cols=241  Identities=10%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC----------CCcEEEEecCCCccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ----------DKVIRIWKLALRGSSANT   75 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~   75 (351)
                      ..|++.|..+ .+......+.. ...+++++...-. .+++....+|+.|..          .|.|.++++.....    
T Consensus         2 s~i~l~d~~~-~~~~~~~~l~~-~E~~~s~~~~~l~-~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~----   74 (321)
T PF03178_consen    2 SSIRLVDPTT-FEVLDSFELEP-NEHVTSLCSVKLK-GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE----   74 (321)
T ss_dssp             -EEEEEETTT-SSEEEEEEEET-TEEEEEEEEEEET-TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------
T ss_pred             cEEEEEeCCC-CeEEEEEECCC-CceEEEEEEEEEc-CccccccCEEEEEecccccccccccCcEEEEEEEEcccc----
Confidence            4688999877 54344444553 3345555443000 000002567877742          27888888876400    


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                                              ....++..... ...++|++++-.       ++.       |+.+ ..+.|.+|++
T Consensus        75 ------------------------~~~~l~~i~~~-~~~g~V~ai~~~-------~~~-------lv~~-~g~~l~v~~l  114 (321)
T PF03178_consen   75 ------------------------NNFKLKLIHST-EVKGPVTAICSF-------NGR-------LVVA-VGNKLYVYDL  114 (321)
T ss_dssp             ---------------------------EEEEEEEE-EESS-EEEEEEE-------TTE-------EEEE-ETTEEEEEEE
T ss_pred             ------------------------cceEEEEEEEE-eecCcceEhhhh-------CCE-------EEEe-ecCEEEEEEc
Confidence                                    00111222221 246789999866       222       3333 3578999999


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                      ...+ .....-..    .....+.++...  ++++++|.....+.++..+.... .+..+.. ......++++.|-++++
T Consensus       115 ~~~~-~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~-~l~~va~-d~~~~~v~~~~~l~d~~  185 (321)
T PF03178_consen  115 DNSK-TLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN-KLILVAR-DYQPRWVTAAEFLVDED  185 (321)
T ss_dssp             ETTS-SEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE--EEEEEE-ESS-BEEEEEEEE-SSS
T ss_pred             cCcc-cchhhhee----cceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC-EEEEEEe-cCCCccEEEEEEecCCc
Confidence            9843 12222221    222356666654  56899999888888886654210 0111211 12345688999987777


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCcc-ceEEeccccccccceeEE---EEeee-CCC-----cEEEEecCCCeEEEE
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGEN-SWHEVARPQVHGHDINCV---TIIQG-KGN-----HRFVSGADEKVARVF  303 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~---~~~~~-~~~-----~~l~s~~~dg~v~vw  303 (351)
                      .++.+..+|.+.++............. .+.....+ ..+..|+++   ++.|. .+.     ..++.++.+|.|.+.
T Consensus       186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            899999999999998864321111111 23333333 233457777   44441 011     247777788888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.89  E-value=0.0023  Score=59.20  Aligned_cols=143  Identities=8%  Similarity=0.051  Sum_probs=77.4

Q ss_pred             eEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-------------------
Q 048511          141 ILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-------------------  196 (351)
Q Consensus       141 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------------------  196 (351)
                      .+.|+.++     .+..||..+  ..|...-.   +.........+.  -+++..+.|+.+                   
T Consensus       355 YviGG~~~~~~~~sve~Ydp~~--~~W~~~~~---mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        355 YAIGGQNGTNVERTIECYTMGD--DKWKMLPD---MPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             EEECCcCCCCCCceEEEEECCC--CeEEECCC---CCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            66666543     477788877  55543221   111111111222  256666666654                   


Q ss_pred             ----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC------CcEEEEcCCCccccccCccceEE
Q 048511          197 ----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD------QTTRVFAPWKNVASLMGENSWHE  266 (351)
Q Consensus       197 ----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~  266 (351)
                          ..+..||..+.+   |..+..+....... +++ .-++++.+.|+.+      ..+..||..+..       .|..
T Consensus       428 ~~~~~~ve~YDP~td~---W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~-------~W~~  495 (557)
T PHA02713        428 THSSNKVIRYDTVNNI---WETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN-------GWEL  495 (557)
T ss_pred             ccccceEEEECCCCCe---EeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCC-------CeeE
Confidence                247778887754   34444332222111 122 2356676777654      246788887621       4777


Q ss_pred             eccccccccceeEEEEeeeCCCcEEEEecCCC--eEEEEecC
Q 048511          267 VARPQVHGHDINCVTIIQGKGNHRFVSGADEK--VARVFEAP  306 (351)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--~v~vw~~~  306 (351)
                      +..+....... .++..   ++.+.+.||.|+  .+-.||+.
T Consensus       496 ~~~m~~~r~~~-~~~~~---~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        496 ITTTESRLSAL-HTILH---DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             ccccCcccccc-eeEEE---CCEEEEEeeecceeehhhcCcc
Confidence            76665443323 23332   588999999888  66777766

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00042  Score=63.79  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=75.8

Q ss_pred             eEEEeeCCcccCCCCCccEEEEee----CCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           33 RSLDFSLPVCTSGEAISILLVSSS----QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      +-..|+        |...+||.++    ..|.|.||- +++++......  +-...+++|+|..-+|+.|-..+.+.++.
T Consensus        19 ti~SWH--------PsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   19 TISSWH--------PSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEFVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             cccccC--------CCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHHHHhhccccceeEEEe
Confidence            445688        6677888775    457888873 44443322222  23566799999999999988877776654


Q ss_pred             e--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511          109 L--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       109 ~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      .        ...|..+|..+.|+      ++|..      ++++..-|.|.+|....
T Consensus        88 ~~~~e~htv~~th~a~i~~l~wS------~~G~~------l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   88 TNTTETHTVVETHPAPIQGLDWS------HDGTV------LMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             cCCceeeeeccCCCCCceeEEec------CCCCe------EEEcCCCceeEEEEeee
Confidence            3        45688999999999      89999      99999999999998873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.88  E-value=0.0056  Score=58.90  Aligned_cols=199  Identities=9%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+.++.|..+...++++...+.+.+...       ...-...|.+++|+      +|.+.      ++..+..+++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS------~Dee~------l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWS------PDEEL------LALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeec------CCCcE------EEEEeCCcEEEEE
Confidence            46778888888887777766666644321       22235679999999      78888      8888777776654


Q ss_pred             ecc----CC---------Ccc-----eEE---EEEe-------ccccc---------cccceEEEEEcCCCCEEEEEe--
Q 048511          154 QPE----KT---------TGI-----WMN---VVTV-------GELSH---------SALGFYGGHWSPDGRSILAHG--  194 (351)
Q Consensus       154 d~~----~~---------~~~-----~~~---~~~~-------~~~~~---------~~~~i~~i~~~~~~~~l~~~~--  194 (351)
                      .-.    ..         .++     +-+   .+..       .+...         ....=++|.|--||.++++..  
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            321    00         000     000   1100       00000         011124589999999999844  


Q ss_pred             --eC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEec
Q 048511          195 --YG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       195 --~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                        .+ ..|++||.+. .     +-..-....+.-.+++|-|.|..+++-.   .|+.|.+|..+....       ....-
T Consensus       217 ~~~~~RkirV~drEg-~-----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-------g~f~l  283 (1265)
T KOG1920|consen  217 SETGTRKIRVYDREG-A-----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-------GEFVL  283 (1265)
T ss_pred             ccCCceeEEEecccc-h-----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-------ccccc
Confidence              23 7899999873 1     1222222233445789999999988764   356799988644331       11122


Q ss_pred             cccccccceeEEEEeeeCCCcEEEE---ecCCCeEEEEecC
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVS---GADEKVARVFEAP  306 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s---~~~dg~v~vw~~~  306 (351)
                      ........+..++|+.  ++..|++   ......|++|-..
T Consensus       284 ~~p~de~~ve~L~Wns--~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  284 PFPLDEKEVEELAWNS--NSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             CCcccccchheeeecC--CCCceeeeecccccceEEEEEec
Confidence            2223333489999998  8888887   5666679999764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.85  E-value=0.0084  Score=52.62  Aligned_cols=221  Identities=10%  Similarity=0.050  Sum_probs=109.4

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +.+..-++...++|++++.+        . =.++|.|..+|.+.|.|++....+.......                   
T Consensus        76 f~P~~l~~~~~g~vtal~~S--------~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------  127 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNS--------D-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------  127 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE---------B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------
T ss_pred             cCchhheeccCCcEeEEecC--------C-CcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------
Confidence            55566667778999999998        3 4599999999999999997665433211100                   


Q ss_pred             CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC-CCcceEEEEEeccccccccc
Q 048511           99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK-TTGIWMNVVTVGELSHSALG  177 (351)
Q Consensus        99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~  177 (351)
                              ...-......|+++.|..-... .|+   ....++++|...|.+.+|.+.. ..+.+...+.-. ...+...
T Consensus       128 --------~~~~~~~~~~vt~ieF~vm~~~-~D~---ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~  194 (395)
T PF08596_consen  128 --------SFLSKSSSSYVTSIEFSVMTLG-GDG---YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSP  194 (395)
T ss_dssp             ----------T-SS----EEEEEEEEEE-T-TSS---SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS--
T ss_pred             --------cccccccccCeeEEEEEEEecC-CCc---ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeec-cccCCCc
Confidence                    0001123345777777621110 121   1234588999999999998863 223333222211 1134445


Q ss_pred             eEEEE-EcCC--------------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee-----
Q 048511          178 FYGGH-WSPD--------------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS-----  231 (351)
Q Consensus       178 i~~i~-~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----  231 (351)
                      |..+. ++.+                    -+.+++...+..++++...+.+.    ..+.+ ...-....+++-     
T Consensus       195 i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~----~~K~~-~~~~~~~~~~vv~~~~~  269 (395)
T PF08596_consen  195 ILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKG----AHKSF-DDPFLCSSASVVPTISR  269 (395)
T ss_dssp             --EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---E----EEEE--SS-EEEEEEEEEEEE-E
T ss_pred             eEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcc----cceee-ccccccceEEEEeeccc
Confidence            55544 3211                    12345556678899998876531    12222 222233344453     


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc----cccceeEEEEeeeCCCcEEEEecCC
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV----HGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ..+..|++-..+|.|++|.+...+          ++.....    ....+....+++  +|+.++-.+..
T Consensus       270 ~~~~~Lv~l~~~G~i~i~SLP~Lk----------ei~~~~l~~~~d~~~~~~ssis~--~Gdi~~~~gps  327 (395)
T PF08596_consen  270 NGGYCLVCLFNNGSIRIYSLPSLK----------EIKSVSLPPPLDSRRLSSSSISR--NGDIFYWTGPS  327 (395)
T ss_dssp             EEEEEEEEEETTSEEEEEETTT------------EEEEEE-SS---HHHHTT-EE-T--TS-EEEE-SSS
T ss_pred             CCceEEEEEECCCcEEEEECCCch----------HhhcccCCCccccccccccEECC--CCCEEEEeCcc
Confidence            356678888899999999997766          3332222    223356677777  78877665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=6.3e-05  Score=41.19  Aligned_cols=38  Identities=37%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      .+...+.+|...|+++.|.        +.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFS--------PDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEEC--------CCCCEEEEecCCCeEEEcC
Confidence            4556778899999999999        7778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.0042  Score=57.55  Aligned_cols=262  Identities=9%  Similarity=-0.018  Sum_probs=130.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee---cc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ---ST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~   78 (351)
                      |-.-|.+.+|...+ .+  .-.....|..+|..+.|+        ++|..|+|+..-|.|.+|...-....+...   ..
T Consensus        77 gwe~g~~~v~~~~~-~e--~htv~~th~a~i~~l~wS--------~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~he  145 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNT-TE--THTVVETHPAPIQGLDWS--------HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHE  145 (1416)
T ss_pred             ccccceeEEEecCC-ce--eeeeccCCCCCceeEEec--------CCCCeEEEcCCCceeEEEEeeeccccccchhhhhH
Confidence            44567889999887 32  222334799999999999        899999999999999999887433322111   11


Q ss_pred             cccceeeeE--eeecCCe------EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           79 YRKEVISLA--SYIEGPV------LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        79 ~~~~~~~~~--~~~~~~~------l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      .+...+...  .++++.-      .++.+.+..+......+.. ..-.++.-+  +  .++|..      |..++.+|+|
T Consensus       146 l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~-~a~rs~~ks--g--v~~g~~------F~~~~~~GtV  214 (1416)
T KOG3617|consen  146 LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKES-LAERSDEKS--G--VPKGTE------FLFAGKSGTV  214 (1416)
T ss_pred             hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccc-hhhcccccc--C--CCCCcE------EEEEcCCceE
Confidence            122333222  3334221      1122222111100000000 000011101  0  167777      8899999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-Cc---------------------
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VD---------------------  208 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~---------------------  208 (351)
                      +--|-.   +......+....       ..+-|.+...-+.+-..+-++.++-... +.                     
T Consensus       215 yyvdq~---g~~~~V~k~dS~-------vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA  284 (1416)
T KOG3617|consen  215 YYVDQN---GRQRTVHKLDSE-------VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIA  284 (1416)
T ss_pred             EEEcCC---CcEEEEEEccch-------HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccc
Confidence            887744   333333321110       1122222222222222222222221110 00                     


Q ss_pred             ------ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc-cCccceEEeccccccccceeEEE
Q 048511          209 ------IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL-MGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       209 ------~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                            .-.......+. ....+++++++..+..|..|...|.+.+|--....... .+...|. +.........|+.+.
T Consensus       285 ~sEssGvLr~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~-l~~~~e~~g~I~~i~  362 (1416)
T KOG3617|consen  285 CSESSGVLRKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWT-LNGKRESLGKISLIR  362 (1416)
T ss_pred             cccccccccCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEE-ecCchhhccceEEEE
Confidence                  00000111111 24568999999999999999999999999644332111 0123343 223333445689999


Q ss_pred             EeeeCCCcEEEEecCCCe
Q 048511          282 IIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~dg~  299 (351)
                      |.|  -...++.-+....
T Consensus       363 Wg~--~k~~~avn~~~~v  378 (1416)
T KOG3617|consen  363 WGP--IKSTAAVNTEEDV  378 (1416)
T ss_pred             ecc--ccchhhhhhhhhe
Confidence            988  4444444444333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.75  E-value=0.016  Score=47.27  Aligned_cols=217  Identities=13%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ..+.+-...+..|+|.        ++ +.++++....+.|...+.. ++.+..+.                         
T Consensus        15 ~~l~g~~~e~SGLTy~--------pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-------------------------   60 (248)
T PF06977_consen   15 KPLPGILDELSGLTYN--------PDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-------------------------   60 (248)
T ss_dssp             EE-TT--S-EEEEEEE--------TTTTEEEEEETTTTEEEEEETT---EEEEEE-------------------------
T ss_pred             eECCCccCCccccEEc--------CCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-------------------------
Confidence            3555666679999999        55 4566666667777666653 33332221                         


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc----ceEEEEEeccccccccc
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG----IWMNVVTVGELSHSALG  177 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~  177 (351)
                              +.+ .+..-.|++.      .++.+      +++--.++.+.++++.....    .....+.+.....++..
T Consensus        61 --------l~g-~~D~EgI~y~------g~~~~------vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G  119 (248)
T PF06977_consen   61 --------LDG-FGDYEGITYL------GNGRY------VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKG  119 (248)
T ss_dssp             ---------SS--SSEEEEEE-------STTEE------EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS-
T ss_pred             --------CCC-CCCceeEEEE------CCCEE------EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcc
Confidence                    233 2457788888      67766      66655689999999844211    11233343333345567


Q ss_pred             eEEEEEcCCCCEEEEEeeCCeEEEEEccc--CcccC----cccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEc
Q 048511          178 FYGGHWSPDGRSILAHGYGGAFHLWRNVG--VDIDN----WQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFA  250 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~----~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd  250 (351)
                      +-.++|+|.++.|+++-...-..+|.++.  .....    .............+.+++++|.. ++++.......|..+|
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence            89999999988888877776677777654  11000    00001011233457889999954 5666677788899999


Q ss_pred             CCCccccccCccceEEecc-ccc---cccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          251 PWKNVASLMGENSWHEVAR-PQV---HGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      . .++.     .....+.. ..+   .-...-.|+|.+  +|.+.+++ +-+..++|
T Consensus       200 ~-~G~~-----~~~~~L~~g~~gl~~~~~QpEGIa~d~--~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  200 R-QGRV-----VSSLSLDRGFHGLSKDIPQPEGIAFDP--DGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             T-T--E-----EEEEE-STTGGG-SS---SEEEEEE-T--T--EEEEE-TTTEEEEE
T ss_pred             C-CCCE-----EEEEEeCCcccCcccccCCccEEEECC--CCCEEEEc-CCceEEEe
Confidence            4 3331     11111111 000   012367889988  77655554 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=6.7e-05  Score=41.09  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=32.3

Q ss_pred             cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          214 PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      +...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.69  E-value=0.0017  Score=61.18  Aligned_cols=141  Identities=8%  Similarity=-0.000  Sum_probs=93.1

Q ss_pred             eEE-eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-----CCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          141 ILS-ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-----DGRSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       141 l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                      |+. ......|+-.|++.  |+.+....+..    ..+|..++-..     .....+.|-.+..+..||.+-...   ++
T Consensus       496 il~~~~~~~~ly~mDLe~--GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~  566 (794)
T PF08553_consen  496 ILLDPNNPNKLYKMDLER--GKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KL  566 (794)
T ss_pred             EeecCCCCCceEEEecCC--CcEEEEeecCC----CcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ce
Confidence            444 34567788889998  88888887422    22344443221     133456788889999999986531   22


Q ss_pred             c----cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511          215 Q----KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR  290 (351)
Q Consensus       215 ~----~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  290 (351)
                      +    +.+ .......+++-+.+| +||+|+.+|.||+||-. +.         +....+.+-+.+|..|..+.  ||++
T Consensus       567 v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~---------~AKT~lp~lG~pI~~iDvt~--DGkw  632 (794)
T PF08553_consen  567 VDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK---------RAKTALPGLGDPIIGIDVTA--DGKW  632 (794)
T ss_pred             eecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch---------hhhhcCCCCCCCeeEEEecC--CCcE
Confidence            2    111 234456777777776 68999999999999943 22         13334456778999999999  9999


Q ss_pred             EEEecCCCeEEEEec
Q 048511          291 FVSGADEKVARVFEA  305 (351)
Q Consensus       291 l~s~~~dg~v~vw~~  305 (351)
                      |++.+.. .+.+++.
T Consensus       633 ilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  633 ILATCKT-YLLLIDT  646 (794)
T ss_pred             EEEeecc-eEEEEEE
Confidence            8877655 5566663

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00024  Score=63.12  Aligned_cols=95  Identities=17%  Similarity=0.044  Sum_probs=74.1

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE-EEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM-DISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      ...+..+.|+|.-..+|.+..+|.|.++.++-      +.+.++.-|...++ +++|.|||+.||.|=.||+|++.|+..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEecc------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            34578899999999999999999999998874      44666665666666 999999999999999999999999988


Q ss_pred             ccccccCccceEEeccccccccceeEEEEee
Q 048511          254 NVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +..         ....+.....+|.++-|.+
T Consensus        94 ~~~---------l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGR---------LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCc---------eeccccccccchheeeccc
Confidence            872         1111223344577777754

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.65  E-value=0.0081  Score=54.79  Aligned_cols=117  Identities=10%  Similarity=0.006  Sum_probs=72.2

Q ss_pred             CCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCc-c
Q 048511          185 PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGE-N  262 (351)
Q Consensus       185 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~  262 (351)
                      ++|++...  .++.|.+.|..+........+..+. -......+.++|||+++++++. +.+|.|.|+...+...... .
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            35665554  2567888888761000012233332 3445688999999999876654 8999999998765211000 0


Q ss_pred             -ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          263 -SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       263 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                       .-..+..... +......+|.+  +|....+---|..|-.|++..
T Consensus       363 ~~~~vvaevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence             0001222222 33345678888  788888999999999999774

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.64  E-value=0.015  Score=51.55  Aligned_cols=63  Identities=11%  Similarity=0.068  Sum_probs=42.0

Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ++.+....+....++.+.+.+-...        ..+. ..+++..++.||+++++|.-..+|.+.+....-.
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSF--------KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccc--------cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            4445555555556666665443221        1122 2457999999999999999999999988876444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.57  E-value=0.029  Score=48.27  Aligned_cols=180  Identities=11%  Similarity=0.013  Sum_probs=103.2

Q ss_pred             ceEEEEEccCC----CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            6 NKIHLYRGQRT----GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         6 g~i~vw~~~~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |.|.++++...    .+++.+... ...++|++|+-.         ++ +|+.+. .+.|.+|++...+.+...      
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~---------~~-~lv~~~-g~~l~v~~l~~~~~l~~~------  123 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF---------NG-RLVVAV-GNKLYVYDLDNSKTLLKK------  123 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE---------TT-EEEEEE-TTEEEEEEEETTSSEEEE------
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh---------CC-EEEEee-cCEEEEEEccCcccchhh------
Confidence            99999999882    245554444 357899999877         24 344443 478999999877611110      


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                ..+. ....+.++...        +++      ++.|.....+.++..+.. ..
T Consensus       124 --------------------------~~~~-~~~~i~sl~~~--------~~~------I~vgD~~~sv~~~~~~~~-~~  161 (321)
T PF03178_consen  124 --------------------------AFYD-SPFYITSLSVF--------KNY------ILVGDAMKSVSLLRYDEE-NN  161 (321)
T ss_dssp             --------------------------EEE--BSSSEEEEEEE--------TTE------EEEEESSSSEEEEEEETT-TE
T ss_pred             --------------------------heec-ceEEEEEEecc--------ccE------EEEEEcccCEEEEEEEcc-CC
Confidence                                      1111 12257777765        336      889988888888866642 22


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------CcccccccccccccEEEE---Eeec
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------NWQPQKVPSGHFAAVMDI---SWSR  232 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------~~~~~~~~~~~~~~v~~v---~~sp  232 (351)
                      .+..+..   ......++++.|-++++.++++..+|.+.++........      .+.....+. ....|+++   ++.|
T Consensus       162 ~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  162 KLILVAR---DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP  237 (321)
T ss_dssp             -EEEEEE---ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred             EEEEEEe---cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence            2222221   233556888888866679999999999999988632111      011112222 23456666   5555


Q ss_pred             C--C------CEEEEEeCCCcEEEE
Q 048511          233 S--S------DYLLSVSHDQTTRVF  249 (351)
Q Consensus       233 ~--~------~~l~s~~~dg~i~vw  249 (351)
                      .  +      ..++.++.+|.|.+.
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence            1  2      137777889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.54  E-value=0.017  Score=53.58  Aligned_cols=215  Identities=11%  Similarity=0.122  Sum_probs=120.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC------CcEEEEecCCCcccceeeccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD------KVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------g~i~iwd~~~~~~~~~~~~~~   79 (351)
                      ..+..||..+ +.+.....+.... .-.+++..         ++...++||.|      .++..||....+... .....
T Consensus       301 ~~ve~yd~~~-~~w~~~a~m~~~r-~~~~~~~~---------~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~  368 (571)
T KOG4441|consen  301 RSVECYDPKT-NEWSSLAPMPSPR-CRVGVAVL---------NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN  368 (571)
T ss_pred             ceeEEecCCc-CcEeecCCCCccc-ccccEEEE---------CCEEEEEccccCCCcccceEEEecCCCCceec-cCCcc
Confidence            4688899998 7777777776433 34455555         36788899998      346777877766433 11111


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEE------------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSV------------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ......-....+|.+.++|+.++.-.+            |.................     -++.+      .+.|+.+
T Consensus       369 ~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-----~~g~i------Yi~GG~~  437 (571)
T KOG4441|consen  369 TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-----LGGKL------YIIGGGD  437 (571)
T ss_pred             CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE-----ECCEE------EEEcCcC
Confidence            222223334557888888887754321            111111222222222221     35666      7888754


Q ss_pred             ------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCccccc
Q 048511          148 ------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       148 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~  216 (351)
                            ..+..||..+  ..|...-.+..   ...... ++ .-++.+.+.|+.|+     +|..||..+.+   |..+.
T Consensus       438 ~~~~~l~sve~YDP~t--~~W~~~~~M~~---~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~---W~~v~  507 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPET--NTWTLIAPMNT---RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ---WTMVA  507 (571)
T ss_pred             CCccccceEEEEcCCC--CceeecCCccc---ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc---eeEcc
Confidence                  4578888888  65554333211   111111 22 23677788888776     37778887765   44454


Q ss_pred             ccccccccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCcc
Q 048511          217 VPSGHFAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNV  255 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~  255 (351)
                      .+......+..+.+  +++..++|+.|+     +|..||..+.+
T Consensus       508 ~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  508 PMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            44433333322222  566778888775     57777776553

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.54  E-value=0.009  Score=41.38  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511           32 IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI  111 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (351)
                      |++|++.    .-.+...+.|+.|+.|..||+|+-..  .+.++.                                   
T Consensus         2 V~al~~~----d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-----------------------------------   40 (111)
T PF14783_consen    2 VTALCLF----DFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-----------------------------------   40 (111)
T ss_pred             eeEEEEE----ecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-----------------------------------
Confidence            5677766    11112346899999999999998652  221111                                   


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---CC-
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---DG-  187 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~-  187 (351)
                       -.+.|.++.-.      .. ..      |+.+..+|+|-+|+-..  ..|...        ....+.++++..   +| 
T Consensus        41 -e~~~v~~L~~~------~~-~~------F~Y~l~NGTVGvY~~~~--RlWRiK--------SK~~~~~~~~~D~~gdG~   96 (111)
T PF14783_consen   41 -ETDKVTSLCSL------GG-GR------FAYALANGTVGVYDRSQ--RLWRIK--------SKNQVTSMAFYDINGDGV   96 (111)
T ss_pred             -cccceEEEEEc------CC-CE------EEEEecCCEEEEEeCcc--eeeeec--------cCCCeEEEEEEcCCCCCc
Confidence             34568888777      23 44      89999999999998755  333322        122355555432   33 


Q ss_pred             CEEEEEeeCCeEE
Q 048511          188 RSILAHGYGGAFH  200 (351)
Q Consensus       188 ~~l~~~~~dg~i~  200 (351)
                      ..|++|-.+|.|-
T Consensus        97 ~eLI~GwsnGkve  109 (111)
T PF14783_consen   97 PELIVGWSNGKVE  109 (111)
T ss_pred             eEEEEEecCCeEE
Confidence            3788888888774

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.046  Score=46.24  Aligned_cols=110  Identities=10%  Similarity=0.006  Sum_probs=67.6

Q ss_pred             ceEEEEEcCCCCEEEEEeeC-CeEEEEEccc--CcccCcccccccccccccEEEEEeecCCCEEEEEeCCC-cEEEEcCC
Q 048511          177 GFYGGHWSPDGRSILAHGYG-GAFHLWRNVG--VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ-TTRVFAPW  252 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~--~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg-~i~vwd~~  252 (351)
                      .-..++||||++.|+.+... +.|+-|++..  ...........+....+..-.++...+|.+.+++-.+| .|.+|+..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            34679999999888877765 8888888863  11111111222223445666788888888876555554 89999987


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                       ++          .+.....+...+++++|--..-..+++++...
T Consensus       244 -G~----------l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         244 -GK----------LLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             -Cc----------EEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence             54          33333344456888888652224455555544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.48  E-value=0.031  Score=44.80  Aligned_cols=143  Identities=8%  Similarity=-0.059  Sum_probs=87.0

Q ss_pred             ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCC
Q 048511           49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA  128 (351)
Q Consensus        49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  128 (351)
                      ..+++.|+..+.+.--|..++....+...                                    ...+.+-+..     
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il------------------------------------g~RiE~sa~v-----   61 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------------------------------------GVRIECSAIV-----   61 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh------------------------------------CceeeeeeEE-----
Confidence            56777888888888888877765543321                                    1223332222     


Q ss_pred             CCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc
Q 048511          129 PSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD  208 (351)
Q Consensus       129 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~  208 (351)
                        -+++      ++.|...|.+++.+..+  +.....+....    .-. ......+++..+..++.|+..+..|.++. 
T Consensus        62 --vgdf------VV~GCy~g~lYfl~~~t--Gs~~w~f~~~~----~vk-~~a~~d~~~glIycgshd~~~yalD~~~~-  125 (354)
T KOG4649|consen   62 --VGDF------VVLGCYSGGLYFLCVKT--GSQIWNFVILE----TVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTY-  125 (354)
T ss_pred             --ECCE------EEEEEccCcEEEEEecc--hhheeeeeehh----hhc-cceEEcCCCceEEEecCCCcEEEeccccc-
Confidence              2445      89999999999999999  65444444211    111 23455789999999999999999999886 


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                          .++...+-..+.-.+=+..|....|..+...|.+.--...
T Consensus       126 ----~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  126 ----GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             ----ceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence                5566655433333333445522234444445554443433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.021  Score=46.64  Aligned_cols=180  Identities=10%  Similarity=0.109  Sum_probs=117.4

Q ss_pred             ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      +.+-...|.++.|+      |+.+.      |++......-.++=-..  |..+.++++...    ...-.|.+..++++
T Consensus        81 i~g~~~nvS~LTyn------p~~rt------LFav~n~p~~iVElt~~--GdlirtiPL~g~----~DpE~Ieyig~n~f  142 (316)
T COG3204          81 ILGETANVSSLTYN------PDTRT------LFAVTNKPAAIVELTKE--GDLIRTIPLTGF----SDPETIEYIGGNQF  142 (316)
T ss_pred             cccccccccceeeC------CCcce------EEEecCCCceEEEEecC--CceEEEeccccc----CChhHeEEecCCEE
Confidence            45555669999999      55565      66665555555554444  888888875432    23456788888888


Q ss_pred             EEEEeeCCeEEEEEcccCcc-cCc----ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511          190 ILAHGYGGAFHLWRNVGVDI-DNW----QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       190 l~~~~~dg~i~~~d~~~~~~-~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      .++--.++.+.++.+..... ...    -++............++|.|..+.|+.+-+-.-+.||.+.......      
T Consensus       143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l------  216 (316)
T COG3204         143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL------  216 (316)
T ss_pred             EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc------
Confidence            88888889999988755421 000    0111111224567889999998888888888888888776433111      


Q ss_pred             EEecccccc-------ccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceee
Q 048511          265 HEVARPQVH-------GHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH  315 (351)
Q Consensus       265 ~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~  315 (351)
                       .......+       -..|..+.|.+ ..+.+++-+.+++.+.-.|..|..+..+.-
T Consensus       217 -~~~~~~~~~~~~~~f~~DvSgl~~~~-~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL  272 (316)
T COG3204         217 -SVHASLDPTADRDLFVLDVSGLEFNA-ITNSLLVLSDESRRLLEVDLSGEVIELLSL  272 (316)
T ss_pred             -ccccccCcccccceEeeccccceecC-CCCcEEEEecCCceEEEEecCCCeeeeEEe
Confidence             11111111       23478888887 457888888899999999999887665543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.46  E-value=0.084  Score=48.25  Aligned_cols=108  Identities=11%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE------------------eCCCcEEEEc
Q 048511          189 SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV------------------SHDQTTRVFA  250 (351)
Q Consensus       189 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~------------------~~dg~i~vwd  250 (351)
                      .+++++.+|.+..+|.++++.     +-.....   ...+..+|  ..++.+                  ..+|.+.-.|
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~-----~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKL-----ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             EEEEECCCceEEEEECCCCcE-----eeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence            577888899999999999853     2221100   11123333  122221                  2357788888


Q ss_pred             CCCccccccCccceEEecccccc----ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          251 PWKNVASLMGENSWHEVARPQVH----GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      ..+++      ..|+.-.....+    +.+...-....  .+..|+.++.||.|+.+|.. |+.+-+++
T Consensus       373 ~~tG~------~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         373 PKTGK------VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCCCc------EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            87776      345432210000    01111111111  46788888999999999976 77776654

The alignment model contains an 8-bladed beta-propeller.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.001  Score=59.22  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcCCCCEEEEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSPDGRSILAH  193 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~  193 (351)
                      ..+.-+.|+      |...+      +|.+..+|.|.+..+.-   +.+-++.     .+...++ +++|.|||+.|++|
T Consensus        21 ~~i~~~ewn------P~~dL------iA~~t~~gelli~R~n~---qRlwtip-----~p~~~v~~sL~W~~DGkllaVg   80 (665)
T KOG4640|consen   21 INIKRIEWN------PKMDL------IATRTEKGELLIHRLNW---QRLWTIP-----IPGENVTASLCWRPDGKLLAVG   80 (665)
T ss_pred             cceEEEEEc------Cccch------hheeccCCcEEEEEecc---ceeEecc-----CCCCccceeeeecCCCCEEEEE
Confidence            357788999      67777      99999999999988773   2223333     3444455 99999999999999


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      -.||+|++.|.+++..    .......-...|.++-|.+
T Consensus        81 ~kdG~I~L~Dve~~~~----l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGR----LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCc----eeccccccccchheeeccc
Confidence            9999999999998742    2222222445677777864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.019  Score=39.87  Aligned_cols=105  Identities=10%  Similarity=0.005  Sum_probs=66.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG  196 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  196 (351)
                      |+++++.+..   .+|.     +-|++|+.|..|++|+-..    .+..+.      ....|.+++-... ..++.+-.+
T Consensus         2 V~al~~~d~d---~dg~-----~eLlvGs~D~~IRvf~~~e----~~~Ei~------e~~~v~~L~~~~~-~~F~Y~l~N   62 (111)
T PF14783_consen    2 VTALCLFDFD---GDGE-----NELLVGSDDFEIRVFKGDE----IVAEIT------ETDKVTSLCSLGG-GRFAYALAN   62 (111)
T ss_pred             eeEEEEEecC---CCCc-----ceEEEecCCcEEEEEeCCc----EEEEEe------cccceEEEEEcCC-CEEEEEecC
Confidence            5667766422   2222     2399999999999998654    333332      3446777776655 668889999


Q ss_pred             CeEEEEEcccCcccCcccccccccccccEEEEEeec---CC-CEEEEEeCCCcEEE
Q 048511          197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR---SS-DYLLSVSHDQTTRV  248 (351)
Q Consensus       197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~-~~l~s~~~dg~i~v  248 (351)
                      |+|-+|+-...       +-..+ ....++++++..   +| .-|++|-.+|.|-+
T Consensus        63 GTVGvY~~~~R-------lWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   63 GTVGVYDRSQR-------LWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CEEEEEeCcce-------eeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            99999976442       22222 223366665543   23 35888888887743

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.075  Score=45.00  Aligned_cols=153  Identities=9%  Similarity=0.040  Sum_probs=84.2

Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-----------CCeEEEEEcccCcccCccccccc
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----------GGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      +.+++.+.  +..+..+..............+...|+|.+.++...           -|.|+.+|. .+     ..++.+
T Consensus        87 ~~~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-----~~~~l~  158 (307)
T COG3386          87 VRLLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-----GVVRLL  158 (307)
T ss_pred             cEEEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-----CEEEee
Confidence            66677654  333222221111222345567888899886665444           133444443 22     234444


Q ss_pred             ccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ..+-..-+.|+||||++.|+.+.. .+.|.-|++.......  ... .............-.++...  +|.+.+++-.+
T Consensus       159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~-~~~~~~~~~~G~PDG~~vDa--dG~lw~~a~~~  233 (307)
T COG3386         159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGR-RGFVDFDEEPGLPDGMAVDA--DGNLWVAAVWG  233 (307)
T ss_pred             cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCc-ceEEEccCCCCCCCceEEeC--CCCEEEecccC
Confidence            444555678999999988776654 5788888775311100  000 11111111223355667776  77777655555


Q ss_pred             C-eEEEEecCchhhhceee
Q 048511          298 K-VARVFEAPLSFLKTLNH  315 (351)
Q Consensus       298 g-~v~vw~~~~~~~~~~~~  315 (351)
                      | .|.+|+..++.+..+.-
T Consensus       234 g~~v~~~~pdG~l~~~i~l  252 (307)
T COG3386         234 GGRVVRFNPDGKLLGEIKL  252 (307)
T ss_pred             CceEEEECCCCcEEEEEEC
Confidence            4 99999998877766543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.013  Score=55.31  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      .+.|-.++.+..||+|......+. ...... .......|++-+.+| +||+|+.+|.||+||--..     .....+.+
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~-~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~-----~AKT~lp~  616 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVD-SQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK-----RAKTALPG  616 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceee-cccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccch-----hhhhcCCC
Confidence            667778888999999974322221 111111 233456777766655 6999999999999995332     33445666


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      -..+|..|+.+.||++|++.+ +..+.|++..
T Consensus       617 lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            678999999999999987655 5677788763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02713 hypothetical protein; Provisional

Probab=97.25  E-value=0.012  Score=54.55  Aligned_cols=96  Identities=8%  Similarity=0.154  Sum_probs=55.1

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEccc-CcccCccccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVG-VDIDNWQPQKVPSG  220 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~-~~~~~~~~~~~~~~  220 (351)
                      ..+..||+++  ..|...-.+   ....... +++ .-+++..+.|+.+      ..+..||.++ .+   |..+..+..
T Consensus       432 ~~ve~YDP~t--d~W~~v~~m---~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---W~~~~~m~~  501 (557)
T PHA02713        432 NKVIRYDTVN--NIWETLPNF---WTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---WELITTTES  501 (557)
T ss_pred             ceEEEECCCC--CeEeecCCC---CcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---eeEccccCc
Confidence            3578889888  655433221   1111111 122 2356666777654      2467888887 43   555555554


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCcc
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNV  255 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~  255 (351)
                      .......+.+  ++++.++|+.|+  .+..||..+.+
T Consensus       502 ~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        502 RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            4333333333  678889999888  77888887664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.23  E-value=0.12  Score=45.06  Aligned_cols=256  Identities=9%  Similarity=0.051  Sum_probs=125.3

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-----
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY-----   79 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----   79 (351)
                      .+.+.|||+++ ++...+..   ....+....|+        |+|+.+|-.. ++.|.+++..++...+....+.     
T Consensus        22 ~~~y~i~d~~~-~~~~~l~~---~~~~~~~~~~s--------P~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~n   88 (353)
T PF00930_consen   22 KGDYYIYDIET-GEITPLTP---PPPKLQDAKWS--------PDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYN   88 (353)
T ss_dssp             EEEEEEEETTT-TEEEESS----EETTBSEEEE---------SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEE
T ss_pred             ceeEEEEecCC-CceEECcC---Cccccccceee--------cCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEc
Confidence            46788999998 64443332   26788999999        8899988776 6789999887664443333221     


Q ss_pred             -----------ccceeeeEeeecCCeEEecCCc-eeE---EEEEeccccc--cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           80 -----------RKEVISLASYIEGPVLVAGSSS-YQV---SVESLLIGHE--DWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        80 -----------~~~~~~~~~~~~~~~l~~~~~~-~~~---~~~~~~~~h~--~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                                 -.....+.|+|+++.|+....+ ..+   .+......+.  -.+..+.+-      .-|.-      - 
T Consensus        89 G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP------k~G~~------n-  155 (353)
T PF00930_consen   89 GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP------KAGDP------N-  155 (353)
T ss_dssp             SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--------BTTS---------
T ss_pred             CccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC------CCCCc------C-
Confidence                       1224577899999988874322 222   2222222111  134444442      22222      1 


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCcccccc
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~  217 (351)
                         ..-.+.|+|+.+  ++....-...........+..+.|.++++.++..-.+     ..+.++|..++..   +.+. 
T Consensus       156 ---p~v~l~v~~~~~--~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~---~~~~-  226 (353)
T PF00930_consen  156 ---PRVSLFVVDLAS--GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET---RVVL-  226 (353)
T ss_dssp             ----EEEEEEEESSS--TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC---EEEE-
T ss_pred             ---CceEEEEEECCC--CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce---eEEE-
Confidence               111366788877  4332111111112335568899999999844443322     2466666665432   1111 


Q ss_pred             cccccccE---EEEEee-cCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEE
Q 048511          218 PSGHFAAV---MDISWS-RSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRF  291 (351)
Q Consensus       218 ~~~~~~~v---~~v~~s-p~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l  291 (351)
                      .......|   ....|. +++. +|.....||.-+||-+.....         ....+....-.|+. +.+++ .++.++
T Consensus       227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~---------~~~~lT~G~~~V~~i~~~d~-~~~~iy  296 (353)
T PF00930_consen  227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG---------KPRQLTSGDWEVTSILGWDE-DNNRIY  296 (353)
T ss_dssp             EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS---------EEEESS-SSS-EEEEEEEEC-TSSEEE
T ss_pred             EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc---------ceeccccCceeecccceEcC-CCCEEE
Confidence            11122222   244554 5554 444555677655554433221         11122223334644 55666 234444


Q ss_pred             EEecCC--CeEEEEec
Q 048511          292 VSGADE--KVARVFEA  305 (351)
Q Consensus       292 ~s~~~d--g~v~vw~~  305 (351)
                      .++..+  +.-.||.+
T Consensus       297 f~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  297 FTANGDNPGERHLYRV  312 (353)
T ss_dssp             EEESSGGTTSBEEEEE
T ss_pred             EEecCCCCCceEEEEE
Confidence            555543  34455543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.12  E-value=0.19  Score=46.85  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=44.4

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEE---EcccCcccCcccccccc-cccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLW---RNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~---d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      ...|..+.|+|||..++... ++.|++=   ....+... ......+. .-...+.++.|.+++.++ ++..++...+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~-l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA-LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee-ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            34699999999999887765 5777773   32333211 11111122 223346789999998855 555555555565


Q ss_pred             CC
Q 048511          251 PW  252 (351)
Q Consensus       251 ~~  252 (351)
                      +.
T Consensus       524 v~  525 (591)
T PRK13616        524 VN  525 (591)
T ss_pred             Ee
Confidence            43

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.03  E-value=0.091  Score=48.82  Aligned_cols=223  Identities=11%  Similarity=0.118  Sum_probs=118.8

Q ss_pred             CccEEEEeeCCC------cEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc-eeE--EEEEeccccccc-e
Q 048511           48 ISILLVSSSQDK------VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS-YQV--SVESLLIGHEDW-V  117 (351)
Q Consensus        48 ~~~~l~t~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~h~~~-v  117 (351)
                      .+.+++.||.++      .+..+|..+........... .....-+...++.+.++|+.+ +..  .....+..+.+. .
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            466777888774      57788887775433222221 122333344566788888877 322  222222222221 0


Q ss_pred             ---------EEEEecCCCCCCCCCcccCCCceeEEeecCCe-----EEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          118 ---------YSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-----MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       118 ---------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                               ..+....     -+|.+      .|+|+.||.     |-.||.++  .+|...-.+   .......-  ..
T Consensus       363 ~~a~M~~~R~~~~v~~-----l~g~i------YavGG~dg~~~l~svE~YDp~~--~~W~~va~m---~~~r~~~g--v~  424 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAV-----LDGKL------YAVGGFDGEKSLNSVECYDPVT--NKWTPVAPM---LTRRSGHG--VA  424 (571)
T ss_pred             ccCCccCccccceeEE-----ECCEE------EEEeccccccccccEEEecCCC--CcccccCCC---CcceeeeE--EE
Confidence                     0011110     34556      788888854     77788777  443322211   01111111  12


Q ss_pred             cCCCCEEEEEeeC------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC-----cEEEEcCC
Q 048511          184 SPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPW  252 (351)
Q Consensus       184 ~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~  252 (351)
                      .-+|...++|+.+      .++..||..++.   |..+..+..-..... ++. -++.+.+.|+.|+     +|..||..
T Consensus       425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~---W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNT---WTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             EECCEEEEEcCcCCCccccceEEEEcCCCCc---eeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCC
Confidence            2367777888755      357788887765   444444443332222 322 2567778888776     37778887


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe-----EEEEecC
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV-----ARVFEAP  306 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~-----v~vw~~~  306 (351)
                      +.        .|..+.........+....+    ++.+.+.|+.||.     |..||..
T Consensus       500 ~~--------~W~~v~~m~~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  500 TN--------QWTMVAPMTSPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CC--------ceeEcccCccccccccEEEE----CCEEEEEecccCccccceeEEcCCC
Confidence            66        47777655444433333333    5788899987764     5555544

>PHA03098 kelch-like protein; Provisional

Probab=97.00  E-value=0.078  Score=49.20  Aligned_cols=106  Identities=13%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--------CeEEEEEcccCcccCcccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--------GAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      ..+..||+.+  ..+...-.   .+...... +++ ..++..++.|+.+        ..+.+||..+.+   |..+..+.
T Consensus       406 ~~v~~yd~~t--~~W~~~~~---~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~  475 (534)
T PHA03098        406 KTVECFSLNT--NKWSKGSP---LPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK---WTELSSLN  475 (534)
T ss_pred             ceEEEEeCCC--CeeeecCC---CCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc---eeeCCCCC
Confidence            4578888887  55543221   11111111 122 2355666666543        238888887754   33333222


Q ss_pred             cccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEecccccc
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      ........+.  -++++++.|+.+     ..+.+||..+.        .|..+..+...
T Consensus       476 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~  524 (534)
T PHA03098        476 FPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN--------TWTLFCKFPKV  524 (534)
T ss_pred             cccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC--------EEEecCCCccc
Confidence            1111112222  266777777654     46888887655        47766654433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.00  E-value=0.0036  Score=48.95  Aligned_cols=141  Identities=10%  Similarity=0.038  Sum_probs=79.9

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      +..-+.|+.|+-++++...-.+..  .    ..+...   ...-.-+..+++|+.+|.|.+|....-.    ........
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rs--e----~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g----~~~d~~~s   99 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRS--E----RFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG----AHSDRVCS   99 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhh--h----hhhhcc---eeecccCceEEeecccceEEEecCCccc----hHHHhhhc
Confidence            556678888888888762111110  0    011111   1112235679999999999999876321    11111111


Q ss_pred             ccccE-EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc-cceeEEEEeeeCCCcEEEEe--cC
Q 048511          221 HFAAV-MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG-HDINCVTIIQGKGNHRFVSG--AD  296 (351)
Q Consensus       221 ~~~~v-~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~--~~  296 (351)
                      -...| ..|.--.++.+..+++.||.||.|++.-.+          .+.....|+ .++.....+.  .++.++..  |.
T Consensus       100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----------~~g~~g~h~~~~~e~~ivv~--sd~~i~~a~~S~  167 (238)
T KOG2444|consen  100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK----------VLGYVGQHNFESGEELIVVG--SDEFLKIADTSH  167 (238)
T ss_pred             ccccceeccccccccceeEEeccCCceeeeccccCc----------eeeeeccccCCCcceeEEec--CCceEEeecccc
Confidence            12222 222223355678899999999999997665          333333454 4455555554  46666666  77


Q ss_pred             CCeEEEEecC
Q 048511          297 EKVARVFEAP  306 (351)
Q Consensus       297 dg~v~vw~~~  306 (351)
                      |..++.|++.
T Consensus       168 d~~~k~W~ve  177 (238)
T KOG2444|consen  168 DRVLKKWNVE  177 (238)
T ss_pred             chhhhhcchh
Confidence            7777777764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.99  E-value=0.18  Score=42.56  Aligned_cols=158  Identities=13%  Similarity=0.234  Sum_probs=84.0

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      -...+..+..+      +++.+      +++++......-||.-.  ..+....+     .....|..+.|.|++...++
T Consensus       143 ~~gs~~~~~r~------~dG~~------vavs~~G~~~~s~~~G~--~~w~~~~r-----~~~~riq~~gf~~~~~lw~~  203 (302)
T PF14870_consen  143 TSGSINDITRS------SDGRY------VAVSSRGNFYSSWDPGQ--TTWQPHNR-----NSSRRIQSMGFSPDGNLWML  203 (302)
T ss_dssp             ----EEEEEE-------TTS-E------EEEETTSSEEEEE-TT---SS-EEEE-------SSS-EEEEEE-TTS-EEEE
T ss_pred             CcceeEeEEEC------CCCcE------EEEECcccEEEEecCCC--ccceEEcc-----CccceehhceecCCCCEEEE
Confidence            34567888888      78988      88887777777888654  33333322     34567999999999876564


Q ss_pred             EeeCCeEEEEEcccCcccCcc-cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQ-PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      + ..|.|++=+..... ..+. ....+....-.+..++|.+++...++|+ .|.+ +.....++       +|+......
T Consensus       204 ~-~Gg~~~~s~~~~~~-~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk-------tW~~~~~~~  272 (302)
T PF14870_consen  204 A-RGGQIQFSDDPDDG-ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK-------TWQKDRVGE  272 (302)
T ss_dssp             E-TTTEEEEEE-TTEE-EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS-------S-EE-GGGT
T ss_pred             e-CCcEEEEccCCCCc-cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc-------cceECcccc
Confidence            4 88888887721111 0011 1222222334589999999988777665 4544 33445554       788776554


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      .-...++.+.|.+  +.+-+ +-+.+|.|.-|
T Consensus       273 ~~~~n~~~i~f~~--~~~gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVN--PDKGF-VLGQDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEE--TTEEE-EE-STTEEEEE
T ss_pred             CCCCceEEEEEcC--CCceE-EECCCcEEEEe
Confidence            4455689999987  44444 44577777554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.027  Score=49.65  Aligned_cols=140  Identities=9%  Similarity=0.047  Sum_probs=90.3

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-------EEEEEeeCCeEEEEEcccCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-------SILAHGYGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~~  213 (351)
                      |.++..-..++-.|++.  |+.+....+.     . .|.-+.+.|+.+       .-+.|-.+..|.-||.+-....   
T Consensus       349 l~~~~~~~~l~klDIE~--GKIVeEWk~~-----~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---  417 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIER--GKIVEEWKFE-----D-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---  417 (644)
T ss_pred             eeCCCCcCcceeeeccc--ceeeeEeecc-----C-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence            55566666788888888  8888777632     2 266666777543       2245667888999999754321   


Q ss_pred             cccccccc----cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          214 PQKVPSGH----FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       214 ~~~~~~~~----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                      .+...++|    .....|.+-..+| ++++||.+|.||+||.-...          ....+.+-+.+|..+..+.  +|.
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~----------AKTAlPgLG~~I~hVdvta--dGK  484 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRR----------AKTALPGLGDAIKHVDVTA--DGK  484 (644)
T ss_pred             eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhh----------hhhcccccCCceeeEEeec--cCc
Confidence            11122222    1234445544454 78999999999999973332          3334557788899999998  888


Q ss_pred             EEEEecCCCeEEEEec
Q 048511          290 RFVSGADEKVARVFEA  305 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~  305 (351)
                      +|++.+.. .+.+-++
T Consensus       485 wil~Tc~t-yLlLi~t  499 (644)
T KOG2395|consen  485 WILATCKT-YLLLIDT  499 (644)
T ss_pred             EEEEeccc-EEEEEEE
Confidence            88766554 5555554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.005  Score=58.51  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=73.8

Q ss_pred             CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      .+..++.|+..|.+...|+.++-    .+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+...+          
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----------  163 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----------  163 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----------
Confidence            45678889999999999987751    2233333346789999999999999999999999999998876          


Q ss_pred             EeccccccccceeE---EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          266 EVARPQVHGHDINC---VTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       266 ~~~~~~~~~~~i~~---~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .+..+..|+.+.+.   +.+..  ++..++++...|.  +|.+.
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~--~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTS--QNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeC--CCcEEEEccCCCc--eEEEE
Confidence            33333444444333   33444  4667888888887  67643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.91  E-value=0.23  Score=43.43  Aligned_cols=109  Identities=11%  Similarity=0.150  Sum_probs=54.0

Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE--cCCCCEEEEE-eeCCeEEEEEc-ccCccc-------
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW--SPDGRSILAH-GYGGAFHLWRN-VGVDID-------  210 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~-~~dg~i~~~d~-~~~~~~-------  210 (351)
                      ..+....++++||+.+  .+.++++.+..   .......+.|  .|+..+-+++ ....+|..|-- ..++-.       
T Consensus       216 ~~~~yG~~l~vWD~~~--r~~~Q~idLg~---~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~i  290 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWST--RKLLQTIDLGE---EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDI  290 (461)
T ss_dssp             HHH-S--EEEEEETTT--TEEEEEEES-T---TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE
T ss_pred             hcccccCeEEEEECCC--CcEeeEEecCC---CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEEC
Confidence            3334467899999999  88888887543   1223445665  4445544333 34445554433 222100       


Q ss_pred             ------Cc---ccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCcc
Q 048511          211 ------NW---QPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNV  255 (351)
Q Consensus       211 ------~~---~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~  255 (351)
                            .+   ..++.+..-..-|+.|..|.|.++|...+. +|.|+.||+....
T Consensus       291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                  00   011122222456899999999999876664 8999999998765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.83  E-value=0.2  Score=45.21  Aligned_cols=128  Identities=14%  Similarity=0.207  Sum_probs=78.1

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC---CcceEEEEEeccccccccc--eEEEEEcCCC
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT---TGIWMNVVTVGELSHSALG--FYGGHWSPDG  187 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~  187 (351)
                      .-.-|..+.|.|...  .+.--      |++......|.+|.+...   ..+++.... .++ ....+  -....|+|..
T Consensus        55 qFEhV~GlsW~P~~~--~~~pa------LLAVQHkkhVtVWqL~~s~~e~~K~l~sQt-cEi-~e~~pvLpQGCVWHPk~  124 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCT--ADTPA------LLAVQHKKHVTVWQLCPSTTERNKLLMSQT-CEI-REPFPVLPQGCVWHPKK  124 (671)
T ss_pred             ccceeeeeeecCccc--CCCCc------eEEEeccceEEEEEeccCccccccceeeee-eec-cCCcccCCCcccccCCC
Confidence            334589999997542  22222      555667788999998731   122222211 111 11111  2357899999


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKN  254 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~  254 (351)
                      ..|++-.....-.+++++....   .....+ ...+.|.+.+|.+||+.|+.+- ..=.-++||-...
T Consensus       125 ~iL~VLT~~dvSV~~sV~~d~s---rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  125 AILTVLTARDVSVLPSVHCDSS---RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ceEEEEecCceeEeeeeeeCCc---eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            9888877776667777765431   222333 3567899999999999876653 3335688986544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.79  E-value=0.12  Score=46.34  Aligned_cols=144  Identities=13%  Similarity=0.004  Sum_probs=78.0

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ..-....+.++      |++++      ++. ..||.-.|+....  .....          .+.-..++|.++++ +|+
T Consensus        31 ~~~~p~~ls~n------pngr~------v~V-~g~geY~iyt~~~--~r~k~----------~G~g~~~vw~~~n~-yAv   84 (443)
T PF04053_consen   31 CEIYPQSLSHN------PNGRF------VLV-CGDGEYEIYTALA--WRNKA----------FGSGLSFVWSSRNR-YAV   84 (443)
T ss_dssp             -SS--SEEEE-------TTSSE------EEE-EETTEEEEEETTT--TEEEE----------EEE-SEEEE-TSSE-EEE
T ss_pred             CCcCCeeEEEC------CCCCE------EEE-EcCCEEEEEEccC--Ccccc----------cCceeEEEEecCcc-EEE
Confidence            34457789999      67887      666 5677777877433  11111          12345688988544 666


Q ss_pred             EeeCCeEEEE-EcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          193 HGYGGAFHLW-RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       193 ~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      -...+.|.++ ++...      ....+... ..+..+-.   |.+|...+.+ .|.+||+.+++          .+.+..
T Consensus        85 ~~~~~~I~I~kn~~~~------~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~----------~i~~i~  143 (443)
T PF04053_consen   85 LESSSTIKIYKNFKNE------VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK----------LIRRID  143 (443)
T ss_dssp             E-TTS-EEEEETTEE-------TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT------------EEEEES
T ss_pred             EECCCeEEEEEcCccc------cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc----------eeeEEe
Confidence            6668889996 33332      22233221 23444433   7877776644 89999998887          555544


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      ..  +|..+.|++  ++.+++-.+.+ .+.|++.+..
T Consensus       144 v~--~vk~V~Ws~--~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  144 VS--AVKYVIWSD--DGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             S---E-EEEEE-T--TSSEEEEE-S--SEEEEEE-HH
T ss_pred             cC--CCcEEEEEC--CCCEEEEEeCC-eEEEEEecch
Confidence            33  389999999  89999888766 6678776644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.78  E-value=0.0039  Score=36.00  Aligned_cols=34  Identities=9%  Similarity=0.177  Sum_probs=29.8

Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      ...|.+++|+|  ...+||.+..||.|.++.++++.
T Consensus        11 ~~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP--TMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECC--CCCEEEEEECCCeEEEEECCCcC
Confidence            34599999999  89999999999999999987544

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.74  E-value=0.15  Score=46.85  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc----------ceEEEEEeccccccccceEEEEEcC
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG----------IWMNVVTVGELSHSALGFYGGHWSP  185 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~~~  185 (351)
                      ....+.++      |||++     +++++..+.+|.|.|+...+.          .......      -...-...+|++
T Consensus       322 sPHGV~vS------PDGky-----lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve------vGlGPLHTaFDg  384 (635)
T PRK02888        322 NPHGVNTS------PDGKY-----FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE------LGLGPLHTAFDG  384 (635)
T ss_pred             CccceEEC------CCCCE-----EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec------cCCCcceEEECC
Confidence            45678888      78887     244455599999999987321          0122222      123345778999


Q ss_pred             CCCEEEEEeeCCeEEEEEccc
Q 048511          186 DGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~  206 (351)
                      +|+...+-..|..|..||+..
T Consensus       385 ~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCEEEeEeecceeEEEehHH
Confidence            999888888999999999976

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.71  E-value=0.29  Score=40.99  Aligned_cols=239  Identities=13%  Similarity=0.059  Sum_probs=120.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.+| |.+++.....+...+  .  +...|..|...        ++-+.|+.-+ |+.+.++++.............. 
T Consensus        13 Gt~~G-l~~~~~~~~~~~~~i--~--~~~~I~ql~vl--------~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~-   77 (275)
T PF00780_consen   13 GTEDG-LYVYDLSDPSKPTRI--L--KLSSITQLSVL--------PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF-   77 (275)
T ss_pred             EECCC-EEEEEecCCccceeE--e--ecceEEEEEEe--------cccCEEEEEc-CCccEEEEchhhccccccccccc-
Confidence            66777 899998331322222  2  23349999998        6566666665 59999999976544321110000 


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-  160 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  160 (351)
                              +.+.            ...........+...+....    ..+..      .+.....+.|.+|....... 
T Consensus        78 --------~~~~------------~~~~~~~~~~~v~~f~~~~~----~~~~~------~L~va~kk~i~i~~~~~~~~~  127 (275)
T PF00780_consen   78 --------PKSR------------SLPTKLPETKGVSFFAVNGG----HEGSR------RLCVAVKKKILIYEWNDPRNS  127 (275)
T ss_pred             --------cccc------------cccccccccCCeeEEeeccc----cccce------EEEEEECCEEEEEEEECCccc
Confidence                    0000            00000112223444431100    23333      44444556899999876311 


Q ss_pred             --ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----------ccccEEEE
Q 048511          161 --IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----------HFAAVMDI  228 (351)
Q Consensus       161 --~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----------~~~~v~~v  228 (351)
                        ...+.+.      -...+.+++|.  ++.++.+..++ ..+.|+.++...   .+.....          ...++..+
T Consensus       128 f~~~~ke~~------lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~  195 (275)
T PF00780_consen  128 FSKLLKEIS------LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS---ELLDPSDSSSSFKSRNSSSKPLGIF  195 (275)
T ss_pred             ccceeEEEE------cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce---EEeCccCCcchhhhcccCCCceEEE
Confidence              2334443      23568888987  55677666544 788899865431   1111111          11233333


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-c
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-L  307 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~  307 (351)
                      .. +++.+|++-  |..-.+.|......     +    -..+.- ...+..+++..    .+|++.+.+ .|.||++. +
T Consensus       196 ~~-~~~e~Ll~~--~~~g~fv~~~G~~~-----r----~~~i~W-~~~p~~~~~~~----pyli~~~~~-~iEV~~~~~~  257 (275)
T PF00780_consen  196 QL-SDNEFLLCY--DNIGVFVNKNGEPS-----R----KSTIQW-SSAPQSVAYSS----PYLIAFSSN-SIEVRSLETG  257 (275)
T ss_pred             Ee-CCceEEEEe--cceEEEEcCCCCcC-----c----ccEEEc-CCchhEEEEEC----CEEEEECCC-EEEEEECcCC
Confidence            33 345666643  33333444432220     0    011111 12356777754    466666554 59999987 7


Q ss_pred             hhhhceee
Q 048511          308 SFLKTLNH  315 (351)
Q Consensus       308 ~~~~~~~~  315 (351)
                      +.++++..
T Consensus       258 ~lvQ~i~~  265 (275)
T PF00780_consen  258 ELVQTIPL  265 (275)
T ss_pred             cEEEEEEC
Confidence            77776653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.67  E-value=0.4  Score=42.03  Aligned_cols=183  Identities=14%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--------------------eCCeEEEEEcccC
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--------------------YGGAFHLWRNVGV  207 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--------------------~dg~i~~~d~~~~  207 (351)
                      |-+.+.|-++  -.........  ......-+.+-|.|..+.++++.                    ...++.+||+.+.
T Consensus       157 Ggf~llD~~t--f~v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  157 GGFVLLDGET--FEVKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             -EEEEE-TTT----EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             CcEEEEcCcc--ccccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence            3466666654  3333322211  12233456778888888887753                    3578999999987


Q ss_pred             cccCccccccccccc--ccEEEEEeec--CCCE-EEEEeCCCcEEEEcC-CCccccccCccceEE--eccc---------
Q 048511          208 DIDNWQPQKVPSGHF--AAVMDISWSR--SSDY-LLSVSHDQTTRVFAP-WKNVASLMGENSWHE--VARP---------  270 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~--~~v~~v~~sp--~~~~-l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~--~~~~---------  270 (351)
                           ++++++.--.  ..+..|.|..  +..+ ++.+.-..+|..|-- ..+        .|..  +...         
T Consensus       233 -----~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g--------~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  233 -----KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG--------EWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             -----EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT--------EEEEEEEEEE--EE--SS-
T ss_pred             -----cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC--------CeeeeEEEECCCcccCccc
Confidence                 4455554332  2355666654  4444 444444555555543 222        2221  1110         


Q ss_pred             --------cccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecCchhhhceee--ccccccchhhh---hHHhHHhhcc
Q 048511          271 --------QVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAPLSFLKTLNH--ATFQESSFHED---LQADVQILGA  336 (351)
Q Consensus       271 --------~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~  336 (351)
                              ..-..-|+.+.++.  |.++| ++.-.+|.||.||++...--.+.+  ..+-...+.+.   ....+.. |.
T Consensus       300 lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G-gP  376 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG-GP  376 (461)
T ss_dssp             --GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred             ccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC-CC
Confidence                    00122378999988  66655 566689999999987322222222  22222211111   0123455 78


Q ss_pred             eeeeccCCCCCeee
Q 048511          337 NMSALGLSQKPIYV  350 (351)
Q Consensus       337 ~~~~~~~~~~~~~~  350 (351)
                      .|-+|.|..|.+|.
T Consensus       377 qMvqlS~DGkRlYv  390 (461)
T PF05694_consen  377 QMVQLSLDGKRLYV  390 (461)
T ss_dssp             --EEE-TTSSEEEE
T ss_pred             CeEEEccCCeEEEE
Confidence            89999999999996

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.64  E-value=0.13  Score=48.00  Aligned_cols=154  Identities=11%  Similarity=0.063  Sum_probs=82.9

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEee------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSAS------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      ..+...+++      ++++.      ++...      .|..-.||=.... +.. ..+.    .+.  ....-.|+|+|.
T Consensus       350 ~~vsspaiS------pdG~~------vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt----~g~--~~t~PsWspDG~  409 (591)
T PRK13616        350 GNITSAALS------RSGRQ------VAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL----EGH--SLTRPSWSLDAD  409 (591)
T ss_pred             cCcccceEC------CCCCE------EEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee----cCC--CCCCceECCCCC
Confidence            356788888      67776      66554      2443344433321 222 2222    111  367789999988


Q ss_pred             EEEEEeeC------------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE---EcCCC
Q 048511          189 SILAHGYG------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV---FAPWK  253 (351)
Q Consensus       189 ~l~~~~~d------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v---wd~~~  253 (351)
                      .+++....            +.+.+.+++.+.     ...   ...+.|..+.|||||..++... ++.|++   -....
T Consensus       410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge-----~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~  480 (591)
T PRK13616        410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASA-----VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED  480 (591)
T ss_pred             ceEEEecCcceEEEeccCCCceEEEEeccCch-----hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence            77766432            233333444332     111   2345799999999999887765 577777   33233


Q ss_pred             ccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          254 NVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +..      .......+ ..-...+..+.|..  ++.++ .+..++...+|.++
T Consensus       481 G~~------~l~~~~~l~~~l~~~~~~l~W~~--~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        481 GQY------ALTNPREVGPGLGDTAVSLDWRT--GDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             Cce------eecccEEeecccCCccccceEec--CCEEE-EEecCCCCceEEEe
Confidence            320      11111111 11223357899998  67654 55555545556543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.49  Score=41.79  Aligned_cols=159  Identities=11%  Similarity=0.090  Sum_probs=98.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeec---CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ....+++.      ++++.      +..+..   ++++.+.|..+  ...........     .+ ..++++|+++.+++
T Consensus       117 ~P~~~~~~------~~~~~------vYV~n~~~~~~~vsvid~~t--~~~~~~~~vG~-----~P-~~~a~~p~g~~vyv  176 (381)
T COG3391         117 GPVGLAVD------PDGKY------VYVANAGNGNNTVSVIDAAT--NKVTATIPVGN-----TP-TGVAVDPDGNKVYV  176 (381)
T ss_pred             CCceEEEC------CCCCE------EEEEecccCCceEEEEeCCC--CeEEEEEecCC-----Cc-ceEEECCCCCeEEE
Confidence            45577888      56655      444443   68888888887  66666654322     23 78999999997776


Q ss_pred             Ee-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEec
Q 048511          193 HG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       193 ~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                      .. .++.|.++|..+..... ........-......+.++|++.++......   +.+...|..++...      . . .
T Consensus       177 ~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~------~-~-~  247 (381)
T COG3391         177 TNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT------A-T-D  247 (381)
T ss_pred             EecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE------E-e-c
Confidence            66 67999999977653211 0000011222344678999999976555443   58888888777521      0 1 0


Q ss_pred             cccccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                      ...... ....+..+|  ++..+.+.. ..+.+.+-|..
T Consensus       248 ~~~~~~-~~~~v~~~p--~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         248 LPVGSG-APRGVAVDP--AGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             cccccC-CCCceeECC--CCCEEEEEecCCCeEEEEeCC
Confidence            111111 345677888  777776663 45778888765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.48  E-value=0.23  Score=46.10  Aligned_cols=106  Identities=22%  Similarity=0.426  Sum_probs=68.8

Q ss_pred             eEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc--CCCCEEEEEeeCCeEEEEEcc----cCcccCcc
Q 048511          141 ILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS--PDGRSILAHGYGGAFHLWRNV----GVDIDNWQ  213 (351)
Q Consensus       141 l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~  213 (351)
                      ++... ....+.|||.+.  +.......+    .....|..+.|.  |+++.+++.+..+.|.+|--.    +.....|.
T Consensus        43 ~a~V~~~~~~LtIWD~~~--~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~  116 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRS--GVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA  116 (631)
T ss_pred             EEEEECCCCEEEEEEcCC--cEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence            33333 345699999998  443322221    345679999985  688999999999999999652    22223344


Q ss_pred             ccccc--cccc-ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          214 PQKVP--SGHF-AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       214 ~~~~~--~~~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      +++.+  ..++ .+|.+..|.++|.+++.+  ++.+.|+|-.-.
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~~  158 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWLD  158 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCcC
Confidence            44433  2233 578999999999765544  457888875443

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.47  E-value=0.38  Score=39.37  Aligned_cols=198  Identities=12%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             EEEEeeeecC--CceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511           20 VRACELKGHT--DWIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        20 ~~~~~~~~h~--~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      ..+.++. |.  .-...+.|.        .++.++-+.|.-|  .|+.+|+.+++.......+..             ++
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~--------~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-------------~F   91 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFL--------DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-------------YF   91 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEE--------ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------------
T ss_pred             EEEEECC-CCCcccCccEEec--------CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-------------cc
Confidence            3344444 33  346778886        5677888887766  688999998875543332110             00


Q ss_pred             EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511           96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus        96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                                 -.-+..+.+.+..+.|-                       ++...+||..+  -+.+.++..      .
T Consensus        92 -----------gEGit~~~d~l~qLTWk-----------------------~~~~f~yd~~t--l~~~~~~~y------~  129 (264)
T PF05096_consen   92 -----------GEGITILGDKLYQLTWK-----------------------EGTGFVYDPNT--LKKIGTFPY------P  129 (264)
T ss_dssp             -----------EEEEEEETTEEEEEESS-----------------------SSEEEEEETTT--TEEEEEEE-------S
T ss_pred             -----------ceeEEEECCEEEEEEec-----------------------CCeEEEEcccc--ceEEEEEec------C
Confidence                       00011123445555544                       67788999988  666666652      1


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----cccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----FAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      ..=+.++  .+++.|+.+.....|+++|..+-+     ...++.-.     -..++.+.|. +|.+.|=.=....|..-|
T Consensus       130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-----~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-----EVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-----EEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             CcceEEE--cCCCEEEEECCccceEEECCcccc-----eEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            2345666  467788888888899999987642     22222211     1245666765 454444443455666678


Q ss_pred             CCCccccccCccceEEeccccc----------cccceeEEEEeeeCCCcEEEEec
Q 048511          251 PWKNVASLMGENSWHEVARPQV----------HGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      ..++..     ..+-.+..+..          ...-.+.+|+.| ..+.+++||-
T Consensus       202 p~tG~V-----~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~-~~~~l~vTGK  250 (264)
T PF05096_consen  202 PETGKV-----VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP-ETDRLFVTGK  250 (264)
T ss_dssp             TTT-BE-----EEEEE-HHHHHHHTSTTST--TTS-EEEEEEET-TTTEEEEEET
T ss_pred             CCCCeE-----EEEEEhhHhhhcccccccccccCCeeEeEeEeC-CCCEEEEEeC
Confidence            777762     22222221111          123489999998 4567778873

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.46  E-value=0.51  Score=42.11  Aligned_cols=112  Identities=18%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             EEEecCCCCCCCCCcccCCCceeEEeecCCe--EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-e
Q 048511          119 SVQWEPPSTAPSDGVSCQQPSSILSASMDKT--MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-Y  195 (351)
Q Consensus       119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~  195 (351)
                      ..+|+      |||+.     ++++...|+.  |.+.|+..  +... .+.     .....-..-.|+|+|++++-.+ .
T Consensus       242 ~P~fs------pDG~~-----l~f~~~rdg~~~iy~~dl~~--~~~~-~Lt-----~~~gi~~~Ps~spdG~~ivf~Sdr  302 (425)
T COG0823         242 APAFS------PDGSK-----LAFSSSRDGSPDIYLMDLDG--KNLP-RLT-----NGFGINTSPSWSPDGSKIVFTSDR  302 (425)
T ss_pred             CccCC------CCCCE-----EEEEECCCCCccEEEEcCCC--Ccce-ecc-----cCCccccCccCCCCCCEEEEEeCC
Confidence            45788      67766     2445555665  55556665  3321 111     1122222568999999776554 4


Q ss_pred             CCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCcc
Q 048511          196 GGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNV  255 (351)
Q Consensus       196 dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~  255 (351)
                      .|.  |.+++++.+.      ...+....+.-..-.|+|||++|+..+. +|.  |.+.|+.++.
T Consensus       303 ~G~p~I~~~~~~g~~------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         303 GGRPQIYLYDLEGSQ------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCcceEEECCCCCc------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            454  5555666543      1222222222225679999999887664 344  6666665554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.44  E-value=0.47  Score=40.08  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      .....+..+.-+++|++++++.......-||.-...   +++....  ....|.+|.|.|++.+.+.+ ..|.|+.=+..
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence            344678888889999999988777777777654321   2222222  35689999999998876654 78888887722


Q ss_pred             CccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          253 KNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      ...      ..|..... .......+..++|.+  ++...|+|+....
T Consensus       216 ~~~------~~w~~~~~~~~~~~~~~ld~a~~~--~~~~wa~gg~G~l  255 (302)
T PF14870_consen  216 DDG------ETWSEPIIPIKTNGYGILDLAYRP--PNEIWAVGGSGTL  255 (302)
T ss_dssp             TEE------EEE---B-TTSS--S-EEEEEESS--SS-EEEEESTT-E
T ss_pred             CCc------cccccccCCcccCceeeEEEEecC--CCCEEEEeCCccE
Confidence            221      24544222 223344588999998  6777776665533

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.43  E-value=0.011  Score=34.18  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=27.7

Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                      ...|..++|+|...+||.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            346899999999999999999999999998

>PHA03098 kelch-like protein; Provisional

Probab=96.40  E-value=0.5  Score=43.92  Aligned_cols=145  Identities=11%  Similarity=0.158  Sum_probs=73.2

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDI  209 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~  209 (351)
                      ++.|+.+     ..+..||+.+  ..+...-.+   ....... +++ .-+++.++.|+.+      ..+..||+.+.+ 
T Consensus       346 yv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~l---p~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-  417 (534)
T PHA03098        346 YVIGGIYNSISLNTVESWKPGE--SKWREEPPL---IFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK-  417 (534)
T ss_pred             EEEeCCCCCEecceEEEEcCCC--CceeeCCCc---CcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-
Confidence            6666654     3467788776  555432211   1111111 112 2356666666632      458889987754 


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCC--------CcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                        |..+..+....... ++ ...++.+++.|+.+        ..+.+||..+.        .|..+.......... +++
T Consensus       418 --W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--------~W~~~~~~~~~r~~~-~~~  484 (534)
T PHA03098        418 --WSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--------KWTELSSLNFPRINA-SLC  484 (534)
T ss_pred             --eeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC--------ceeeCCCCCcccccc-eEE
Confidence              33333222111111 12 22355666666643        23888888765        466665433222111 222


Q ss_pred             EeeeCCCcEEEEecCC-----CeEEEEecCchh
Q 048511          282 IIQGKGNHRFVSGADE-----KVARVFEAPLSF  309 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~  309 (351)
                       ..  ++.+++.||.+     ..|.+||...+.
T Consensus       485 -~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        485 -IF--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             -EE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence             22  57788888764     467788876443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.29  E-value=0.88  Score=41.70  Aligned_cols=103  Identities=9%  Similarity=-0.024  Sum_probs=55.7

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE------------------eeCCeEEEE
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH------------------GYGGAFHLW  202 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~------------------~~dg~i~~~  202 (351)
                      ++.++.+|.+...|.++  ++.+-.....        ...++.+|  ..++.+                  ..+|.+.-+
T Consensus       304 V~~g~~~G~l~ald~~t--G~~~W~~~~~--------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al  371 (488)
T cd00216         304 IVHAPKNGFFYVLDRTT--GKLISARPEV--------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL  371 (488)
T ss_pred             EEEECCCceEEEEECCC--CcEeeEeEee--------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence            77788899999999999  5554443321        01122233  222221                  235677777


Q ss_pred             EcccCcccCcccccccccc---cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          203 RNVGVDIDNWQPQKVPSGH---FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~---~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |+.+++.............   ......-...-.+..|+.++.||.|+.+|..+++
T Consensus       372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence            8777653211111100000   0111100111245678888999999999999997

The alignment model contains an 8-bladed beta-propeller.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.28  E-value=0.0062  Score=56.91  Aligned_cols=124  Identities=14%  Similarity=0.099  Sum_probs=81.4

Q ss_pred             ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---C
Q 048511          110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---D  186 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~  186 (351)
                      +++..+.|-.++|-.     .+...      ++  -.-|.+.+||+..-+|+....+.+.........+.-+.|.|   +
T Consensus       128 ~kgf~G~v~dl~fah-----~~~pk------~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~  194 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAH-----TKCPK------GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVN  194 (1283)
T ss_pred             HhcCCCCcccccccc-----cCChH------HH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccc
Confidence            556677788888763     11111      22  33467889998876666655555444334444556666665   5


Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEE-----------EeecCCCEEEEEeCCCcEEEEcCC
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI-----------SWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v-----------~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ..++..+-.++.+++...+...      ...+.+|..++..+           ..+|||..|+.++.||.++.|.+.
T Consensus       195 ~~~ic~~~~~~~i~lL~~~ra~------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  195 KVYICYGLKGGEIRLLNINRAL------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cceeeeccCCCceeEeeechHH------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            5677777788999998887642      34455576655554           368999999999999998888764

>PHA02790 Kelch-like protein; Provisional

Probab=96.28  E-value=0.6  Score=42.69  Aligned_cols=140  Identities=11%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             eEEeecC--CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---eEEEEEcccCcccCcccc
Q 048511          141 ILSASMD--KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---AFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~  215 (351)
                      .+.|+.+  ..+..||...  ..+...-.   +.........+.  -+++..+.|+.++   .+..||.++..   |...
T Consensus       322 YviGG~~~~~sve~ydp~~--n~W~~~~~---l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~  391 (480)
T PHA02790        322 YVVGGLPNPTSVERWFHGD--AAWVNMPS---LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFG  391 (480)
T ss_pred             EEECCcCCCCceEEEECCC--CeEEECCC---CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeC
Confidence            6666653  3577788766  55543222   111111112222  3667777777553   46778887653   3333


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      ..+.........+  .-++++.+.|+   .+.+||..+.        .|..+..+....... +++..   ++.+.+.||
T Consensus       392 ~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~--------~W~~~~~m~~~r~~~-~~~v~---~~~IYviGG  454 (480)
T PHA02790        392 PSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSN--------TWTLIDDPIYPRDNP-ELIIV---DNKLLLIGG  454 (480)
T ss_pred             CCCCCccccceEE--EECCEEEEECC---ceEEecCCCC--------cEeEcCCCCCCcccc-EEEEE---CCEEEEECC
Confidence            3332222221222  33566666663   5778988654        587776553322222 33333   578888888


Q ss_pred             CC-----CeEEEEecCc
Q 048511          296 DE-----KVARVFEAPL  307 (351)
Q Consensus       296 ~d-----g~v~vw~~~~  307 (351)
                      .+     ..|.+||...
T Consensus       455 ~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        455 FYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cCCCcccceEEEEECCC
Confidence            64     3566777653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.28  E-value=0.77  Score=40.93  Aligned_cols=155  Identities=10%  Similarity=0.045  Sum_probs=79.7

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc----cccccceEEEEEcCCCCEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL----SHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~l  190 (351)
                      +.+.++.|.      .+. .      |+....||.+++||+..   ..  .+.+...    ......+....+..+|  +
T Consensus        81 ~~iv~~~wt------~~e-~------LvvV~~dG~v~vy~~~G---~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--i  140 (410)
T PF04841_consen   81 GRIVGMGWT------DDE-E------LVVVQSDGTVRVYDLFG---EF--QFSLGEEIEEEKVLECRIFAIWFYKNG--I  140 (410)
T ss_pred             CCEEEEEEC------CCC-e------EEEEEcCCEEEEEeCCC---ce--eechhhhccccCcccccccccccCCCC--E
Confidence            689999999      443 3      77778999999999873   22  2222111    1111122223333345  3


Q ss_pred             EEEeeCCeEEEEEcccCcccCccccccc-------ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVP-------SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~-------~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  263 (351)
                      +.-..++.+.+..-...... .......       ..+........++.+....+....++.+.+.+-....        
T Consensus       141 vvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------  211 (410)
T PF04841_consen  141 VVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------  211 (410)
T ss_pred             EEECCCCeEEEEeCccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------
Confidence            33334454444422221100 0000010       0111110112344455555555555666644322111        


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        .   . ...+++..++++|  +++++|.-..+|.+.|.+.+
T Consensus       212 --~---i-~~~~~i~~iavSp--ng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  212 --Q---I-DSDGPIIKIAVSP--NGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             --c---c-cCCCCeEEEEECC--CCCEEEEEECCCCEEEEECc
Confidence              1   1 1235699999999  89999999999999888765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.24  E-value=0.015  Score=45.59  Aligned_cols=103  Identities=12%  Similarity=0.019  Sum_probs=61.2

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE-EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG-GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      ++.|+.+|.|.+|..... +.....+.     .....|.+ +.--.++.+..+++.+|.|+.|++.-.+     .+-...
T Consensus        73 ~~vG~~dg~v~~~n~n~~-g~~~d~~~-----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-----~~g~~g  141 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLE-GAHSDRVC-----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-----VLGYVG  141 (238)
T ss_pred             EEeecccceEEEecCCcc-chHHHhhh-----cccccceeccccccccceeEEeccCCceeeeccccCc-----eeeeec
Confidence            999999999999998731 22111111     11112222 3333355688999999999999987653     233333


Q ss_pred             ccc-ccEEEEEeecCCCEEEEE--eCCCcEEEEcCCCc
Q 048511          220 GHF-AAVMDISWSRSSDYLLSV--SHDQTTRVFAPWKN  254 (351)
Q Consensus       220 ~~~-~~v~~v~~sp~~~~l~s~--~~dg~i~vwd~~~~  254 (351)
                      .|. ..+.....+..++.++.+  |.|..++.|++..-
T Consensus       142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            344 344444445555666666  66777777776543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.22  E-value=0.5  Score=38.19  Aligned_cols=64  Identities=19%  Similarity=0.077  Sum_probs=41.4

Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~  206 (351)
                      +++.+      +..|+.|++.+..|.++  ..++-..+     .......+-+..|....|+.+...|.+.--..+.
T Consensus       103 ~~~gl------Iycgshd~~~yalD~~~--~~cVyksk-----cgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  103 FDGGL------IYCGSHDGNFYALDPKT--YGCVYKSK-----CGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             CCCce------EEEecCCCcEEEecccc--cceEEecc-----cCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            56777      99999999999999998  55555443     2222233445666445566666667665554444

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.29  Score=43.58  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      -+.|-.|+.|.-||++-.....+...+-.++. ......|++-..+ .++++|+.+|.|++||--..     .....+.+
T Consensus       397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~-~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~-----~AKTAlPg  469 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS-TKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGR-----RAKTALPG  469 (644)
T ss_pred             cEEeecCCceEEecccccCcceeeeeeccccc-cccccceeeecCC-ceEEEeecCCcEEeehhhhh-----hhhhcccc
Confidence            35566788899999986322222222211111 1223445554433 47999999999999998332     33455677


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      -..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus       470 LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  470 LGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            788999999999999987554 5567676654

>PHA02790 Kelch-like protein; Provisional

Probab=96.10  E-value=0.47  Score=43.35  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=50.8

Q ss_pred             eEEeecCC---eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          141 ILSASMDK---TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       141 l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      .+.|+.++   .+..||.++  ..|...-.+   ....... +++ .-+++..+.|   |.+.+||.++++   |..+..
T Consensus       366 YviGG~~~~~~~ve~ydp~~--~~W~~~~~m---~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~---W~~~~~  432 (480)
T PHA02790        366 YVIGGHSETDTTTEYLLPNH--DQWQFGPST---YYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNT---WTLIDD  432 (480)
T ss_pred             EEecCcCCCCccEEEEeCCC--CEEEeCCCC---CCccccc-eEE-EECCEEEEEC---CceEEecCCCCc---EeEcCC
Confidence            66666543   466788877  555442221   1111111 121 2355555555   356788887654   444444


Q ss_pred             cccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCc
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKN  254 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~  254 (351)
                      +........ ++ .-++++.+.|+.+     ..+..||..+.
T Consensus       433 m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        433 PIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence            432222222 22 2356777777754     35667776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.01  E-value=0.53  Score=43.76  Aligned_cols=120  Identities=12%  Similarity=0.145  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee--cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS--RSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +.-+.-+.-++..++-.....+.|||.+.+..   .....+ ...+.|.++.|.  |+++.+++.+-...|.+|--....
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEE---EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            34444455555555555567899999988742   222233 346789999886  588888888899999988542111


Q ss_pred             ccccCccceEEeccc--cccc-cceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          256 ASLMGENSWHEVARP--QVHG-HDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~--~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ... ....|..+...  ..+. ++|.+..|.+  +|.++++.  +..+.|++-.
T Consensus       108 y~~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~--~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  108 YTN-KGPSWAPIRKIDISSHTPHPIGDSIWLK--DGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             hhc-CCcccceeEEEEeecCCCCCccceeEec--CCeEEEEe--CCEEEEECCC
Confidence            000 02344444332  2233 6799999998  67655544  4577888844

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.97  E-value=0.87  Score=38.77  Aligned_cols=226  Identities=10%  Similarity=0.036  Sum_probs=111.1

Q ss_pred             CceEEEEEccCCCceEEEEeeee-cCC----ceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccceeec
Q 048511            5 DNKIHLYRGQRTGKFVRACELKG-HTD----WIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~-h~~----~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      .-.|.+||..+ -....-..+.. |..    ....++++        .++++++..  +--..|.|-|+...+.+.++..
T Consensus        66 tDvv~~~D~~T-L~~~~EI~iP~k~R~~~~~~~~~~~ls--------~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~  136 (342)
T PF06433_consen   66 TDVVEIWDTQT-LSPTGEIEIPPKPRAQVVPYKNMFALS--------ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT  136 (342)
T ss_dssp             EEEEEEEETTT-TEEEEEEEETTS-B--BS--GGGEEE---------TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred             eeEEEEEecCc-CcccceEecCCcchheecccccceEEc--------cCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence            34688999988 43333233332 111    22334555        566666654  2334577777777666555443


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEe-ccccccceEEEEecCCCC----CC---CCCcccCCCceeEEeecCCe
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESL-LIGHEDWVYSVQWEPPST----AP---SDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~----~~---~~~~~~~~~~~l~s~~~d~~  149 (351)
                      +   .+..+....+.. +..-+.++.+..+.. -.|+......-.|.+...    ..   ..+..      ++--+..|.
T Consensus       137 P---GC~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~------~~F~Sy~G~  206 (342)
T PF06433_consen  137 P---GCWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR------LYFVSYEGN  206 (342)
T ss_dssp             T---SEEEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE------EEEEBTTSE
T ss_pred             C---CEEEEEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe------EEEEecCCE
Confidence            2   222222233222 333223333222211 112211111112332110    00   12222      555678899


Q ss_pred             EEEEeccCCCcceEEEEEeccccc-----cccceEEEEEcCCCCEEEEEee--------C--CeEEEEEcccCcccCccc
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSH-----SALGFYGGHWSPDGRSILAHGY--------G--GAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~--------d--g~i~~~d~~~~~~~~~~~  214 (351)
                      |+--|+....-.......+.....     ..+...-+++++..+.|++-..        |  ..|.+||+.+.     +.
T Consensus       207 v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-----kr  281 (342)
T PF06433_consen  207 VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-----KR  281 (342)
T ss_dssp             EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-----EE
T ss_pred             EEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-----eE
Confidence            999888864333333333211000     1122335788876666655332        2  24778888776     44


Q ss_pred             ccccccccccEEEEEeecCCC-EEEEE-eCCCcEEEEcCCCcc
Q 048511          215 QKVPSGHFAAVMDISWSRSSD-YLLSV-SHDQTTRVFAPWKNV  255 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~-~l~s~-~~dg~i~vwd~~~~~  255 (351)
                      +.++.. ..++.+|..+.+.+ +|++. ..++.+.+||..+++
T Consensus       282 v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  282 VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            666553 34678999998765 56544 458999999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.76  Score=37.97  Aligned_cols=162  Identities=7%  Similarity=0.006  Sum_probs=99.3

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      .+-...|.++.|+        |+.+.|++......-.||=..+++.+..+....-...-.+.+..+|++.++..++..+.
T Consensus        82 ~g~~~nvS~LTyn--------p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          82 LGETANVSSLTYN--------PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             ccccccccceeeC--------CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEE
Confidence            4445669999999        77888888877777777766677777666655555666777777777777766555443


Q ss_pred             EEEe------------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511          106 VESL------------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus       106 ~~~~------------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      ....                  ....+.....++|.      +....      |..+-.-+.+.||.+............
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d------~~~~~------l~~aKEr~P~~I~~~~~~~~~l~~~~~  221 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD------PVDHR------LFVAKERNPIGIFEVTQSPSSLSVHAS  221 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecC------CCCce------EEEEEccCCcEEEEEecCCcccccccc
Confidence            3221                  11114556788999      45555      777777778888887642111100000


Q ss_pred             ecc---ccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccC
Q 048511          168 VGE---LSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       168 ~~~---~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~  207 (351)
                      ...   ..-.-..+.++.|++. +..++-+..++.+.-.|....
T Consensus       222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            000   0001124667788874 456666667787777777654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.94  E-value=0.22  Score=44.44  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=85.6

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEee---cC-CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MD-KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      ...+..-+|+      +++..      ++..+   .. ..+.++|+.......+..+.     +   .-..-.|+|||+.
T Consensus       192 ~~~~~~p~ws------~~~~~------~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----g---~~~~P~fspDG~~  251 (425)
T COG0823         192 GSLILTPAWS------PDGKK------LAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----G---NNGAPAFSPDGSK  251 (425)
T ss_pred             CcceeccccC------cCCCc------eEEEEEecCCCceEEEEeccCCccceeeccC-----C---ccCCccCCCCCCE
Confidence            3456667788      55554      44432   22 45889999884333332221     2   2334689999987


Q ss_pred             EEEE-eeCCe--EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCc--EEEEcCCCccccccCccc
Q 048511          190 ILAH-GYGGA--FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQT--TRVFAPWKNVASLMGENS  263 (351)
Q Consensus       190 l~~~-~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~  263 (351)
                      |+-+ ..||.  |+++|+.++.      ...+....+.-+.=.|+|||++++-.+. .|.  |.+.+......       
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-------  318 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKN------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-------  318 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCc------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-------
Confidence            7654 45554  6666776653      2223322222235579999999876554 454  55555554431       


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecC-CCe--EEEEecC
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD-EKV--ARVFEAP  306 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~--v~vw~~~  306 (351)
                       ..+   ......-..-.|+|  ||.+|+..+. +|.  |.+.++.
T Consensus       319 -~ri---T~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         319 -TRL---TFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             -eEe---eccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccC
Confidence             111   11222222677888  8888886663 344  5555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.59  Score=38.39  Aligned_cols=98  Identities=16%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             eEEeecCCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccc
Q 048511          141 ILSASMDKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       141 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~  214 (351)
                      ++.+-.-|+ ..++|...  .....++.- ....|  ..-.-.|+|||.+|+..-.|     |.|-|||.+.+    ++.
T Consensus        83 vafARrPGtf~~vfD~~~--~~~pv~~~s-~~~RH--fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~----fqr  153 (366)
T COG3490          83 VAFARRPGTFAMVFDPNG--AQEPVTLVS-QEGRH--FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG----FQR  153 (366)
T ss_pred             EEEEecCCceEEEECCCC--CcCcEEEec-ccCce--eecccccCCCCcEEEeecCCCCCCCceEEEEecccc----cce
Confidence            555555554 56888887  333333321 01111  12235799999999876544     78999999865    466


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                      +-.+..|.-....+.|.+||+.|+.+.  |-|..-
T Consensus       154 vgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth  186 (366)
T COG3490         154 VGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH  186 (366)
T ss_pred             ecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence            778888887788999999999988763  445544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.91  E-value=1.2  Score=39.88  Aligned_cols=151  Identities=12%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCccccccccccccc
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      .|+.|.+.+....-...+.  . .........+..++++++++.....    ..+.+.++....... .....+......
T Consensus       203 ~v~~~~~gt~~~~d~lvfe--~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~-~~~~~l~~~~~~  278 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFE--E-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD-AKPKLLSPREDG  278 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS
T ss_pred             EEEEEECCCChHhCeeEEe--e-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc-CCcEEEeCCCCc
Confidence            3777777663222122222  1 1112236788999999988765543    357777776631000 112222222223


Q ss_pred             E-EEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC--
Q 048511          225 V-MDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK--  298 (351)
Q Consensus       225 v-~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--  298 (351)
                      + ..+... ++.+++...   .++.|.-.++.....     ..|..+.........+..+...   .+.+++..-.++  
T Consensus       279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~-----~~~~~~l~~~~~~~~l~~~~~~---~~~Lvl~~~~~~~~  349 (414)
T PF02897_consen  279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSP-----AEWWTVLIPEDEDVSLEDVSLF---KDYLVLSYRENGSS  349 (414)
T ss_dssp             -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSG-----GGEEEEEE--SSSEEEEEEEEE---TTEEEEEEEETTEE
T ss_pred             eEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccc-----ccceeEEcCCCCceeEEEEEEE---CCEEEEEEEECCcc
Confidence            3 333333 444444332   246677777766651     2333222111122245555554   356666666666  


Q ss_pred             eEEEEecC-chhhhc
Q 048511          299 VARVFEAP-LSFLKT  312 (351)
Q Consensus       299 ~v~vw~~~-~~~~~~  312 (351)
                      .|+++++. +.....
T Consensus       350 ~l~v~~~~~~~~~~~  364 (414)
T PF02897_consen  350 RLRVYDLDDGKESRE  364 (414)
T ss_dssp             EEEEEETT-TEEEEE
T ss_pred             EEEEEECCCCcEEee
Confidence            57778877 444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.072  Score=51.17  Aligned_cols=74  Identities=20%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      -.++|++++|+      .+|..      ++.|-.+|.|.+||+..  +...+.+....  .....+..+.+..++..+++
T Consensus       129 v~~~Vtsvafn------~dg~~------l~~G~~~G~V~v~D~~~--~k~l~~i~e~~--ap~t~vi~v~~t~~nS~llt  192 (1206)
T KOG2079|consen  129 VQGPVTSVAFN------QDGSL------LLAGLGDGHVTVWDMHR--AKILKVITEHG--APVTGVIFVGRTSQNSKLLT  192 (1206)
T ss_pred             cCCcceeeEec------CCCce------eccccCCCcEEEEEccC--CcceeeeeecC--CccceEEEEEEeCCCcEEEE
Confidence            35789999999      89999      99999999999999998  66666555221  22234555555566667888


Q ss_pred             EeeCCeEEEEEc
Q 048511          193 HGYGGAFHLWRN  204 (351)
Q Consensus       193 ~~~dg~i~~~d~  204 (351)
                      +...|.  +|.+
T Consensus       193 ~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  193 SDTGGS--FWKL  202 (1206)
T ss_pred             ccCCCc--eEEE
Confidence            877776  5655

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.83  E-value=0.72  Score=36.74  Aligned_cols=141  Identities=14%  Similarity=0.077  Sum_probs=78.4

Q ss_pred             eeeeEeeecCCeEEecCCce-------eEEEEEeccccccc--------eEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           83 VISLASYIEGPVLVAGSSSY-------QVSVESLLIGHEDW--------VYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~h~~~--------v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...-..+|+|+++.....+.       ...+...+.+|.-.        -+.++|.      .+.+.     +..+-+.+
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd------~d~K~-----fY~iDsln  179 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD------SDAKK-----FYYIDSLN  179 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccc------ccCcE-----EEEEccCc
Confidence            34455678888855422211       11233334444322        2456777      34333     15555667


Q ss_pred             CeEEEEeccCCCcceEEE---EEeccccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNV---VTVGELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~---~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      -.|.-||..-..+.....   +.+..... .....-.++...+|++.++.-..++|..+|..++     +.+.++.-...
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-----K~L~eiklPt~  254 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-----KILLEIKLPTP  254 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-----cEEEEEEcCCC
Confidence            778778843322433221   11111111 1111234555678888888888899999999998     45777776788


Q ss_pred             cEEEEEeec-CCCEEEE
Q 048511          224 AVMDISWSR-SSDYLLS  239 (351)
Q Consensus       224 ~v~~v~~sp-~~~~l~s  239 (351)
                      .|+++||-- +-..|++
T Consensus       255 qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  255 QITSCCFGGKNLDILYV  271 (310)
T ss_pred             ceEEEEecCCCccEEEE
Confidence            899999963 2234443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=1.8  Score=38.30  Aligned_cols=183  Identities=14%  Similarity=0.107  Sum_probs=108.4

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceeeccccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.|.+.|... .+. .-....+.  ....++++        ++++.+..+..   ++++.+.|..+........     
T Consensus        95 ~~~v~vid~~~-~~~-~~~~~vG~--~P~~~~~~--------~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-----  157 (381)
T COG3391          95 SNTVSVIDTAT-NTV-LGSIPVGL--GPVGLAVD--------PDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-----  157 (381)
T ss_pred             CCeEEEEcCcc-cce-eeEeeecc--CCceEEEC--------CCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-----
Confidence            46677777655 211 11111222  55678888        66766665544   6777777776655443311     


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                   .+ ..+ ..+++.      ++++.     .+++-..++.|.+.|...  ..
T Consensus       158 -----------------------------vG-~~P-~~~a~~------p~g~~-----vyv~~~~~~~v~vi~~~~--~~  193 (381)
T COG3391         158 -----------------------------VG-NTP-TGVAVD------PDGNK-----VYVTNSDDNTVSVIDTSG--NS  193 (381)
T ss_pred             -----------------------------cC-CCc-ceEEEC------CCCCe-----EEEEecCCCeEEEEeCCC--cc
Confidence                                         11 123 778888      67775     044445788999999776  32


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccc-cc-cccccEEEEEeecCCCE
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKV-PS-GHFAAVMDISWSRSSDY  236 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~-~~-~~~~~v~~v~~sp~~~~  236 (351)
                      ... -...........-..+.++|+++++.+....   +.+...|..++..     ... .. +.. ....+..+|+|..
T Consensus       194 v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-----~~~~~~~~~~-~~~~v~~~p~g~~  266 (381)
T COG3391         194 VVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-----TATDLPVGSG-APRGVAVDPAGKA  266 (381)
T ss_pred             eec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE-----EEeccccccC-CCCceeECCCCCE
Confidence            221 0000001122234678999999977766554   4888888887632     221 11 111 4566889999999


Q ss_pred             EEEEeC-CCcEEEEcCCCcc
Q 048511          237 LLSVSH-DQTTRVFAPWKNV  255 (351)
Q Consensus       237 l~s~~~-dg~i~vwd~~~~~  255 (351)
                      +.+... .+.+.+-|..+..
T Consensus       267 ~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         267 AYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             EEEEecCCCeEEEEeCCCCc
Confidence            877744 4888888887765

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.33  E-value=1.3  Score=41.73  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=72.7

Q ss_pred             CCCEEEEEeeCCeEEEEEcccCc---------c------cCcccccccccccccEEEEEee--cCCCEEEEEeCCCcEEE
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVD---------I------DNWQPQKVPSGHFAAVMDISWS--RSSDYLLSVSHDQTTRV  248 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~---------~------~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~s~~~dg~i~v  248 (351)
                      +...|+.+..||.|.+|..+.--         .      ...++...+. -....++++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            45688899999999999763210         0      0011222222 23468899998  78888998888888888


Q ss_pred             EcCCCccccccCccceEEeccccccccceeEEEEeeeC-C--C-cEEEEecCCCeEEEEec
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK-G--N-HRFVSGADEKVARVFEA  305 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--~-~~l~s~~~dg~v~vw~~  305 (351)
                      |-+......     .  .......+.+.|.+++|.+.. +  | .+|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r-----~--~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDER-----F--YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccc-----c--ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            876543210     0  111111366679999998832 1  2 27888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.30  E-value=0.88  Score=42.87  Aligned_cols=109  Identities=10%  Similarity=0.020  Sum_probs=70.3

Q ss_pred             eEEeecCCeEEEEeccCC-----Cc----ce-E--EEEEeccccccccceEEEEEc--CCCCEEEEEeeCCeEEEEEccc
Q 048511          141 ILSASMDKTMMIWQPEKT-----TG----IW-M--NVVTVGELSHSALGFYGGHWS--PDGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~-----~~----~~-~--~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~dg~i~~~d~~~  206 (351)
                      |+.+..||.|.+|.++.-     +.    .. .  ..++..........+++++++  ...++||+++....|.||-+..
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l  196 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL  196 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence            999999999999987530     00    00 0  000000111234478999998  7888999999999888887654


Q ss_pred             CcccCcccccccccccccEEEEEeecCC---C---EEEEEeCCCcEEEEcC
Q 048511          207 VDIDNWQPQKVPSGHFAAVMDISWSRSS---D---YLLSVSHDQTTRVFAP  251 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~---~l~s~~~dg~i~vwd~  251 (351)
                      ...+  .....-..+...|-+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       197 ~~~r--~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  197 VDER--FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccc--cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            2211  1111112256678999998753   2   6777888999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.15  Score=49.44  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=81.9

Q ss_pred             eEEeecCCeEEEEeccCCCcce---EEEEEecc-ccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIW---MNVVTVGE-LSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~-~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      ++..+.+-.|..||+++.....   ...+.... .........++.|+|.-. ..++...|+.|++..+....    +.+
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~----~~v  192 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA----QNV  192 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh----hhh
Confidence            3334445579999998632111   11111000 012223456778888543 45667788989888775432    122


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEE
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVS  293 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s  293 (351)
                      ..+ ......++++|+|.|+.++.|-..|++.-|...-...        ..+..+. ...+.|.|+.|..  ...+++.
T Consensus       193 ~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--------~~ip~Pp~~e~yrvl~v~Wl~--t~eflvv  260 (1405)
T KOG3630|consen  193 TSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--------SEIPEPPVEENYRVLSVTWLS--TQEFLVV  260 (1405)
T ss_pred             ccc-CcccceeeEEeccccceeeEecCCCeEEEeeccccee--------ecccCCCcCCCcceeEEEEec--ceeEEEE
Confidence            222 2345689999999999999999999998887643320        1222221 2246799999988  5556554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.20  E-value=1.4  Score=36.09  Aligned_cols=98  Identities=8%  Similarity=0.059  Sum_probs=49.4

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV---  217 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---  217 (351)
                      |+.......++++|..+  -.....+.+......-..+.-+.|- +|...|=.-....|...|..++....+--+..   
T Consensus       142 Li~SDGS~~L~~~dP~~--f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~  218 (264)
T PF05096_consen  142 LIMSDGSSRLYFLDPET--FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRP  218 (264)
T ss_dssp             EEEE-SSSEEEEE-TTT---SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred             EEEECCccceEEECCcc--cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence            66666677899999887  5555555544332333345556664 45544544455666666666664211100000   


Q ss_pred             -------cccccccEEEEEeecCCCEEEEEe
Q 048511          218 -------PSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       218 -------~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                             ......-.+.|++.|..+.|...+
T Consensus       219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             HHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence                   011135688999999776655444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.12  E-value=0.88  Score=41.34  Aligned_cols=122  Identities=11%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             ceEEEEEcCC----CCEEEEEeeCCeEEEEEcccCcccCccccccccc-cc----ccEEEEEeecCCCEEEEEeCCCcEE
Q 048511          177 GFYGGHWSPD----GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HF----AAVMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       177 ~i~~i~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~----~~v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                      .|..+.|.|-    -..+++.-....|.+|.+........+.+..-.. ..    --..++.|+|....|+.-.....-.
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            4889999984    3356666677889999985321111111111110 11    1124567999988887666554445


Q ss_pred             EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecCchh
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAPLSF  309 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~  309 (351)
                      +++++....        +....+ ...+-|.|.+|..  ||+.| ++.+..=.-++||-..+.
T Consensus       138 ~~sV~~d~s--------rVkaDi-~~~G~IhCACWT~--DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  138 LPSVHCDSS--------RVKADI-KTSGLIHCACWTK--DGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             eeeeeeCCc--------eEEEec-cCCceEEEEEecC--cCCEEEEEeCCeEEEEEecCchhh
Confidence            666654441        011122 2334599999999  66655 455556677899965443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.00  E-value=2.4  Score=37.64  Aligned_cols=59  Identities=10%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                      ...+.+-+.||.+.+|+-+.--     ....+.. .--...++|.+.-..|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~-----f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFA-----FSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEE-----EEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            3578889999999999876631     1122221 222234788888888999998888888876

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=0.24  Score=48.21  Aligned_cols=127  Identities=9%  Similarity=0.002  Sum_probs=80.7

Q ss_pred             cceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccc------cccccEEEEEeecCCCE-EEEEeCCCcE
Q 048511          176 LGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPS------GHFAAVMDISWSRSSDY-LLSVSHDQTT  246 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~-l~s~~~dg~i  246 (351)
                      ..|..+...+|+...++...  +-.|..||++.-....+....-+.      .......++.|+|.-.. .+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35566666777775555443  448999999764321111112122      12234567788886433 4566789999


Q ss_pred             EEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                      ++..+.....         .+..+ .-....+|++|+|  .|..++.|-..|++.-|....+....+.
T Consensus       181 ~V~~~~~~~~---------~v~s~-p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~leik~~ip  236 (1405)
T KOG3630|consen  181 RVKSTKQLAQ---------NVTSF-PVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPSLEIKSEIP  236 (1405)
T ss_pred             hhhhhhhhhh---------hhccc-CcccceeeEEecc--ccceeeEecCCCeEEEeecccceeeccc
Confidence            9988754431         12221 2345589999999  8999999999999999987766554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.75  E-value=1.2  Score=36.77  Aligned_cols=168  Identities=14%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC------------------CCcEEEEec
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ------------------DKVIRIWKL   66 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~------------------dg~i~iwd~   66 (351)
                      -|.|-|||...  .+..+..+..|.-.-..|.+.        +||+.|+.+..                  .-++.+-|.
T Consensus       139 rGViGvYd~r~--~fqrvgE~~t~GiGpHev~lm--------~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~  208 (366)
T COG3490         139 RGVIGVYDARE--GFQRVGEFSTHGIGPHEVTLM--------ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA  208 (366)
T ss_pred             CceEEEEeccc--ccceecccccCCcCcceeEEe--------cCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence            46788999986  477888899998888899999        88999887742                  012333443


Q ss_pred             CCCcccceeecc---cccceeeeEeeecCCeEEecCCceeEEEEEecc--------------------ccccceEEEEec
Q 048511           67 ALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI--------------------GHEDWVYSVQWE  123 (351)
Q Consensus        67 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~h~~~v~~l~~~  123 (351)
                      .+++.+.+...+   ....+..++...+|.+++.+.-.+.-.-...+.                    .....|-+++.+
T Consensus       209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n  288 (366)
T COG3490         209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN  288 (366)
T ss_pred             cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence            444443333322   234566777788888777643222111000111                    112235567766


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEE
Q 048511          124 PPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWR  203 (351)
Q Consensus       124 p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d  203 (351)
                      .     .++..      .+|+=..+...+||..+  +..+....+.+       ...+  -+...-+++.+.+|.+.++.
T Consensus       289 ~-----~~glV------~lTSP~GN~~vi~da~t--G~vv~~a~l~d-------aaGv--a~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         289 R-----RDGLV------ALTSPRGNRAVIWDAAT--GAVVSEAALPD-------AAGV--AAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             c-----cCCeE------EEecCCCCeEEEEEcCC--CcEEecccccc-------cccc--eeccCceEEecCCceEEecc
Confidence            2     33444      55555667788999999  76665444211       1122  23445577778888888874


Q ss_pred             c
Q 048511          204 N  204 (351)
Q Consensus       204 ~  204 (351)
                      -
T Consensus       347 ~  347 (366)
T COG3490         347 R  347 (366)
T ss_pred             c
Confidence            3

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.72  E-value=2.2  Score=35.68  Aligned_cols=154  Identities=7%  Similarity=-0.021  Sum_probs=85.9

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      ..++.|+.|..+| |.++++..........                                    +...|..+...   
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------------------------~~~~I~ql~vl---   44 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------------------------KLSSITQLSVL---   44 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe------------------------------------ecceEEEEEEe---
Confidence            5678999999998 8888883222111111                                    22338888888   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE---EEe----ccccccccceEEEE--EcCCCCEEEEEeeCC
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV---VTV----GELSHSALGFYGGH--WSPDGRSILAHGYGG  197 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~----~~~~~~~~~i~~i~--~~~~~~~l~~~~~dg  197 (351)
                         ++-+.      |++- .|+.++++++..........   ...    .........+...+  -...+...++.....
T Consensus        45 ---~~~~~------llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   45 ---PELNL------LLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             ---cccCE------EEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence               44444      4443 45999999988622211100   000    00001122333333  123444555566666


Q ss_pred             eEEEEEcccCcccCc-ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          198 AFHLWRNVGVDIDNW-QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +|.+|....... .+ ...+.+. -...+..++|.  ++.|+.|..+ ...+.|+.++.
T Consensus       115 ~i~i~~~~~~~~-~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~  168 (275)
T PF00780_consen  115 KILIYEWNDPRN-SFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS  168 (275)
T ss_pred             EEEEEEEECCcc-cccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence            999999876421 12 2334443 34678889998  4567777644 47788988665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=1.5  Score=38.61  Aligned_cols=155  Identities=10%  Similarity=0.049  Sum_probs=90.5

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      .+-+-..|.+.-|-+..........+.    ....++|.++.|++|.+.+|+--.+.+|.+++....+.. .....+.+.
T Consensus        36 qlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-l~~~~~ck~  110 (657)
T KOG2377|consen   36 QLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-LEYTQECKT  110 (657)
T ss_pred             eEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh-hHHHHHhcc
Confidence            444445556667766653322222332    244568999999999999999999999999998443210 012223333


Q ss_pred             ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-Eec-CCC
Q 048511          221 HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-SGA-DEK  298 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~-~dg  298 (351)
                      ....|.+.+|+.+.. +|..+ +.-+.+|-+....         +.+...+.|.-.|+-..|++  +...++ +.+ ...
T Consensus       111 k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pek---------rslRlVks~~~nvnWy~yc~--et~v~LL~t~~~~n  177 (657)
T KOG2377|consen  111 KNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPEK---------RSLRLVKSHNLNVNWYMYCP--ETAVILLSTTVLEN  177 (657)
T ss_pred             CcceeEEEEEecCee-EEEEe-cCCeEEEEEchhh---------hhhhhhhhcccCccEEEEcc--ccceEeeecccccc
Confidence            445689999997743 44443 3346677664443         23344445666788888888  444433 333 444


Q ss_pred             eEEEEecCchhhhce
Q 048511          299 VARVFEAPLSFLKTL  313 (351)
Q Consensus       299 ~v~vw~~~~~~~~~~  313 (351)
                      ++.=+.++...+..+
T Consensus       178 ~lnpf~~~~~~v~kL  192 (657)
T KOG2377|consen  178 VLNPFHFRAGTMSKL  192 (657)
T ss_pred             ccccEEEeeceeeec
Confidence            444444443333333

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.52  E-value=1.9  Score=37.97  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=76.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEee-----------cCC-eEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSAS-----------MDK-TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                      ....|+|.      ++|++      +++-.           ..+ .|.+++-....+..-....+.   ..-.....+++
T Consensus        15 ~P~~ia~d------~~G~l------~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa---~~l~~p~Gi~~   79 (367)
T TIGR02604        15 NPIAVCFD------ERGRL------WVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA---EELSMVTGLAV   79 (367)
T ss_pred             CCceeeEC------CCCCE------EEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee---cCCCCccceeE
Confidence            45678888      67776      55532           223 677776554334322211111   12224577899


Q ss_pred             cCCCCEEEEEeeCCeEEEEEcccCcccC--cc-ccccccc----ccccEEEEEeecCCCEEEEEeCC-------------
Q 048511          184 SPDGRSILAHGYGGAFHLWRNVGVDIDN--WQ-PQKVPSG----HFAAVMDISWSRSSDYLLSVSHD-------------  243 (351)
Q Consensus       184 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~-~~~~~~~----~~~~v~~v~~sp~~~~l~s~~~d-------------  243 (351)
                      .+++  |+++......++.|........  .+ .+..+..    +......++|.|||.+.++-+..             
T Consensus        80 ~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~  157 (367)
T TIGR02604        80 AVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE  157 (367)
T ss_pred             ecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence            8888  4444444433344543221100  01 1122222    13447789999999876655421             


Q ss_pred             ------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          244 ------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       244 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                            +.|.-++.....        ++.+.  .+ ......++|++  +++++++-..+
T Consensus       158 ~~~~~~g~i~r~~pdg~~--------~e~~a--~G-~rnp~Gl~~d~--~G~l~~tdn~~  204 (367)
T TIGR02604       158 SRQGLGGGLFRYNPDGGK--------LRVVA--HG-FQNPYGHSVDS--WGDVFFCDNDD  204 (367)
T ss_pred             cccccCceEEEEecCCCe--------EEEEe--cC-cCCCccceECC--CCCEEEEccCC
Confidence                  234444433322        11111  11 23367899998  78887765544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.47  E-value=3.2  Score=36.92  Aligned_cols=150  Identities=11%  Similarity=0.026  Sum_probs=84.6

Q ss_pred             eeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc---C-CCCEEEEEeeCCeEEEEEcccCccc----C
Q 048511          140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS---P-DGRSILAHGYGGAFHLWRNVGVDID----N  211 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---~-~~~~l~~~~~dg~i~~~d~~~~~~~----~  211 (351)
                      .+++||..|.++||+....+......+.-   ..-..+|..+..-   + .....++.=.-..+.+|.+......    .
T Consensus        39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   39 KIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             EEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            39999999999999997633221111110   1233466666543   2 2233333456778889988432110    0


Q ss_pred             ccccccccccc--ccEEEEEeec----C-CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          212 WQPQKVPSGHF--AAVMDISWSR----S-SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       212 ~~~~~~~~~~~--~~v~~v~~sp----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ...+..+..|.  .....++.-|    . ..+|+.-+.||.+.+|+-+....       -..+.. ...   .-.+.+.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-------~~~lp~-~ll---PgPl~Y~~  184 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-------SRFLPD-FLL---PGPLCYCP  184 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-------EEEcCC-CCC---CcCeEEee
Confidence            00112222232  2233344444    1 35788889999999998754430       011111 122   34577888


Q ss_pred             eCCCcEEEEecCCCeEEEEec
Q 048511          285 GKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       285 ~~~~~~l~s~~~dg~v~vw~~  305 (351)
                        ..+.|++++.+..+..|+.
T Consensus       185 --~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  185 --RTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             --cCCEEEEecCceeEEEecH
Confidence              6788999999999988874

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.45  E-value=1.3  Score=42.44  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=29.9

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      +...|..+.|+|.+   .++..      |+.-..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s---~~~~~------l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWS---ESDSH------LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCC---CCCCe------EEEEecCCEEEEEecCC
Confidence            45679999999866   45666      88889999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.31  E-value=0.16  Score=28.45  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=25.8

Q ss_pred             cceEEEEecCCCCCCCCC--cccCCCceeEEeecCCeEEEEeccC
Q 048511          115 DWVYSVQWEPPSTAPSDG--VSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      +.|.+++|+|     ..+  .+      |+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP-----~~~~~DL------L~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSP-----EPGGNDL------LAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCC-----CCCcccE------EEEEccCCeEEEEEccc
Confidence            3688999997     333  56      88888889999999995

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.27  E-value=0.17  Score=28.35  Aligned_cols=31  Identities=19%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             ccEEEEEeecCC---CEEEEEeCCCcEEEEcCCC
Q 048511          223 AAVMDISWSRSS---DYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       223 ~~v~~v~~sp~~---~~l~s~~~dg~i~vwd~~~  253 (351)
                      +.|+++.|+|+.   .+|+.+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999854   4777777789999999985

It contains a characteristic DLL sequence motif.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.10  E-value=2  Score=33.08  Aligned_cols=47  Identities=17%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-CcceEEEEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-TGIWMNVVT  167 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~  167 (351)
                      ..|..++|+|.+.. ++     .+-+|++...++.|.||..... .+++.....
T Consensus        86 ~~vv~~aWSP~Gl~-~~-----~rClLavLTs~~~l~l~~~~~~~~~~W~~v~d  133 (173)
T PF12657_consen   86 SQVVSAAWSPSGLG-PN-----GRCLLAVLTSNGRLSLYGPPGNPQGEWNRVAD  133 (173)
T ss_pred             ccEEEEEECCCCCC-CC-----CceEEEEEcCCCeEEEEecCCCccccEeeeee
Confidence            37899999986643 22     2334899999999999998743 355555443

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.97  E-value=5.2  Score=37.10  Aligned_cols=23  Identities=9%  Similarity=0.102  Sum_probs=19.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .+.+++.++.||.++.+|.++++
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe  493 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGE  493 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCC
Confidence            44567778889999999999998

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.85  E-value=4.5  Score=35.95  Aligned_cols=42  Identities=0%  Similarity=-0.110  Sum_probs=35.0

Q ss_pred             cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511          275 HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      ..+.+++.+|  ++.+.|+...=|+|.++|+. +..++.++++-+
T Consensus       308 R~~~~i~~sP--~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  308 REGESICLSP--SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             ceEEEEEECC--CCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            4488899999  88888888888999999987 888888887653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.77  E-value=3.3  Score=34.18  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=83.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      .+.+.+++      ++++.      ++...   ....+.++....  .  .....      ....+..-.|++++...+.
T Consensus        25 ~~~s~AvS------~dg~~------~A~v~~~~~~~~L~~~~~~~--~--~~~~~------~g~~l~~PS~d~~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVS------PDGSR------VAAVSEGDGGRSLYVGPAGG--P--VRPVL------TGGSLTRPSWDPDGWVWTV   82 (253)
T ss_pred             cccceEEC------CCCCe------EEEEEEcCCCCEEEEEcCCC--c--ceeec------cCCccccccccCCCCEEEE
Confidence            57788999      67776      65554   333455554332  1  11111      1225677789999776666


Q ss_pred             EeeCCeEEEEE-cccCcccCcccc-cccccccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCcccc-ccCccceEE
Q 048511          193 HGYGGAFHLWR-NVGVDIDNWQPQ-KVPSGHFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVAS-LMGENSWHE  266 (351)
Q Consensus       193 ~~~dg~i~~~d-~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~-~~~~~~~~~  266 (351)
                      ...+...+++. ...+..   ..+ .....-...|.++.+||||..++...   .++.|.|=-+.....- .  ......
T Consensus        83 ~~~~~~~~~~~~~~~g~~---~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~  157 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTG---EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGP  157 (253)
T ss_pred             EcCCCceEEEEecCCCcc---eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccc
Confidence            66666666663 222211   111 11111112899999999999877655   3577777665432211 0  001111


Q ss_pred             eccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          267 VARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ..........++.++|.+  ++.+++.+...
T Consensus       158 ~~~~~~~~~~v~~v~W~~--~~~L~V~~~~~  186 (253)
T PF10647_consen  158 RRVAPPLLSDVTDVAWSD--DSTLVVLGRSA  186 (253)
T ss_pred             eEecccccCcceeeeecC--CCEEEEEeCCC
Confidence            111212345689999998  77777665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.48  E-value=6.4  Score=36.53  Aligned_cols=29  Identities=17%  Similarity=0.106  Sum_probs=22.6

Q ss_pred             CCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          287 GNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       287 ~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .+.+++.++.||.++.+|.. |+.+-.++-
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            35677788889999999987 877766543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.46  E-value=0.45  Score=38.26  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc-----cccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP-----QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      +..++++|++.+.+|.+++||+.+.+...... ...++-..     ......|..+.++.  +|.-|++-+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEec
Confidence            45578899999999999999999887432110 00011100     02445588888887  787777765 47789998


Q ss_pred             cC
Q 048511          305 AP  306 (351)
Q Consensus       305 ~~  306 (351)
                      .+
T Consensus        94 ~~   95 (219)
T PF07569_consen   94 PD   95 (219)
T ss_pred             cc
Confidence            77

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.46  E-value=3.2  Score=39.81  Aligned_cols=82  Identities=13%  Similarity=0.127  Sum_probs=53.6

Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-CcccCc-------cccc-----c--cccccccEEEEEeecC---CC
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VDIDNW-------QPQK-----V--PSGHFAAVMDISWSRS---SD  235 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~-------~~~~-----~--~~~~~~~v~~v~~sp~---~~  235 (351)
                      ....|..+.++|+|.+++..|..|...+.=.+. +....+       .|..     .  ...+...|..+.|+|.   +.
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            345688999999999999988876444432221 100000       0000     0  1123457899999996   47


Q ss_pred             EEEEEeCCCcEEEEcCCCcc
Q 048511          236 YLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .|+.-..|+++|+||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888899999999997544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.29  E-value=1.2  Score=35.58  Aligned_cols=96  Identities=8%  Similarity=0.046  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCEEE-EEeeCCeEEEEE--cccCcccCccccccccc----ccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          179 YGGHWSPDGRSIL-AHGYGGAFHLWR--NVGVDIDNWQPQKVPSG----HFAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       179 ~~i~~~~~~~~l~-~~~~dg~i~~~d--~~~~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                      ..++|+.+.+.+. +-+.+-.|.-||  +.++.......+..++.    ..-..-.++...+|.+.++.=..++|..+|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            4678888777554 445667787777  55554322222222221    1112234555667888777777889999999


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEee
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      .+++          .+..+......|+|++|-.
T Consensus       241 ~tGK----------~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGK----------ILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCc----------EEEEEEcCCCceEEEEecC
Confidence            9998          4444445567799999965

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.22  E-value=1.7  Score=43.27  Aligned_cols=154  Identities=8%  Similarity=0.034  Sum_probs=86.7

Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE--------EcCCCCEEEEEeeCCeEEEEEcccCc----c
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH--------WSPDGRSILAHGYGGAFHLWRNVGVD----I  209 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~--------~~~~~~~l~~~~~dg~i~~~d~~~~~----~  209 (351)
                      +-.+.|+.+.+|+.++  +.....+.     +....|..+.        |-|.=+++++-+.--.|.++-+.-.+    .
T Consensus        93 aWiTiDn~L~lWny~~--~~e~~~~d-----~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~  165 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYES--DNELAEYD-----GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL  165 (1311)
T ss_pred             eEEEeCCeEEEEEcCC--CCcccccc-----chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence            3445688999999998  32222221     2222333332        34444666666666677777653221    1


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc--------cc---cC---ccceEEecccc-ccc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA--------SL---MG---ENSWHEVARPQ-VHG  274 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~--------~~---~~---~~~~~~~~~~~-~~~  274 (351)
                      ..+....++......|+++....+|+.+++| .||  .||.+.....        ..   +.   ......+..+. .+.
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~  242 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK  242 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence            1111112222234578889988899988876 455  4554422110        00   00   00000111222 456


Q ss_pred             cceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          275 HDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      .+|..+++..  ....+.+-++.|+|.+|++.+
T Consensus       243 dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  243 DPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            6899999987  788899999999999999874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.17  E-value=0.79  Score=36.84  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCcc-cccc-cc-------cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ-PQKV-PS-------GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~-~~-------~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +..++.++++-+.+|.+++||+.+.+..... .+.. +.       .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4567889999999999999999886431110 1111 11       3456788899998998777765 67899999754


Q ss_pred             ccccccCccceEEeccc
Q 048511          254 NVASLMGENSWHEVARP  270 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~  270 (351)
                      +        +|..+...
T Consensus        97 ~--------~W~~vsd~  105 (219)
T PF07569_consen   97 G--------CWIRVSDS  105 (219)
T ss_pred             c--------eeEEeccc
Confidence            4        56665443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.05  E-value=8.1  Score=36.51  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=27.5

Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +.+..+..||+.++|+--...|.|.+-+....+
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            567788999999999988899999988876554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=92.75  E-value=10  Score=37.00  Aligned_cols=222  Identities=10%  Similarity=0.078  Sum_probs=130.1

Q ss_pred             ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-----------CceeEEEEEecccccc--
Q 048511           49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-----------SSYQVSVESLLIGHED--  115 (351)
Q Consensus        49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~h~~--  115 (351)
                      .+.|+++.. +.+++..++.-+.+.....+.......+++.+....+.+..           ....+.....+..++-  
T Consensus       684 ~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  684 PDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             CceEEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            446666654 56888877765554444444455666666666444444321           1222233333222211  


Q ss_pred             -------------ceEEEEecCCCCCCCC-CcccCCCceeEEeec----------CCeEEEEeccCCCcceEEEEEeccc
Q 048511          116 -------------WVYSVQWEPPSTAPSD-GVSCQQPSSILSASM----------DKTMMIWQPEKTTGIWMNVVTVGEL  171 (351)
Q Consensus       116 -------------~v~~l~~~p~~~~~~~-~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~  171 (351)
                                   .+.+..|.      .| +.+      +++|..          .|.|.++....  ...++.+.-   
T Consensus       763 l~~hef~~~E~~~Si~s~~~~------~d~~t~------~vVGT~~v~Pde~ep~~GRIivfe~~e--~~~L~~v~e---  825 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFT------DDPNTY------YVVGTGLVYPDENEPVNGRIIVFEFEE--LNSLELVAE---  825 (1096)
T ss_pred             Eeeccccccceeeeeeeeeec------CCCceE------EEEEEEeeccCCCCcccceEEEEEEec--CCceeeeee---
Confidence                         23344466      33 445      666653          57788888776  222222220   


Q ss_pred             cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                      ..-.+.+.++.. -+|+++|  +.+..|++|+..+.+     .++.-..+..++..+...-.+..++.|.--+++.+...
T Consensus       826 ~~v~Gav~aL~~-fngkllA--~In~~vrLye~t~~~-----eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  826 TVVKGAVYALVE-FNGKLLA--GINQSVRLYEWTTER-----ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             eeeccceeehhh-hCCeEEE--ecCcEEEEEEccccc-----eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence            012233444432 2455444  567789999998762     35555567778889998889999999988888887766


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +..+      ..+..+++. .+...++++.+..   +..++.+..+|.+.+-..+
T Consensus       898 ~~~e------g~f~evArD-~~p~Wmtaveil~---~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  898 KGDE------GNFEEVARD-YNPNWMTAVEILD---DDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eccC------CceEEeehh-hCccceeeEEEec---CceEEeecccccEEEEEec
Confidence            6554      234455544 4667788888875   6667777788887776543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.68  E-value=3  Score=36.81  Aligned_cols=165  Identities=12%  Similarity=-0.005  Sum_probs=86.9

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc-cccceE-EEEEcCCCCEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH-SALGFY-GGHWSPDGRSI  190 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~i~-~i~~~~~~~~l  190 (351)
                      -...|..+-..      ||++.      +..-+. ..+.++++.+..-+..+...  ..++ ....|+ .+..-..|..+
T Consensus       219 ~~~~v~qllL~------Pdg~~------LYv~~g-~~~~v~~L~~r~l~~rkl~~--dspg~~~~~Vte~l~lL~Gg~SL  283 (733)
T COG4590         219 PFSDVSQLLLT------PDGKT------LYVRTG-SELVVALLDKRSLQIRKLVD--DSPGDSRHQVTEQLYLLSGGFSL  283 (733)
T ss_pred             CccchHhhEEC------CCCCE------EEEecC-CeEEEEeecccccchhhhhh--cCCCchHHHHHHHHHHHhCceeE
Confidence            34456666666      67776      554433 67889988763211111111  0011 001111 11223356678


Q ss_pred             EEEeeCCeEEEE-EcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc
Q 048511          191 LAHGYGGAFHLW-RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       191 ~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      ++++.||.|.-| |.+......+..++.++-....+..+.-..+.+-+++-...|++.++.....+.         .+..
T Consensus       284 Lv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---------lL~~  354 (733)
T COG4590         284 LVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---------LLFE  354 (733)
T ss_pred             EEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---------eehh
Confidence            888889888776 554443222333333333333444333333445577777888888876544431         1111


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .  .-..+.-++++|  .+.++++- +.|.++++.++
T Consensus       355 ~--~~~~~~~~~~Sp--~~~~Ll~e-~~gki~~~~l~  386 (733)
T COG4590         355 R--AYQAPQLVAMSP--NQAYLLSE-DQGKIRLAQLE  386 (733)
T ss_pred             h--hhcCcceeeeCc--ccchheee-cCCceEEEEec
Confidence            1  112356788999  77777664 55678888765

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.61  E-value=4.3  Score=32.16  Aligned_cols=151  Identities=9%  Similarity=-0.013  Sum_probs=80.4

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---C---eEEEEE-cccCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---G---AFHLWR-NVGVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g---~i~~~d-~~~~~~~~~~  213 (351)
                      |+.+...+.|.+|++..........+.      .-+.|..+.++..|.++++--.+   .   .+|+|= .+..... ..
T Consensus        31 Lfva~~g~~Vev~~l~~~~~~~~~~F~------Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~-~~  103 (215)
T PF14761_consen   31 LFVAASGCKVEVYDLEQEECPLLCTFS------TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE-NS  103 (215)
T ss_pred             EEEEcCCCEEEEEEcccCCCceeEEEc------chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc-CC
Confidence            545466778999999964455566554      23678999999999999986543   2   566662 2211000 01


Q ss_pred             ccc-cccc---------------------ccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc
Q 048511          214 PQK-VPSG---------------------HFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       214 ~~~-~~~~---------------------~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                      ++. .+-|                     -...+.+++..| .|++ +.|+ ++.+.||.+..................+
T Consensus       104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l  181 (215)
T PF14761_consen  104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSL  181 (215)
T ss_pred             cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEEEecccccEEechhhh
Confidence            111 1111                     123456677777 4554 4454 5688999876544200000000000111


Q ss_pred             ccc--ccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          271 QVH--GHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       271 ~~~--~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ..|  +-.+..+++..    .++|..++. .++++.+
T Consensus       182 ~~~~~~~~p~~v~ic~----~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  182 IDHIDNFKPTQVAICE----GYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             hheecCceEEEEEEEe----eEEEEecCC-EEEEEEE
Confidence            111  12256777764    567766544 5566654

>PLN02193 nitrile-specifier protein

Probab=92.60  E-value=8.1  Score=35.32  Aligned_cols=72  Identities=11%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             CCCEEEEEeeC----CeEEEEEcccCcccCcccccccc--cccccEEEEEeecCCCEEEEEeCC--------------Cc
Q 048511          186 DGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHD--------------QT  245 (351)
Q Consensus       186 ~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~d--------------g~  245 (351)
                      +++.++.++.+    ..+.+||+.+.+   |..+....  .......+++ .-++++++.|+.+              ..
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~---W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~nd  403 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDK---WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDG  403 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCE---EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceecc
Confidence            56666766655    468899988764   33232210  0111111222 2356677777753              24


Q ss_pred             EEEEcCCCccccccCccceEEecc
Q 048511          246 TRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      +.+||+.+.        .|..+..
T Consensus       404 v~~~D~~t~--------~W~~~~~  419 (470)
T PLN02193        404 TFALDTETL--------QWERLDK  419 (470)
T ss_pred             EEEEEcCcC--------EEEEccc
Confidence            778887655        4666554

>PRK13684 Ycf48-like protein; Provisional

Probab=92.48  E-value=6.6  Score=34.01  Aligned_cols=157  Identities=11%  Similarity=0.217  Sum_probs=86.7

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE-EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI-WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ...+.++.+.      +++.+      ++++ ..|.+.. +|-..  ..+.....     .....++.+.+.++++.+++
T Consensus       172 ~g~~~~i~~~------~~g~~------v~~g-~~G~i~~s~~~gg--~tW~~~~~-----~~~~~l~~i~~~~~g~~~~v  231 (334)
T PRK13684        172 AGVVRNLRRS------PDGKY------VAVS-SRGNFYSTWEPGQ--TAWTPHQR-----NSSRRLQSMGFQPDGNLWML  231 (334)
T ss_pred             cceEEEEEEC------CCCeE------EEEe-CCceEEEEcCCCC--CeEEEeeC-----CCcccceeeeEcCCCCEEEE
Confidence            4467888888      56655      5444 4554432 22111  22322211     33457889999999887665


Q ss_pred             EeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      + ..|.+++=..+.+.  .|+.+..- ......+.++.+.|++..+++ +.+|.+. .....++       .|+.+....
T Consensus       232 g-~~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~-------tW~~~~~~~  299 (334)
T PRK13684        232 A-RGGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK-------TWEKDPVGE  299 (334)
T ss_pred             e-cCCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC-------CCeECCcCC
Confidence            4 55765432233332  12222111 112235788999998776654 4677654 3444443       677654322


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      .-....+.+.|..  ++.. ...+..|.|.-|+-
T Consensus       300 ~~~~~~~~~~~~~--~~~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        300 EVPSNFYKIVFLD--PEKG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             CCCcceEEEEEeC--CCce-EEECCCceEEEecC
Confidence            2234577888876  4444 55667888877764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.47  E-value=7.1  Score=34.35  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=35.6

Q ss_pred             cceEEEEEcCCCCEEEEEeeC-------------------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCE
Q 048511          176 LGFYGGHWSPDGRSILAHGYG-------------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~d-------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      .....++|.|+|.+.++-+..                   |.|.-++..+++      ...+...-.....++|+|+|++
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~------~e~~a~G~rnp~Gl~~d~~G~l  197 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK------LRVVAHGFQNPYGHSVDSWGDV  197 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe------EEEEecCcCCCccceECCCCCE
Confidence            346789999999866654421                   345555555432      1111111233568999999988


Q ss_pred             EEEEe
Q 048511          237 LLSVS  241 (351)
Q Consensus       237 l~s~~  241 (351)
                      +++-.
T Consensus       198 ~~tdn  202 (367)
T TIGR02604       198 FFCDN  202 (367)
T ss_pred             EEEcc
Confidence            77644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.24  E-value=6.1  Score=33.11  Aligned_cols=118  Identities=7%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe------eCCeEEEEEcccCcccCcccccc-c-
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG------YGGAFHLWRNVGVDIDNWQPQKV-P-  218 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~~~~-~-  218 (351)
                      -..|++||...  .+|...-.     .-.+.|..+.|..+.+.++.|.      ....+..||+.+..   |..... . 
T Consensus        15 C~~lC~yd~~~--~qW~~~g~-----~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~---w~~~~~~~s   84 (281)
T PF12768_consen   15 CPGLCLYDTDN--SQWSSPGN-----GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT---WSSLGGGSS   84 (281)
T ss_pred             CCEEEEEECCC--CEeecCCC-----CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe---eeecCCccc
Confidence            45699999988  66654332     3566899999986666666664      34578899988753   211211 1 


Q ss_pred             ccccccEEEEEeec-CC-CEEEEEe-CCC--cEEEEcCCCccccccCccceEEecc-ccccccceeEEEEee
Q 048511          219 SGHFAAVMDISWSR-SS-DYLLSVS-HDQ--TTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQ  284 (351)
Q Consensus       219 ~~~~~~v~~v~~sp-~~-~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~  284 (351)
                      ..-.++|..+.+.. ++ ++.+.|. .++  .|..||=          ..|..+.. .......|..+.+.+
T Consensus        85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG----------s~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG----------SSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC----------CceEeccccccCCCCEEEEEEEEe
Confidence            12246787777643 33 3444443 333  4556652          24656555 223344566666655

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.24  E-value=2.2  Score=36.88  Aligned_cols=119  Identities=13%  Similarity=0.067  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc-cccccccccEEEEEeecC----CCEEEEEeCC--------C
Q 048511          178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ-KVPSGHFAAVMDISWSRS----SDYLLSVSHD--------Q  244 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~----~~~l~s~~~d--------g  244 (351)
                      .+.|+|.|+++.++ +...|.|++++...........+ ............++++|+    +.+.++.+..        .
T Consensus         4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            57899999987655 56699999999332210000001 122334567899999994    3333333321        2


Q ss_pred             cEEEEcCCCcccccc-CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          245 TTRVFAPWKNVASLM-GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      .|.-|.......... ....+..........+.-..|+|.|  |+.+.++.++.+.
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~~~  136 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-TTT
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCCCC
Confidence            344344433310000 0011111122112334467799999  8888887776554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.07  E-value=7.3  Score=33.61  Aligned_cols=125  Identities=13%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             ceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcccCccccccc---------ccccccEEEEEeecCCCEEEEEe
Q 048511          177 GFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVP---------SGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~---------~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      ..-+|++.+++.++++.-.+      ..|+.++........+..-..+         ........+|+++|+|+.|+++.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            44578887788888877777      7888888763221111111111         12345688999999999666554


Q ss_pred             C-----CC--c-------EEEE--cCCCccccccCccce-EEeccccc--cccceeEEEEeeeCCCcEEEE-----ecCC
Q 048511          242 H-----DQ--T-------TRVF--APWKNVASLMGENSW-HEVARPQV--HGHDINCVTIIQGKGNHRFVS-----GADE  297 (351)
Q Consensus       242 ~-----dg--~-------i~vw--d~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s-----~~~d  297 (351)
                      +     |+  .       ++++  |..+....   ...+ ..+.....  ....|+.+.+.+  ++++|+-     .+..
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~---~~~~~y~ld~~~~~~~~~~isd~~al~--d~~lLvLER~~~~~~~  240 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEP---VAEYAYPLDPPPTAPGDNGISDIAALP--DGRLLVLERDFSPGTG  240 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCcc---ceEEEEeCCccccccCCCCceeEEEEC--CCcEEEEEccCCCCcc
Confidence            3     22  1       4454  44331100   0011 11111000  345689999988  7776662     2234


Q ss_pred             CeEEEEecC
Q 048511          298 KVARVFEAP  306 (351)
Q Consensus       298 g~v~vw~~~  306 (351)
                      ..++|+.+.
T Consensus       241 ~~~ri~~v~  249 (326)
T PF13449_consen  241 NYKRIYRVD  249 (326)
T ss_pred             ceEEEEEEE
Confidence            566666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.77  E-value=4.9  Score=31.85  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC---C---cEEEE---cCCCccccc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD---Q---TTRVF---APWKNVASL  258 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g---~i~vw---d~~~~~~~~  258 (351)
                      ..|+.+.....|.+|++.....   +++.++.. -+.|..+.++..|+||+|-=.+   .   .+|+|   +........
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~---~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEEC---PLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCC---ceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            4555557778899999985432   44555543 3789999999999999986432   2   45664   332111111


Q ss_pred             c-----C-----------ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          259 M-----G-----------ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       259 ~-----~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      .     +           ......+..+  -..++.|++-.| -.|++++..  ++++.+|.+..+
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElP--l~~~p~ciaCC~-~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELP--LSEPPLCIACCP-VTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEec--CCCCCCEEEecC-CCCCEEEEc--CCEEEEEEEEEE
Confidence            0     0           0011111111  134578888888 346555544  458899987633

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.65  E-value=2  Score=38.08  Aligned_cols=84  Identities=13%  Similarity=0.046  Sum_probs=51.7

Q ss_pred             EEEeecCCCEEEEEeCCCcEEE---EcCCCccccccCccceEEeccccc-cccceeEEEEeee---------CCCcEEEE
Q 048511          227 DISWSRSSDYLLSVSHDQTTRV---FAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQG---------KGNHRFVS  293 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---------~~~~~l~s  293 (351)
                      .++.+|++++|+.+..++.+.+   |+......... ...+.....+.. .+..|+++.+.|-         .|...++.
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~-~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V   84 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENEN-TYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV   84 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCC-eEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence            4678999999999987776655   54422110000 011111111111 1145888887763         35678999


Q ss_pred             ecCCCeEEEEecCchhhh
Q 048511          294 GADEKVARVFEAPLSFLK  311 (351)
Q Consensus       294 ~~~dg~v~vw~~~~~~~~  311 (351)
                      |-.+|.|++|...|..+.
T Consensus        85 G~ssG~vrfyte~G~LL~  102 (415)
T PF14655_consen   85 GTSSGYVRFYTENGVLLL  102 (415)
T ss_pred             EecccEEEEEeccchHHH
Confidence            999999999999877654

>PLN02153 epithiospecifier protein

Probab=91.26  E-value=9.2  Score=33.18  Aligned_cols=12  Identities=8%  Similarity=0.174  Sum_probs=8.7

Q ss_pred             CeEEEEEcccCc
Q 048511          197 GAFHLWRNVGVD  208 (351)
Q Consensus       197 g~i~~~d~~~~~  208 (351)
                      ..+.+||+.+.+
T Consensus       217 ~~v~~yd~~~~~  228 (341)
T PLN02153        217 NAVQFFDPASGK  228 (341)
T ss_pred             CceEEEEcCCCc
Confidence            458888887754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.21  E-value=9.6  Score=33.29  Aligned_cols=89  Identities=13%  Similarity=0.106  Sum_probs=46.4

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE-EEEcCCCCEEE-EEeeC--C--eEEEEEcc-cCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG-GHWSPDGRSIL-AHGYG--G--AFHLWRNV-GVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~-~~~~d--g--~i~~~d~~-~~~~~~~~  213 (351)
                      |.....||.-+||-+....+. ...+.     .....|.. +.++++++.|+ ++..+  .  .|...++. .+.     
T Consensus       251 l~~s~~~G~~hly~~~~~~~~-~~~lT-----~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----  319 (353)
T PF00930_consen  251 LWISERDGYRHLYLYDLDGGK-PRQLT-----SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----  319 (353)
T ss_dssp             EEEEETTSSEEEEEEETTSSE-EEESS------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----
T ss_pred             EEEEEcCCCcEEEEEcccccc-eeccc-----cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----
Confidence            666667887666666553233 22222     33445644 67788776554 44442  3  44444555 332     


Q ss_pred             cccccccccccEEEEEeecCCCEEEEEe
Q 048511          214 PQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                       ...+......-..+.|||++++++...
T Consensus       320 -~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  320 -PKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             -EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             -eEeccCCCCCceEEEECCCCCEEEEEE
Confidence             223322222226899999999976543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.99  E-value=12  Score=33.88  Aligned_cols=116  Identities=8%  Similarity=0.011  Sum_probs=61.6

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC------
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG------  187 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------  187 (351)
                      -...+.|+|.      +|+++      |++--..|.|++++........+..+..............|+++|+-      
T Consensus        29 L~~Pw~mafl------PDG~l------lVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n   96 (454)
T TIGR03606        29 LNKPWALLWG------PDNQL------WVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGN   96 (454)
T ss_pred             CCCceEEEEc------CCCeE------EEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCC
Confidence            4457899999      78876      66655469999998655222221111100001135678999999874      


Q ss_pred             CEEEEEe----------eCCeEEEEEcccC--cccCcc-ccccc---ccccccEEEEEeecCCCEEEEEeCC
Q 048511          188 RSILAHG----------YGGAFHLWRNVGV--DIDNWQ-PQKVP---SGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       188 ~~l~~~~----------~dg~i~~~d~~~~--~~~~~~-~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      .+|+...          ....|.-|.+...  .....+ .+..+   ..|.  -..|.|.|||.++++.+..
T Consensus        97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606        97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence            3454442          1234545554321  111011 11111   1233  3467899999877755543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.82  E-value=4.3  Score=34.00  Aligned_cols=95  Identities=14%  Similarity=0.342  Sum_probs=58.0

Q ss_pred             CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe------CCCcEEEEcCCCccccccCccceEEecc-
Q 048511          197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS------HDQTTRVFAPWKNVASLMGENSWHEVAR-  269 (351)
Q Consensus       197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-  269 (351)
                      ..|++||..+.+   |  ...-.+-.+.|+++.|..+.++++.|.      ....+..||..+..        |..+.. 
T Consensus        16 ~~lC~yd~~~~q---W--~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--------w~~~~~~   82 (281)
T PF12768_consen   16 PGLCLYDTDNSQ---W--SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--------WSSLGGG   82 (281)
T ss_pred             CEEEEEECCCCE---e--ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--------eeecCCc
Confidence            458999987763   2  222223467899999997767777664      35578889987664        544443 


Q ss_pred             c-cccccceeEEEEeeeCCCcEEEEec-CCCe--EEEEe
Q 048511          270 P-QVHGHDINCVTIIQGKGNHRFVSGA-DEKV--ARVFE  304 (351)
Q Consensus       270 ~-~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~--v~vw~  304 (351)
                      . ..-..+++.+.+...+..++.++|. .++.  |..||
T Consensus        83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence            1 1234668888876533345555554 4444  44554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.76  E-value=9.9  Score=32.68  Aligned_cols=62  Identities=5%  Similarity=-0.013  Sum_probs=32.1

Q ss_pred             eEEeec-----CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCc
Q 048511          141 ILSASM-----DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVD  208 (351)
Q Consensus       141 l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~  208 (351)
                      .+.|+.     ...+..||+.+  .++...-.+   .... .....+...++++.+.|+.++    .+..||+.+.+
T Consensus       127 Yv~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~---p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       127 YVGGGNRNGKPSNKSYLFNLET--QEWFELPDF---PGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             EEEeCcCCCccCceEEEEcCCC--CCeeECCCC---CCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            555553     24578888887  555442211   1101 111122233566777777653    35688887754

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK13684 Ycf48-like protein; Provisional

Probab=90.65  E-value=11  Score=32.77  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=62.7

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ...+..+.+.|++.+++++ ..|.+..- .+.+. ..|..+.  ......++++.+.++++.++.+ ..|.+++=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg-~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQ-TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCC-CeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence            4568899999988766554 44544321 11110 1122222  1234578999999999877665 5676643233333


Q ss_pred             cccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          255 VASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .       .|+.+..... ....+..+.+.+  ++..++ ++.+|.+..
T Consensus       246 ~-------sW~~~~~~~~~~~~~l~~v~~~~--~~~~~~-~G~~G~v~~  284 (334)
T PRK13684        246 E-------SWSKPIIPEITNGYGYLDLAYRT--PGEIWA-GGGNGTLLV  284 (334)
T ss_pred             C-------ccccccCCccccccceeeEEEcC--CCCEEE-EcCCCeEEE
Confidence            3       5665433311 223478888887  566555 446676543

>PLN02153 epithiospecifier protein

Probab=90.35  E-value=11  Score=32.65  Aligned_cols=151  Identities=10%  Similarity=0.180  Sum_probs=70.2

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----------CeEEEEEc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----------GAFHLWRN  204 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------g~i~~~d~  204 (351)
                      ++.|+.+     ..+.+||+++  ..+...-.+.............+..-+++.++.|+.+           ..+.+||+
T Consensus        89 yv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~  166 (341)
T PLN02153         89 YIFGGRDEKREFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI  166 (341)
T ss_pred             EEECCCCCCCccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence            6666643     3577888887  5554322211000011111111222355666666643           24778888


Q ss_pred             ccCcccCcccccccc---cccccEEEEEeecCCCEEEEEeCC-------------CcEEEEcCCCccccccCccceEEec
Q 048511          205 VGVDIDNWQPQKVPS---GHFAAVMDISWSRSSDYLLSVSHD-------------QTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                      .+..   |..+....   ...... +++ .-++++++.++.+             ..+.+||+.+.        .|..+.
T Consensus       167 ~~~~---W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--------~W~~~~  233 (341)
T PLN02153        167 ADGK---WVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--------KWTEVE  233 (341)
T ss_pred             CCCe---EeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCC--------cEEecc
Confidence            7653   33222211   111111 122 2255665555432             35788887665        466654


Q ss_pred             cccc-cc-cceeEEEEeeeCCCcEEEEecCC--------------CeEEEEecCchh
Q 048511          269 RPQV-HG-HDINCVTIIQGKGNHRFVSGADE--------------KVARVFEAPLSF  309 (351)
Q Consensus       269 ~~~~-~~-~~i~~~~~~~~~~~~~l~s~~~d--------------g~v~vw~~~~~~  309 (351)
                      .... .. ....+++ ..  ++.+++.|+..              ..+..+|+....
T Consensus       234 ~~g~~P~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~  287 (341)
T PLN02153        234 TTGAKPSARSVFAHA-VV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV  287 (341)
T ss_pred             ccCCCCCCcceeeeE-EE--CCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence            3110 11 1112222 22  57788888852              146677766443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.33  E-value=11  Score=33.99  Aligned_cols=58  Identities=7%  Similarity=0.059  Sum_probs=36.5

Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-c-cccccEEEEEeecCC
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-S-GHFAAVMDISWSRSS  234 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~-~~~~~v~~v~~sp~~  234 (351)
                      ..+.|+|.|+++.|++--..|.|++++..+........+..+ . ........|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            467899999998776655569999997654422111111111 1 135678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.20  E-value=8.2  Score=34.83  Aligned_cols=139  Identities=11%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-------EEEEEeeCCeEEEEEcccCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-------SILAHGYGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~dg~i~~~d~~~~~~~~~~  213 (351)
                      +..|+.-..++--|++.  |+.+....+     +.. + -+.|.|+.+       .-++|-.+..|.-.|.+....   +
T Consensus       483 ~~dg~~~~kLykmDIEr--GkvveeW~~-----~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---K  550 (776)
T COG5167         483 YLDGGERDKLYKMDIER--GKVVEEWDL-----KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---K  550 (776)
T ss_pred             EecCCCcccceeeeccc--ceeeeEeec-----CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCC---c
Confidence            44455555566667766  776666652     222 2 455666421       234455566666666654321   1


Q ss_pred             cccccccccccEEEEEeec----CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc
Q 048511          214 PQKVPSGHFAAVMDISWSR----SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~sp----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  289 (351)
                       +.. ......++.-.|+.    ...++|.++..|-|++||.-...          ....+.+-+..|..+..+.  +|.
T Consensus       551 -i~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r----------AKtalP~lG~aIk~idvta--~Gk  616 (776)
T COG5167         551 -IKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR----------AKTALPGLGDAIKHIDVTA--NGK  616 (776)
T ss_pred             -eee-eeehhccccccccccccccCceEEEecCCCceeeehhhcch----------hhhcCcccccceeeeEeec--CCc
Confidence             111 11112222222332    34589999999999999965443          2233445667788999988  787


Q ss_pred             EEEEecCCCeEEEEecC
Q 048511          290 RFVSGADEKVARVFEAP  306 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~  306 (351)
                      ++++.+.. .+.+-|++
T Consensus       617 ~ilaTCk~-yllL~d~~  632 (776)
T COG5167         617 HILATCKN-YLLLTDVP  632 (776)
T ss_pred             EEEEeecc-eEEEEecc
Confidence            77666554 66677765

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.15  E-value=5.6  Score=28.86  Aligned_cols=116  Identities=10%  Similarity=0.004  Sum_probs=67.9

Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccC---cccccccccccccEEEEEeec-----CCCEEEEEeCCCcEEEEcC
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN---WQPQKVPSGHFAAVMDISWSR-----SSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~~~~~~~v~~v~~sp-----~~~~l~s~~~dg~i~vwd~  251 (351)
                      .-.|......|++++..|.|.|++........   ...+..+. -...|++++-.+     +...|+.|+ ...+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            34566677789999999999999886542111   11222222 345677776444     335566665 568999999


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEeeeC-CCcEEEEecCCCeEEEEecCch
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK-GNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      .+...         .+.+  .-...++++.+-... ...-++..+.+..|.-||..|+
T Consensus        81 ~~N~d---------~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   81 ENNSD---------LFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             ccCch---------hhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            88762         1111  112346777663311 1234555556667777777654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.08  E-value=9.7  Score=31.46  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe-ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ-PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      .+....|.      +++.+      .+....+...+++. ......... .+..   ......|..+.++|||..++...
T Consensus        67 ~l~~PS~d------~~g~~------W~v~~~~~~~~~~~~~~~g~~~~~-~v~~---~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   67 SLTRPSWD------PDGWV------WTVDDGSGGVRVVRDSASGTGEPV-EVDW---PGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             cccccccc------CCCCE------EEEEcCCCceEEEEecCCCcceeE-Eecc---cccCCceEEEEECCCCcEEEEEE
Confidence            56667788      56665      55555566666664 222112211 1111   11112799999999999887665


Q ss_pred             ---eCCeEEEEEcccCccc---C-cccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          195 ---YGGAFHLWRNVGVDID---N-WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       195 ---~dg~i~~~d~~~~~~~---~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                         .++.|.+--+......   . ..+..........+..+.|.+++.+++.+...
T Consensus       131 ~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  131 EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             ecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence               3577877766422211   0 01112222234578999999999887666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.88  E-value=1.9  Score=37.57  Aligned_cols=73  Identities=15%  Similarity=0.085  Sum_probs=37.3

Q ss_pred             ceEEEEEcCCCCEEEEEe-eC--CeEEEEEcccCcccCccccccccccc-ccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          177 GFYGGHWSPDGRSILAHG-YG--GAFHLWRNVGVDIDNWQPQKVPSGHF-AAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~-~d--g~i~~~d~~~~~~~~~~~~~~~~~~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ..+.=+|.++|+.|+-++ .|  ..+.+.|+.+++      +.++.... .......++|+.+.++-......|+-.|+.
T Consensus        37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred             eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence            334457888997665554 44  467777788864      33333322 222245677888887655556788888888


Q ss_pred             Ccc
Q 048511          253 KNV  255 (351)
Q Consensus       253 ~~~  255 (351)
                      +.+
T Consensus       111 T~e  113 (386)
T PF14583_consen  111 TLE  113 (386)
T ss_dssp             T--
T ss_pred             cCc
Confidence            876

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.72  E-value=0.044  Score=48.04  Aligned_cols=134  Identities=9%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE-EEeeCCeEEEEEcccCcccCcccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-AHGYGGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      ++.++.+..+..||-..   +.....      ..+.....++|+.++..++ .+...+.+.+||+.+..      ..++.
T Consensus        49 lavaca~tiv~~YD~ag---q~~le~------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey------tqqLE  113 (615)
T KOG2247|consen   49 LAVACANTIVIYYDKAG---QVILEL------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY------TQQLE  113 (615)
T ss_pred             eehhhhhhHHHhhhhhc---ceeccc------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh------HHHHh
Confidence            78888888899998764   222111      2234456788888776554 45567899999997753      22222


Q ss_pred             --c-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          220 --G-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       220 --~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                        + |....  +.|++....++.+...|.+.|++....+          .+...-.|...++++++.+   ..+.+.++.
T Consensus       114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR----------~iiv~Gkh~RRgtq~av~l---Ed~vil~dc  178 (615)
T KOG2247|consen  114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSR----------RIIVMGKHQRRGTQIAVTL---EDYVILCDC  178 (615)
T ss_pred             ccCcchHHH--HhhccCCccccccccccceEEEeccchh----------hhhhhcccccceeEEEecc---cceeeecCc
Confidence              1 22222  6899998889989889999999987665          3333334788899999998   556777777


Q ss_pred             CCeEEEEe
Q 048511          297 EKVARVFE  304 (351)
Q Consensus       297 dg~v~vw~  304 (351)
                      |..+.+-.
T Consensus       179 d~~L~v~~  186 (615)
T KOG2247|consen  179 DNTLSVTT  186 (615)
T ss_pred             HHHHHHhh
Confidence            76655444

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.60  E-value=26  Score=35.66  Aligned_cols=140  Identities=12%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-------ee
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-------NT   75 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-------~~   75 (351)
                      +.|+.+.+|+.++++++   ..+.+-+..|..|....|...--.+.=++++..+.--.|.++-+.-.+...       ..
T Consensus        96 TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence            45899999999984443   445555667777776532100000222333333333446665443222111       11


Q ss_pred             ec-ccccceeeeEeeecCCeEEecCCceeEEEEE-----------------------------ecc-ccccceEEEEecC
Q 048511           76 QS-TYRKEVISLASYIEGPVLVAGSSSYQVSVES-----------------------------LLI-GHEDWVYSVQWEP  124 (351)
Q Consensus        76 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------~~~-~h~~~v~~l~~~p  124 (351)
                      .. ..+..+.++....+|+++.+|..+.-..+.-                             .+. .+.++|..+.+. 
T Consensus       173 ~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID-  251 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID-  251 (1311)
T ss_pred             eeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec-
Confidence            11 1144667777788899888876654332211                             122 456678888877 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511          125 PSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                           ..-++      +.+-+..++|.+||+..
T Consensus       252 -----~SR~I------lY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 -----NSRNI------LYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -----cccce------eeeeccCceEEEEEccC
Confidence                 44455      88889999999999986

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.32  E-value=13  Score=31.92  Aligned_cols=99  Identities=16%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             CCCEEEEEee-----CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC----cEEEEcCCCccc
Q 048511          186 DGRSILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ----TTRVFAPWKNVA  256 (351)
Q Consensus       186 ~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg----~i~vwd~~~~~~  256 (351)
                      +++..+.|+.     ...+..||+.+.+   |..+..+.... .....+..-++++.+.|+.++    .+.+||+.+.  
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~--  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQE---WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN--  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCC---eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCC--
Confidence            4566666664     2468888887654   34333332111 111222234567777777653    3457777654  


Q ss_pred             cccCccceEEeccccccccc--e-eEEEEeeeCCCcEEEEecCC
Q 048511          257 SLMGENSWHEVARPQVHGHD--I-NCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~~~~~~~l~s~~~d  297 (351)
                            .|..+........+  . ....... .++.+++.|+.+
T Consensus       197 ------~W~~~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~  233 (323)
T TIGR03548       197 ------QWQKVADPTTDSEPISLLGAASIKI-NESLLLCIGGFN  233 (323)
T ss_pred             ------eeEECCCCCCCCCceeccceeEEEE-CCCEEEEECCcC
Confidence                  47666543110111  1 1111111 157788888876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.94  E-value=16  Score=32.30  Aligned_cols=15  Identities=27%  Similarity=0.749  Sum_probs=11.2

Q ss_pred             CeEEEEeccCCCcceEE
Q 048511          148 KTMMIWQPEKTTGIWMN  164 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~  164 (351)
                      ..+.+||..+  ..+..
T Consensus       189 ~~v~~YD~~t--~~W~~  203 (376)
T PRK14131        189 KEVLSYDPST--NQWKN  203 (376)
T ss_pred             ceEEEEECCC--CeeeE
Confidence            4689999988  66654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.66  E-value=16  Score=32.32  Aligned_cols=41  Identities=20%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      .+.+||..+.        .|..+..+......-.++...   ++.+++.|+.
T Consensus       190 ~v~~YD~~t~--------~W~~~~~~p~~~~~~~a~v~~---~~~iYv~GG~  230 (376)
T PRK14131        190 EVLSYDPSTN--------QWKNAGESPFLGTAGSAVVIK---GNKLWLINGE  230 (376)
T ss_pred             eEEEEECCCC--------eeeECCcCCCCCCCcceEEEE---CCEEEEEeee
Confidence            4778887665        466655432211112233333   4667777764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.64  E-value=14  Score=31.25  Aligned_cols=151  Identities=6%  Similarity=0.035  Sum_probs=0.0

Q ss_pred             eEEEEeccCCCcceEEEEEecccccc-ccceEEEEEcCCCC------EEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHS-ALGFYGGHWSPDGR------SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      .|.+||+.+  .+.++++.+...... .+.+..+.+.....      ..++=...+.|.+||+.++     +..+.+..+
T Consensus        35 KLv~~Dl~t--~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-----~s~Rv~~~~  107 (287)
T PF03022_consen   35 KLVAFDLKT--NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-----KSWRVLHNS  107 (287)
T ss_dssp             EEEEEETTT--TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-----EEEEEETCG
T ss_pred             EEEEEECCC--CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-----cEEEEecCC


Q ss_pred             -------------------cccEEEEEeec---CCCEEEEEeCCCcEEEEcCCCccccccCccceE----Eecccccccc
Q 048511          222 -------------------FAAVMDISWSR---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH----EVARPQVHGH  275 (351)
Q Consensus       222 -------------------~~~v~~v~~sp---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~  275 (351)
                                         ...+.+++.+|   ++++|.-....+. ++|.+.+..........-.    .+..+-..+.
T Consensus       108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~  186 (287)
T PF03022_consen  108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS  186 (287)
T ss_dssp             CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred             cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCC


Q ss_pred             ceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          276 DINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      ....+++++  +|.++.+--....|..|+..+.+
T Consensus       187 ~s~g~~~D~--~G~ly~~~~~~~aI~~w~~~~~~  218 (287)
T PF03022_consen  187 QSDGMAIDP--NGNLYFTDVEQNAIGCWDPDGPY  218 (287)
T ss_dssp             SECEEEEET--TTEEEEEECCCTEEEEEETTTSB
T ss_pred             CCceEEECC--CCcEEEecCCCCeEEEEeCCCCc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.51  E-value=26  Score=34.35  Aligned_cols=122  Identities=11%  Similarity=0.095  Sum_probs=74.6

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe-----ccc---cccccceEEEEEcCCC
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV-----GEL---SHSALGFYGGHWSPDG  187 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~---~~~~~~i~~i~~~~~~  187 (351)
                      +...++|+|     .+...      ||.....|.-.|||+..........+..     +.+   .........+.|.++.
T Consensus       147 ~~aDv~FnP-----~~~~q------~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~  215 (765)
T PF10214_consen  147 PHADVAFNP-----WDQRQ------FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS  215 (765)
T ss_pred             ccceEEecc-----Cccce------EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC
Confidence            566899998     55567      9999999999999992210111011110     111   1112345688998888


Q ss_pred             CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      +.|++++.. .+.++|+++....   ...........|..+.-+|.  ...|+-.  ...|...++...
T Consensus       216 ~~lLv~~r~-~l~~~d~~~~~~~---~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  216 NRLLVCNRS-KLMLIDFESNWQT---EYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             CEEEEEcCC-ceEEEECCCCCcc---chhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence            888877655 5889999876421   11122234567888888886  3333332  256777787764

These proteins are found in fungi.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.35  E-value=11  Score=30.80  Aligned_cols=154  Identities=12%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEccc-CcccCcccccccccccccE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVG-VDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~-~~~~~~~~~~~~~~~~~~v  225 (351)
                      -.+||+.+  ++.. .+.+    .......+-.+-++|+.+.+|+..   ..+++|+... .....|...........+-
T Consensus        48 s~~yD~~t--n~~r-pl~v----~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   48 SVEYDPNT--NTFR-PLTV----QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEecCC--CcEE-eccC----CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            44788887  3322 1111    112223334677899999988752   4588888644 1111111111111233444


Q ss_pred             EEEEeecCCCEEEEEeCCC-cEEEEcCCCccccccCccceEEecccc--ccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          226 MDISWSRSSDYLLSVSHDQ-TTRVFAPWKNVASLMGENSWHEVARPQ--VHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      -.+..-|||+.|+.|+.+. +..+|.-......   ...+..+....  ....--..+...|  +|++|+.+..+..  |
T Consensus       121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~---~~~~~~l~~~~~~~~~nlYP~~~llP--dG~lFi~an~~s~--i  193 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG---PVTLPFLSQTSDTLPNNLYPFVHLLP--DGNLFIFANRGSI--I  193 (243)
T ss_pred             ccceECCCCCEEEEeCcCCCcccccCCccCCCC---ceeeecchhhhccCccccCceEEEcC--CCCEEEEEcCCcE--E
Confidence            5566678999998888764 3455554222100   01111111110  0111122455567  8999999887655  4


Q ss_pred             EecCc-hhhhceeecc
Q 048511          303 FEAPL-SFLKTLNHAT  317 (351)
Q Consensus       303 w~~~~-~~~~~~~~~~  317 (351)
                      ||... +.++.|...-
T Consensus       194 ~d~~~n~v~~~lP~lP  209 (243)
T PF07250_consen  194 YDYKTNTVVRTLPDLP  209 (243)
T ss_pred             EeCCCCeEEeeCCCCC
Confidence            67663 3445554433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=20  Score=32.67  Aligned_cols=33  Identities=18%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      .+...+|+|++.  .| ..      |+.-+.|+.||+||+..
T Consensus       167 tl~Qa~WHP~S~--~D-~h------L~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  167 TLKQAAWHPSSI--LD-PH------LVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             eeeeccccCCcc--CC-ce------EEEEecCcEEEEEecCC
Confidence            466788997653  23 33      77778899999999986

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.16  E-value=19  Score=32.24  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC-----------cEEEEecCCCc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-----------VIRIWKLALRG   70 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-----------~i~iwd~~~~~   70 (351)
                      |+....|+++|+++ ++... ..+..-  .-..+.|.        ++++.|+....+.           .|..|++.+..
T Consensus       146 G~e~~~l~v~Dl~t-g~~l~-d~i~~~--~~~~~~W~--------~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~  213 (414)
T PF02897_consen  146 GSEWYTLRVFDLET-GKFLP-DGIENP--KFSSVSWS--------DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ  213 (414)
T ss_dssp             TSSEEEEEEEETTT-TEEEE-EEEEEE--ESEEEEEC--------TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred             CCceEEEEEEECCC-CcCcC-Cccccc--ccceEEEe--------CCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Confidence            55667899999999 74422 233321  12349999        7766665554332           37788887665


Q ss_pred             cc--ceeecccccc-eeeeEeeecCCeEEec
Q 048511           71 SS--ANTQSTYRKE-VISLASYIEGPVLVAG   98 (351)
Q Consensus        71 ~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~   98 (351)
                      ..  .......... ...+..+.+++++++.
T Consensus       214 ~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  214 SEDELVFEEPDEPFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred             HhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence            43  2222222233 5677888999987763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.97  E-value=0.34  Score=46.06  Aligned_cols=118  Identities=8%  Similarity=0.010  Sum_probs=67.5

Q ss_pred             ccccceEEEEEcC-CCCEEEEEeeCCeEEEEEccc--CcccCcccccccccccccEEEEEeec---CCCEEEEEeCCCcE
Q 048511          173 HSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVG--VDIDNWQPQKVPSGHFAAVMDISWSR---SSDYLLSVSHDQTT  246 (351)
Q Consensus       173 ~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~s~~~dg~i  246 (351)
                      +..+.+-.+.|.. +...+.  -.-|.+.+||+.-  +++...-.+.........+.-|.|.|   +..++..+-.++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            4455666666632 212222  2236788998753  32211111222222233445566665   56677777778888


Q ss_pred             EEEcCCCccccccCccceEEeccccccccceeEEE-----------EeeeCCCcEEEEecCCCeEEEEec
Q 048511          247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT-----------IIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ++.......           ...+..|+..++.++           .+|  ||..|+++..||.+++|.+
T Consensus       208 ~lL~~~ra~-----------~~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  208 RLLNINRAL-----------RSLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eEeeechHH-----------HHHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecCCccceeee
Confidence            887764433           122334655544444           356  8999999999999999985

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.95  E-value=17  Score=31.56  Aligned_cols=132  Identities=12%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC------eEEEEEcccCcccCccccccccc-
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG------AFHLWRNVGVDIDNWQPQKVPSG-  220 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~-  220 (351)
                      ..+.+||..+  ..+...-.+   ......-.+++ ..++++++.|+.+.      .+..|++.... ..|..+..+.. 
T Consensus       168 ~~v~~YDp~t--~~W~~~~~~---p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~-~~W~~~~~m~~~  240 (346)
T TIGR03547       168 KNVLSYDPST--NQWRNLGEN---PFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGGK-LEWNKLPPLPPP  240 (346)
T ss_pred             ceEEEEECCC--CceeECccC---CCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCCC-ceeeecCCCCCC
Confidence            5689999988  666543221   11011111222 23567777776531      24456553221 12333333321 


Q ss_pred             ----ccccEEEEEeecCCCEEEEEeCC----------------------CcEEEEcCCCccccccCccceEEeccccccc
Q 048511          221 ----HFAAVMDISWSRSSDYLLSVSHD----------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHG  274 (351)
Q Consensus       221 ----~~~~v~~v~~sp~~~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                          +.+.....+...++++++.|+.+                      ..+.+||..+.        .|..+..+....
T Consensus       241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--------~W~~~~~lp~~~  312 (346)
T TIGR03547       241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--------KWSKVGKLPQGL  312 (346)
T ss_pred             CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--------cccccCCCCCCc
Confidence                11111111223467777777753                      14667887644        465554432211


Q ss_pred             cceeEEEEeeeCCCcEEEEecCCC
Q 048511          275 HDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       275 ~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                        -...+..-  ++.+++.|+.+.
T Consensus       313 --~~~~~~~~--~~~iyv~GG~~~  332 (346)
T TIGR03547       313 --AYGVSVSW--NNGVLLIGGENS  332 (346)
T ss_pred             --eeeEEEEc--CCEEEEEeccCC
Confidence              11222333  688888888653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.93  E-value=29  Score=34.18  Aligned_cols=106  Identities=15%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--C----CEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--G----RSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~----~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                      ++.++.++.+...++..  +.......    ......|.|+.++|-  +    +.+++|..+..+.+.-......  ..+
T Consensus       502 VvvA~~~~~l~y~~i~~--~~l~e~~~----~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~--~~~  573 (1096)
T KOG1897|consen  502 VVVAGGGLALFYLEIED--GGLREVSH----KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI--LIT  573 (1096)
T ss_pred             EEEecCccEEEEEEeec--cceeeeee----heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc--eee
Confidence            77777777777777765  33221111    133557899999974  2    2788888776655443322110  011


Q ss_pred             cccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          215 QKVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       215 ~~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ...+.+  -+..|.-.++--|..+|.++..||.+.-|-+...
T Consensus       574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN  615 (1096)
T ss_pred             eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence            111111  1223444455556789999999999876655443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=87.84  E-value=18  Score=31.71  Aligned_cols=165  Identities=15%  Similarity=0.157  Sum_probs=72.8

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeec---CCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---DKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      ...+.-+.|+|     .+..+      |+-|..   +.. -|||-+++. +.....+..   ......+..=-|.|+|..
T Consensus       187 ~~wlgH~~fsP-----~dp~l------i~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~---~~~~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  187 TDWLGHVQFSP-----TDPTL------IMFCHEGPWDLVDQRIWTINTD-GSNVKKVHR---RMEGESVGHEFWVPDGST  251 (386)
T ss_dssp             SS-EEEEEEET-----TEEEE------EEEEE-S-TTTSS-SEEEEETT-S---EESS------TTEEEEEEEE-TTSS-
T ss_pred             CccccCcccCC-----CCCCE------EEEeccCCcceeceEEEEEEcC-CCcceeeec---CCCCcccccccccCCCCE
Confidence            44567789998     66666      777654   332 467777653 332222221   112234555678999986


Q ss_pred             EEEEee-----CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC----------------cEEE
Q 048511          190 ILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ----------------TTRV  248 (351)
Q Consensus       190 l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg----------------~i~v  248 (351)
                      |.--+.     +..|.-+|+.+.+.   .   .+. ...+..-+--++||++++-=+.|.                .|++
T Consensus       252 i~y~~~~~~~~~~~i~~~d~~t~~~---~---~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~  324 (386)
T PF14583_consen  252 IWYDSYTPGGQDFWIAGYDPDTGER---R---RLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL  324 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-TTT--E---E---EEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred             EEEEeecCCCCceEEEeeCCCCCCc---e---EEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence            654332     34577777777532   1   111 111233445567888776433332                5667


Q ss_pred             EcCCCcccccc--CccceEEecccccccc-ceeEEEEeeeCCCcEEE-EecCCCeEEEEec
Q 048511          249 FAPWKNVASLM--GENSWHEVARPQVHGH-DINCVTIIQGKGNHRFV-SGADEKVARVFEA  305 (351)
Q Consensus       249 wd~~~~~~~~~--~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~  305 (351)
                      +++..+.....  ....|..   ..++.. .=....|+|  |+++++ ++...|...||-+
T Consensus       325 ~~~~~~~~~~l~~h~~sw~v---~~~~~q~~hPhp~FSP--Dgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  325 FDVEAGRFRKLARHDTSWKV---LDGDRQVTHPHPSFSP--DGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EETTTTEEEEEEE----------BTTBSSTT----EE-T--TSSEEEEEE-TTSS-EEEEE
T ss_pred             eccccCceeeeeeccCccee---ecCCCccCCCCCccCC--CCCEEEEECCCCCCccEEEE
Confidence            77766542100  0001111   111111 014578999  777765 5557887777754

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.76  E-value=15  Score=31.86  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=56.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE-Ee-ccccccccceEEEEEcCC---CCEE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV-TV-GELSHSALGFYGGHWSPD---GRSI  190 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~~i~~i~~~~~---~~~l  190 (351)
                      ..+.|+|.      |++++      |+ +...|.|++++ ..  +.....+ .+ ............++++|+   ..+|
T Consensus         3 ~P~~~a~~------pdG~l------~v-~e~~G~i~~~~-~~--g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~l   66 (331)
T PF07995_consen    3 NPRSMAFL------PDGRL------LV-AERSGRIWVVD-KD--GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYL   66 (331)
T ss_dssp             SEEEEEEE------TTSCE------EE-EETTTEEEEEE-TT--TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EE
T ss_pred             CceEEEEe------CCCcE------EE-EeCCceEEEEe-CC--CcCcceecccccccccccCCcccceeccccCCCCEE
Confidence            35789999      67775      55 56699999999 33  3321111 11 112234557899999994   3444


Q ss_pred             EEEeeC---------CeEEEEEcccC--cccCcc-ccccccc---ccccEEEEEeecCCCEEEEEeCCC
Q 048511          191 LAHGYG---------GAFHLWRNVGV--DIDNWQ-PQKVPSG---HFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       191 ~~~~~d---------g~i~~~d~~~~--~~~~~~-~~~~~~~---~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      ++....         ..|.-|.....  .....+ .+..+..   .......|.|.|||.+.++.+..+
T Consensus        67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            443331         23444444332  100001 1111111   223456699999997766665443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.55  E-value=9.2  Score=34.61  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcc----cCcccCcccc---------cccc--cccccEEEEEeecCC---CE
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNV----GVDIDNWQPQ---------KVPS--GHFAAVMDISWSRSS---DY  236 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~---------~~~~--~~~~~v~~v~~sp~~---~~  236 (351)
                      ...|..+..++.|..++-++.+|.+.++=.+    .+..+..++.         ..+.  ...-.+..++|+|+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            3457788899999999999999976665321    1100000100         0011  112246678999975   55


Q ss_pred             EEEEeCCCcEEEEcCCCcc
Q 048511          237 LLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~  255 (351)
                      |..-+.|..||+||.....
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            7777789999999986654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.44  E-value=16  Score=30.75  Aligned_cols=186  Identities=13%  Similarity=0.117  Sum_probs=94.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEcCCCC---
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWSPDGR---  188 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~---  188 (351)
                      -+.|+++      |.+.+      .++....+...+||....     ....+..+....-.......+.+.|+....   
T Consensus        25 ~WGia~~------p~~~~------WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v   92 (336)
T TIGR03118        25 AWGLSYR------PGGPF------WVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVV   92 (336)
T ss_pred             cceeEec------CCCCE------EEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence            5689999      45555      677777888999998721     112222222111111234567777764332   


Q ss_pred             ---------EEEEEeeCCeEEEEEcccCcccCccccccccc-ccccE-EEEEeec--CCCEEEEEe-CCCcEEEEcCCCc
Q 048511          189 ---------SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAV-MDISWSR--SSDYLLSVS-HDQTTRVFAPWKN  254 (351)
Q Consensus       189 ---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v-~~v~~sp--~~~~l~s~~-~dg~i~vwd~~~~  254 (351)
                               .++.++.||+|.-|...-...........+.. ..+.| ..+++..  .+.+|..+. .+++|.|||-.-.
T Consensus        93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             cCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence                     35677899999999853321100000111211 12233 3455553  356665554 4789999986544


Q ss_pred             cccccCccceEEecccc--------ccccc--eeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeeccc
Q 048511          255 VASLMGENSWHEVARPQ--------VHGHD--INCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHATF  318 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~--------~~~~~--i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~  318 (351)
                      .....  ..+..-..+.        ..+..  |+-..-.+  +.+.=+.|..-|.|-+||..+++++++.....
T Consensus       173 ~~~~~--g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~--~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~  242 (336)
T TIGR03118       173 PPPLP--GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA--DRNDEVAGAGLGYVNVFTLNGQLLRRVASSGR  242 (336)
T ss_pred             cccCC--CCccCCCCCCCCCCcceEEECCeEEEEEEecCC--cccccccCCCcceEEEEcCCCcEEEEeccCCc
Confidence            31100  0000000000        00000  11111122  23334456667899999999999998865443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.18  E-value=20  Score=31.49  Aligned_cols=161  Identities=13%  Similarity=0.091  Sum_probs=88.3

Q ss_pred             CeEEEEeccCCCcceEEEEEecc--ccccccceEEEEE--cC-CCC-EEEEEeeCCeEEEEEcccCcc--cCcccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHW--SP-DGR-SILAHGYGGAFHLWRNVGVDI--DNWQPQKVPS  219 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~--~~-~~~-~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~  219 (351)
                      .+|++|.+....+. +..+.-..  .......++.+|+  ++ ++. ++++...+|.+.-|.+.....  -..++++++.
T Consensus       127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            46899987643233 22221000  0112234777777  33 344 666777889999998853211  1123456665


Q ss_pred             cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCC--CcEEEEec
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKG--NHRFVSGA  295 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~--~~~l~s~~  295 (351)
                      . .+.+..+.......+|+.+-++.-|.-|+.+....     .....+...  ......|-.++.....+  +.+|+|.-
T Consensus       206 ~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~-----~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  206 V-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG-----NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             C-CCcceEEEEecccCCEEEecCccEEEEEecCCCCC-----CcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            3 34788888888888999998888777777653331     111223222  12345678888764222  44556666


Q ss_pred             CCCeEEEEecCc--hhhhceee
Q 048511          296 DEKVARVFEAPL--SFLKTLNH  315 (351)
Q Consensus       296 ~dg~v~vw~~~~--~~~~~~~~  315 (351)
                      .++...||+..+  ..+..|.-
T Consensus       280 G~~sf~Vy~r~~~~~~~g~f~i  301 (381)
T PF02333_consen  280 GDNSFAVYDREGPNAYVGSFRI  301 (381)
T ss_dssp             GGTEEEEEESSTT--EEEEEEE
T ss_pred             CCCeEEEEecCCCCcccceEEe
Confidence            888999999874  44445543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02193 nitrile-specifier protein

Probab=86.65  E-value=25  Score=32.14  Aligned_cols=148  Identities=10%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  210 (351)
                      ++.|+.+     +.+..||+.+  .++.....+...+..... .+++. -++++++.|+.+     ..+..||+.+.+  
T Consensus       232 YvfGG~~~~~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~-h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--  305 (470)
T PLN02193        232 YVFGGRDASRQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSF-HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK--  305 (470)
T ss_pred             EEECCCCCCCCCccEEEEECCC--CEEEEcCcCCCCCCCccc-eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE--
Confidence            5666544     3577888887  666543221110111111 12222 245666666654     346778876653  


Q ss_pred             Cccccccc---ccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccceEEeccccc-c-ccceeEEE
Q 048511          211 NWQPQKVP---SGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSWHEVARPQV-H-GHDINCVT  281 (351)
Q Consensus       211 ~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~  281 (351)
                       |..+...   ......- .++ .-++++++.++.+    ..+.+||+.+.        .|..+..... . .....+++
T Consensus       306 -W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~--------~W~~~~~~g~~P~~R~~~~~~  374 (470)
T PLN02193        306 -WFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQD--------KWTQVETFGVRPSERSVFASA  374 (470)
T ss_pred             -EEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCC--------EEEEeccCCCCCCCcceeEEE
Confidence             2222111   1111111 122 2256777777655    45888988765        4666543210 1 11112222


Q ss_pred             EeeeCCCcEEEEecCCC--------------eEEEEecCch
Q 048511          282 IIQGKGNHRFVSGADEK--------------VARVFEAPLS  308 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~dg--------------~v~vw~~~~~  308 (351)
                       .-  ++.+++.|+.+.              .+.++|+...
T Consensus       375 -~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        375 -AV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             -EE--CCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence             22  577888888532              3677777643

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.07  E-value=36  Score=33.34  Aligned_cols=73  Identities=8%  Similarity=-0.049  Sum_probs=47.8

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc--------cccccc------cccccEEEEEeecCCCEEEEE
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ--------PQKVPS------GHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--------~~~~~~------~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ...|.++....-+..++....||+|.++|..+-+.....        .+..+.      ..-..+.-++|||.+..++.-
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~  338 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI  338 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence            345677777777888999999999999998764211001        011110      011133457899999888888


Q ss_pred             eCCCcEE
Q 048511          241 SHDQTTR  247 (351)
Q Consensus       241 ~~dg~i~  247 (351)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            8888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.87  E-value=25  Score=31.40  Aligned_cols=105  Identities=11%  Similarity=0.110  Sum_probs=67.0

Q ss_pred             cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          113 HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       113 h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ..++|.++.|+      +|.+.      +|.--.+++|.+++....+......   .........|...+|..+ .-+|.
T Consensus        65 d~G~I~SIkFS------lDnki------lAVQR~~~~v~f~nf~~d~~~l~~~---~~ck~k~~~IlGF~W~~s-~e~A~  128 (657)
T KOG2377|consen   65 DKGEIKSIKFS------LDNKI------LAVQRTSKTVDFCNFIPDNSQLEYT---QECKTKNANILGFCWTSS-TEIAF  128 (657)
T ss_pred             CCCceeEEEec------cCcce------EEEEecCceEEEEecCCCchhhHHH---HHhccCcceeEEEEEecC-eeEEE
Confidence            35689999999      78888      9999999999999985422111111   111234456888999876 44554


Q ss_pred             EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL  238 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  238 (351)
                      ....| +-+|-+....    ..++..+.|...|.--.|.++.+.+.
T Consensus       129 i~~~G-~e~y~v~pek----rslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  129 ITDQG-IEFYQVLPEK----RSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             EecCC-eEEEEEchhh----hhhhhhhhcccCccEEEEccccceEe
Confidence            44444 6666654332    23455556677777778888766543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.71  E-value=3.8  Score=38.31  Aligned_cols=72  Identities=13%  Similarity=0.191  Sum_probs=42.1

Q ss_pred             CCCCEEEEEeeCCeEEEEEcccCc--ccCcc-----------ccccc--------ccccccEEEEEeec----CCCEEEE
Q 048511          185 PDGRSILAHGYGGAFHLWRNVGVD--IDNWQ-----------PQKVP--------SGHFAAVMDISWSR----SSDYLLS  239 (351)
Q Consensus       185 ~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~-----------~~~~~--------~~~~~~v~~v~~sp----~~~~l~s  239 (351)
                      ++...++++..||.+.........  ...+.           .+..+        ......+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466788888899988888776411  00000           00000        01123455566666    6789999


Q ss_pred             EeCCCcEEEEcCCCccc
Q 048511          240 VSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       240 ~~~dg~i~vwd~~~~~~  256 (351)
                      .+.|+.+|+||+.++..
T Consensus       236 l~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EETTSEEEEEETTTTCE
T ss_pred             EeCCCeEEEEECCCCeE
Confidence            99999999999999885

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.51  E-value=36  Score=32.83  Aligned_cols=103  Identities=15%  Similarity=0.257  Sum_probs=61.9

Q ss_pred             EEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          180 GGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      .+.|-|+|..+++-..||     .|.++..+.-+...+...   .+....+..++|+-....++.+ ..+.+.+|-..+.
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr---~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy  326 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR---VGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY  326 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc---CCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence            478999999999877554     466665544322111111   1233456667887766655544 5678999987655


Q ss_pred             cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                              .|......+..  .+.-+.|+|..+..++.+++.
T Consensus       327 --------hWYLK~e~~ip--~~s~vkwhpe~~nTl~f~d~~  358 (1243)
T COG5290         327 --------HWYLKVERQIP--GISYVKWHPEEKNTLLFRDGE  358 (1243)
T ss_pred             --------EEEEEEeecCC--CcceeeeccccCcEEEEecCC
Confidence                    46555444333  367789999544445555443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.19  E-value=27  Score=31.10  Aligned_cols=115  Identities=12%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ...+..+.+.+++..++++ .+|.+.. ....+.............  ....+.++.|.+++..+++| .+|.+.... .
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D  355 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D  355 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence            4568899999998877655 5555433 232321100001111111  22358889999888766655 677766653 3


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      .++       .|+.......-...++.+.|.+  +++.++ .+.+|.|.-|
T Consensus       356 ~G~-------tW~~~~~~~~~~~~ly~v~f~~--~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        356 GGK-------SWKRDKGADNIAANLYSVKFFD--DKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             CCc-------ceeEccccCCCCcceeEEEEcC--CCceEE-EeCCcEEEEe
Confidence            343       6766543223334588999876  454444 4577776554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.75  E-value=6  Score=36.99  Aligned_cols=67  Identities=9%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             eEEeecCCeEEEEeccC---CCcceEEEEEeccc-----------------cccccceEEEEEcC----CCCEEEEEeeC
Q 048511          141 ILSASMDKTMMIWQPEK---TTGIWMNVVTVGEL-----------------SHSALGFYGGHWSP----DGRSILAHGYG  196 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~-----------------~~~~~~i~~i~~~~----~~~~l~~~~~d  196 (351)
                      |+.+..||.+.......   ....+..... ...                 .........+++++    +..++++.+.|
T Consensus       161 l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D  239 (547)
T PF11715_consen  161 LVVSLQDGGLLRLKRSSGDSDGSVWSEELF-NDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD  239 (547)
T ss_dssp             EEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred             EEEEECCCCeEEEECCcccCCCCeeEEEEe-CCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence            88888999988888764   2122222111 110                 01123455666666    67899999999


Q ss_pred             CeEEEEEcccCc
Q 048511          197 GAFHLWRNVGVD  208 (351)
Q Consensus       197 g~i~~~d~~~~~  208 (351)
                      +.+++||+.++.
T Consensus       240 ~~LRiW~l~t~~  251 (547)
T PF11715_consen  240 HTLRIWSLETGQ  251 (547)
T ss_dssp             SEEEEEETTTTC
T ss_pred             CeEEEEECCCCe
Confidence            999999999874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.30  E-value=5.5  Score=26.71  Aligned_cols=42  Identities=10%  Similarity=0.054  Sum_probs=26.4

Q ss_pred             EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      +..+|.+.-||..+++      ...+...-...+.|++++|+.+++.+
T Consensus        33 ~~~~GRll~ydp~t~~------~~vl~~~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKE------TTVLLDGLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTE------EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCe------EEEehhCCCccCeEEEcCCCCEEEEE
Confidence            4457889999998864      22222223456889999999987655

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=83.87  E-value=27  Score=30.10  Aligned_cols=121  Identities=17%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEecc----------ccccccceEE
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGE----------LSHSALGFYG  180 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~i~~  180 (351)
                      ..+|++.      +++.+      +++.-.+      ..|..++..   +.....+.+..          ....+..+-.
T Consensus        87 ~Egi~~~------~~g~~------~is~E~~~~~~~~p~I~~~~~~---G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~  151 (326)
T PF13449_consen   87 PEGIAVP------PDGSF------WISSEGGRTGGIPPRIRRFDLD---GRVIRRFPVPAAFLPDANGTSGRRNNRGFEG  151 (326)
T ss_pred             hhHeEEe------cCCCE------EEEeCCccCCCCCCEEEEECCC---CcccceEccccccccccCccccccCCCCeEE
Confidence            4467774      67776      6666556      677777755   34433332111          1234567889


Q ss_pred             EEEcCCCCEEEEEee-----CC---------eEEEEEcccCc--ccCccccccccc-----ccccEEEEEeecCCCEEEE
Q 048511          181 GHWSPDGRSILAHGY-----GG---------AFHLWRNVGVD--IDNWQPQKVPSG-----HFAAVMDISWSRSSDYLLS  239 (351)
Q Consensus       181 i~~~~~~~~l~~~~~-----dg---------~i~~~d~~~~~--~~~~~~~~~~~~-----~~~~v~~v~~sp~~~~l~s  239 (351)
                      ++++|+|+.|+++..     |+         .++++......  ....+..+.+..     ....|..+.+-+++++|+-
T Consensus       152 la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  152 LAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            999999997766543     22         15555543321  001122333332     3567889999999987764


Q ss_pred             Ee-----CCCcEEEEcCC
Q 048511          240 VS-----HDQTTRVFAPW  252 (351)
Q Consensus       240 ~~-----~dg~i~vwd~~  252 (351)
                      =-     ....++|+-+.
T Consensus       232 ER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  232 ERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             EccCCCCccceEEEEEEE
Confidence            32     23445555443

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=83.67  E-value=29  Score=30.18  Aligned_cols=43  Identities=14%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ..+.+||..+.        .|..+..+......-.+++. .  ++.+++.|+.+
T Consensus       168 ~~v~~YDp~t~--------~W~~~~~~p~~~r~~~~~~~-~--~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTN--------QWRNLGENPFLGTAGSAIVH-K--GNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCC--------ceeECccCCCCcCCCceEEE-E--CCEEEEEeeee
Confidence            45778887655        47776544311111122322 3  57777877753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.36  E-value=18  Score=27.78  Aligned_cols=32  Identities=6%  Similarity=0.057  Sum_probs=26.6

Q ss_pred             ceeEEEEee----eCCCcEEEEecCCCeEEEEecCc
Q 048511          276 DINCVTIIQ----GKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       276 ~i~~~~~~~----~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      .+..++|+|    ...+.+|++-..++.|.||...+
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            589999998    23467899999999999999764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.63  E-value=38  Score=30.85  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      ...++++++..|.|++||.-..     .....+.+-...|..+..+.+|+++++.|. ..+.+-|++-
T Consensus       572 esGyIa~as~kGDirLyDRig~-----rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGK-----RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             cCceEEEecCCCceeeehhhcc-----hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence            4468999999999999997654     224455566778999999999998776664 4677777653

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.57  E-value=5.3  Score=21.58  Aligned_cols=28  Identities=14%  Similarity=0.298  Sum_probs=18.1

Q ss_pred             cccEEEEEeecCCCEEEEEe-CC--CcEEEE
Q 048511          222 FAAVMDISWSRSSDYLLSVS-HD--QTTRVF  249 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~-~d--g~i~vw  249 (351)
                      ...-....|+|||+.|+-.+ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34566789999999876554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.63  E-value=6.9  Score=31.97  Aligned_cols=89  Identities=13%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C--CcEEEEcCCCccccccCccceEEecccccccc
Q 048511          199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D--QTTRVFAPWKNVASLMGENSWHEVARPQVHGH  275 (351)
Q Consensus       199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      -.+||+.+++.+   ++..  .......+-.+-+||++|.+|+. +  ..+++++......    ...|.+.........
T Consensus        48 s~~yD~~tn~~r---pl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~----~~~w~e~~~~m~~~R  118 (243)
T PF07250_consen   48 SVEYDPNTNTFR---PLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG----TCDWTESPNDMQSGR  118 (243)
T ss_pred             EEEEecCCCcEE---eccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC----CCCceECcccccCCC
Confidence            358888887532   2211  12223333467789999999875 2  4688888654110    124544432223334


Q ss_pred             ceeEEEEeeeCCCcEEEEecCCC
Q 048511          276 DINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      .-......+  ||+.|+.|+.+.
T Consensus       119 WYpT~~~L~--DG~vlIvGG~~~  139 (243)
T PF07250_consen  119 WYPTATTLP--DGRVLIVGGSNN  139 (243)
T ss_pred             ccccceECC--CCCEEEEeCcCC
Confidence            445555666  899998888773

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-05
2h9l_A	329	Wdr5delta23 Length = 329		2e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		7e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		6e-04

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 22  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG+ +  +       SA+     H++ DG  I++  Y 
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 222

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 65/284 (22%)
Query: 16  TGKFVRACELKGHTDWIRSLDFS-----LPVCTSG------------------------E 46
           TG F R   LKGHTD ++ + F      L  C++                          
Sbjct: 139 TGDFERT--LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 47  AISIL-----LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS 101
           ++SI+     +VS+S+DK I++W++   G    T + +R+ V  +    +G ++ + S+ 
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255
Query: 102 YQVSV--------ESLLIGHEDWVYSVQWEPPS--TAPSDGVSCQQPSS------ILSAS 145
             V V        ++ L  H   V  + W P S  ++ S+    +   S      +LS S
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315
Query: 146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV 205
            DKT+ +W  + +TG+ +  +   +     + F+ G     G+ IL+        +W   
Sbjct: 316 RDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSG-----GKFILSCADDKTLRVW--- 365
Query: 206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
             D  N +  K  + H   V  + + +++ Y+++ S DQT +V+
Sbjct: 366 --DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 22  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T ++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKL 221

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 22  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T ++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKL 221

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 98  GSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157
           G+S+  + +   L GH  WV S+             S  QP+ +LSAS DKT++ W   K
Sbjct: 1   GASNEVLVLRGTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---K 46
Query: 158 TTGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216
            TG      V V      +        + DG   L+  +     LW     D+   +  +
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQ 101
Query: 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVH 273
              GH + VM +   + +  ++S S D+T +V+    + +A+L+G N W    R  P   
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 274 GHDINCVTIIQGKGNHRFV 292
             D + VTII   GN + V
Sbjct: 162 ADD-DSVTIISA-GNDKMV 178

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 43  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 93
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 94  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 141
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 142 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 194
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 243

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 25  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 98  GSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157
           G+S+  + +   L GH  WV S+             S  QP+ +LSAS DKT++ W   K
Sbjct: 1   GASNEVLVLRGTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---K 46
Query: 158 TTGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK 216
            TG      V V      +        + DG   L+  +     LW     D+   +  +
Sbjct: 47  LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQ 101
Query: 217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVH 273
              GH + VM +   + +  ++S S D+T +V+    + +A+L+G N W    R  P   
Sbjct: 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161
Query: 274 GHDINCVTIIQGKGNHRFV 292
             D + VTII   GN + V
Sbjct: 162 ADD-DSVTIISA-GNDKMV 178

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 18  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 68
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 116
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 117 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 169
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 218

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 24  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 74
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 122
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 123 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 175
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 224

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 19  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 69
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 117
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 118 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 170
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 219

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 20  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 70
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 118
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 119 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 171
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 220

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 41  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 91
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 139
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 140 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 192
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 241

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 25  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 15  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 65
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 113
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 114 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 166
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 215

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 19  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 69
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 117
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 118 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 170
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 219

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 36  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 86
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 134
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 135 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 187
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 25  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 75
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 123
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 124 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 176
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L SSS DK+I+IW  A  G    T S ++  + 
Sbjct: 22  LAGHTKAVSSVKFS----PNGE----WLASSSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG+ +  +       SA+     H++ DG  I++  Y 
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLW 202
           G   +W
Sbjct: 174 GLCRIW 179

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 31  WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYI 90
           +IRS+ FS      G+     L + ++D++IRIW +  R      Q  + +++ SL  + 
Sbjct: 125 YIRSVCFS----PDGK----FLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFP 175
Query: 91  EGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA--PSDGVSCQQPSSILSASMDK 148
            G  LV+GS    V +  L  G      S++    + A  P DG        I + S+D+
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG------KYIAAGSLDR 229
Query: 149 TMMIWQPEKTTGIWMNVVTVGELSHSALG----FYGGHWSPDGRSILAHGYGGAFHLWRN 204
            + +W  E  TG    V  +   + S  G     Y   ++ DG+S+++     +  LW N
Sbjct: 230 AVRVWDSE--TGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW-N 284
Query: 205 VGVDIDNWQPQKVPS---------GHFAAVMDISWSRSSDYLLSVSHDQ 244
           +  + +N    K P+         GH   V+ ++ +++ +Y+LS S D+
Sbjct: 285 LQ-NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 54/240 (22%)
Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GHT  + S+ FS     +GE     L +SS DK+I+IW  A  G    T S ++  + 
Sbjct: 22  LAGHTKAVSSVKFS----PNGE----WLAASSADKLIKIWG-AYDGKFEKTISGHKLGIS 72
Query: 85  SLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
            +A   +  +LV+ S    + +  +        L GH ++V+   + P            
Sbjct: 73  DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP------------ 120
Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
           Q + I+S S D+++ IW  +  TG  +  +       SA+     H++ DG  I++  Y 
Sbjct: 121 QSNLIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYD 173
Query: 197 GAFHLWRNVG-------VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           G   +W           +D DN      P   F     + +S +  Y+L+ + D T +++
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDN------PPVSF-----VKFSPNGKYILAATLDNTLKLW 222

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
           L GH  WV S+             S  QP+ +LSAS DKT++ W   K TG      V V
Sbjct: 13  LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
                 +        + DG   L+  +     LW     D+   +  +   GH + VM +
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
              + +  ++S S D+T +V+    + +A+L+G N W    R  P     D + VTII  
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
            GN + V
Sbjct: 173 -GNDKMV 178

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
           L GH  WV S+             S  QP+ +LSAS DKT++ W   K TG      V V
Sbjct: 7   LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 52
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
                 +        + DG   L+  +     LW     D+   +  +   GH + VM +
Sbjct: 53  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 107
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
              + +  ++S S D+T +V+    + +A+L+G N W    R  P     D + VTII  
Sbjct: 108 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 166
Query: 286 KGNHRFV 292
            GN + V
Sbjct: 167 -GNDKMV 172

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
           L GH  WV S+             S  QP+ +LSAS DKT++ W   K TG      V V
Sbjct: 13  LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
                 +        + DG   L+  +     LW     D+   +  +   GH + VM +
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVMSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
              + +  ++S S D+T +V+    + +A+L+G N W    R  P     D + VTII  
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
            GN + V
Sbjct: 173 -GNDKMV 178

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 126/316 (39%), Gaps = 60/316 (18%)
Query: 5   DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW 64
           D  + L+   R G+ ++   L GH+  +  + FS      G+ I+    S+S DK +++W
Sbjct: 160 DKTVKLWN--RNGQLLQT--LTGHSSSVWGVAFS----PDGQTIA----SASDDKTVKLW 207
Query: 65  KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWV 117
                G    T + +   V  +A   +G  + + S    V + +        L GH   V
Sbjct: 208 NR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 265
Query: 118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG 177
             V + P      DG       +I SAS DKT+ +W      G  +  +T     HS+  
Sbjct: 266 NGVAFRP------DG------QTIASASDDKTVKLWNRN---GQLLQTLT----GHSS-S 305
Query: 178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL 237
            +G  +SPDG++I +        LW   G      Q  +  +GH ++V  +++S     +
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNG------QHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE 297
            S S D+T ++   W     L+            + GH  +   +          S +D+
Sbjct: 360 ASASDDKTVKL---WNRNGQLL----------QTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 298 KVARVFEAPLSFLKTL 313
           K  +++      L+TL
Sbjct: 407 KTVKLWNRNGQLLQTL 422

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 34/216 (15%)
Query: 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ---PEKTT 159
           Q+++   L GH  WV  +   P           Q P  ILSAS DKT+++W+    E   
Sbjct: 27  QMTLRGTLKGHNGWVTQIATTP-----------QFPDMILSASRDKTIIMWKLTRDETNY 75
Query: 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219
           GI    +       S +       S DG+  L+  + G   LW     D+      +   
Sbjct: 76  GIPQRALRGHSHFVSDVVI-----SSDGQFALSGSWDGTLRLW-----DLTTGTTTRRFV 125
Query: 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279
           GH   V+ +++S  +  ++S S D+T ++   W  +             + + H   ++C
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKL---WNTLGVC------KYTVQDESHSEWVSC 176
Query: 280 VTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315
           V       N   VS   +K+ +V+      LKT NH
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NH 211

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 34/216 (15%)
Query: 103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ---PEKTT 159
           Q+++   L GH  WV  +   P           Q P  ILSAS DKT+++W+    E   
Sbjct: 4   QMTLRGTLKGHNGWVTQIATTP-----------QFPDMILSASRDKTIIMWKLTRDETNY 52
Query: 160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS 219
           GI    +       S +       S DG+  L+  + G   LW     D+      +   
Sbjct: 53  GIPQRALRGHSHFVSDVVI-----SSDGQFALSGSWDGTLRLW-----DLTTGTTTRRFV 102
Query: 220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC 279
           GH   V+ +++S  +  ++S S D+T ++   W  +             + + H   ++C
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKL---WNTLGVC------KYTVQDESHSEWVSC 153
Query: 280 VTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNH 315
           V       N   VS   +K+ +V+      LKT NH
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-NH 188

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 14  QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA 73
           Q+ G  VR+   KGH+  ++        CT   A     +S+S DK +R+W +A  G + 
Sbjct: 52  QKFGVPVRS--FKGHSHIVQD-------CTL-TADGAYALSASWDKTLRLWDVA-TGETY 100
Query: 74  NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPS 126
                ++ +V S+    +   +++GS    + V ++       L+GH DWV  V+  P  
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNE 160
Query: 127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD 186
            A  D V+      I+SA  DK +  W   +        +    + H++        SPD
Sbjct: 161 KADDDSVT------IISAGNDKXVKAWNLNQFQ------IEADFIGHNS-NINTLTASPD 207
Query: 187 GRSILAHGYGGAFHLW 202
           G  I + G  G   LW
Sbjct: 208 GTLIASAGKDGEIXLW 223

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 25/187 (13%)
Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV-VTV 168
           L GH  WV S+             S  QP+ +LSAS DKT++ W   K TG      V V
Sbjct: 13  LEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISW---KLTGDDQKFGVPV 58
Query: 169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI 228
                 +        + DG   L+  +     LW     D+   +  +   GH + V  +
Sbjct: 59  RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW-----DVATGETYQRFVGHKSDVXSV 113
Query: 229 SWSRSSDYLLSVSHDQTTRVFA-PWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQG 285
              + +  ++S S D+T +V+    + +A+L+G N W    R  P     D + VTII  
Sbjct: 114 DIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD-DSVTIISA 172
Query: 286 KGNHRFV 292
            GN + V
Sbjct: 173 -GNDKXV 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.42
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.41
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.39
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.14
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.08
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.82
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.8
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.79
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.68
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.65
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.65
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.64
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.6
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.56
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.5
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.47
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.43
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.42
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.38
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.33
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.3
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.29
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.27
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.17
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.16
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.15
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.14
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.12
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.1
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.06
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.05
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.02
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.95
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.88
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.71
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.7
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.65
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.57
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.44
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.37
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.36
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.34
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.29
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.28
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.09
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.07
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.89
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.82
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.55
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.5
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.42
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.24
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.12
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.12
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.81
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.77
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.52
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.56
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.51
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.41
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.78
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.86
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.75
3ott_A	758	Two-component system sensor histidine kinase; beta	91.53
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	89.95
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.28
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.91
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.18
3ott_A	758	Two-component system sensor histidine kinase; beta	82.17
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.47

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=308.95  Aligned_cols=260  Identities=19%  Similarity=0.282  Sum_probs=231.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.|++|+||++.. ++......+.+|...|.+++|+        +++.++++++.|++|++||+.+++...... ...
T Consensus        53 tgs~D~~v~vW~~~~-~~~~~~~~l~gh~~~v~~~~~~--------~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~  122 (321)
T 3ow8_A           53 TGSLDDLVKVWKWRD-ERLDLQWSLEGHQLGVVSVDIS--------HTLPIAASSSLDAHIRLWDLENGKQIKSID-AGP  122 (321)
T ss_dssp             EEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCT
T ss_pred             EEcCCCCEEEEECCC-CCeeeeeeeccCCCCEEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCCEEEEEe-CCC
Confidence            578999999999988 7666677899999999999999        889999999999999999999887665443 234


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+..++|+|+++.++++..++.+.++.        .+..|...|.+++|+      +++++      |++|+.|+.|++
T Consensus       123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s------pdg~~------lasg~~dg~i~i  190 (321)
T 3ow8_A          123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS------PDGKY------LASGAIDGIINI  190 (321)
T ss_dssp             TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC------CCCCE------EEEEcCCCeEEE
Confidence            5677899999999999999999887765        355678889999999      78999      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||+++  ++.+..+.     .|...|.+++|+|++++|++++.|+.|++||+++.     .+...+.+|...|.+++|+|
T Consensus       191 wd~~~--~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          191 FDIAT--GKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-----NLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EETTT--TEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECT
T ss_pred             EECCC--CcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-----ceeEEEcCCCCceEEEEECC
Confidence            99998  77666655     78889999999999999999999999999999886     45778889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++++|++++.|++|++||+.++.          .+..+..|...|++++|+|  ++.+|++++.|+.|+|||.+
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~----------~~~~~~~h~~~v~~v~~s~--~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRT----------CVHTFFDHQDQVWGVKYNG--NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTE----------EEEEECCCSSCEEEEEECT--TSSEEEEEETTCCEEEEECC
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCE----------EEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999998876          5666778999999999999  89999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-43  Score=310.51  Aligned_cols=257  Identities=21%  Similarity=0.316  Sum_probs=227.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|+|||+.+ ++  ....+.+|.+.|++++|+        +++++|++|+.|++|++||+.+.+.+..+ ..+.
T Consensus       125 s~s~Dg~i~vwd~~~-~~--~~~~l~~h~~~V~~v~~~--------~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~  192 (410)
T 1vyh_C          125 SASEDATIKVWDYET-GD--FERTLKGHTDSVQDISFD--------HSGKLLASCSADMTIKLWDFQGFECIRTM-HGHD  192 (410)
T ss_dssp             EEESSSCEEEEETTT-CC--CCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCCCEEETTSSCEEECC-CCCS
T ss_pred             EEeCCCeEEEEECCC-Cc--EEEEEeccCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCC
Confidence            478999999999998 63  456889999999999999        88999999999999999999887655443 3456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++.|+|++..+++++.++.+++|.        .+.+|...|.++.++      +++.+      |++|+.|++|++
T Consensus       193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~------~~g~~------l~s~s~D~~v~v  260 (410)
T 1vyh_C          193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN------QDGTL------IASCSNDQTVRV  260 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC------CCCCE------EEEEcCCCeEEE
Confidence            6899999999999999999999988765        467899999999999      78899      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCC--------------------CCEEEEEeeCCeEEEEEcccCcccCc
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--------------------GRSILAHGYGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~  212 (351)
                      ||+++  +.....+.     .|...|.+++|+|+                    +.+|++++.|+.|++||++++     
T Consensus       261 wd~~~--~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-----  328 (410)
T 1vyh_C          261 WVVAT--KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----  328 (410)
T ss_dssp             EETTT--CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----
T ss_pred             EECCC--CceeeEec-----CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-----
Confidence            99998  66666554     78889999999996                    678999999999999999987     


Q ss_pred             ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511          213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                      .++..+.+|...|++++|+|++++|++++.|+.|++||+.+++          .+..+.+|...|++++|+|  ++.+|+
T Consensus       329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~----------~~~~~~~h~~~v~~l~~~~--~~~~l~  396 (410)
T 1vyh_C          329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----------CMKTLNAHEHFVTSLDFHK--TAPYVV  396 (410)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----------CCEEEECCSSCEEEEEECS--SSSCEE
T ss_pred             ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------eEEEEcCCCCcEEEEEEcC--CCCEEE
Confidence            5678888999999999999999999999999999999998776          4455668999999999999  899999


Q ss_pred             EecCCCeEEEEec
Q 048511          293 SGADEKVARVFEA  305 (351)
Q Consensus       293 s~~~dg~v~vw~~  305 (351)
                      +|+.|+.|++|++
T Consensus       397 sgs~D~~i~vW~~  409 (410)
T 1vyh_C          397 TGSVDQTVKVWEC  409 (410)
T ss_dssp             EEETTSEEEEEC-
T ss_pred             EEeCCCcEEEEeC
Confidence            9999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-41  Score=291.13  Aligned_cols=256  Identities=13%  Similarity=0.220  Sum_probs=217.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc---cceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS---SANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~~~~   77 (351)
                      +|+.||+|+|||..+ +  ..+..+..|...|.+++|+        +++++|++++.|+.|++|++.+...   ......
T Consensus        72 s~s~Dg~v~iWd~~~-~--~~~~~~~~~~~~v~~~~~s--------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~  140 (340)
T 1got_B           72 SASQDGKLIIWDSYT-T--NKVHAIPLRSSWVMTCAYA--------PSGNYVACGGLDNICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             EEETTTEEEEEETTT-C--CEEEEEECSSSCEEEEEEC--------TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEE
T ss_pred             EEeCCCcEEEEECCC-C--CcceEeecCCccEEEEEEC--------CCCCEEEEEeCCCeEEEEECccCCCcceeEEEec
Confidence            478999999999988 6  3566788999999999999        8899999999999999999987542   222233


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .+...+.++.|++++. +++++.++.+++|.        .+.+|...|.+++|+      +++.+      |++|+.|+.
T Consensus       141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~sg~~d~~  207 (340)
T 1got_B          141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA------PDTRL------FVSGACDAS  207 (340)
T ss_dssp             CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSC
T ss_pred             CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC------CCCCE------EEEEeCCCc
Confidence            4556778888888776 67777777776664        467899999999999      78888      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMD  227 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~  227 (351)
                      |++||+++  +.....+.     .|...|.+++|+|++++|++++.|+.|++||+++.+     .+..+.  .+...|.+
T Consensus       208 v~~wd~~~--~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          208 AKLWDVRE--GMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ-----ELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEEETTT--CSEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCTTCCSCEEE
T ss_pred             EEEEECCC--CeeEEEEc-----CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-----EEEEEccCCcccceEE
Confidence            99999998  76666665     788899999999999999999999999999998763     233332  33457999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      ++|+|++++|++|+.|+.|++||+.+..          .+..+.+|...|++++|+|  ++.+|++|+.|+.|+|||
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~s~--dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKAD----------RAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCc----------EeeEeecCCCcEEEEEEcC--CCCEEEEEcCCccEEecC
Confidence            9999999999999999999999998776          5556678999999999999  999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=285.94  Aligned_cols=276  Identities=23%  Similarity=0.330  Sum_probs=219.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEe-eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACE-LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~   78 (351)
                      +|+.|++|+|||++. ++...... ..+|.+.|++++|+        +++++|++++.|++|++|++..... .......
T Consensus        33 s~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~s--------p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  103 (345)
T 3fm0_A           33 SCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWS--------PCGNYLASASFDATTCIWKKNQDDFECVTTLEG  103 (345)
T ss_dssp             EEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEECCC-EEEEEEECC
T ss_pred             EEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEEC--------CCCCEEEEEECCCcEEEEEccCCCeEEEEEccC
Confidence            478899999999998 65443333 46899999999999        8899999999999999999987643 2233445


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      +...+.+++|+|+++.|++++.++.+.+|.           .+.+|...|.+++|+      +++.+      |++++.|
T Consensus       104 h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~------p~~~~------l~s~s~d  171 (345)
T 3fm0_A          104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH------PSQEL------LASASYD  171 (345)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC------SSSSC------EEEEETT
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC------CCCCE------EEEEeCC
Confidence            667899999999999999999998887764           356789999999999      78888      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc----------Ccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID----------NWQPQKV  217 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------~~~~~~~  217 (351)
                      +.|++||.+.  +.......   +.+|...|.+++|+|++++|++++.|++|++||.......          .+.++..
T Consensus       172 ~~i~~w~~~~--~~~~~~~~---~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T 3fm0_A          172 DTVKLYREEE--DDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT  246 (345)
T ss_dssp             SCEEEEEEET--TEEEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred             CcEEEEEecC--CCEEEEEE---ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence            9999999987  44332222   2378899999999999999999999999999997543211          0112233


Q ss_pred             ccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE-EeccccccccceeEEEEeeeCCC-cEEEEe
Q 048511          218 PSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH-EVARPQVHGHDINCVTIIQGKGN-HRFVSG  294 (351)
Q Consensus       218 ~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~  294 (351)
                      +.+ |...|.+++|+|++..|++++.|+.|++|+........  ...+. ......+|...|++++|+|  ++ .+||+|
T Consensus       247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~laS~  322 (345)
T 3fm0_A          247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ--QPTFSLTAHLHQAHSQDVNCVAWNP--KEPGLLASC  322 (345)
T ss_dssp             ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT--SCCEEEEEEETTSSSSCEEEEEECS--SSTTEEEEE
T ss_pred             ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc--eeeEEEEeeecccccCcEeEeEEeC--CCceEEEEc
Confidence            333 78899999999999999999999999999987653211  01111 1233457889999999999  65 599999


Q ss_pred             cCCCeEEEEecC
Q 048511          295 ADEKVARVFEAP  306 (351)
Q Consensus       295 ~~dg~v~vw~~~  306 (351)
                      +.||.|++|++.
T Consensus       323 s~Dg~v~~W~~~  334 (345)
T 3fm0_A          323 SDDGEVAFWKYQ  334 (345)
T ss_dssp             ETTSCEEEEEEC
T ss_pred             CCCCcEEEEEec
Confidence            999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=286.56  Aligned_cols=228  Identities=18%  Similarity=0.164  Sum_probs=188.9

Q ss_pred             CCCCCceEEEEEccCCCceE--EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFV--RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      +|+.||+|+|||+++ ++..  ....+.+|.+.|++|+|+        +++++|++|+.|++|++||+.+++.+      
T Consensus        98 ~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~s--------pdg~~l~sgs~d~~i~iwd~~~~~~~------  162 (344)
T 4gqb_B           98 VASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVL--------SSGTQAVSGSKDICIKVWDLAQQVVL------  162 (344)
T ss_dssp             EEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTTEEE------
T ss_pred             EEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEEC--------CCCCEEEEEeCCCeEEEEECCCCcEE------
Confidence            478899999999998 5432  234566999999999999        88999999999999999999876432      


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccC
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                                   ..+.+|.+.|.+++|+|      ++ .+      |++++.|++|++||+++
T Consensus       163 -----------------------------~~~~~h~~~V~~~~~~~------~~~~~------l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          163 -----------------------------SSYRAHAAQVTCVAASP------HKDSV------FLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             -----------------------------EEECCCSSCEEEEEECS------SCTTE------EEEEETTSCEEEEETTS
T ss_pred             -----------------------------EEEcCcCCceEEEEecC------CCCCc------eeeeccccccccccccc
Confidence                                         45678999999999994      54 46      89999999999999998


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-C
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-D  235 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~  235 (351)
                        ++....+.   ...+...+.+++|+|+ +++|++|+.|+.|++||++++     +++..+.+|...|++++|+|++ +
T Consensus       202 --~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          202 --PKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-----SCVLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             --SSCEEECC-------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCEEEEEECSSSSC
T ss_pred             --cceeeeee---cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEEccCCCe
Confidence              65555443   1245567899999995 568899999999999999987     5688899999999999999998 5


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCc
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~  307 (351)
                      +|++|+.|++|+|||+.+++          . ..+.+|...|++++|+|  ++ .+|++++.|+.|++|+++.
T Consensus       272 ~lasgs~D~~i~vwd~~~~~----------~-~~~~~H~~~V~~v~~sp--~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSLSE----------L-FRSQAHRDFVRDATWSP--LNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             CEEEEETTSCEEEECTTCCE----------E-EEECCCSSCEEEEEECS--SSTTEEEEEETTSCEEEEECCC
T ss_pred             EEEEEeCCCeEEEEECCCCc----------E-EEEcCCCCCEEEEEEeC--CCCeEEEEEcCCCeEEEEECCC
Confidence            79999999999999998765          2 23568999999999999  55 5778999999999999874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-40  Score=280.91  Aligned_cols=254  Identities=15%  Similarity=0.209  Sum_probs=215.2

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ....++.+|.+.|++++|+        |++++|++++.||+|++||+.++.....+. .+...+.++.|+++++.+++++
T Consensus         4 ~~~~~~~~h~~~V~~~~fs--------p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFH--------PTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             CCEEEEEEECSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE
T ss_pred             eeEEeecCCCCceEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEEC
Confidence            3456889999999999999        889999999999999999999876654443 3456788999999999999999


Q ss_pred             CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce-EEEEEecc
Q 048511          100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW-MNVVTVGE  170 (351)
Q Consensus       100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~  170 (351)
                      .++.+++|.        .+.+|.+.|.+++|+      +++.+      |++|+.|++|++||++.  +.. ...+.   
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~sgs~D~~v~lWd~~~--~~~~~~~~~---  137 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH------PTKPY------VLSGSDDLTVKLWNWEN--NWALEQTFE---  137 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEEGGG--TTEEEEEEC---
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc------CCCCE------EEEECCCCeEEEEECCC--Ccchhhhhc---
Confidence            999988765        467899999999999      78888      99999999999999987  432 33333   


Q ss_pred             ccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec--CCCEEEEEeCCCcEE
Q 048511          171 LSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR--SSDYLLSVSHDQTTR  247 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~s~~~dg~i~  247 (351)
                        .|...|.+++|+| ++..|++++.|+.|++||++...    .......+|...+..++|+|  ++.+|++++.|+.|+
T Consensus       138 --~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (304)
T ss_dssp             --CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred             --ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence              7888999999999 67899999999999999998763    12222345667899999987  778999999999999


Q ss_pred             EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +||+++++          .+..+.+|...|++++|+|  ++.+|++|+.||.|++||+. ++.++++..+.
T Consensus       212 iWd~~~~~----------~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~  270 (304)
T 2ynn_A          212 IWDYQTKS----------CVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (304)
T ss_dssp             EEETTTTE----------EEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred             EEeCCCCc----------cceeeCCCCCCEEEEEECC--CCCEEEEEcCCCeEEEEECCCCceeeeccCCC
Confidence            99998876          5666778999999999999  89999999999999999987 77777776554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.7e-40  Score=277.91  Aligned_cols=259  Identities=17%  Similarity=0.213  Sum_probs=219.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+++ +  ..+..+.+|..+|.+++|+        +++++|++|+.|++|++||+.+++...... .+.
T Consensus        30 s~~~dg~v~lWd~~~-~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~   97 (304)
T 2ynn_A           30 TTLYSGRVELWNYET-Q--VEVRSIQVTETPVRAGKFI--------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHP   97 (304)
T ss_dssp             EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred             EEcCCCcEEEEECCC-C--ceeEEeeccCCcEEEEEEe--------CCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCC
Confidence            478899999999998 6  5677889999999999999        889999999999999999999887665443 456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      ..+.+++|+|++.++++++.++.+++|.         .+.+|...|.+++|+|     .++.+      |++|+.|++|+
T Consensus        98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~~------l~sgs~D~~v~  166 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-----KDPST------FASGCLDRTVK  166 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT-----TCTTE------EEEEETTSEEE
T ss_pred             CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC-----CCCCE------EEEEeCCCeEE
Confidence            7899999999999999999999987765         3668999999999995     46778      99999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      +||++.  ......+.    ..+...+..++|+|  ++.+|++++.|+.|++||++++     .++..+.+|...|.+++
T Consensus       167 iwd~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          167 VWSLGQ--STPNFTLT----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEETTC--SSCSEEEE----CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEE
T ss_pred             EEECCC--CCccceec----cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-----ccceeeCCCCCCEEEEE
Confidence            999987  44333333    24556788999987  6789999999999999999987     56888999999999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc--EEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH--RFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~dg~v~vw~~~  306 (351)
                      |+|++++|++++.||+|++||+.+.+          ....+..|...+++++|+|  ++.  ++++|++|| +.+|++.
T Consensus       236 ~~p~~~~l~s~s~Dg~i~iWd~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          236 FHPTLPIIISGSEDGTLKIWNSSTYK----------VEKTLNVGLERSWCIATHP--TGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCC----------EEEEECCSSSSEEEEEECT--TCGGGCEEEEETTE-EEEEECC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCc----------eeeeccCCCccEEEEEECC--CCCceEEEEecCCc-eEEEEec
Confidence            99999999999999999999998876          5556667888899999998  443  577777666 5667654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-40  Score=283.71  Aligned_cols=271  Identities=21%  Similarity=0.320  Sum_probs=207.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEee-ee-cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc------cc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACEL-KG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG------SS   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~------~~   72 (351)
                      +|+.|++|++||+.. +.......+ .+ |.+.|++++|+        |++++|++++.|++|++||+....      ..
T Consensus        29 s~~~D~~i~lw~~~~-~~~~~~~~~~~~~h~~~v~~v~~s--------p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~   99 (330)
T 2hes_X           29 TGSTDRKIKLVSVKY-DDFTLIDVLDETAHKKAIRSVAWR--------PHTSLLAAGSFDSTVSIWAKEESADRTFEMDL   99 (330)
T ss_dssp             EEESSSCEEEEECSS-SCCEEEEEECTTCCCSCEEEEEEC--------TTSSEEEEEETTSCEEEEEC-------CCCEE
T ss_pred             EEcCCCEEEEEEecC-CCeEEEEEEecCCccCCEEEEEEC--------CCCCEEEEEeCCCcEEEEEcccCcCcccccee
Confidence            478999999999987 544555556 34 99999999999        889999999999999999986432      11


Q ss_pred             ceeecccccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           73 ANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                      ......+...+.+++|+|++++|++++.++.+++|..            +.+|...|.+++|+      |++.+      
T Consensus       100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~------p~~~~------  167 (330)
T 2hes_X          100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH------PSEAL------  167 (330)
T ss_dssp             EEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC------SSSSE------
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC------CCCCE------
Confidence            2233455678999999999999999999988877653            56799999999999      78888      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC--CCEEEEEeeCCeEEEEEcccCccc---Ccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--GRSILAHGYGGAFHLWRNVGVDID---NWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~  215 (351)
                      |++++.|++|++||.......++..+.     +|...|.+++|+|+  +..|++++.|++|++||++.....   .+.+.
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            999999999999999872224444443     88899999999998  678999999999999999764211   01223


Q ss_pred             ccccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe-cccccccc-ceeEEEEeeeCCCcEEE
Q 048511          216 KVPSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-ARPQVHGH-DINCVTIIQGKGNHRFV  292 (351)
Q Consensus       216 ~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~~~~~~~~~l~  292 (351)
                      ..+.. |...|.+++|++++ +|++++.||.|+|||...+.        +..+ .....|.. .|++++|+|..++.+|+
T Consensus       243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la  313 (330)
T 2hes_X          243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE--------WKVFAKRALCHGVYEINVVKWLELNGKTILA  313 (330)
T ss_dssp             EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE--------EEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred             eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc--------eEEEeccccccccceEEEEEEecCCCceEEE
Confidence            34444 88999999999765 79999999999999986653        1122 22346766 79999999833578999


Q ss_pred             EecCCCeEEEEecC
Q 048511          293 SGADEKVARVFEAP  306 (351)
Q Consensus       293 s~~~dg~v~vw~~~  306 (351)
                      +|+.||.|+||+++
T Consensus       314 s~s~Dg~v~~W~~~  327 (330)
T 2hes_X          314 TGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEETTSEEEEEEC-
T ss_pred             EecCCCcEEEEEec
Confidence            99999999999976

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=281.55  Aligned_cols=259  Identities=14%  Similarity=0.206  Sum_probs=219.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-----ccee
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-----SANT   75 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-----~~~~   75 (351)
                      +|+.||+|+|||..+ ++  ....+..|...|.+++|+        |++.+|++++.|+.+++|++.....     ....
T Consensus        81 s~s~Dg~v~vWd~~~-~~--~~~~~~~~~~~v~~~~~s--------p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~  149 (354)
T 2pbi_B           81 SSSQDGKVIVWDSFT-TN--KEHAVTMPCTWVMACAYA--------PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS  149 (354)
T ss_dssp             EEETTSEEEEEETTT-CC--EEEEEECSSSCCCEEEEC--------TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEE
T ss_pred             EEeCCCeEEEEECCC-CC--cceEEecCCCCEEEEEEC--------CCCCEEEEeeCCCCEEEEEEecccccccccccee
Confidence            578999999999988 53  455777899999999999        8899999999999999999865421     1222


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+...+.++.|++++..+++++.++.+++|.        .+.+|...|.+++|+|.    +++++      |++|+.|
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~g~~------l~sgs~D  219 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS----ETGNT------FVSGGCD  219 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC----SSCCE------EEEEETT
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC----CCCCE------EEEEeCC
Confidence            234566788999999999999999999988765        46789999999999852    25678      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAV  225 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v  225 (351)
                      +.|++||+++  +..+..+.     .|...|.+++|+|++.+|++++.|++|++||++...     .+..+.  .+...+
T Consensus       220 g~v~~wd~~~--~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          220 KKAMVWDMRS--GQCVQAFE-----THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-----EVAIYSKESIIFGA  287 (354)
T ss_dssp             SCEEEEETTT--CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCTTCCSCE
T ss_pred             CeEEEEECCC--CcEEEEec-----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCCCcccce
Confidence            9999999998  77766665     788899999999999999999999999999998763     232222  234578


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      .+++|+|++++|++++.|+.|++||+.++.          .+..+.+|...|++++|+|  ++.+|++|+.|+.|+||+
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----------~~~~l~~h~~~v~~l~~sp--dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGS----------RVSILFGHENRVSTLRVSP--DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCS----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTSEEEEEC
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCc----------eEEEEECCCCcEEEEEECC--CCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999998876          5556678999999999999  999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-40  Score=290.07  Aligned_cols=265  Identities=14%  Similarity=0.193  Sum_probs=217.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc------cce
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS------SAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~   74 (351)
                      +|+.||+|+|||+.+ +  .....+.+|...|.+++|+        +++++|++|+.|+.|++|++.....      ...
T Consensus        83 s~s~D~~v~iWd~~~-~--~~~~~~~~h~~~v~~~~~s--------~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           83 SASQDGRLIVWNALT-S--QKTHAIKLHCPWVMECAFA--------PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EEETTSEEEEEETTT-T--EEEEEEECCCTTCCCCEEC--------TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEeCCCeEEEEECCC-C--ccceEEecCCCCEEEEEEC--------CCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            578999999999988 6  5667889999999999999        8899999999999999999975321      222


Q ss_pred             eecccccceeeeEeeecC-CeEEecCCceeEEEEEe--------c-----cccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           75 TQSTYRKEVISLASYIEG-PVLVAGSSSYQVSVESL--------L-----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~--------~-----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                      ....+...+.++.|.|++ ..+++++.++.+++|..        +     .+|...|.++.|+|     .++++      
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~~------  220 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS-----LNANM------  220 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS-----SSCCE------
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec-----CCCCE------
Confidence            334456677788888864 57899999999888753        2     57889999999986     57888      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      |++|+.|++|++||++.. ...+..+.     +|...|.+++|+|++++|++++.|++|++||++++.     .+..+..
T Consensus       221 l~sgs~D~~v~~wd~~~~-~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~  289 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRIT-SRAVRTYH-----GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-----QLQVYNR  289 (380)
T ss_dssp             EEEEETTSCEEEEETTTT-CCCCEEEC-----CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE-----EEEEECC
T ss_pred             EEEEECCCeEEEEECCCC-CcceEEEC-----CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-----EEEEecc
Confidence            999999999999999842 34444444     788999999999999999999999999999998863     2333322


Q ss_pred             -------ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe-ccccccccceeEEEEeeeCCCcEEE
Q 048511          221 -------HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-ARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       221 -------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                             +...|++++|+|++++|++|+.||.|++||+..++.       ...+ ....+|...|++++|+|  ++.+|+
T Consensus       290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~h~~~v~~l~~s~--dg~~l~  360 (380)
T 3iz6_a          290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-------VLNLGTLQNSHEGRISCLGLSS--DGSALC  360 (380)
T ss_dssp             CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-------EEEECCSCSSCCCCCCEEEECS--SSSEEE
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-------EEEEecccCCCCCceEEEEECC--CCCEEE
Confidence                   233589999999999999999999999999987762       1122 22357889999999999  999999


Q ss_pred             EecCCCeEEEEecCc
Q 048511          293 SGADEKVARVFEAPL  307 (351)
Q Consensus       293 s~~~dg~v~vw~~~~  307 (351)
                      +|+.|+.|++|++.+
T Consensus       361 sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EECTTSCEEEEECCS
T ss_pred             EeeCCCCEEEEecCC
Confidence            999999999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-39  Score=276.90  Aligned_cols=268  Identities=20%  Similarity=0.294  Sum_probs=217.5

Q ss_pred             CCCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      +|+.|++|++|++.....  ..++..+.+|...|++++|+        +++++|++++.|++|++||+.+++....+ ..
T Consensus        35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--------~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~  105 (319)
T 3frx_A           35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT--------ADGAYALSASWDKTLRLWDVATGETYQRF-VG  105 (319)
T ss_dssp             EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEE-EC
T ss_pred             EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCCeeEEE-cc
Confidence            478999999999875111  24567899999999999999        88999999999999999999988765443 34


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      +...+.++.+++++..+++++.++.+++|.       .+.+|...|.++.|.|......++..      |++++.|+.|+
T Consensus       106 h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~------l~s~~~d~~i~  179 (319)
T 3frx_A          106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------IISAGNDKMVK  179 (319)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE------EEEEETTSCEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE------EEEEeCCCEEE
Confidence            567899999999999999999999998775       46789999999999964321124456      99999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS  231 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s  231 (351)
                      +||++.  ......+.     +|...|.+++|+|++++|++++.|+.|++||+.+.     +++..+.. ...|.+++|+
T Consensus       180 ~wd~~~--~~~~~~~~-----~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~-~~~v~~~~~s  246 (319)
T 3frx_A          180 AWNLNQ--FQIEADFI-----GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-----KAMYTLSA-QDEVFSLAFS  246 (319)
T ss_dssp             EEETTT--TEEEEEEC-----CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-CSCEEEEEEC
T ss_pred             EEECCc--chhheeec-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecC-CCcEEEEEEc
Confidence            999998  66555554     78899999999999999999999999999999886     44566654 4679999999


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec-----cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA-----RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |++.+|++++. ..+++|++.....       ...+.     ....|...+.+++|+|  ++++|++|+.|+.|+|||+.
T Consensus       247 p~~~~la~~~~-~~i~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          247 PNRYWLAAATA-TGIKVFSLDPQYL-------VDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             SSSSEEEEEET-TEEEEEEETTEEE-------EEEECCCCTTCCGGGCCCEEEEEECT--TSSEEEEEETTSCEEEEEEE
T ss_pred             CCCCEEEEEcC-CCcEEEEeCcCee-------eeccCccccccccCcCcceeEEEECC--CCCEEEEeecCceEEEEEEe
Confidence            99999988875 4599999976642       11111     1123556689999999  99999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-39  Score=287.39  Aligned_cols=252  Identities=23%  Similarity=0.289  Sum_probs=222.8

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ...+.+|.++|++++|+        |++.+|++|+.||+|++||+.+++....+ ..+...+.+++|++++.++++++.+
T Consensus       101 ~~~l~gh~~~V~~~~~~--------p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFH--------PVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             SCEEECCSSCEEEEEEC--------SSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEeecccCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCC
Confidence            34678999999999999        88999999999999999999988765443 3456789999999999999999999


Q ss_pred             eeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc
Q 048511          102 YQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH  173 (351)
Q Consensus       102 ~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  173 (351)
                      +.+++|.        .+.+|...|.+++|+      +++.+      |++|+.|++|++||+++  +.++..+.     .
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~------p~~~~------l~s~s~D~~i~~wd~~~--~~~~~~~~-----~  232 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGHDHNVSSVSIM------PNGDH------IVSASRDKTIKMWEVQT--GYCVKTFT-----G  232 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEEC------SSSSE------EEEEETTSEEEEEETTT--CCEEEEEE-----C
T ss_pred             CeEEEEeCCCCceeEEEcCCCCCEEEEEEe------CCCCE------EEEEeCCCeEEEEECCC--CcEEEEEe-----C
Confidence            9887764        467899999999999      78888      99999999999999998  77777766     7


Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--------------------
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--------------------  233 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--------------------  233 (351)
                      |...|.+++|+|++.++++++.|+.|++||+.+.     .+...+.+|...|.+++|+|+                    
T Consensus       233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (410)
T 1vyh_C          233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP  307 (410)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence            8889999999999999999999999999999886     457788899999999999996                    


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                      +.+|++|+.|+.|++||++++.          .+..+.+|...|++++|+|  ++.+|++|+.|+.|++||+. ++.+.+
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~----------~~~~~~~h~~~v~~v~~~~--~g~~l~s~s~D~~i~vwd~~~~~~~~~  375 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGM----------CLMTLVGHDNWVRGVLFHS--GGKFILSCADDKTLRVWDYKNKRCMKT  375 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECS--SSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCc----------eEEEEECCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            6789999999999999998876          5566678999999999999  89999999999999999986 677777


Q ss_pred             eeeccc
Q 048511          313 LNHATF  318 (351)
Q Consensus       313 ~~~~~~  318 (351)
                      +.+|..
T Consensus       376 ~~~h~~  381 (410)
T 1vyh_C          376 LNAHEH  381 (410)
T ss_dssp             EECCSS
T ss_pred             EcCCCC
Confidence            776653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=278.43  Aligned_cols=258  Identities=16%  Similarity=0.197  Sum_probs=218.2

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccccceeeeEeeecCCeEEec
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      .....+++|.+.|++++|+    ++..+++.+|+||+.|++|++|++....... .....+...+.++.+++++..++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~----~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWG----TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             heeeecccCCCcEEEEEEe----cCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            3446678999999999999    2211357799999999999999998765322 2344567789999999999999999


Q ss_pred             CCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511           99 SSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus        99 ~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      +.++.+++|..        +..|...+.+++|+      |++++      |++++.|+.|++||++.  +.....+.   
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s------pdg~~------l~~g~~dg~v~i~~~~~--~~~~~~~~---  161 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS------PDSQY------LATGTHVGKVNIFGVES--GKKEYSLD---  161 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC------TTSSE------EEEECTTSEEEEEETTT--CSEEEEEE---
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC------CCCCE------EEEEcCCCcEEEEEcCC--CceeEEec---
Confidence            99999987753        45677789999999      78889      99999999999999998  66555554   


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                        .+...|.+++|+|++++|++++.|+.|++||++++     +++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus       162 --~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          162 --TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD  234 (321)
T ss_dssp             --CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             --CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence              66778999999999999999999999999999887     56788889999999999999999999999999999999


Q ss_pred             CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      ++...          ....+.+|...|.+++|+|  ++.+|++++.|+.|++||+. +..+.++.+|.
T Consensus       235 ~~~~~----------~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~  290 (321)
T 3ow8_A          235 VQHAN----------LAGTLSGHASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ  290 (321)
T ss_dssp             TTTCC----------EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCcc----------eeEEEcCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence            98776          5556678999999999999  89999999999999999987 77777776654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-39  Score=300.28  Aligned_cols=266  Identities=17%  Similarity=0.249  Sum_probs=216.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec---
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS---   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---   77 (351)
                      +|+.|++|++||... +  .....+.+|.+.|++++|+        |++++|++++.|++|++||+.+++.......   
T Consensus       165 s~s~D~~v~lwd~~~-~--~~~~~l~~H~~~V~~v~fs--------pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~  233 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPP-F--KFKSTFGEHTKFVHSVRYN--------PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL  233 (611)
T ss_dssp             EEETTSCEEEEETTT-B--EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred             EEeCCCeEEEEECCC-C--eEeeeeccccCceEEEEEC--------CCCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence            478899999999887 5  5567899999999999999        8899999999999999999988876554432   


Q ss_pred             ---ccccceeeeEeeecCCeEEecCCceeEEEEEe---------------------------------------------
Q 048511           78 ---TYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------------------------------------------  109 (351)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------------------------------------  109 (351)
                         .+...+.+++|+|+++.|++++.++.+++|..                                             
T Consensus       234 ~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~  313 (611)
T 1nr0_A          234 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL  313 (611)
T ss_dssp             SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred             cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence               46678999999999999999988887766542                                             


Q ss_pred             ------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE-----------------
Q 048511          110 ------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV-----------------  166 (351)
Q Consensus       110 ------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------------  166 (351)
                            +.+|...|++++|+      +++++      |++++.|++|++||+.+  +.....+                 
T Consensus       314 ~~~~~~~~gh~~~v~~l~~s------pdg~~------l~s~s~D~~v~~Wd~~~--~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          314 GSIDQVRYGHNKAITALSSS------ADGKT------LFSADAEGHINSWDIST--GISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             TEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--CCEEECSSCSCSSCEEEEEECTTS
T ss_pred             CCcceEEcCCCCCEEEEEEe------CCCCE------EEEEeCCCcEEEEECCC--CceeeecccCCcceEEEEEECCCC
Confidence                  34788999999999      78999      99999999999999876  2221110                 


Q ss_pred             -----------Eeccc-------------------------------------------------cccccceEEEEEcCC
Q 048511          167 -----------TVGEL-------------------------------------------------SHSALGFYGGHWSPD  186 (351)
Q Consensus       167 -----------~~~~~-------------------------------------------------~~~~~~i~~i~~~~~  186 (351)
                                 .+...                                                 ..+...+.+++|+|+
T Consensus       380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd  459 (611)
T 1nr0_A          380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND  459 (611)
T ss_dssp             CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred             cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence                       00000                                                 012345789999999


Q ss_pred             CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEE
Q 048511          187 GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHE  266 (351)
Q Consensus       187 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  266 (351)
                      +++|++++.|++|++||+.+...   ..... .+|...|++++|+|++++|++++.|++|++||+.+..         +.
T Consensus       460 g~~lasgs~D~~v~lwd~~~~~~---~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---------~~  526 (611)
T 1nr0_A          460 KQFVAVGGQDSKVHVYKLSGASV---SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---------EL  526 (611)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEE---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---------EE
T ss_pred             CCEEEEeCCCCeEEEEEccCCce---eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---------ce
Confidence            99999999999999999987531   12233 6799999999999999999999999999999997632         12


Q ss_pred             ec--cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          267 VA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       267 ~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..  ....|...|++++|+|  ++++|++|+.|+.|+||++.
T Consensus       527 ~~~~~~~~H~~~V~~v~fsp--dg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          527 AHTNSWTFHTAKVACVSWSP--DNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             SCCCCCCCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred             eeeeeeeecccceeEEEECC--CCCEEEEEECCCcEEEEECC
Confidence            22  2335889999999999  99999999999999999987

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-38  Score=275.43  Aligned_cols=272  Identities=17%  Similarity=0.261  Sum_probs=212.9

Q ss_pred             CCCCCceEEEEEccCCCc-----eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511            1 MGGLDNKIHLYRGQRTGK-----FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~   75 (351)
                      +|+.|++|++||+.. ++     ..+...+.+|...|++++|+        +++.+|++++.|++|++||+.+++....+
T Consensus        44 sgs~D~~v~iWd~~~-~~~~~~~~~~~~~l~~h~~~V~~~~~~--------~~~~~l~s~s~D~~v~lwd~~~~~~~~~~  114 (343)
T 2xzm_R           44 SGSRDKTVMIWKLYE-EEQNGYFGIPHKALTGHNHFVSDLALS--------QENCFAISSSWDKTLRLWDLRTGTTYKRF  114 (343)
T ss_dssp             EEETTSCEEEEEECS-SCCSSBSEEEEEEECCCSSCEEEEEEC--------SSTTEEEEEETTSEEEEEETTSSCEEEEE
T ss_pred             EEcCCCEEEEEECCc-CCcccccccccchhccCCCceEEEEEC--------CCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            578899999999975 21     24567889999999999999        88999999999999999999988765443


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEec----------cccccceEEEEecCCCCC----CCCCcccCCCcee
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTA----PSDGVSCQQPSSI  141 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~----~~~~~~~~~~~~l  141 (351)
                       ..+...+.+++|+|++..+++++.++.+++|...          .+|...|.+++|+|....    .+.+.+      |
T Consensus       115 -~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------l  187 (343)
T 2xzm_R          115 -VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY------F  187 (343)
T ss_dssp             -ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCE------E
T ss_pred             -cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCE------E
Confidence             3456789999999999999999999999888642          268889999999964310    011245      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ++++.|+.|++||..   ......+.     .|...|.+++|+|++++|++++.|+.|++||+....    .+...+ .+
T Consensus       188 ~s~~~d~~i~iwd~~---~~~~~~~~-----~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~~~-~~  254 (343)
T 2xzm_R          188 ASVGWDGRLKVWNTN---FQIRYTFK-----AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT----YPQREF-DA  254 (343)
T ss_dssp             EEEETTSEEEEEETT---TEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS----SCSEEE-EC
T ss_pred             EEEcCCCEEEEEcCC---CceeEEEc-----CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc----ccceee-cC
Confidence            999999999999943   44444444     788899999999999999999999999999995432    223333 24


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE-----EeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH-----EVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      ...|.+++|+|++.+++++ .|+.|++||+.+......  ..+.     ......+|...|++++|+|  ++.+|++|+.
T Consensus       255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~sg~~  329 (343)
T 2xzm_R          255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPV--CTIEAEPITKAEGQKGKNPQCTSLAWNA--LGKKLFAGFT  329 (343)
T ss_dssp             SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSE--EECCCCSGGGBTTBCCSCCCEEEEEECS--SSCCEEEEET
T ss_pred             CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCce--EEeecCcchhhhhhcCCCCceEEEEECC--CCCeEEEecC
Confidence            5679999999999887655 588899999987652110  0000     0111236777899999999  9999999999


Q ss_pred             CCeEEEEecC
Q 048511          297 EKVARVFEAP  306 (351)
Q Consensus       297 dg~v~vw~~~  306 (351)
                      ||.|++|+++
T Consensus       330 Dg~v~~w~~~  339 (343)
T 2xzm_R          330 DGVIRTFSFE  339 (343)
T ss_dssp             TSEEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            9999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-39  Score=284.54  Aligned_cols=268  Identities=17%  Similarity=0.225  Sum_probs=219.6

Q ss_pred             EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeE
Q 048511            8 IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLA   87 (351)
Q Consensus         8 i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~   87 (351)
                      +..|+...   ..+..++.+|.+.|++++|+        |++++|+||+.|++|++||+.+++....+. .+...+.+++
T Consensus        48 ~~~~~~~~---~~~~~~l~gH~~~V~~~~~s--------p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~  115 (380)
T 3iz6_a           48 AVSFNPTD---LVCCRTLQGHSGKVYSLDWT--------PEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECA  115 (380)
T ss_dssp             CCCCCCCC---CEEEEEECCCSSCEEEEEEC--------TTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCE
T ss_pred             ccccccce---eEEeecccccccEEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEE
Confidence            33455544   36778999999999999999        889999999999999999998876654443 3456788999


Q ss_pred             eeecCCeEEecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           88 SYIEGPVLVAGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        88 ~~~~~~~l~~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      |+|+++.+++++.++.++++..               +.+|.+.|.++.|.|     .++..      |++|+.|++|++
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~-----~~~~~------l~s~s~D~~i~~  184 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP-----DQETR------LITGSGDQTCVL  184 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS-----SSSSC------EEEECTTSCEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec-----CCCCE------EEEECCCCcEEE
Confidence            9999999999999998888753               568999999999996     34567      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS  231 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s  231 (351)
                      ||+++  +..+..+......+|...|.+++|++ +++++++|+.|+.|++||++...    .++..+.+|...|++++|+
T Consensus       185 wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v~~v~~~  258 (380)
T 3iz6_a          185 WDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDINSVKFF  258 (380)
T ss_dssp             ECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCCCEEEEC
T ss_pred             EEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCeEEEEEe
Confidence            99998  76666554333457888999999987 78999999999999999998543    5577888999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc----cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP----QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-  306 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-  306 (351)
                      |++++|++++.|++|++||++++..       ...+...    ..+...|++++|+|  ++.+|++|+.||.|++||+. 
T Consensus       259 p~~~~l~s~s~D~~i~lwd~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          259 PDGQRFGTGSDDGTCRLFDMRTGHQ-------LQVYNREPDRNDNELPIVTSVAFSI--SGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             TTSSEEEEECSSSCEEEEETTTTEE-------EEEECCCCSSSCCSSCSCSEEEECS--SSSEEEEECTTSCEEEEETTT
T ss_pred             cCCCeEEEEcCCCeEEEEECCCCcE-------EEEecccccccccccCceEEEEECC--CCCEEEEEECCCCEEEEECCC
Confidence            9999999999999999999998762       1111111    11223489999999  99999999999999999976 


Q ss_pred             chhhhce
Q 048511          307 LSFLKTL  313 (351)
Q Consensus       307 ~~~~~~~  313 (351)
                      ++.+..+
T Consensus       330 ~~~~~~~  336 (380)
T 3iz6_a          330 AEMVLNL  336 (380)
T ss_dssp             CCEEEEE
T ss_pred             CceEEEE
Confidence            5555444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.4e-39  Score=275.52  Aligned_cols=255  Identities=20%  Similarity=0.226  Sum_probs=216.0

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ....++.+|.+.|++++|+        +++++|++++.||+|++||+.++....... .+...+.+++|+|++.++++++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s--------~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~  116 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWG--------TDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             hhheeecCCCCceEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEe
Confidence            4567899999999999999        889999999999999999998877654443 3456788999999999999999


Q ss_pred             CceeEEEEE------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511          100 SSYQVSVES------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus       100 ~~~~~~~~~------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      .++.+.++.            .+.+|...|.++.|+      +++ .      +++++.|++|++||+++  +..+..+.
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~-~------l~s~s~d~~i~~wd~~~--~~~~~~~~  181 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL------DDN-Q------IVTSSGDTTCALWDIET--GQQTTTFT  181 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE------ETT-E------EEEEETTSCEEEEETTT--TEEEEEEC
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC------CCC-c------EEEEECCCcEEEEECCC--CcEEEEEc
Confidence            888876654            356899999999999      444 3      89999999999999998  77666655


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                           .|...|.+++|+|+++++++++.|+.|++||++++     .+...+.+|...|++++|+|++++|++++.|+.|+
T Consensus       182 -----~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~  251 (340)
T 1got_B          182 -----GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCR  251 (340)
T ss_dssp             -----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             -----CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence                 78889999999999999999999999999999886     55778889999999999999999999999999999


Q ss_pred             EEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511          248 VFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      +||++....       .... ....+...|++++|+|  ++.+|++|+.|+.|++||+. +..+..+.+|..
T Consensus       252 iwd~~~~~~-------~~~~-~~~~~~~~v~~~~~s~--~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~  313 (340)
T 1got_B          252 LFDLRADQE-------LMTY-SHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN  313 (340)
T ss_dssp             EEETTTTEE-------EEEE-CCTTCCSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCCCcE-------EEEE-ccCCcccceEEEEECC--CCCEEEEECCCCeEEEEEcccCcEeeEeecCCC
Confidence            999987751       1111 1123334699999999  99999999999999999976 666777776653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-38  Score=274.75  Aligned_cols=255  Identities=19%  Similarity=0.210  Sum_probs=216.2

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ....++.+|.+.|++++|+        +++++|+||+.||+|++||..++....... .+...+.+++|+|++..+++++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s--------~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWC--------KDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             CEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEES
T ss_pred             EEEEEecCCCCeEEEEEEC--------CCCCEEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEee
Confidence            4567899999999999999        889999999999999999998776554433 2345788999999999999999


Q ss_pred             CceeEEEEEe--------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511          100 SSYQVSVESL--------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus       100 ~~~~~~~~~~--------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  165 (351)
                      .++.+.++..              +.+|...|.++.|+      +++..      |++++.|++|++||+++  +..+..
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~t~s~D~~v~lwd~~~--~~~~~~  191 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT------NSDMQ------ILTASGDGTCALWDVES--GQLLQS  191 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC------SSSSE------EEEEETTSEEEEEETTT--CCEEEE
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe------CCCCE------EEEEeCCCcEEEEeCCC--CeEEEE
Confidence            9998877643              45689999999999      78888      99999999999999998  777777


Q ss_pred             EEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          166 VTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      +.     .|...|.+++|+|  ++++|++++.|+.|++||++++     +++..+.+|...|++++|+|++.+|++++.|
T Consensus       192 ~~-----~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          192 FH-----GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-----QCVQAFETHESDVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EE-----CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             Ec-----CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence            66     7888999999987  4689999999999999999987     5677888999999999999999999999999


Q ss_pred             CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      ++|++||++....       .... ....+...+++++|+|  ++.+|++|+.|+.|++||+. +..+..+.+|.
T Consensus       262 ~~v~lwd~~~~~~-------~~~~-~~~~~~~~~~~~~~s~--~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~  326 (354)
T 2pbi_B          262 ATCRLYDLRADRE-------VAIY-SKESIIFGASSVDFSL--SGRLLFAGYNDYTINVWDVLKGSRVSILFGHE  326 (354)
T ss_dssp             SCEEEEETTTTEE-------EEEE-CCTTCCSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             CeEEEEECCCCcE-------EEEE-cCCCcccceeEEEEeC--CCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence            9999999987751       1111 1222344689999999  99999999999999999985 66666666654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.3e-39  Score=297.14  Aligned_cols=268  Identities=16%  Similarity=0.118  Sum_probs=216.6

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc-ceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS-ANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~   83 (351)
                      +++|++|++.+ +  .....+.+|.+.|++++|+        |++++||+|+.|++|+|||+.++... ......+...+
T Consensus        38 ~~~v~l~~~~~-~--~~~~~~~~h~~~v~~~~~s--------pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v  106 (611)
T 1nr0_A           38 GTSVYTVPVGS-L--TDTEIYTEHSHQTTVAKTS--------PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV  106 (611)
T ss_dssp             TTEEEEEETTC-S--SCCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE
T ss_pred             CCEEEEecCCC-c--ccCeEecCCCCceEEEEEC--------CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce
Confidence            56899999987 5  3456788999999999999        88999999999999999999765433 22334456789


Q ss_pred             eeeEeeecCCeEEecCCc----eeEEEE------EeccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEEE
Q 048511           84 ISLASYIEGPVLVAGSSS----YQVSVE------SLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~----~~~~~~------~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~i  152 (351)
                      .+++|+|+++.+++++.+    +.+.++      ..+.+|...|.+++|+      |++. .      |++|+.|++|++
T Consensus       107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~------p~~~~~------l~s~s~D~~v~l  174 (611)
T 1nr0_A          107 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK------PSRPFR------IISGSDDNTVAI  174 (611)
T ss_dssp             EEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC------SSSSCE------EEEEETTSCEEE
T ss_pred             EEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEEC------CCCCeE------EEEEeCCCeEEE
Confidence            999999999999876543    344443      3578999999999999      5554 6      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-------cccccE
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------GHFAAV  225 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~~~~~v  225 (351)
                      ||.+.  ++....+.     +|...|.+++|+|++++|++++.|++|++||+.+++     +...+.       +|...|
T Consensus       175 wd~~~--~~~~~~l~-----~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-----~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          175 FEGPP--FKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EETTT--BEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEECBCTTSSSCSSSSCE
T ss_pred             EECCC--CeEeeeec-----cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----EeeeeccccccccccCCCE
Confidence            99887  66665554     899999999999999999999999999999998763     333332       799999


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC----------------------------cc-----ceEEeccccc
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG----------------------------EN-----SWHEVARPQV  272 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~-----~~~~~~~~~~  272 (351)
                      .+++|+|++++|++++.|++|++||+.+++.....                            ..     .......+.+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            99999999999999999999999999876532100                            00     0012233457


Q ss_pred             cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chh
Q 048511          273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSF  309 (351)
Q Consensus       273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~  309 (351)
                      |...|++++|+|  ++++|++++.|+.|++||+. +..
T Consensus       323 h~~~v~~l~~sp--dg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          323 HNKAITALSSSA--DGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCce
Confidence            888999999999  99999999999999999987 443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.6e-39  Score=279.12  Aligned_cols=258  Identities=15%  Similarity=0.180  Sum_probs=203.6

Q ss_pred             CceEEEEEccCCCce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee---eccc
Q 048511            5 DNKIHLYRGQRTGKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT---QSTY   79 (351)
Q Consensus         5 dg~i~vw~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~---~~~~   79 (351)
                      |++|++|+..+ +..  .......+|...|++++|+        +++. +++++.||+|++||+.+++.....   ...+
T Consensus        69 d~~v~~~~~~~-~~~~~~~~~~~~~~~~~V~~~~~s--------~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h  138 (357)
T 4g56_B           69 GGSIWVFKDPE-GAPNESLCTAGVQTEAGVTDVAWV--------SEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH  138 (357)
T ss_dssp             CEEEEEESSCC----CGGGCSEEEECSSCEEEEEEE--------TTTE-EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred             cCeEEEEECCC-CCcceeEecccCCCCCCEEEEEEc--------CCCC-EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence            88999999876 421  1123456799999999999        6665 556788999999999887654322   2345


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeE
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTM  150 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i  150 (351)
                      ...+.+++|+|+++.|++++.++.+++|.        .+.+|...|++++|+|      ++ .+      +++++.|+.|
T Consensus       139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~------~~~~~------~~s~~~dg~v  206 (357)
T 4g56_B          139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP------GKDTI------FLSCGEDGRI  206 (357)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT------TCSSC------EEEEETTSCE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc------CCCce------eeeeccCCce
Confidence            67899999999999999999999887664        4678999999999994      44 46      8999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      ++||+++  +.....+.   ...+...+.+++|+|++ .+|++++.|+.|++||++++     +++..+.+|...|++++
T Consensus       207 ~~wd~~~--~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----~~~~~~~~~~~~v~~l~  276 (357)
T 4g56_B          207 LLWDTRK--PKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----DSAQTSAVHSQNITGLA  276 (357)
T ss_dssp             EECCTTS--SSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----GGCEEECCCSSCEEEEE
T ss_pred             EEEECCC--Cceeeeee---eccccccccchhhhhcccceEEEeecccceeEEECCCC-----cEeEEEeccceeEEEEE
Confidence            9999998  54443332   23566789999999974 68889999999999999887     56788889999999999


Q ss_pred             eecCC-CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+|++ ++|++++.|++|+|||+++++          .+.. .+|...|++++|+| .++.+|++++.||.|++|+++
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~~~----------~~~~-~~H~~~V~~vafsP-~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADFSE----------VFRD-LSHRDFVTGVAWSP-LDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTSCE----------EEEE-CCCSSCEEEEEECS-SSTTEEEEEETTSCEEEEECC
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCCCc----------EeEE-CCCCCCEEEEEEeC-CCCCEEEEEcCCCeEEEEECC
Confidence            99987 679999999999999998775          3332 37889999999997 468899999999999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.4e-38  Score=289.68  Aligned_cols=265  Identities=23%  Similarity=0.356  Sum_probs=228.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|++|++|+...    ..+..+.+|...|++++|+        +++++|++++.|++|++||...... . ....+.
T Consensus       279 ~~~~d~~i~~w~~~~----~~~~~~~~h~~~v~~~~~~--------~~~~~l~t~~~d~~i~~w~~~~~~~-~-~~~~~~  344 (577)
T 2ymu_A          279 SASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRNGQHL-Q-TLTGHS  344 (577)
T ss_dssp             EEETTSCEEEEETTS----CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTSCEE-E-EECCCS
T ss_pred             EEeCCCEEEEEeCCC----cEEEEEecCCCCeEEEEEC--------CCCCEEEEEeCCCeEEEEeCCCCee-E-EEeCCC
Confidence            367899999999765    3566788999999999999        8899999999999999999875432 2 223446


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+.+++++|+++.++++..++.+.++.       .+.+|...|.+++|+      +++++      |++++.|+.|++|
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s------~dg~~------l~~~~~d~~v~~~  412 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS------PDGQT------IASASDDKTVKLW  412 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC------TTSSC------EEEEETTSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC------CCCCE------EEEEeCCCEEEEE
Confidence            6788999999999999999888887653       467899999999999      78999      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      |..   ++.+..+.     .|...|.+++|+|++++|++++.|+.|++||...      +.+..+.+|...|++++|+|+
T Consensus       413 ~~~---~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~~~spd  478 (577)
T 2ymu_A          413 NRN---GQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPD  478 (577)
T ss_dssp             CTT---CCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTT
T ss_pred             eCC---CCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCCCCEEEEEEcCC
Confidence            964   55555555     7888999999999999999999999999999754      456788899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                      +++|++++.|+.|++||. +++          .+..+.+|...|++++|+|  ++++|++++.||.|+|||.+++.+.++
T Consensus       479 ~~~las~~~d~~i~iw~~-~~~----------~~~~~~~h~~~v~~l~~s~--dg~~l~s~~~dg~v~lwd~~~~~~~~~  545 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNR-NGQ----------LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTL  545 (577)
T ss_dssp             SCEEEEEETTSEEEEEET-TSC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEcC-CCC----------EEEEEeCCCCCEEEEEEcC--CCCEEEEEECcCEEEEEeCCCCEEEEE
Confidence            999999999999999995 333          4555678999999999999  999999999999999999988888888


Q ss_pred             eeccc
Q 048511          314 NHATF  318 (351)
Q Consensus       314 ~~~~~  318 (351)
                      .+|.+
T Consensus       546 ~~h~~  550 (577)
T 2ymu_A          546 TGHSS  550 (577)
T ss_dssp             ECCSS
T ss_pred             cCCCC
Confidence            87764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.7e-38  Score=288.62  Aligned_cols=251  Identities=22%  Similarity=0.361  Sum_probs=217.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||... .   .+..+.+|...|.+++|+        +++++|++++.|+.|++|+.. ++... ....+.
T Consensus       320 t~~~d~~i~~w~~~~-~---~~~~~~~~~~~v~~~~~s--------~~g~~l~~~~~dg~v~~~~~~-~~~~~-~~~~~~  385 (577)
T 2ymu_A          320 SASDDKTVKLWNRNG-Q---HLQTLTGHSSSVWGVAFS--------PDGQTIASASDDKTVKLWNRN-GQLLQ-TLTGHS  385 (577)
T ss_dssp             EEETTSCEEEEETTS-C---EEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETT-CCEEE-EEECCS
T ss_pred             EEeCCCeEEEEeCCC-C---eeEEEeCCCCCEEEEEEC--------CCCCEEEEEeCCCEEEEEcCC-CCEEE-EecCCC
Confidence            367899999999877 3   456788999999999999        889999999999999999964 33332 233456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ..+.+++|+|+++.+++++.++.+.++       ..+.+|...|++++|+      +++++      |++++.|+.|++|
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s------~d~~~------l~~~~~d~~v~~w  453 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS------PDDQT------IASASDDKTVKLW  453 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC------CCCCE------EEEEcCCCEEEEE
Confidence            788999999999999999988888665       4567899999999999      78888      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      |..   +..+..+.     .|...|.+++|+|++++|++++.|+.|++||...      +++..+.+|...|++++|+|+
T Consensus       454 ~~~---~~~~~~~~-----~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------~~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          454 NRN---GQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             ETT---SCEEEEEE-----CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS------CEEEEEECCSSCEEEEEECTT
T ss_pred             ECC---CCEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------CEEEEEeCCCCCEEEEEEcCC
Confidence            964   45555555     7888999999999999999999999999999644      457788999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      +++|++++.|+.|+|||. +++          .+..+.+|...|++++|+|  |+++|++++.|+.|++||
T Consensus       520 g~~l~s~~~dg~v~lwd~-~~~----------~~~~~~~h~~~v~~~~fs~--dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNR-NGQ----------LLQTLTGHSSSVWGVAFSP--DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSC----------EEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEECcCEEEEEeC-CCC----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEeC
Confidence            999999999999999996 333          4556678999999999999  999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.9e-38  Score=269.63  Aligned_cols=259  Identities=21%  Similarity=0.295  Sum_probs=211.9

Q ss_pred             ceEEEEeeeecCC-ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eeecccccceeeeEeeecCCe
Q 048511           18 KFVRACELKGHTD-WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        18 ~~~~~~~~~~h~~-~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      .+.++.++.+|.+ .|++++|+        |++++||+|+.|++|+|||+..+....  .....+...+.+++|+|++++
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~s--------p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~   75 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWN--------PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY   75 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEEC--------TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE
T ss_pred             cEEEeeeecCCCCCcEEEEEEC--------CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE
Confidence            3577889999998 99999999        889999999999999999998765432  223456778999999999999


Q ss_pred             EEecCCceeEEEE----------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceE
Q 048511           95 LVAGSSSYQVSVE----------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWM  163 (351)
Q Consensus        95 l~~~~~~~~~~~~----------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~  163 (351)
                      |++++.++.+.+|          ..+.+|...|.+++|+      +++++      |++|+.|++|++||++.... ..+
T Consensus        76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s------p~~~~------l~s~s~D~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA------PSGNL------LATCSRDKSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe------CCCCE------EEEEECCCeEEEEECCCCCCeEEE
Confidence            9999988877665          3467899999999999      78889      99999999999999987321 122


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      ..+     ..|...|.+++|+|++++|++++.|+.|++||++..+.   .+...+.+|...|++++|+|++++|++++.|
T Consensus       144 ~~~-----~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          144 SVL-----NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             EEE-----CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEe-----cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence            222     37888999999999999999999999999999987531   3456788999999999999999999999999


Q ss_pred             CcEEEEcCCCcccccc-----CccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          244 QTTRVFAPWKNVASLM-----GENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++|+|||.........     ....+..+..+.+ |...|++++|++  ++..|++++.|+.|++|+..
T Consensus       216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ--LTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT--TTCCEEEEETTSCEEEEEEC
T ss_pred             CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec--CCCEEEEEeCCCeEEEEEeC
Confidence            9999999743321100     0123344444443 778899999999  89999999999999999976

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-37  Score=265.15  Aligned_cols=259  Identities=22%  Similarity=0.290  Sum_probs=218.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++|+..+ ++  ....+.+|...|.+++|+        +++++|++++.|+.|++||+.+++...... .+.
T Consensus        40 s~~~dg~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~  107 (312)
T 4ery_A           40 SSSADKLIKIWGAYD-GK--FEKTISGHKLGISDVAWS--------SDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHS  107 (312)
T ss_dssp             EEETTSCEEEEETTT-CC--EEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred             EeeCCCeEEEEeCCC-cc--cchhhccCCCceEEEEEc--------CCCCEEEEECCCCEEEEEECCCCcEEEEEc-CCC
Confidence            478899999999988 64  456788999999999999        889999999999999999999877655443 345


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++.|+|++..+++++.++.+.++.        .+..|..+|.+++|+      +++++      |++++.|+.|++
T Consensus       108 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~~  175 (312)
T 4ery_A          108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN------RDGSL------IVSSSYDGLCRI  175 (312)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc------CCCCE------EEEEeCCCcEEE
Confidence            6788999999999999999998887764        456788999999999      78888      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE--EEe
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD--ISW  230 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~--v~~  230 (351)
                      ||+++  +..+..+.    ..+...+..++|+|++++|++++.|+.|++||++++     +++..+.+|...+..  ..+
T Consensus       176 wd~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          176 WDTAS--GQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             EETTT--CCEEEEEC----CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-----EEEEEECSSCCSSSCCCEEE
T ss_pred             EECCC--CceeeEEe----ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEEecCCceEEEEEEE
Confidence            99998  66555443    245667999999999999999999999999999886     456666666654322  233


Q ss_pred             -ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec--CCCeEEEEecC
Q 048511          231 -SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA--DEKVARVFEAP  306 (351)
Q Consensus       231 -sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~dg~v~vw~~~  306 (351)
                       .+++.+|++|+.||.|++||+.+++          .+..+.+|...|.+++|+|  ++.+|++++  .|+.|++|+.+
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~p--~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKE----------IVQKLQGHTDVVISTACHP--TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECS--SSSEEEEEECTTTCCEEEEECC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCch----------hhhhhhccCCcEEEEeecC--cCCceEEEEccCCccEEEecCC
Confidence             3678899999999999999998876          5666778999999999999  899999886  79999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.6e-37  Score=267.90  Aligned_cols=273  Identities=16%  Similarity=0.189  Sum_probs=220.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee-ccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ-STY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~   79 (351)
                      +|+.||.|++||+.+ +++..+..+.+|...|++++|+        +++++|++++.||.|++||+.+++...... ..+
T Consensus        25 ~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~   95 (372)
T 1k8k_C           25 ICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWA--------PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   95 (372)
T ss_dssp             EECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEE--------TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEe--------CCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence            367899999999998 7666888999999999999999        889999999999999999998776433322 345


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+.++.|++++..++++..++.+.++..            ..+|...|.+++|+      +++++      |++++.|
T Consensus        96 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~d  163 (372)
T 1k8k_C           96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH------PNSVL------LAAGSCD  163 (372)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC------TTSSE------EEEEETT
T ss_pred             CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc------CCCCE------EEEEcCC
Confidence            668899999999999999998888766432            35678899999999      78888      9999999


Q ss_pred             CeEEEEeccC----------------CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC
Q 048511          148 KTMMIWQPEK----------------TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN  211 (351)
Q Consensus       148 ~~i~iwd~~~----------------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  211 (351)
                      +.|++||++.                ..+..+..+.     .|...|.+++|+|++++|++++.|+.|++||++++    
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----  234 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----  234 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecC-----CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC----
Confidence            9999999752                1144444443     77889999999999999999999999999999987    


Q ss_pred             cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC--ccccccC---------------cc-------ceEEe
Q 048511          212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK--NVASLMG---------------EN-------SWHEV  267 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~--~~~~~~~---------------~~-------~~~~~  267 (351)
                       +++..+..|...|.+++|+|++++|+++ .|+.|++|++..  +......               ..       .....
T Consensus       235 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (372)
T 1k8k_C          235 -MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  312 (372)
T ss_dssp             -TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             -ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence             5677888899999999999999988877 899999999987  3100000               00       00010


Q ss_pred             ------ccc-cccccceeEEEEeeeCCC---cEEEEecCCCeEEEEecC
Q 048511          268 ------ARP-QVHGHDINCVTIIQGKGN---HRFVSGADEKVARVFEAP  306 (351)
Q Consensus       268 ------~~~-~~~~~~i~~~~~~~~~~~---~~l~s~~~dg~v~vw~~~  306 (351)
                            ..+ .+|...|++++|.+ .++   .+|++|+.||.|++|++.
T Consensus       313 ~~~~~~~~~~~~h~~~v~~~~~~~-~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          313 GSAAAGAGLDSLHKNSVSQISVLS-GGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ------CCCSSSSSSCEEEEEEEE-STTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cCccccccccccccCCcceeEEec-CCCcceeeEEEecCCCceEEEEec
Confidence                  222 48999999999886 355   899999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.5e-37  Score=259.44  Aligned_cols=253  Identities=17%  Similarity=0.238  Sum_probs=201.6

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeec--CCeEEecC
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIE--GPVLVAGS   99 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~   99 (351)
                      ..+.+|.+.|++++|+        +++++||||+.|++|++||+.... ........+...+.+++|+++  +..|++++
T Consensus         3 ~~~~~h~~~V~~~~~s--------~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s   74 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMD--------YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS   74 (297)
T ss_dssp             EECCSCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCcCceEEEEEC--------CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc
Confidence            4678999999999999        889999999999999999997542 233344456778999999764  89999999


Q ss_pred             CceeEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          100 SSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       100 ~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      .++.+++|..          +.+|...|.+++|+|.    .++.+      |++++.|+.|++||++.........+   
T Consensus        75 ~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~----~~g~~------l~s~s~d~~v~~wd~~~~~~~~~~~~---  141 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH----EYGPM------LLVASSDGKVSVVEFKENGTTSPIII---  141 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCG----GGCSE------EEEEETTSEEEEEEBCSSSCBCCEEE---
T ss_pred             CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcC----CCCcE------EEEEECCCcEEEEEecCCCceeeeee---
Confidence            9999988764          3458889999999941    02678      99999999999999987321112223   


Q ss_pred             cccccccceEEEEEcCC-------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC--
Q 048511          170 ELSHSALGFYGGHWSPD-------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS--  234 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~-------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--  234 (351)
                        ..|...|.+++|+|+             +++|++++.|+.|++||+++... .+.+...+.+|...|.+++|+|++  
T Consensus       142 --~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          142 --DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             --ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             --ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCceEEEEECCCCCC
Confidence              378889999999997             57999999999999999987531 012456788999999999999984  


Q ss_pred             -CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          235 -DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       235 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       .+|++++.|++|+|||++.....     ..........|...|.+++|+|  ++.+|++++.|+.|+||+..
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~--~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGP-----WKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSC-----CEEEESSSSCCSSCEEEEEECS--SSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCc-----cceeeeecccCCCcEEEEEECC--CCCEEEEEcCCCcEEEEEEC
Confidence             88999999999999999765310     0111222245777899999999  99999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.6e-37  Score=270.85  Aligned_cols=268  Identities=22%  Similarity=0.362  Sum_probs=214.4

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecC------------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHT------------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      .|++++||++.+ ++.  +..+..|.                  ..|++++|+        +++++|++|+.|++|++||
T Consensus        83 ~~~~v~i~~~~~-g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--------~dg~~l~s~~~d~~i~iwd  151 (393)
T 1erj_A           83 CNKTTQVYRVSD-GSL--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--------PDGKFLATGAEDRLIRIWD  151 (393)
T ss_dssp             CBSCEEEEETTT-CCE--EEEECC-----------------CCCCBEEEEEEC--------TTSSEEEEEETTSCEEEEE
T ss_pred             cCCcEEEEEecC-CCE--EEEecCccccccccccccccccCCCceeEEEEEEC--------CCCCEEEEEcCCCeEEEEE
Confidence            378999999988 643  34454443                  249999999        8899999999999999999


Q ss_pred             cCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccceEEEEecCCCCCCCCCcccCCC
Q 048511           66 LALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      +.+++.... ...+...+.+++|+|++..+++++.++.+++|....       .+...+.+++|+|     .++++    
T Consensus       152 ~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~----  221 (393)
T 1erj_A          152 IENRKIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP-----GDGKY----  221 (393)
T ss_dssp             TTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS-----TTCCE----
T ss_pred             CCCCcEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEEC-----CCCCE----
Confidence            988765443 344567899999999999999999999998886422       3567799999995     48888    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEec--cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVG--ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------  210 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------  210 (351)
                        |++|+.|+.|++||+++  +..+..+...  ....|...|.+++|+|++++|++++.|+.|++||+++....      
T Consensus       222 --l~~~s~d~~v~iwd~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          222 --IAAGSLDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             --EEEEETTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             --EEEEcCCCcEEEEECCC--CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence              99999999999999998  6655544211  12367889999999999999999999999999999764211      


Q ss_pred             -CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee----
Q 048511          211 -NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG----  285 (351)
Q Consensus       211 -~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----  285 (351)
                       ...+...+.+|...|.+++|+|++.+|++++.|+.|++||+.++.          .+..+.+|...|.+++|++.    
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~~  367 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----------PLLMLQGHRNSVISVAVANGSSLG  367 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECSSCTTC
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe----------EEEEECCCCCCEEEEEecCCcCcC
Confidence             012345677899999999999999999999999999999998876          55666789999999999861    


Q ss_pred             CCCcEEEEecCCCeEEEEecC
Q 048511          286 KGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +++.+|++|+.||.|+||++.
T Consensus       368 p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          368 PEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEECCCCcEEECccc
Confidence            257899999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-37  Score=272.17  Aligned_cols=263  Identities=13%  Similarity=0.059  Sum_probs=216.8

Q ss_pred             CCCCCceEEEEEccCCCc----eEEEEeeeecCCceeEEEeeCCcccCCCCC----c---cEEEEeeCCCcEEEEecCCC
Q 048511            1 MGGLDNKIHLYRGQRTGK----FVRACELKGHTDWIRSLDFSLPVCTSGEAI----S---ILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~----~---~~l~t~~~dg~i~iwd~~~~   69 (351)
                      +|+.||+|++|++.. ++    +..+..+.+|...|++++|+        ++    +   ++|++++.|+.|++||+.++
T Consensus        31 s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~  101 (397)
T 1sq9_A           31 SCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVL--------QAIERDAFELCLVATTSFSGDLLFYRITRE  101 (397)
T ss_dssp             EEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEE--------EEEETTTEEEEEEEEEETTSCEEEEEEEEC
T ss_pred             EEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEe--------cccccCCccccEEEEEcCCCCEEEEEccCC
Confidence            478899999999998 54    22456778999999999999        77    8   99999999999999999887


Q ss_pred             cc-----cceeeccc----ccceeeeEee----ecCCe-EEecCCceeEEEEEec-------------------------
Q 048511           70 GS-----SANTQSTY----RKEVISLASY----IEGPV-LVAGSSSYQVSVESLL-------------------------  110 (351)
Q Consensus        70 ~~-----~~~~~~~~----~~~~~~~~~~----~~~~~-l~~~~~~~~~~~~~~~-------------------------  110 (351)
                      ..     ........    ...+.++.|+    +++.. +++++.++.+.++...                         
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (397)
T 1sq9_A          102 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  181 (397)
T ss_dssp             TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             cccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc
Confidence            65     33333222    4688999999    99999 9999888888776432                         


Q ss_pred             -cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc---ccceEEEEEcCC
Q 048511          111 -IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS---ALGFYGGHWSPD  186 (351)
Q Consensus       111 -~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~  186 (351)
                       ..|...|.+++|+      +++ +      |++++.|+.|++||++.  +..+..+..  ...|   ...|.+++|+|+
T Consensus       182 ~~~~~~~i~~~~~~------~~~-~------l~~~~~dg~i~i~d~~~--~~~~~~~~~--~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          182 PMTPSQFATSVDIS------ERG-L------IATGFNNGTVQISELST--LRPLYNFES--QHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             SSSSCCCCCEEEEC------TTS-E------EEEECTTSEEEEEETTT--TEEEEEEEC--CC---CCCCCEEEEEECSS
T ss_pred             ccCCCCCceEEEEC------CCc-e------EEEEeCCCcEEEEECCC--CceeEEEec--cccccccCCccceEEECCC
Confidence             2267789999999      677 8      99999999999999998  666666651  0116   788999999999


Q ss_pred             CCEEEEEeeC---CeEEEEEcccCcccCccccccccc-------------ccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          187 GRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSG-------------HFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       187 ~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      +++|++++.|   +.|++||+++.     +++..+..             |...|.+++|+|++++|++++.|+.|++||
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFG-----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTC-----CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEecCCCCceEEEEECCCC-----cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999999   99999999886     45677777             999999999999999999999999999999


Q ss_pred             CCCccccccCccceEEecccc------cc---------------ccceeEEEEeeeCCC----------cEEEEecCCCe
Q 048511          251 PWKNVASLMGENSWHEVARPQ------VH---------------GHDINCVTIIQGKGN----------HRFVSGADEKV  299 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~~~~~----------~~l~s~~~dg~  299 (351)
                      +++.+          .+..+.      .|               ...|++++|+|  ++          .+|++++.||.
T Consensus       320 ~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          320 VKTKE----------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--KGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             TTTTE----------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC--TTTSBSTTCTTSCEEEEEETTTE
T ss_pred             cCCCc----------eeEEEecccCcccchhhhhccccccccccCCceeEEEecc--ccccccccccccceEEEecCCCc
Confidence            98876          333333      45               88899999999  76          79999999999


Q ss_pred             EEEEecC
Q 048511          300 ARVFEAP  306 (351)
Q Consensus       300 v~vw~~~  306 (351)
                      |++|++.
T Consensus       388 i~iw~~~  394 (397)
T 1sq9_A          388 IRWFREA  394 (397)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcC
Confidence            9999976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-37  Score=263.77  Aligned_cols=252  Identities=24%  Similarity=0.304  Sum_probs=201.6

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecc-cccceeeeEeeecCCeEE
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQST-YRKEVISLASYIEGPVLV   96 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~   96 (351)
                      ..+..+.+|.+.|++++|+        ++  +|++|+.|++|++||+..+..  ....... +...+.+++|+|++.+|+
T Consensus         5 ~~~~~~~~h~~~v~~~~~s--------~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la   74 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFS--------QG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA   74 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEE--------TT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred             ccceeeccCCCceeeeccC--------CC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence            5678899999999999999        55  999999999999999987532  2222223 667899999999999999


Q ss_pred             ecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC--
Q 048511           97 AGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT--  159 (351)
Q Consensus        97 ~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--  159 (351)
                      +++.++.+++|..               +.+|...|.+++|+      +++++      |++|+.|++|++||++...  
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s------p~g~~------las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS------NDGYY------LATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC------TTSCE------EEEEETTSCEEEEECCTTCCC
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC------CCCCE------EEEEeCCCEEEEEeccCCCCC
Confidence            9999988877643               56899999999999      78889      9999999999999995421  


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC--CCEE
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS--SDYL  237 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l  237 (351)
                      ...+..+.     .|...|.+++|+|++.+|++++.|++|++||..++.   +.++..+.+|...|.+++|+|+  +.+|
T Consensus       143 ~~~~~~~~-----~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          143 YECISVLQ-----EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CEEEEEEC-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             eEEEEEec-----cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            23333333     788899999999999999999999999999987653   2457788899999999999998  6789


Q ss_pred             EEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++++.|++|++||+.......  ...+.....+.. |...|++++|++  + .+|++++.||.|+||+..
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~--~-~~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDEDD--QQEWVCEAILPDVHKRQVYNVAWGF--N-GLIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTTS--CEEEEEEEECCSCCSSCEEEEEECT--T-SCEEEEETTSCEEEEEEE
T ss_pred             EEEeCCCeEEEEEecCCCccc--cceeEEeeecccccccceEEEEEcC--C-CEEEEEeCCCEEEEEEcC
Confidence            999999999999987543110  112334444443 888999999997  4 489999999999999975

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=280.87  Aligned_cols=278  Identities=12%  Similarity=0.069  Sum_probs=207.3

Q ss_pred             CCCCCceEEEEEccCCCce--EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-----
Q 048511            1 MGGLDNKIHLYRGQRTGKF--VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-----   73 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-----   73 (351)
                      +|+.|++|+||++.. ++.  .....+.+|.+.|++|+|+|.....  +++.+||+++.||+|++||+..+....     
T Consensus       178 S~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~--~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          178 KEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCHAP--HLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             ----CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCCCS--SSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             cCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCCCC--CCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            478999999999987 543  2234577889999999999210000  236799999999999999998664320     


Q ss_pred             -----eeecccccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccceEEE--EecCCCCCCCCC-cccC
Q 048511           74 -----NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWVYSV--QWEPPSTAPSDG-VSCQ  136 (351)
Q Consensus        74 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v~~l--~~~p~~~~~~~~-~~~~  136 (351)
                           .....+...+.+++|++++ .|++|+.++.+.+|..         +.+|...|.++  .|+      +++ .+  
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s------~~g~~~--  325 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS------DFEDTV--  325 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC------TTSCCE--
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC------CCCCeE--
Confidence                 1223345678899998764 7999999999987753         56799999999  456      676 78  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                          |++|+.|++|+|||+++  +.....+.     .|.  ..|.+++|+|+++.+++++.|++|++||+++.     .+
T Consensus       326 ----laS~S~D~tvklWD~~~--~~~~~~~~-----~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-----~~  389 (524)
T 2j04_B          326 ----VSTVAVDGYFYIFNPKD--IATTKTTV-----SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-----FA  389 (524)
T ss_dssp             ----EEEEETTSEEEEECGGG--HHHHCEEE-----EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-----TC
T ss_pred             ----EEEeccCCeEEEEECCC--CCcccccc-----cccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-----cc
Confidence                99999999999999998  65554443     222  24789999999999999999999999999886     45


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc------------------C------------cc--
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------------------G------------EN--  262 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------~------------~~--  262 (351)
                      +..+.+|.+.|++|+|+|++++|++|+.|++|++||+........                  .            ..  
T Consensus       390 ~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~  469 (524)
T 2j04_B          390 VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPL  469 (524)
T ss_dssp             CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-
T ss_pred             ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceeccc
Confidence            677889999999999999999999999999999999754321100                  0            00  


Q ss_pred             --ceEEeccccccccceeEEEEeeeCC---CcEEEEecCCCeEEEEecCch
Q 048511          263 --SWHEVARPQVHGHDINCVTIIQGKG---NHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       263 --~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~~  308 (351)
                        ....+..+.+|...|++++|+|  +   +.++|+|+.||.|+||++.++
T Consensus       470 ~~~g~~~~~l~gh~~~V~~Vafsp--~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          470 TVNDVSKAKIDAHGINITCTKWNE--TSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ------------CCCSCCCEEECC--STTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ccCCcceeeecCCCceEEEEECCC--CCCccHHHHhhccCceEEEEEcccc
Confidence              0112334556888899999999  6   459999999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-36  Score=257.79  Aligned_cols=257  Identities=21%  Similarity=0.343  Sum_probs=213.7

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +....++.+|.+.|++++|+        +++++|++++.||.|++|++.+++..... ..+...+.+++|+|+++.++++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s--------~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFS--------PNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSA   83 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEEC--------CCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCCCCEEEEE
Confidence            46677899999999999999        88999999999999999999887655433 3456678999999999999999


Q ss_pred             CCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511           99 SSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus        99 ~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      +.++.++++.        .+.+|...|.+++|+      +++++      |++++.|+.|++||+++  +..+..+.   
T Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~s~~~d~~i~iwd~~~--~~~~~~~~---  146 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN------PQSNL------IVSGSFDESVRIWDVKT--GKCLKTLP---  146 (312)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEETTT--CCEEEEEC---
T ss_pred             CCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc------CCCCE------EEEEeCCCcEEEEECCC--CEEEEEec---
Confidence            9999887764        467899999999999      78888      99999999999999998  66666554   


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                        .|...|.+++|+|+++++++++.|+.|++||+++++     .+..+ ..+...+..++|+|++++|++++.|+.|++|
T Consensus       147 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          147 --AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  219 (312)
T ss_dssp             --CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             --CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence              678899999999999999999999999999998863     33333 4466789999999999999999999999999


Q ss_pred             cCCCccccccCccceEEeccccccccceeE--EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecccc
Q 048511          250 APWKNVASLMGENSWHEVARPQVHGHDINC--VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATFQ  319 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~  319 (351)
                      |+++++          .+..+..|.....+  ..+++ .++.+|++|+.||.|++||+. ++.++.+.+|...
T Consensus       220 d~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~  281 (312)
T 4ery_A          220 DYSKGK----------CLKTYTGHKNEKYCIFANFSV-TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV  281 (312)
T ss_dssp             ETTTTE----------EEEEECSSCCSSSCCCEEEEC-SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ECCCCc----------EEEEEEecCCceEEEEEEEEe-CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc
Confidence            998876          44444555544332  33443 378899999999999999987 7777777776543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-36  Score=259.10  Aligned_cols=270  Identities=17%  Similarity=0.229  Sum_probs=212.5

Q ss_pred             CCCCCceEEEEEccCCC--ceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTG--KFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      ||+.||+|+|||+....  ...+...+.+|...|++++|+        +++++|++++.|+.|++|+........... .
T Consensus        56 S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s--------~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~-~  126 (340)
T 4aow_A           56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS--------SDGQFALSGSWDGTLRLWDLTTGTTTRRFV-G  126 (340)
T ss_dssp             EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC--------CCCCEEEEEcccccceEEeecccceeeeec-C
Confidence            57899999999987621  124667889999999999999        889999999999999999998765544332 3


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .........+.+++..+++++.++.+.++.         ...+|...+.+++|++..    ...+      +++++.|+.
T Consensus       127 ~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~------~~s~~~d~~  196 (340)
T 4aow_A          127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS----SNPI------IVSCGWDKL  196 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS----SSCE------EEEEETTSC
T ss_pred             CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC----CCcE------EEEEcCCCE
Confidence            345667778889999999998888776653         356788999999999531    2345      889999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |++||++.  +.....+.     .|...|.+++|+|++++|++++.|+.|++||+++.     .++..+.. ...|.+++
T Consensus       197 i~i~d~~~--~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-----~~~~~~~~-~~~v~~~~  263 (340)
T 4aow_A          197 VKVWNLAN--CKLKTNHI-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-----KHLYTLDG-GDIINALC  263 (340)
T ss_dssp             EEEEETTT--TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEEC-SSCEEEEE
T ss_pred             EEEEECCC--CceeeEec-----CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----ceeeeecC-CceEEeee
Confidence            99999998  76666654     78889999999999999999999999999999886     44555554 46799999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |+|++.+ ++++.|+.|++||++....... ............|...|++++|+|  ++++|++|+.||.|+|||++
T Consensus       264 ~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~--dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          264 FSPNRYW-LCAATGPSIKIWDLEGKIIVDE-LKQEVISTSSKAEPPQCTSLAWSA--DGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ECSSSSE-EEEEETTEEEEEETTTTEEEEE-ECCC-------CCCCCEEEEEECT--TSSEEEEEETTSCEEEEEEE
T ss_pred             cCCCCce-eeccCCCEEEEEECCCCeEEEe-ccccceeeeccCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEeCC
Confidence            9998764 5566799999999987652110 000011123346788899999999  99999999999999999976

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-36  Score=285.60  Aligned_cols=264  Identities=20%  Similarity=0.261  Sum_probs=212.7

Q ss_pred             CCCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      ||+.|++|++|++.....  -.....+.+|...|++++|+        +++++|+||+.|++|++||+.++...... ..
T Consensus       400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--------~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~  470 (694)
T 3dm0_A          400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS--------SDGQFALSGSWDGELRLWDLAAGVSTRRF-VG  470 (694)
T ss_dssp             EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEE-EC
T ss_pred             EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC--------CCCCEEEEEeCCCcEEEEECCCCcceeEE-eC
Confidence            578999999999876221  14556789999999999999        88999999999999999999987665443 34


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      +...+.+++|++++..+++++.++.+++|..           ..+|...|.+++|+|..    ....      |++++.|
T Consensus       471 h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~------l~s~s~d  540 (694)
T 3dm0_A          471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT----LQPT------IVSASWD  540 (694)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS----SSCE------EEEEETT
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC----Ccce------EEEEeCC
Confidence            5678999999999999999999999988753           24688899999999521    1246      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      ++|++||++.  +.....+.     .|...|.+++|+|++++|++++.|+.|++||++++     +.+..+. +...|.+
T Consensus       541 ~~v~vwd~~~--~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-----~~~~~~~-~~~~v~~  607 (694)
T 3dm0_A          541 KTVKVWNLSN--CKLRSTLA-----GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-----KKLYSLE-ANSVIHA  607 (694)
T ss_dssp             SCEEEEETTT--CCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-----EEEECCB-CSSCEEE
T ss_pred             CeEEEEECCC--CcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----ceEEEec-CCCcEEE
Confidence            9999999998  66666554     78899999999999999999999999999999887     3455554 4467999


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc----------------ccccccceeEEEEeeeCCCcEE
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----------------PQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                      ++|+|++.+|++++ |+.|+|||++++....       .+..                ...+...+++++|+|  ++.+|
T Consensus       608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp--dg~~l  677 (694)
T 3dm0_A          608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIVE-------DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA--DGSTL  677 (694)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEE-------EECCCCC----------------CCCCEEEEEECT--TSSEE
T ss_pred             EEEcCCCcEEEEEc-CCCEEEEECCCCCChh-------hhccccccccccccccccccCCceeEEeeeEEEcC--CCCEE
Confidence            99999998887765 6679999998876211       1110                001112378899999  99999


Q ss_pred             EEecCCCeEEEEecC
Q 048511          292 VSGADEKVARVFEAP  306 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~  306 (351)
                      ++|+.||.|+||++.
T Consensus       678 ~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          678 FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEcCCCeEEEEecc
Confidence            999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-36  Score=260.34  Aligned_cols=258  Identities=17%  Similarity=0.191  Sum_probs=220.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++||+.+ +  ..+..+.+|.+.|++++|+        +++++|++++.||.|++||+.+++......  ..
T Consensus        49 ~~~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~  115 (369)
T 3zwl_B           49 SCSKDSSASVWYSLN-G--ERLGTLDGHTGTIWSIDVD--------CFTKYCVTGSADYSIKLWDVSNGQCVATWK--SP  115 (369)
T ss_dssp             EEESSSCEEEEETTT-C--CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEE--CS
T ss_pred             EEeCCCEEEEEeCCC-c--hhhhhhhhcCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCcEEEEee--cC
Confidence            467899999999988 6  4567889999999999999        889999999999999999999887766555  55


Q ss_pred             cceeeeEeeecCCeEEecCCc-----eeEEEEEec-------------------ccccc--ceEEEEecCCCCCCCCCcc
Q 048511           81 KEVISLASYIEGPVLVAGSSS-----YQVSVESLL-------------------IGHED--WVYSVQWEPPSTAPSDGVS  134 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~-------------------~~h~~--~v~~l~~~p~~~~~~~~~~  134 (351)
                      ..+.++.|++++..++++..+     +.+.++..-                   ..|..  .+.+++|+      +++++
T Consensus       116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  189 (369)
T 3zwl_B          116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS------TKGKY  189 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC------GGGCE
T ss_pred             CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc------CCCCE
Confidence            688999999999999998877     777666532                   23333  89999999      78888


Q ss_pred             cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                            |++++.|+.|++||++.. ......+.     .|...|.+++|+|++++|++++.|+.|++||+++.     ..
T Consensus       190 ------l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~  252 (369)
T 3zwl_B          190 ------IIAGHKDGKISKYDVSNN-YEYVDSID-----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-----QV  252 (369)
T ss_dssp             ------EEEEETTSEEEEEETTTT-TEEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CE
T ss_pred             ------EEEEcCCCEEEEEECCCC-cEeEEEEe-----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-----ce
Confidence                  999999999999999862 23344444     67889999999999999999999999999999886     34


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCC--------------cEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--------------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      +..+. +...+..++|+|+++++++++.++              .+++||...++          .+..+..|...|+++
T Consensus       253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~v~~~  321 (369)
T 3zwl_B          253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE----------EIGRVQGHFGPLNTV  321 (369)
T ss_dssp             EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC----------EEEEEECCSSCEEEE
T ss_pred             eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc----------chhheecccCcEEEE
Confidence            55554 778899999999999999999888              89999998876          556667899999999


Q ss_pred             EEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          281 TIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       281 ~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      +|+|  ++.+|++++.||.|++|+++.
T Consensus       322 ~~s~--~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          322 AISP--QGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EECT--TSSEEEEEETTSEEEEEEECH
T ss_pred             EECC--CCCEEEEEcCCCeEEEEECcc
Confidence            9999  999999999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.5e-37  Score=263.02  Aligned_cols=246  Identities=17%  Similarity=0.151  Sum_probs=193.9

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-------c---ccceeecccccceeeeEeeecCCeE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-------G---SSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      ..|...|.+++|+        ++|++|++++ |+++++||....       .   ............+.+++|++++ .+
T Consensus        27 ~~~~~~v~~~~fs--------~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           27 ACMERQLEAARYR--------SDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             SSCCSEEEEEEEC--------TTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             ccccCCEEEEEEC--------CCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            3577889999999        8899999888 778888874211       0   0111111224568899999986 56


Q ss_pred             EecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           96 VAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        96 ~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                      ++++.++.+++|..            +.+|.+.|++++|+      +++++      |++|+.|++|++||+++  +..+
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s------pdg~~------l~sgs~d~~i~iwd~~~--~~~~  162 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL------SSGTQ------AVSGSKDICIKVWDLAQ--QVVL  162 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC------CCCCE------EEEEeCCCeEEEEECCC--CcEE
Confidence            67888888888753            34799999999999      78999      99999999999999998  7777


Q ss_pred             EEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCccccccc--ccccccEEEEEeecC-CCEEEE
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVP--SGHFAAVMDISWSRS-SDYLLS  239 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~-~~~l~s  239 (351)
                      ..+.     +|...|.+++|+|++. +|++++.|++|++||+++++     +...+  ..+...+.+++|+|+ +++|++
T Consensus       163 ~~~~-----~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          163 SSYR-----AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EEEC-----CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             EEEc-----CcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEE
Confidence            7665     8999999999999885 78999999999999998873     34443  345667999999995 578899


Q ss_pred             EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCchhhhceeecc
Q 048511          240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPLSFLKTLNHAT  317 (351)
Q Consensus       240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~  317 (351)
                      |+.|+.|+|||+++++          .+..+.+|...|++++|+|  ++ .+|++|+.|+.|+|||+....+..+.+|.
T Consensus       233 g~~dg~v~~wd~~~~~----------~~~~~~~h~~~v~~v~fsp--~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~  299 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTS----------CVLSSAVHSQCVTGLVFSP--HSVPFLASLSEDCSLAVLDSSLSELFRSQAHR  299 (344)
T ss_dssp             EETTSEEEEEESCC------------CCEEEECCSSCEEEEEECS--SSSCCEEEEETTSCEEEECTTCCEEEEECCCS
T ss_pred             eccCCcEEEEECCCCc----------EEEEEcCCCCCEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC
Confidence            9999999999998876          5566778999999999999  66 68999999999999998844444455554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.1e-37  Score=263.24  Aligned_cols=242  Identities=16%  Similarity=0.269  Sum_probs=190.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|++|+|||+.+ ++...+..+.+|.+.|++++|+    +.  .++++|+||+.|++|++||+.++...        
T Consensus        30 sgs~D~~v~lwd~~~-~~~~~~~~l~gH~~~V~~v~~~----~~--~~~~~l~s~s~D~~v~iWd~~~~~~~--------   94 (316)
T 3bg1_A           30 TCSSDRSVKIFDVRN-GGQILIADLRGHEGPVWQVAWA----HP--MYGNILASCSYDRKVIIWREENGTWE--------   94 (316)
T ss_dssp             EEETTTEEEEEEEET-TEEEEEEEEECCSSCEEEEEEC----CG--GGSSCEEEEETTSCEEEECCSSSCCC--------
T ss_pred             EEeCCCeEEEEEecC-CCcEEEEEEcCCCccEEEEEeC----CC--CCCCEEEEEECCCEEEEEECCCCcce--------
Confidence            478999999999988 6555678899999999999998    21  24789999999999999999865321        


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                               ....+.+|...|.+++|+|.    .++.+      |++|+.|++|++||++.  +
T Consensus        95 -------------------------~~~~~~~h~~~V~~v~~~p~----~~g~~------lasgs~D~~i~lwd~~~--~  137 (316)
T 3bg1_A           95 -------------------------KSHEHAGHDSSVNSVCWAPH----DYGLI------LACGSSDGAISLLTYTG--E  137 (316)
T ss_dssp             -------------------------EEEEECCCSSCCCEEEECCT----TTCSC------EEEECSSSCEEEEEECS--S
T ss_pred             -------------------------EEEEccCCCCceEEEEECCC----CCCcE------EEEEcCCCCEEEEecCC--C
Confidence                                     11235679999999999952    12678      99999999999999987  3


Q ss_pred             ceEEEEEeccccccccceEEEEEcCC-----------------CCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPD-----------------GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~-----------------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      .....  ......|...+.+++|+|+                 +++|++++.|+.|++||++....  +.++..+.+|..
T Consensus       138 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~~l~~h~~  213 (316)
T 3bg1_A          138 GQWEV--KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQKLEAHSD  213 (316)
T ss_dssp             SCEEE--CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEECCBCCSS
T ss_pred             CCcce--eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceeeecccCCC
Confidence            21111  1223477888999999997                 46899999999999999965321  235677889999


Q ss_pred             cEEEEEeecCC----CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          224 AVMDISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       224 ~v~~v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      .|.+++|+|++    .+|++++.|++|+|||+......     .+ ....+..|...|++++|+|  ++.+|++++.|+.
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~-----~~-~~~~~~~~~~~v~~v~~sp--~g~~las~~~D~~  285 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN-----TW-SPKLLHKFNDVVWHVSWSI--TANILAVSGGDNK  285 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC-----CC-BCCEEEECSSCEEEEEECT--TTCCEEEEESSSC
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc-----ch-hhhhhhcCCCcEEEEEEcC--CCCEEEEEcCCCe
Confidence            99999999986    78999999999999998763210     00 1112235677899999999  9999999999999


Q ss_pred             EEEEecC
Q 048511          300 ARVFEAP  306 (351)
Q Consensus       300 v~vw~~~  306 (351)
                      |+||+..
T Consensus       286 v~lw~~~  292 (316)
T 3bg1_A          286 VTLWKES  292 (316)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.3e-37  Score=273.98  Aligned_cols=264  Identities=15%  Similarity=0.092  Sum_probs=200.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee-ccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ-STY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~   79 (351)
                      +|+.||+|+|||+.. ++......+.+|.+.|++|+|+    |   .++.+|+||+.||+|++||+.+........ ...
T Consensus       137 sGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~----p---~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  208 (435)
T 4e54_B          137 VGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFN----P---LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI  208 (435)
T ss_dssp             EEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEEC----S---SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC
T ss_pred             EEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEe----C---CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC
Confidence            478999999999987 5555667788999999999999    2   267899999999999999998654322111 122


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEE
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~  151 (351)
                      ...+.++++++++.++++++.++.+.++.       .+.+|...|.+++|+|      ++ .+      |++++.|+.|+
T Consensus       209 ~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p------~~~~~------~~s~s~d~~v~  276 (435)
T 4e54_B          209 NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNP------CCDWF------LATASVDQTVK  276 (435)
T ss_dssp             SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECT------TCSSE------EEEEETTSBCC
T ss_pred             CccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecC------CCceE------EEEecCcceee
Confidence            33567899999999999999999988775       3678999999999994      44 46      88999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc------cE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA------AV  225 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~------~v  225 (351)
                      +||++..  .....+  .....|...|.+++|+|++++|++++.|+.|++||+.+..     ....+..|..      .+
T Consensus       277 iwd~~~~--~~~~~~--~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          277 IWDLRQV--RGKASF--LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-----CPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             EEETTTC--CSSSCC--SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-----SEEEECCCCCCCCSSSCC
T ss_pred             EEecccc--cccceE--EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc-----cceEEeccccccccccee
Confidence            9999873  222221  1123688899999999999999999999999999998763     2333322221      22


Q ss_pred             EEEEeecCCCEEEEEe------------CCCcEEEEcCCCccccccCccceEEecc-ccccccceeEE-EEeeeCCCcEE
Q 048511          226 MDISWSRSSDYLLSVS------------HDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCV-TIIQGKGNHRF  291 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-~~~~~~~~~~l  291 (351)
                      ....|+|++.+++++.            .++.|++||..+++          .+.. ...|...|.++ +|+|  ++.+|
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~----------~~~~l~~~~~~~v~s~~~fsp--dg~~l  415 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK----------MMCQLYDPESSGISSLNEFNP--MGDTL  415 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC----------EEEEECCSSCCCCCCEEEECT--TSSCE
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc----------EEEEEeCCCCCcEEEEEEECC--CCCEE
Confidence            3345666666655543            34679999998886          3332 33677778887 6999  89999


Q ss_pred             EEecCCCeEEEEecC
Q 048511          292 VSGADEKVARVFEAP  306 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~  306 (351)
                      ++|+ |+.|+||+++
T Consensus       416 asg~-d~~i~iW~~~  429 (435)
T 4e54_B          416 ASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEC-SSEEEECCCC
T ss_pred             EEEc-CCcEEEEECC
Confidence            9886 7899999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-36  Score=266.63  Aligned_cols=259  Identities=17%  Similarity=0.282  Sum_probs=210.5

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      +.|++|+|||+.+ ++...+..+.+|...|++|+|+        +++++||+|+.||+|++||+.+++.+.... .+...
T Consensus       122 gld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fs--------pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~  191 (420)
T 4gga_A          122 ALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWI--------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSAR  191 (420)
T ss_dssp             EETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSC
T ss_pred             EeCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEEC--------CCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCc
Confidence            4589999999999 8776667778899999999999        889999999999999999999887665443 33344


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEE---------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVE---------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      +.+  ++.++..+++++.++.+..+         ..+.+|...+..+.|+      +++.+      +++++.|+.+++|
T Consensus       192 v~~--~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~------~~g~~------l~s~~~D~~v~i~  257 (420)
T 4gga_A          192 VGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------PDGRH------LASGGNDNLVNVW  257 (420)
T ss_dssp             EEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEE
T ss_pred             eEE--EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec------CCCCe------eeeeeccccceEE
Confidence            444  45578899999888877654         3467899999999999      78888      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEE--eeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAH--GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~--~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      |....+......   .....+...|.+++|+|.+. .++++  +.|+.|++||+.++     .+...+.. ...+.++.|
T Consensus       258 ~~~~~~~~~~~~---~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~~-~~~v~~~~~  328 (420)
T 4gga_A          258 PSAPGEGGWVPL---QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDA-HSQVCSILW  328 (420)
T ss_dssp             ESSCCSSCSCCS---EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEEC-SSCEEEEEE
T ss_pred             eeccccccceee---eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----ccceeecc-ccceeeeee
Confidence            998733221111   11236788899999999765 45543  47899999999987     44555554 457889999


Q ss_pred             ecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          231 SRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       231 sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|+++.+++++  .|+.|+|||+.+++          .+..+.+|...|++++|+|  ++.+|++|+.|++|+|||+.
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~----------~v~~l~gH~~~V~~l~~sp--dg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMA----------KVAELKGHTSRVLSLTMSP--DGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCC----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTTEEEEECCS
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEECC
Confidence            99999988765  79999999998877          6777789999999999999  99999999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-36  Score=262.07  Aligned_cols=246  Identities=16%  Similarity=0.156  Sum_probs=197.1

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeC------CCcEEEEecCCCcccce---eecccccceeeeEeeecCCeE
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ------DKVIRIWKLALRGSSAN---TQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~------dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      ..+|...|++|+|+        |+|++||+++.      |+.|++|+..++.....   ....+...+.+++|+|++.++
T Consensus        38 p~~H~~~V~~v~fS--------pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l  109 (357)
T 4g56_B           38 PACMEVQIGAVRYR--------RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL  109 (357)
T ss_dssp             --CCCSEEEEEEEC--------SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE
T ss_pred             cccccCCEEEEEEC--------CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE
Confidence            35799999999999        89999999997      77899999877654322   223345678999999998766


Q ss_pred             EecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           96 VAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        96 ~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                      ++ +.++.+++|..            ..+|...|++++|+      +++++      |++|+.|+.|++||+++  +..+
T Consensus       110 ~~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s------pdg~~------l~sgs~dg~v~iwd~~~--~~~~  174 (357)
T 4g56_B          110 VA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF------SDGTQ------AVSGGKDFSVKVWDLSQ--KAVL  174 (357)
T ss_dssp             EE-ETTSCEEEC--------CCCCEEECCCSSCEEEEEEC------SSSSE------EEEEETTSCEEEEETTT--TEEE
T ss_pred             EE-ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEEC------CCCCE------EEEEeCCCeEEEEECCC--CcEE
Confidence            54 55677776642            33789999999999      78899      99999999999999998  7777


Q ss_pred             EEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEe
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVS  241 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~  241 (351)
                      ..+.     .|...|.+++|+|++. ++++++.|+.|++||+++++.   .....+..|...+.+++|+|+ +.+|++|+
T Consensus       175 ~~~~-----~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la~g~  246 (357)
T 4g56_B          175 KSYN-----AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFACGD  246 (357)
T ss_dssp             EEEC-----CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred             EEEc-----CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccccchhhhhcccceEEEee
Confidence            6665     7889999999999875 789999999999999988742   222334457778999999997 46789999


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecC-chhhhce
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      .|+.|++||+++++          .+..+.+|...|++++|+|  ++ .+|++|+.|+.|+|||++ ++.++.+
T Consensus       247 ~d~~i~~wd~~~~~----------~~~~~~~~~~~v~~l~~sp--~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          247 ETGNVSLVNIKNPD----------SAQTSAVHSQNITGLAYSY--HSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             SSSCEEEEESSCGG----------GCEEECCCSSCEEEEEECS--SSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cccceeEEECCCCc----------EeEEEeccceeEEEEEEcC--CCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            99999999998877          4455668889999999999  55 689999999999999987 5555443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=267.95  Aligned_cols=264  Identities=14%  Similarity=0.192  Sum_probs=218.1

Q ss_pred             CCCceEEEEEccCCCceE-EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC---cccceeecc
Q 048511            3 GLDNKIHLYRGQRTGKFV-RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR---GSSANTQST   78 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~---~~~~~~~~~   78 (351)
                      +.|+.|+|||+.+ ++.. .+..+ .|...|++++|+        +++++|++++.||.|++||+...   .........
T Consensus        42 ~~d~~v~iw~~~~-~~~~~~~~~~-~~~~~v~~~~~s--------~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~  111 (416)
T 2pm9_A           42 STDSSLELWSLLA-ADSEKPIASL-QVDSKFNDLDWS--------HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN  111 (416)
T ss_dssp             CCCCCCEEEESSS-GGGCSCSCCC-CCSSCEEEEEEC--------SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred             CCCCeEEEEEccC-CCCCcEEEEE-ecCCceEEEEEC--------CCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence            7899999999987 4322 22333 589999999999        88999999999999999999872   223333345


Q ss_pred             cccceeeeEeeec-CCeEEecCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCC-CcccCCCc
Q 048511           79 YRKEVISLASYIE-GPVLVAGSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSD-GVSCQQPS  139 (351)
Q Consensus        79 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~-~~~~~~~~  139 (351)
                      +...+.++.|+|+ +.++++++.++.+.++..                 +.+|...|.+++|+      ++ +.+     
T Consensus       112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~-----  180 (416)
T 2pm9_A          112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN------QSLAHV-----  180 (416)
T ss_dssp             SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEEC------SSCTTE-----
T ss_pred             CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeC------CCCCcE-----
Confidence            5678899999998 899999998888876643                 23578899999999      55 677     


Q ss_pred             eeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCCC-CEEEEEeeCC---eEEEEEcccCcccCccc
Q 048511          140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPDG-RSILAHGYGG---AFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~dg---~i~~~d~~~~~~~~~~~  214 (351)
                       |++++.|+.|++||++.  +..+..+.... ...|...|.+++|+|++ .++++++.|+   .|++||+++..    .+
T Consensus       181 -l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~  253 (416)
T 2pm9_A          181 -FASAGSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TP  253 (416)
T ss_dssp             -EEEESSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SC
T ss_pred             -EEEEcCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CC
Confidence             99999999999999998  66666554210 11226789999999997 6899999998   99999998863    45


Q ss_pred             ccccc-cccccEEEEEeec-CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC-cEE
Q 048511          215 QKVPS-GHFAAVMDISWSR-SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN-HRF  291 (351)
Q Consensus       215 ~~~~~-~~~~~v~~v~~sp-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l  291 (351)
                      +..+. +|...|.+++|+| ++++|++++.|+.|++||+++++          .+..+..|...|++++|+|  ++ .+|
T Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~----------~~~~~~~~~~~v~~~~~s~--~~~~~l  321 (416)
T 2pm9_A          254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE----------QLSQFPARGNWCFKTKFAP--EAPDLF  321 (416)
T ss_dssp             SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC----------EEEEEECSSSCCCCEEECT--TCTTEE
T ss_pred             cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc----------cceeecCCCCceEEEEECC--CCCCEE
Confidence            67777 8999999999999 89999999999999999998876          5666678889999999999  77 899


Q ss_pred             EEecCCCeEEEEecC
Q 048511          292 VSGADEKVARVFEAP  306 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~  306 (351)
                      ++++.|+.|++|++.
T Consensus       322 ~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQ  336 (416)
T ss_dssp             EECCSSSEEEEEESC
T ss_pred             EEEecCCcEEEEEcc
Confidence            999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=254.95  Aligned_cols=259  Identities=17%  Similarity=0.269  Sum_probs=207.9

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      +.|++|+|||+++ ++......+.+|...|++++|+        +++++|++|+.||+|++||+.+++.+..... +  .
T Consensus        42 g~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~--------~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~-h--~  109 (318)
T 4ggc_A           42 ALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWI--------KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS-H--S  109 (318)
T ss_dssp             EETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEEEEEC-C--S
T ss_pred             EeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEEC--------CCCCEEEEEECCCcEEEeecCCceeEEEecC-c--c
Confidence            4589999999999 8766666677899999999999        8899999999999999999998877655442 2  2


Q ss_pred             eeeeEeeecCCeEEecCCceeEEE---------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSV---------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      .....++.++..++++..++.+..         ...+.+|...+.++.+.      +++++      |++++.|+.|++|
T Consensus       110 ~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~s~~~d~~i~iw  177 (318)
T 4ggc_A          110 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------PDGRH------LASGGNDNLVNVW  177 (318)
T ss_dssp             SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEEE
T ss_pred             ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc------CCCCE------EEEEecCcceeEE
Confidence            334456677888888887776644         34567899999999999      78888      9999999999999


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEE---EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI---LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l---~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      |+++.+........   ...+...|.+++++|++..+   ++++.++.|++||.+...      ......+...+..+.|
T Consensus       178 d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~------~~~~~~~~~~v~~~~~  248 (318)
T 4ggc_A          178 PSAPGEGGWVPLQT---FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CLSAVDAHSQVCSILW  248 (318)
T ss_dssp             ESSCBTTBSCCSEE---ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC------EEEEEECSSCEEEEEE
T ss_pred             ECCCCcccccceee---ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc------ccccccceeeeeeeee
Confidence            99873322111111   23567789999999976633   356678999999998753      2333446778999999


Q ss_pred             ecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          231 SRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       231 sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|++..+++++  .|+.|+|||+++++          .+..+.+|...|++++|+|  ++.+|++|+.||+|+|||+.
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~----------~~~~l~gH~~~V~~l~~sp--dg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMA----------KVAELKGHTSRVLSLTMSP--DGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCC----------EEEEECCCSSCEEEEEECT--TSSCEEEEETTTEEEEECCS
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEECC
Confidence            99999887654  79999999998887          6677789999999999999  99999999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-36  Score=262.60  Aligned_cols=279  Identities=13%  Similarity=0.132  Sum_probs=206.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-c-cceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-S-SANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~-~~~~~~~   78 (351)
                      +|+.||.|+|||+.+ +.+..+..+.+|.+.|++++|+        +++++|++++.|++|++||+.++. . .......
T Consensus        28 ~~~~d~~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~s--------~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~   98 (377)
T 3dwl_C           28 TTTATNQVELYEQDG-NGWKHARTFSDHDKIVTCVDWA--------PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR   98 (377)
T ss_dssp             CCCSSSCBCEEEEET-TEEEECCCBCCCSSCEEEEEEC--------TTTCCEEEEETTSSEEEC------CCCCEEECCC
T ss_pred             EecCCCEEEEEEccC-CceEEEEEEecCCceEEEEEEe--------CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc
Confidence            578999999999998 7667788899999999999999        889999999999999999999876 1 1222334


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEE-----------Eeccc-cccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVE-----------SLLIG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      +...+.++.|+|++..+++++.++.+.++           ..+.+ |...|.+++|+      +++++      |++++.
T Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~~~~~  166 (377)
T 3dwl_C           99 LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH------PNNVL------LAAGCA  166 (377)
T ss_dssp             CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC------TTSSE------EEEEES
T ss_pred             cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc------CCCCE------EEEEeC
Confidence            56788999999999999999988877653           34555 99999999999      78888      999999


Q ss_pred             CCeEEEEeccCCCcc------------eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccc
Q 048511          147 DKTMMIWQPEKTTGI------------WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       147 d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  214 (351)
                      |+.|++||++..+..            .... ..... .|...|.+++|+|++++|++++.|+.|++||+++++.. ...
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~~~  243 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT-VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP-PRA  243 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE-EEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC-EEE
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhh-hhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc-cee
Confidence            999999999642100            0111 11222 78889999999999999999999999999999887310 011


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc------C---c-----------------------c
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM------G---E-----------------------N  262 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~------~---~-----------------------~  262 (351)
                      +..+.+|...|.+++|+|++++|++++.++.+ +|+.........      .   .                       .
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS  322 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence            67888999999999999999999998766655 676652210000      0   0                       0


Q ss_pred             ceE----------EeccccccccceeEEEEeeeCCCc---EEEEecCCCeEEEEec
Q 048511          263 SWH----------EVARPQVHGHDINCVTIIQGKGNH---RFVSGADEKVARVFEA  305 (351)
Q Consensus       263 ~~~----------~~~~~~~~~~~i~~~~~~~~~~~~---~l~s~~~dg~v~vw~~  305 (351)
                      .+.          .......|...|+++++.+. ++.   .|++|+.||.|+|||+
T Consensus       323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~-~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAG-TPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             --------------CCCSSSCSSCEEEEEEEEE-ETTEEEEEEEEETTSEEEEECC
T ss_pred             cccchhhccccccccccCccccceeEEEeccCC-CCCceEEEEeecCCCcEEEecC
Confidence            000          00112248889999998771 223   6999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-35  Score=260.81  Aligned_cols=259  Identities=11%  Similarity=0.086  Sum_probs=206.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecc-
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQST-   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-   78 (351)
                      +|+.||.|+|||+.+ ++......+.+|.+.|.+++|+        + ++.+|++++.|+.|++||+... ........ 
T Consensus        91 s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~  160 (383)
T 3ei3_B           91 VGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFN--------QFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTD  160 (383)
T ss_dssp             EEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEE--------TTEEEEEEEEETTTEEEEEETTSC-EEEEEECCC
T ss_pred             EEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeC--------CCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccC
Confidence            477899999999998 6656555666899999999999        6 6899999999999999999853 33323222 


Q ss_pred             -cccceeeeEeeecCCeEEecCCceeEEEEE-------eccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCe
Q 048511           79 -YRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKT  149 (351)
Q Consensus        79 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~  149 (351)
                       ....+.+++|++++..+++++.++.+.++.       .+.+|...|.+++|+      +++. +      |++++.|+.
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~------~~~~~~------l~s~~~d~~  228 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFN------PRCDWL------MATSSVDAT  228 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEEC------SSCTTE------EEEEETTSE
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEEC------CCCCCE------EEEEeCCCE
Confidence             235688999999999999999999887664       466799999999999      6776 7      999999999


Q ss_pred             EEEEeccCCC--cceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----
Q 048511          150 MMIWQPEKTT--GIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----  221 (351)
Q Consensus       150 i~iwd~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----  221 (351)
                      |++||++..+  +..+..+      .|...|.+++|+| ++++|++++.|+.|++||+++.+     ....+.+|     
T Consensus       229 i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~  297 (383)
T 3ei3_B          229 VKLWDLRNIKDKNSYIAEM------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS-----KPDQIIIHPHRQF  297 (383)
T ss_dssp             EEEEEGGGCCSTTCEEEEE------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT-----SCSEEEECCBCCC
T ss_pred             EEEEeCCCCCcccceEEEe------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc-----ccccccccccccc
Confidence            9999999732  2233322      4778999999999 99999999999999999998763     23333322     


Q ss_pred             --c----------ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCC
Q 048511          222 --F----------AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKG  287 (351)
Q Consensus       222 --~----------~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  287 (351)
                        .          ..+..++|+|++++  +++.|+.|++||+.+++          .+..+..  |...+.+++|+|  +
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~----------~~~~l~~~~~~~~~~~~~~s~--~  363 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG----------LVHQLRDPNAAGIISLNKFSP--T  363 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC----------EEEEECBTTBCSCCCEEEECT--T
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc----------eeeeecCCCCCceEEEEEEec--C
Confidence              1          34455777777776  77899999999998887          3444444  456688889999  9


Q ss_pred             CcEEEEecCCCeEEEEecCc
Q 048511          288 NHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       288 ~~~l~s~~~dg~v~vw~~~~  307 (351)
                      +.+|++|+ |+.|++||++.
T Consensus       364 g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          364 GDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             SSEEEEEE-TTEEEEEECC-
T ss_pred             ccEEEEec-CCcEEEEecCC
Confidence            99999997 99999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-35  Score=261.31  Aligned_cols=275  Identities=19%  Similarity=0.220  Sum_probs=211.8

Q ss_pred             EEEEEccCCCce-EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-------
Q 048511            8 IHLYRGQRTGKF-VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY-------   79 (351)
Q Consensus         8 i~vw~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------   79 (351)
                      ..+|+....... ..+....+|.+.|++++|+        +++++||+++ |+++++|++.++..........       
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fs--------pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~  112 (393)
T 1erj_A           42 YILYNPALPREIDVELHKSLDHTSVVCCVKFS--------NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  112 (393)
T ss_dssp             EEEECTTSCCCEEEEEEEEEECSSCCCEEEEC--------TTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             EEEECCCCCcccCceeEEecCCCCEEEEEEEC--------CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccc
Confidence            447766552211 1122233699999999999        8899999977 7899999998877654432211       


Q ss_pred             ----------ccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           80 ----------RKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        80 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                                ...+.+++|+|+++.+++++.++.+++|.        .+.+|...|.+++|+      +++.+      |
T Consensus       113 ~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------p~~~~------l  180 (393)
T 1erj_A          113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF------PSGDK------L  180 (393)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------E
T ss_pred             cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc------CCCCE------E
Confidence                      11377999999999999999999887764        467899999999999      78888      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccc--
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP--  218 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--  218 (351)
                      ++++.|++|++||+++  +.....+.      +...+.+++|+| ++++|++++.|+.|++||++++.     .+..+  
T Consensus       181 ~s~s~d~~v~iwd~~~--~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~  247 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRT--GQCSLTLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDS  247 (393)
T ss_dssp             EEEETTSEEEEEETTT--TEEEEEEE------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC-
T ss_pred             EEecCCCcEEEEECCC--CeeEEEEE------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecc
Confidence            9999999999999998  66655543      445799999999 89999999999999999998763     23332  


Q ss_pred             -----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc--CccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          219 -----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM--GENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       219 -----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                           .+|...|.+++|+|++++|++++.|+.|++||++.......  ..........+.+|...|.+++|++  ++.+|
T Consensus       248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l  325 (393)
T 1erj_A          248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYI  325 (393)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG--GGCEE
T ss_pred             cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC--CCCEE
Confidence                 57899999999999999999999999999999976532110  0001112334567888899999999  89999


Q ss_pred             EEecCCCeEEEEecC-chhhhceeeccc
Q 048511          292 VSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      ++|+.|+.|++||+. ++.+..+.+|..
T Consensus       326 ~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          326 LSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence            999999999999987 777777777653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-35  Score=253.77  Aligned_cols=256  Identities=16%  Similarity=0.248  Sum_probs=213.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~   78 (351)
                      |+ ||.|++||+...+....+..+.  +|...|.+++|+        +++++|++++.|+.|++||+.+++... .....
T Consensus        69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--------TTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc--------CCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            45 9999999998732222333333  799999999999        889999999999999999998876322 22334


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      +...+.++.++++++.+++++.++.+.++.        .+.+|...|.+++|+      +++++      |++++.|+.|
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~dg~i  207 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------NDGTK------LWTGGLDNTV  207 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC------CCCCE------EEEEecCCcE
Confidence            456788999999999999999888886654        466799999999999      78888      9999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      ++||++.  +..+..+.      +...+.+++|+|+++++++++.++.|++||+++.+      ...+..|...|.+++|
T Consensus       208 ~~~d~~~--~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------~~~~~~~~~~v~~~~~  273 (337)
T 1gxr_A          208 RSWDLRE--GRQLQQHD------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLHLHESCVLSLKF  273 (337)
T ss_dssp             EEEETTT--TEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEECCCSSCEEEEEE
T ss_pred             EEEECCC--CceEeeec------CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------eEEEcCCccceeEEEE
Confidence            9999998  66555543      56679999999999999999999999999998863      3456789999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +|++++|++++.||.|++||+.+++          .+.. ..|...+++++|+|  ++.+|++++.||.|++|++
T Consensus       274 ~~~~~~l~~~~~dg~i~~~~~~~~~----------~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          274 AYCGKWFVSTGKDNLLNAWRTPYGA----------SIFQ-SKESSSVLSCDISV--DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCC----------EEEE-EECSSCEEEEEECT--TSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEecCCCcEEEEECCCCe----------EEEE-ecCCCcEEEEEECC--CCCEEEEecCCCeEEEEEE
Confidence            9999999999999999999998876          2221 24677899999999  8999999999999999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.4e-36  Score=255.07  Aligned_cols=223  Identities=22%  Similarity=0.245  Sum_probs=190.8

Q ss_pred             ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEE
Q 048511           18 KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLV   96 (351)
Q Consensus        18 ~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (351)
                      .+....++.+|.+.|++++|+        ++ +++|+||+.|++|++|++.......                       
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~--------~~~~~~l~s~s~D~~v~~W~~~~~~~~~-----------------------   54 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATS--------AGQPNLLLSASRDKTLISWKLTGDDQKF-----------------------   54 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEEC--------SSCTTEEEEEETTSEEEEEEEEEETTEE-----------------------
T ss_pred             EEEEEEEEccccceEEEEEcc--------CCCccEEEEecCCccEEEecCCCCCccc-----------------------
Confidence            456677899999999999999        54 4899999999999999986432211                       


Q ss_pred             ecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511           97 AGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL  176 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (351)
                             ......+.+|...|.+++|+      +++++      |++|+.|++|++||+++  ++.+..+.     +|..
T Consensus        55 -------~~~~~~~~~h~~~v~~~~~s------~dg~~------l~s~s~D~~v~~wd~~~--~~~~~~~~-----~h~~  108 (319)
T 3frx_A           55 -------GVPVRSFKGHSHIVQDCTLT------ADGAY------ALSASWDKTLRLWDVAT--GETYQRFV-----GHKS  108 (319)
T ss_dssp             -------EEEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSEEEEEETTT--TEEEEEEE-----CCSS
T ss_pred             -------cccceEEeCCcccEEEEEEC------CCCCE------EEEEeCCCEEEEEECCC--CCeeEEEc-----cCCC
Confidence                   01234578999999999999      78999      99999999999999998  77777666     8899


Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC------CCEEEEEeCCCcEEEEc
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS------SDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~------~~~l~s~~~dg~i~vwd  250 (351)
                      .|.+++|+|++.+|++++.|+.|++||++.      .++..+.+|...|.++.|+|.      +.+|++++.|+.|++||
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  182 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIKG------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN  182 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTS------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence            999999999999999999999999999976      456778899999999999985      44899999999999999


Q ss_pred             CCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          251 PWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      ++...          ....+.+|...|++++|+|  ++.+|++|+.||.|++||+. ++.+..+..
T Consensus       183 ~~~~~----------~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~  236 (319)
T 3frx_A          183 LNQFQ----------IEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLSA  236 (319)
T ss_dssp             TTTTE----------EEEEECCCCSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCcch----------hheeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            98765          4555678999999999999  99999999999999999987 656665554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=257.59  Aligned_cols=269  Identities=13%  Similarity=0.122  Sum_probs=210.8

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC---ccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI---SILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ||.|+|||+.+ ++...... .+|...|++++|+        ++   +.+|++++.||.|++||+.+++........+..
T Consensus        43 d~~v~iw~~~~-~~~~~~~~-~~~~~~v~~~~~~--------~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  112 (357)
T 3i2n_A           43 TGVIQLYEIQH-GDLKLLRE-IEKAKPIKCGTFG--------ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE  112 (357)
T ss_dssp             CEEEEEEEECS-SSEEEEEE-EEESSCEEEEECT--------TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS
T ss_pred             CcEEEEEeCCC-Ccccceee-ecccCcEEEEEEc--------CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc
Confidence            99999999998 65544333 3799999999999        55   699999999999999999988733334445566


Q ss_pred             ceeee------EeeecCCeEEecCCceeEEEEEe---------ccccc----cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           82 EVISL------ASYIEGPVLVAGSSSYQVSVESL---------LIGHE----DWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        82 ~~~~~------~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~----~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .+.++      ++++++..+++++.++.+.++..         +..|.    ..|.++.|.+.-.  +++++      |+
T Consensus       113 ~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~------l~  184 (357)
T 3i2n_A          113 IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN--QEERV------VC  184 (357)
T ss_dssp             CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC---CCCE------EE
T ss_pred             ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC--CCCCE------EE
Confidence            77777      45789999999999988877653         22223    3788888432111  68888      99


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC---CCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP---DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      +++.|+.|++||++.  +......      .+...|.+++|+|   ++.++++++.||.|++||+++.+     +...+.
T Consensus       185 ~~~~d~~i~i~d~~~--~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~  251 (357)
T 3i2n_A          185 AGYDNGDIKLFDLRN--MALRWET------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH-----PTKGFA  251 (357)
T ss_dssp             EEETTSEEEEEETTT--TEEEEEE------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE-----TTTEEE
T ss_pred             EEccCCeEEEEECcc--Cceeeec------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC-----ccccee
Confidence            999999999999998  5543332      5677899999999   89999999999999999998863     344433


Q ss_pred             -----cccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCcccccc---------CccceEEeccccccccceeEEEEee
Q 048511          220 -----GHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLM---------GENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       220 -----~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                           +|...|++++|+|+++ +|++++.||.|++||++.......         ....+..+..+..|...|++++|+|
T Consensus       252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence                 8999999999999998 899999999999999986542110         0012345666778999999999999


Q ss_pred             eCCCcEEE-EecCCCeEEEEecC
Q 048511          285 GKGNHRFV-SGADEKVARVFEAP  306 (351)
Q Consensus       285 ~~~~~~l~-s~~~dg~v~vw~~~  306 (351)
                        ++.+|+ +++.|+.|++|++.
T Consensus       332 --~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          332 --DKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             --SSTTEEEEEETTSEEEEEEEC
T ss_pred             --CCCeEEEEecCCCcEEEEECC
Confidence              888887 89999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=250.36  Aligned_cols=255  Identities=17%  Similarity=0.170  Sum_probs=213.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc--ceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS--ANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~--~~~~~~   78 (351)
                      +|+.||.|++||+.+ +  .....+..|...|.+++|+        +++++|++++.|+.|++|++......  ......
T Consensus        34 s~~~dg~v~vw~~~~-~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~  102 (313)
T 3odt_A           34 SVSRDGTVRLWSKDD-Q--WLGTVVYTGQGFLNSVCYD--------SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG  102 (313)
T ss_dssp             EEETTSEEEEEEESS-S--EEEEEEEECSSCEEEEEEE--------TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC
T ss_pred             EEEcCCcEEEEECCC-C--EEEEEeecCCccEEEEEEC--------CCCCEEEEecCCCeEEEEEeeecCCCCcccchhh
Confidence            478899999999987 6  4566788999999999999        88999999999999999999765422  222334


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEE------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      +...+.++.+  ++..+++++.++.+.++.      .+..|...+.++.|.|     ++++.      +++++.|+.|++
T Consensus       103 ~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~-----~~~~~------l~~~~~d~~i~i  169 (313)
T 3odt_A          103 HQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVS-----FSENK------FLTASADKTIKL  169 (313)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEE-----TTTTE------EEEEETTSCEEE
T ss_pred             cccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEcc-----CCCCE------EEEEECCCCEEE
Confidence            5567777777  678999999998887664      4567899999999995     47888      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||..    .....+.    ..+...+.+++|+|++. +++++.|+.|++||++++     +++..+.+|...|++++|+|
T Consensus       170 ~d~~----~~~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~  235 (313)
T 3odt_A          170 WQND----KVIKTFS----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-----DVLRTYEGHESFVYCIKLLP  235 (313)
T ss_dssp             EETT----EEEEEEC----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEECT
T ss_pred             EecC----ceEEEEe----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-----hhhhhhhcCCceEEEEEEec
Confidence            9943    3333333    23778899999999998 999999999999999886     56778889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ++ .|++++.||.|++||+++++          .+..+..|...|++++|+|  ++. +++++.||.|++|+++.
T Consensus       236 ~~-~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSKENGS----------LKQVITLPAISIWSVDCMS--NGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             TS-CEEEEETTSEEEEECTTTCC----------EEEEEECSSSCEEEEEECT--TSC-EEEEETTSCEEEEESCG
T ss_pred             CC-CEEEEecCCEEEEEECCCCc----------eeEEEeccCceEEEEEEcc--CCC-EEEEeCCCcEEEEeCCC
Confidence            99 58899999999999998887          5555667888899999999  777 66799999999999883

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-35  Score=261.57  Aligned_cols=265  Identities=16%  Similarity=0.238  Sum_probs=212.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +++.||.|++||+.+ ++....... .|...|++++|+        +++++|++++.||.|++||+.+++...... .+.
T Consensus       108 ~~~~d~~v~lw~~~~-~~~~~~~~~-~~~~~v~~v~~s--------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  176 (401)
T 4aez_A          108 AVALERNVYVWNADS-GSVSALAET-DESTYVASVKWS--------HDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQ  176 (401)
T ss_dssp             EEEETTEEEEEETTT-CCEEEEEEC-CTTCCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCS
T ss_pred             EEECCCeEEEeeCCC-CcEeEeeec-CCCCCEEEEEEC--------CCCCEEEEECCCCeEEEEECcCCeEEEEec-CCC
Confidence            367899999999998 754333222 389999999999        889999999999999999999877655443 456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      ..+.++.|  ++..+++++.++.+.++.         .+.+|...|.+++|+      +++.+      |++++.|+.|+
T Consensus       177 ~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~s~~~d~~v~  242 (401)
T 4aez_A          177 ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR------SDGLQ------LASGGNDNVVQ  242 (401)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEE
T ss_pred             CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc------CCCCE------EEEEeCCCeEE
Confidence            67778888  678999999888887665         356799999999999      78888      99999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEe--eCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI  228 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v  228 (351)
                      +||++.  +.....+.     .|...|.+++|+|++. ++++++  .|+.|++||++++     .++..+. +...|.++
T Consensus       243 iwd~~~--~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~-~~~~v~~~  309 (401)
T 4aez_A          243 IWDARS--SIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVD-AGSQVTSL  309 (401)
T ss_dssp             EEETTC--SSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEE-CSSCEEEE
T ss_pred             EccCCC--CCccEEec-----CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEe-CCCcEEEE
Confidence            999998  66665554     6788999999999775 555554  6999999999886     4455554 66789999


Q ss_pred             EeecCCCEEEEE--eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          229 SWSRSSDYLLSV--SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       229 ~~sp~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|+|++++|+++  +.||.|++||+.++..        .....+.+|...|.+++|+|  ++.+|++++.||.|++|++.
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~--------~~~~~~~~h~~~v~~~~~s~--dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGL--------TKQVDIPAHDTRVLYSALSP--DGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEEEEETTEE--------EEEEEEECCSSCCCEEEECT--TSSEEEEECTTSEEEEEECC
T ss_pred             EECCCCCeEEEEeecCCCcEEEEecCCccc--------eeEEEecCCCCCEEEEEECC--CCCEEEEEeCCCcEEEEECC
Confidence            999999999984  4899999999977541        23334567888999999999  99999999999999999987


Q ss_pred             -chhhhce
Q 048511          307 -LSFLKTL  313 (351)
Q Consensus       307 -~~~~~~~  313 (351)
                       ++.+...
T Consensus       380 ~~~~~~~~  387 (401)
T 4aez_A          380 DGDHVKRP  387 (401)
T ss_dssp             C-------
T ss_pred             CCcccccc
Confidence             5555443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.8e-35  Score=252.16  Aligned_cols=249  Identities=20%  Similarity=0.257  Sum_probs=197.6

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcc-cCCCCCccEEEEeeCCCcEEEEecCCCcc------cceeecccccceeeeEeeec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVC-TSGEAISILLVSSSQDKVIRIWKLALRGS------SANTQSTYRKEVISLASYIE   91 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~-~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~   91 (351)
                      +.....+.+|.+.|++++|.+... +   +++++|+||+.|++|++||+.....      .......+...+.+++|+++
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~---~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKEN---EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTT---CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeeeeccchhhhhheeeEEEeecC---CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            356678999999999999921100 1   3789999999999999999976532      12233455678899999999


Q ss_pred             CCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           92 GPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        92 ~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                      +.++++++.++.+++|.        .+.+|...|.+++|+      +++++      |++++.|++|++||+..  ... 
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s------p~~~~------l~s~~~d~~i~~wd~~~--~~~-  152 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS------PDNRQ------ILSAGAEREIKLWNILG--ECK-  152 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC------SSTTE------EEEEETTSCEEEEESSS--CEE-
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC------CCCCE------EEEEcCCCEEEEEeccC--Cce-
Confidence            99999999999988775        467899999999999      78888      99999999999999974  221 


Q ss_pred             EEEEeccccccccceEEEEEcCCC----------CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDG----------RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~----------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                        ........|...|.+++|+|++          .++++++.|+.|++||...      .....+.+|...|.+++|+|+
T Consensus       153 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          153 --FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             --EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEEECCSSCEEEEEECTT
T ss_pred             --eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEEcCccccceEEEECCC
Confidence              1222234677889999999987          7899999999999999543      446678889999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          234 SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +++|++++.|+.|++||+.....         ....+ .+...|++++|+|  ++.++++ +.|+.|++|++.
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~---------~~~~~-~~~~~v~~v~~sp--~~~~la~-~~d~~v~iw~~~  284 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTY---------PQREF-DAGSTINQIAFNP--KLQWVAV-GTDQGVKIFNLM  284 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSS---------CSEEE-ECSSCEEEEEECS--SSCEEEE-EESSCEEEEESS
T ss_pred             CCEEEEEcCCCeEEEEECCCCcc---------cceee-cCCCcEEEEEECC--CCCEEEE-ECCCCEEEEEeC
Confidence            99999999999999999954431         11111 2445699999999  7877665 467789999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-35  Score=258.29  Aligned_cols=276  Identities=14%  Similarity=0.139  Sum_probs=213.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      ++.++.|++||+.+.+....+..+.  .|...|++++|+    |+...++.+|++++.||.|++||+.+++...... .+
T Consensus        40 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~  114 (366)
T 3k26_A           40 TVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GH  114 (366)
T ss_dssp             EEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE----ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SC
T ss_pred             ECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec----cCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CC
Confidence            3457799999999723223333222  266889999999    2211227899999999999999999877655443 45


Q ss_pred             ccceeeeEeee-cCCeEEecCCceeEEEEEe--------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           80 RKEVISLASYI-EGPVLVAGSSSYQVSVESL--------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        80 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~--------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+.++.|+| ++..+++++.++.+.++..        +   .+|...|.+++|+      +++++      |++++.|
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d  182 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD------LLGEK------IMSCGMD  182 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC------TTSSE------EEEEETT
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC------CCCCE------EEEecCC
Confidence            67899999999 8999999999988877653        3   5799999999999      78888      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEE-----------------------eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEc
Q 048511          148 KTMMIWQPEKTTGIWMNVVT-----------------------VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN  204 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~  204 (351)
                      +.|++||++.  +.....+.                       ......|...|.+++|+  ++++++++.|+.|++||+
T Consensus       183 g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          183 HSLKLWRINS--KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             SCEEEEESCS--HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCEEEEECCC--CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            9999999987  33221111                       01122378889999998  779999999999999999


Q ss_pred             ccCccc---------CcccccccccccccEEEEEeecC--CCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511          205 VGVDID---------NWQPQKVPSGHFAAVMDISWSRS--SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       205 ~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      ++....         ....+..+..|...|++++|+|+  +++|++++.||.|++||+..++...      .....+..|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~  332 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK------AKCTTLTHH  332 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG------CEEEEECCT
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc------ccceEEccc
Confidence            775320         11235566778889999999999  9999999999999999998876211      122344455


Q ss_pred             --ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          274 --GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       274 --~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        ...|++++|+|  ++.+|++++.||.|++||+.
T Consensus       333 ~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          333 KCGAAIRQTSFSR--DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TCCSCEEEEEECT--TSSEEEEEETTSEEEEEEC-
T ss_pred             ccCCceEEEEeCC--CCCeEEEEeCCCEEEEEEec
Confidence              68899999999  99999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-34  Score=260.16  Aligned_cols=257  Identities=19%  Similarity=0.269  Sum_probs=214.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  ..+..+.+|.+.|++++|+        +++ +|++|+.||+|++||+.+++...... .+.
T Consensus       137 sgs~dg~i~vwd~~~-~--~~~~~~~~h~~~V~~l~~~--------~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~  203 (464)
T 3v7d_B          137 TGADDKMIRVYDSIN-K--KFLLQLSGHDGGVWALKYA--------HGG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHN  203 (464)
T ss_dssp             EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEC--------STT-EEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred             EEcCCCcEEEEECCC-C--cEEEEEeCCCcCEEEEEEc--------CCC-EEEEEeCCCCEEEEECCCCcEEEEEC-CCC
Confidence            478999999999998 6  5677889999999999999        666 99999999999999999887654433 456


Q ss_pred             cceeeeEee--ecCCeEEecCCceeEEEEE-------------------------------eccccccceEEEEecCCCC
Q 048511           81 KEVISLASY--IEGPVLVAGSSSYQVSVES-------------------------------LLIGHEDWVYSVQWEPPST  127 (351)
Q Consensus        81 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~~-------------------------------~~~~h~~~v~~l~~~p~~~  127 (351)
                      ..+.++.+.  +++..+++++.++.+.++.                               .+.+|...|.++.      
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------  277 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS------  277 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE------
T ss_pred             CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc------
Confidence            678888887  4778999999888887654                               3456777777774      


Q ss_pred             CCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccC
Q 048511          128 APSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~  207 (351)
                        +++++      +++++.|+.|++||+++  +..+..+.     .|...|.+++|+|+++++++++.|+.|++||++++
T Consensus       278 --~~~~~------l~~~~~d~~i~vwd~~~--~~~~~~~~-----~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          278 --GHGNI------VVSGSYDNTLIVWDVAQ--MKCLYILS-----GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             --EETTE------EEEEETTSCEEEEETTT--TEEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             --CCCCE------EEEEeCCCeEEEEECCC--CcEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence              45677      99999999999999998  77766665     78889999999999999999999999999999887


Q ss_pred             cccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG  287 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (351)
                           +++..+.+|...|.+++|+  +.+|++++.||.|++||+.+...          .... .+...+..++|++  +
T Consensus       343 -----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~----------~~~~-~~~~~~~~~~~~~--~  402 (464)
T 3v7d_B          343 -----ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR----------KFSY-HHTNLSAITTFYV--S  402 (464)
T ss_dssp             -----EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE----------EEEE-ECTTCCCEEEEEE--C
T ss_pred             -----cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce----------eeee-cCCCCccEEEEEe--C
Confidence                 5688889999999999997  57999999999999999987751          1111 3556688899999  8


Q ss_pred             CcEEEEecCCCeEEEEecC-chhhhc
Q 048511          288 NHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       288 ~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                      +.+|++|+ ||.|++||+. ++.+..
T Consensus       403 ~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          403 DNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             SSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             CCEEEEec-CCeEEEEECCCCcEEeh
Confidence            99999998 8999999987 665543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=258.59  Aligned_cols=266  Identities=15%  Similarity=0.129  Sum_probs=216.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++||..  +  ..+..+.+|...|.+++|+        +++++|++++.|+.|++||+.+++......... 
T Consensus       125 ~~~~dg~i~i~~~~--~--~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  191 (425)
T 1r5m_A          125 TGVENGELRLWNKT--G--ALLNVLNFHRAPIVSVKWN--------KDGTHIISMDVENVTILWNVISGTVMQHFELKE-  191 (425)
T ss_dssp             EEETTSCEEEEETT--S--CEEEEECCCCSCEEEEEEC--------TTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EEeCCCeEEEEeCC--C--CeeeeccCCCccEEEEEEC--------CCCCEEEEEecCCeEEEEECCCCcEEEEeeccc-
Confidence            36789999999944  3  4567888999999999999        889999999999999999998877655443322 


Q ss_pred             cc---------------eeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCC
Q 048511           81 KE---------------VISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQ  137 (351)
Q Consensus        81 ~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~  137 (351)
                      ..               +.++.+++++. ++++..++.+.++.        .+.+|...|.+++|+      +++++   
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~------~~~~~---  261 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN------DTNKL---  261 (425)
T ss_dssp             --------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE------TTTTE---
T ss_pred             cCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC------CCCCE---
Confidence            22               77888888755 66777777777664        456789999999999      78888   


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                         |++++.|+.|++||++.  +.....+.     .|...|.+++|+|++ .+++++.|+.|++||+++.     .++..
T Consensus       262 ---l~~~~~d~~i~i~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----~~~~~  325 (425)
T 1r5m_A          262 ---LLSASDDGTLRIWHGGN--GNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-----TLLAL  325 (425)
T ss_dssp             ---EEEEETTSCEEEECSSS--BSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-----EEEEE
T ss_pred             ---EEEEcCCCEEEEEECCC--CccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-----cEeEe
Confidence               99999999999999998  65555554     678899999999999 9999999999999999886     55777


Q ss_pred             cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc----------CccceEEecccccccc--ceeEEEEeee
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM----------GENSWHEVARPQVHGH--DINCVTIIQG  285 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~--~i~~~~~~~~  285 (351)
                      +..|...|.+++|+|++++|++++.||.|++||+.+......          .......+..+..|..  .|++++|+| 
T Consensus       326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-  404 (425)
T 1r5m_A          326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-  404 (425)
T ss_dssp             EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-
T ss_pred             cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-
Confidence            888999999999999999999999999999999976541000          0001114555667755  899999999 


Q ss_pred             CCCcEEEEecCCCeEEEEecCc
Q 048511          286 KGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                       ++.+|++++.||.|++|+++|
T Consensus       405 -~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          405 -AGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             -TSSEEEEEESSSCCEEEECCC
T ss_pred             -CCceEEEEecCceEEEEeecC
Confidence             899999999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6e-35  Score=257.48  Aligned_cols=279  Identities=14%  Similarity=0.168  Sum_probs=218.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceee-------
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQ-------   76 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------   76 (351)
                      ++.+++|+.+. ++  ....+.+|.+.|++++|+        + ++++|++++.||.|++||+.+........       
T Consensus        22 ~~~~~v~~~~~-~~--~~~~~~~h~~~v~~~~~s--------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   90 (408)
T 4a11_B           22 ESTRRVLGLEL-NK--DRDVERIHGGGINTLDIE--------PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI   90 (408)
T ss_dssp             HHHHHHHTEEE-CT--TEEECCCCSSCEEEEEEC--------TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE
T ss_pred             cCcceeecccc-Cc--ceeeeeccCCcEEEEEEe--------cCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc
Confidence            45677888776 43  245677899999999999        7 89999999999999999999876654433       


Q ss_pred             -----cccccceeeeEeee-cCCeEEecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           77 -----STYRKEVISLASYI-EGPVLVAGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        77 -----~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                           ..+...+.++.|++ ++..+++++.++.+.++..-       ..+...+.++.+.|..   +++.+      +++
T Consensus        91 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~  161 (408)
T 4a11_B           91 GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---TKHCL------VAV  161 (408)
T ss_dssp             CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSC---SSCCE------EEE
T ss_pred             cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCC---CCCcE------EEE
Confidence                 23567899999999 77899999999988877642       2366789999999654   45667      999


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCccc-----------C
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDID-----------N  211 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~-----------~  211 (351)
                      ++.|+.|++||++.  +..+..+.     .|...|.+++|+|+++ .+++++.||.|++||++.....           .
T Consensus       162 ~~~~~~v~~~d~~~--~~~~~~~~-----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          162 GTRGPKVQLCDLKS--GSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             EESSSSEEEEESSS--SCCCEEEC-----CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             EcCCCeEEEEeCCC--cceeeeec-----CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence            99999999999998  66655554     7888999999999998 5889999999999999875411           0


Q ss_pred             cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-------------------------------
Q 048511          212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG-------------------------------  260 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------  260 (351)
                      .........|...|.+++|+|++++|++++.|+.|++||+.++......                               
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC
Confidence            1122233678899999999999999999999999999999876532110                               


Q ss_pred             ------ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          261 ------ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       261 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                            ......+..+.+|...|++++|+|  ++.+|++++.||.|++|++. ++.+..
T Consensus       315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQS--NFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EEEEEETTTCCEEEEECCCSSCEEEEEEET--TTTEEEEEETTSCEEEEEECC------
T ss_pred             EEEEEECcCCcceeeeccCCCeEEEEEEcC--CCCEEEEECCCCeEEEEeCCCCCccCC
Confidence                  011234555667889999999999  89999999999999999987 444443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-34  Score=249.61  Aligned_cols=267  Identities=15%  Similarity=0.200  Sum_probs=211.2

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc---ceeecccccceeeeEeee--cCCeEEe
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS---ANTQSTYRKEVISLASYI--EGPVLVA   97 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~l~~   97 (351)
                      ..+.+|.+.|++++|+        +++++|++++.||.|++||+.++...   ......+...+.+++|++  ++..+++
T Consensus         5 ~~~~gH~~~v~~~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYD--------FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CEECCCSSCEEEEEEC--------SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccCcccccceeEEEEc--------CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            3567999999999999        88999999999999999999876432   222334577899999999  6999999


Q ss_pred             cCCceeEEEEEe-----------------ccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEeccCC
Q 048511           98 GSSSYQVSVESL-----------------LIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPEKT  158 (351)
Q Consensus        98 ~~~~~~~~~~~~-----------------~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~  158 (351)
                      ++.++.+.+|..                 +.+|...|.+++|+      ++  +.+      |++++.|+.|++||++. 
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~~~~~dg~v~iwd~~~-  143 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA------PAHLGLK------LACLGNDGILRLYDALE-  143 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTCEEEEEECSS-
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc------CCCCCcE------EEEecCCCcEEEecCCC-
Confidence            998888876643                 45788999999999      56  788      99999999999999987 


Q ss_pred             CcceEEEEEe--------ccccccccceEEEEEcCC---CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          159 TGIWMNVVTV--------GELSHSALGFYGGHWSPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       159 ~~~~~~~~~~--------~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                       +..+..+..        .....+...+.+++|+|+   +..+++++.++.+.+|+...+..   ..+..+.+|...|++
T Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~  219 (351)
T 3f3f_A          144 -PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAAKLPGHKSLIRS  219 (351)
T ss_dssp             -TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEEECCCCCSCEEE
T ss_pred             -hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeeeecCCCCcceeE
Confidence             332222111        012256778999999997   89999999999998887766532   346778889999999


Q ss_pred             EEeecCC----CEEEEEeCCCcEEEEcCCCcccccc------------------------------------CccceEEe
Q 048511          228 ISWSRSS----DYLLSVSHDQTTRVFAPWKNVASLM------------------------------------GENSWHEV  267 (351)
Q Consensus       228 v~~sp~~----~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~~~~~~~~  267 (351)
                      ++|+|++    ++|++++.||.|++||++.......                                    .......+
T Consensus       220 ~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (351)
T 3f3f_A          220 ISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL  299 (351)
T ss_dssp             EEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred             EEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence            9999998    8999999999999999976421100                                    01123456


Q ss_pred             ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      ..+.+|...|++++|+|  ++.+|++++.||.|++|+++ ++.++.+...
T Consensus       300 ~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  347 (351)
T 3f3f_A          300 SEHDDHNGEVWSVSWNL--TGTILSSAGDDGKVRLWKATYSNEFKCMSVI  347 (351)
T ss_dssp             EEECTTSSCEEEEEECS--SSCCEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEEecccccEEEEEEcC--CCCEEEEecCCCcEEEEecCcCcchhheeeh
Confidence            66778999999999999  89999999999999999987 5555555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.4e-34  Score=245.96  Aligned_cols=266  Identities=18%  Similarity=0.244  Sum_probs=204.1

Q ss_pred             CCCce--EEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccc----ee
Q 048511            3 GLDNK--IHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSA----NT   75 (351)
Q Consensus         3 ~~dg~--i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~----~~   75 (351)
                      ...|+  ++++.... .++....+|+||.+.|++|+|+        |+ +++|+|||.|++|+|||+.+.+...    ..
T Consensus        11 ~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~s--------p~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~   81 (340)
T 4aow_A           11 VDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATT--------PQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA   81 (340)
T ss_dssp             ----------------CEEEEEEEECCCSSCEEEEEEC--------TTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE
T ss_pred             cCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEe--------CCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE
Confidence            33454  44455555 5567777899999999999999        55 6899999999999999998765432    22


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+...+.++.|++++.++++++.++.+..+..        ...+...+..+.+.      +++.+      |++++.|
T Consensus        82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~s~s~d  149 (340)
T 4aow_A           82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS------SDNRQ------IVSGSRD  149 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC------TTSSC------EEEEETT
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe------ecCcc------ceeecCC
Confidence            3445678999999999999999999988866543        44566778888888      67888      9999999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      +.+++||+..  ..... .   ....|...+..++|++++  .++++++.|+.|++||+++.     +++..+.+|...|
T Consensus       150 ~~~~~~d~~~--~~~~~-~---~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-----~~~~~~~~h~~~v  218 (340)
T 4aow_A          150 KTIKLWNTLG--VCKYT-V---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-----KLKTNHIGHTGYL  218 (340)
T ss_dssp             SCEEEECTTS--CEEEE-E---CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCE
T ss_pred             CeEEEEEeCC--CceEE-E---EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-----ceeeEecCCCCcE
Confidence            9999999876  32221 1   234678889999998865  57889999999999999987     5677888999999


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ++++|+|++++|++++.|+.|++||+++..          .+..+. +...|.+++|+|  ++ .+++++.|+.|++||+
T Consensus       219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~----------~~~~~~-~~~~v~~~~~~~--~~-~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGK----------HLYTLD-GGDIINALCFSP--NR-YWLCAATGPSIKIWDL  284 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTE----------EEEEEE-CSSCEEEEEECS--SS-SEEEEEETTEEEEEET
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEeccCc----------eeeeec-CCceEEeeecCC--CC-ceeeccCCCEEEEEEC
Confidence            999999999999999999999999998776          343443 345799999998  55 5566778999999998


Q ss_pred             C-chhhhcee
Q 048511          306 P-LSFLKTLN  314 (351)
Q Consensus       306 ~-~~~~~~~~  314 (351)
                      + +..+..+.
T Consensus       285 ~~~~~~~~~~  294 (340)
T 4aow_A          285 EGKIIVDELK  294 (340)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCeEEEecc
Confidence            7 44444444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-34  Score=249.66  Aligned_cols=253  Identities=18%  Similarity=0.236  Sum_probs=206.3

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeecccccceeeeEeeec--CCeEEe
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTYRKEVISLASYIE--GPVLVA   97 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~l~~   97 (351)
                      .+..+.+|.+.|++++|+        +++++|++++.||.|++||+..... .......+...+.++.|+++  +.++++
T Consensus         3 ~~~~~~~h~~~v~~~~~s--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLD--------YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             --CCEEECCCCEEEEEEC--------SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccEEecCCcccEEEEEEc--------CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            456789999999999999        8899999999999999999974322 22233345678899999877  999999


Q ss_pred             cCCceeEEEEEe----------ccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511           98 GSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus        98 ~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  165 (351)
                      ++.++.+.+|..          +.+|...|.+++|+      ++  +.+      |++++.|+.|++||++.........
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~~~~~d~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA------PHEYGPL------LLVASSDGKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTSEEEEEECCTTSCCCEEE
T ss_pred             eccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC------CCCCCCE------EEEecCCCcEEEEecCCCCceeeEE
Confidence            999888876653          45688999999999      56  778      9999999999999999843233333


Q ss_pred             EEeccccccccceEEEEEcC-------------CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          166 VTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      +.     .|...|.+++|+|             ++.++++++.|+.|++||+++... ...+...+.+|...|.+++|+|
T Consensus       143 ~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v~~~~~sp  216 (379)
T 3jrp_A          143 ID-----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWVRDVAWSP  216 (379)
T ss_dssp             EE-----CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCEEEEEECC
T ss_pred             ec-----CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcEeEEEECC
Confidence            33     6788999999999             699999999999999999987531 1134567788999999999999


Q ss_pred             C---CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 S---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +   +++|++++.||.|++||++.+..     .....+.....|...|++++|+|  ++.+|++++.||.|++|++.
T Consensus       217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          217 TVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTS-----CCEEEESSSSCCSSCEEEEEECS--SSCCEEEEESSSSEEEEEEE
T ss_pred             CCCCCCeEEEEeCCCEEEEEeCCCCCc-----cceeeeeccccCCCcEEEEEEcC--CCCEEEEecCCCcEEEEeCC
Confidence            9   89999999999999999988641     11223444456788899999999  99999999999999999976

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4e-34  Score=241.87  Aligned_cols=236  Identities=18%  Similarity=0.215  Sum_probs=181.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~   79 (351)
                      +|+.|++|+|||+.. +....+.++.+|.+.|++++|+    +.  .++++|+||+.|++|++||+.++.... .....+
T Consensus        26 s~s~D~~v~iw~~~~-~~~~~~~~l~gH~~~V~~v~~s----~~--~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h   98 (297)
T 2pm7_B           26 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA----HP--KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH   98 (297)
T ss_dssp             EEETTSCEEEEEBCS-SCBCCCEEECCCSSCEEEEEEC----CG--GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC
T ss_pred             EEeCCCEEEEEecCC-CCcEEEEEEccccCCeEEEEec----CC--CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC
Confidence            478999999999976 4335567899999999999998    21  247899999999999999998764322 223345


Q ss_pred             ccceeeeEeeec--CCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCC-------CCCCcccCCCce
Q 048511           80 RKEVISLASYIE--GPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTA-------PSDGVSCQQPSS  140 (351)
Q Consensus        80 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~-------~~~~~~~~~~~~  140 (351)
                      ...+.+++|+|+  +..+++++.++.++++..          +.+|...|.+++|+|....       .+++++      
T Consensus        99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~------  172 (297)
T 2pm7_B           99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK------  172 (297)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE------
T ss_pred             CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce------
Confidence            667899999997  889999999998877653          4578889999999963210       012456      


Q ss_pred             eEEeecCCeEEEEeccCCCcc--eEEEEEeccccccccceEEEEEcCCC---CEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGI--WMNVVTVGELSHSALGFYGGHWSPDG---RSILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      |++|+.|++|++||++.....  ....+     .+|...|.+++|+|++   .+|++++.|++|++||++..........
T Consensus       173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l-----~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~  247 (297)
T 2pm7_B          173 FVTGGADNLVKIWKYNSDAQTYVLESTL-----EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL  247 (297)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEEEE-----CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred             EEEEcCCCcEEEEEEcCCCceEEEEEEe-----cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence            999999999999999873221  22233     4789999999999985   8999999999999999976421000011


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      .....|...|.+++|+|++++|++++.|+.|+||+....
T Consensus       248 ~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          248 LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            122467889999999999999999999999999998643

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=261.01  Aligned_cols=273  Identities=17%  Similarity=0.245  Sum_probs=215.7

Q ss_pred             CCCCCceEEEEEccCCC-ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCc------cc
Q 048511            1 MGGLDNKIHLYRGQRTG-KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRG------SS   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------~~   72 (351)
                      +|+.||.|++|++.... ....+..+.+|.+.|++++|+        ++ +.+|++++.|+.|++||+.+..      ..
T Consensus        84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           84 GALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN--------AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             EEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC--------SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred             EEccCCeEEEeecccccccccchhhccCCccceEEEEEc--------CCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence            36789999999998611 113667888999999999999        76 8899999999999999998876      22


Q ss_pred             cee--ecccccceeeeEeeec-CCeEEecCCceeEEEEEe--------cccc------ccceEEEEecCCCCCCCCC-cc
Q 048511           73 ANT--QSTYRKEVISLASYIE-GPVLVAGSSSYQVSVESL--------LIGH------EDWVYSVQWEPPSTAPSDG-VS  134 (351)
Q Consensus        73 ~~~--~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~--------~~~h------~~~v~~l~~~p~~~~~~~~-~~  134 (351)
                      ...  ...+...+.+++|+++ +..+++++.++.+.++..        +..|      ...|.+++|+      +++ .+
T Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~  229 (416)
T 2pm9_A          156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH------PKNSTR  229 (416)
T ss_dssp             BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC------SSCTTE
T ss_pred             cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC------CCCCCE
Confidence            222  2344667889999999 788999998888877653        3333      7889999999      554 57


Q ss_pred             cCCCceeEEeecCC---eEEEEeccCCCcceEEEEEecccc-ccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcc
Q 048511          135 CQQPSSILSASMDK---TMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       135 ~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~  209 (351)
                            |++++.|+   .|++||++... ....     ... .|...|.+++|+| ++++|++++.|+.|++||++++  
T Consensus       230 ------l~~~~~d~~~~~i~~~d~~~~~-~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--  295 (416)
T 2pm9_A          230 ------VATATGSDNDPSILIWDLRNAN-TPLQ-----TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--  295 (416)
T ss_dssp             ------EEEEECCSSSCCCCEEETTSTT-SCSB-----CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--
T ss_pred             ------EEEEECCCCCceEEEEeCCCCC-CCcE-----EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--
Confidence                  99999998   99999999731 2222     123 5788999999999 8999999999999999999886  


Q ss_pred             cCcccccccccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCccccccCcc-----------ceE------------
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKNVASLMGEN-----------SWH------------  265 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----------~~~------------  265 (351)
                         +++..+.+|...|.+++|+|++ .+|++++.|+.|++||+...........           .+.            
T Consensus       296 ---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          296 ---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             ---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             ---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence               5678888999999999999998 8999999999999999987653221000           000            


Q ss_pred             --EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          266 --EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       266 --~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                        .+..+..|...+++++|+|  ++++|++++.|+.|+||++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~s~--dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          373 VFHLQAPTWYGEPSPAAHWAF--GGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             SSCCCCCSTTCCCSCCCEEET--TTEEECBCTTSSCBCCBCCC
T ss_pred             cccccCCccccCCccceEEee--CCeEEEEeCCCCeEEEEEec
Confidence              0011223667788999999  99999999999999999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=257.61  Aligned_cols=273  Identities=11%  Similarity=0.066  Sum_probs=207.1

Q ss_pred             EEEccCCCceEEEEee-eecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCC---Ccccc-eeecccccce
Q 048511           10 LYRGQRTGKFVRACEL-KGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLAL---RGSSA-NTQSTYRKEV   83 (351)
Q Consensus        10 vw~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~---~~~~~-~~~~~~~~~~   83 (351)
                      .|+...    ..+..+ .+|.+.|++++|+        + ++++|++|+.||+|++||+.+   +.... .....+...+
T Consensus        47 ~w~~~g----~~~~~~~~~h~~~V~~~~~s--------~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v  114 (437)
T 3gre_A           47 MGNLRG----KLIATLMENEPNSITSSAVS--------PGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV  114 (437)
T ss_dssp             GGGCCC----CEEEEECTTTTSCEEEEEEE--------CSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE
T ss_pred             cccccc----eEEeeeccCCCCceEEEEEC--------CCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE
Confidence            466443    456677 8999999999999        7 899999999999999999976   33221 2222457789


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEec---c--------c------------cccceEEEEecCCCCCCCCCcccCCCce
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLL---I--------G------------HEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---~--------~------------h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                      .+++|++++..+++++.++.+.+|..-   .        +            +...+.++.+...    +++.+      
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~------  184 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN----EEKSL------  184 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC----SSCEE------
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc----CCCCE------
Confidence            999999999999999999999888652   1        1            3334444442210    56777      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-  219 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-  219 (351)
                      |++++.|+.|++||+++  +..+..+..   ..|...|.+++|+|++++|++++.||.|++||++++     .++..+. 
T Consensus       185 l~~~~~d~~i~iwd~~~--~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~  254 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRT--LERLQIIEN---SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWSF  254 (437)
T ss_dssp             EEEEETTSEEEEEETTT--CCEEEEEEC---CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEBC
T ss_pred             EEEEeCCCeEEEEeCCC--CeeeEEEcc---CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEec
Confidence            99999999999999998  777776651   127789999999999999999999999999999986     4566554 


Q ss_pred             cccccEEEEEee----cCCCEEEEEeCCCcEEEEcCCCccccccCc--------cceEEec------cccc--cccceeE
Q 048511          220 GHFAAVMDISWS----RSSDYLLSVSHDQTTRVFAPWKNVASLMGE--------NSWHEVA------RPQV--HGHDINC  279 (351)
Q Consensus       220 ~~~~~v~~v~~s----p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~------~~~~--~~~~i~~  279 (351)
                      .|...|.+++|+    |++.+|++++.|+.|++||+++++....-.        ..+.+..      .+.+  |...|++
T Consensus       255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~  334 (437)
T 3gre_A          255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST  334 (437)
T ss_dssp             TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred             CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence            677899999555    567899999999999999998776321000        0000000      1122  7778999


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      ++|++   +.+|++|+.|+.|++||+. ++.+..+.++.
T Consensus       335 l~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          335 ISVSN---DKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             EEEET---TEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             EEECC---ceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence            99985   6899999999999999987 77777777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=254.83  Aligned_cols=257  Identities=16%  Similarity=0.216  Sum_probs=208.3

Q ss_pred             CCCCCceEEEEEc----cCCCce----EEEEeeee----------cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEE
Q 048511            1 MGGLDNKIHLYRG----QRTGKF----VRACELKG----------HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIR   62 (351)
Q Consensus         1 tg~~dg~i~vw~~----~~~~~~----~~~~~~~~----------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~   62 (351)
                      +|+.||.|++|++    .+ ++.    .....+..          |.+.|++++|+        +++++|++++.||.|+
T Consensus        63 ~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~  133 (425)
T 1r5m_A           63 YGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS--------HDGNSIVTGVENGELR  133 (425)
T ss_dssp             EEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEEC--------TTSSEEEEEETTSCEE
T ss_pred             EecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEc--------CCCCEEEEEeCCCeEE
Confidence            4678999999999    76 531    02333333          68899999999        8899999999999999


Q ss_pred             EEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccc---------------eEE
Q 048511           63 IWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDW---------------VYS  119 (351)
Q Consensus        63 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~---------------v~~  119 (351)
                      +|| .++.... ....+...+.++.|++++..+++++.++.+.++..        +..+...               +.+
T Consensus       134 i~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (425)
T 1r5m_A          134 LWN-KTGALLN-VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD  211 (425)
T ss_dssp             EEE-TTSCEEE-EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred             EEe-CCCCeee-eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence            999 3343333 33345678999999999999999998888877653        3344444               888


Q ss_pred             EEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeE
Q 048511          120 VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAF  199 (351)
Q Consensus       120 l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i  199 (351)
                      +.|+      ++ ..      +++++.|+.|++||++.  +.....+.     .|...|.+++|+|++++|++++.|+.|
T Consensus       212 ~~~~------~~-~~------~~~~~~~g~i~~~d~~~--~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i  271 (425)
T 1r5m_A          212 VEWV------DD-DK------FVIPGPKGAIFVYQITE--KTPTGKLI-----GHHGPISVLEFNDTNKLLLSASDDGTL  271 (425)
T ss_dssp             CEEE------ET-TE------EEEECGGGCEEEEETTC--SSCSEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEc------CC-CE------EEEEcCCCeEEEEEcCC--Cceeeeec-----cCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            8888      44 34      89999999999999998  55555554     678899999999999999999999999


Q ss_pred             EEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          200 HLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       200 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      ++||+++.     .++..+..|...|.+++|+|++ +|++++.|+.|++||++++.          .+..+..|...|.+
T Consensus       272 ~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          272 RIWHGGNG-----NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT----------LLALSIVDGVPIFA  335 (425)
T ss_dssp             EEECSSSB-----SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE----------EEEEEECTTCCEEE
T ss_pred             EEEECCCC-----ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc----------EeEecccCCccEEE
Confidence            99999886     4577778899999999999999 99999999999999998776          55556678889999


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++|+|  ++.+|++++.||.|++|++.
T Consensus       336 ~~~s~--~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          336 GRISQ--DGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEECT--TSSEEEEEETTSCEEEEECH
T ss_pred             EEEcC--CCCEEEEEECCCeEEEEECC
Confidence            99999  89999999999999999987

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.3e-34  Score=252.78  Aligned_cols=262  Identities=17%  Similarity=0.187  Sum_probs=207.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++||+.+ +  .....+..| ..+....|+        +++++|++++.||.|++||+.++.... ....+.
T Consensus        73 ~~~~d~~v~i~d~~~-~--~~~~~~~~~-~~~~~~~~~--------~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~  139 (420)
T 3vl1_A           73 KARLDGHDFLFNTII-R--DGSKMLKRA-DYTAVDTAK--------LQMRRFILGTTEGDIKVLDSNFNLQRE-IDQAHV  139 (420)
T ss_dssp             EEEETTEEEEEECCS-E--ETTTTSCSC-CEEEEEEEC--------SSSCEEEEEETTSCEEEECTTSCEEEE-ETTSSS
T ss_pred             EEEcCCcEEEEEecc-c--ceeeEEecC-CceEEEEEe--------cCCCEEEEEECCCCEEEEeCCCcceee-eccccc
Confidence            367899999999987 4  233445555 344445677        789999999999999999998765543 334567


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.+++|+|++..|++++.++.+.+|.        .+.+|...|.+++|+      +++++      |++++.|+.|++
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~------~~~~~------l~s~~~d~~v~i  207 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII------DRGRN------VLSASLDGTIRL  207 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE------TTTTE------EEEEETTSCEEE
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc------CCCCE------EEEEcCCCcEEE
Confidence            7899999999999999999999988775        366799999999999      78888      999999999999


Q ss_pred             EeccCCCcceEEEEEecccccc---------------------ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC
Q 048511          153 WQPEKTTGIWMNVVTVGELSHS---------------------ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN  211 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~---------------------~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  211 (351)
                      ||+++  +..+..+....  .+                     ...+.+++|+|++++|++++.||.|++||+++++   
T Consensus       208 wd~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---  280 (420)
T 3vl1_A          208 WECGT--GTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---  280 (420)
T ss_dssp             EETTT--TEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred             eECCC--CceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence            99998  66666554211  22                     2345556668999999999999999999998864   


Q ss_pred             cccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccc-cccceeEEEEeeeCCCc
Q 048511          212 WQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNH  289 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  289 (351)
                       ........|...|.+++|+|+++ +|++++.||.|++||++++..         .+..+.. |...|+++.+ +  ++.
T Consensus       281 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~v~~~~~-~--~~~  347 (420)
T 3vl1_A          281 -QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------PVGEFLINEGTPINNVYF-A--AGA  347 (420)
T ss_dssp             -EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------CSEEEEESTTSCEEEEEE-E--TTE
T ss_pred             -eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------chhhhhccCCCCceEEEe-C--CCC
Confidence             22333446888999999999998 999999999999999988752         2233333 5667888855 4  588


Q ss_pred             EEEEecCCCeEEEEecCc
Q 048511          290 RFVSGADEKVARVFEAPL  307 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~~  307 (351)
                      +|++++.|+.|++|++..
T Consensus       348 ~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEETTTEEEEEEEECC
T ss_pred             EEEEecCCccEEEEeccC
Confidence            999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.4e-34  Score=252.74  Aligned_cols=275  Identities=11%  Similarity=0.074  Sum_probs=213.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++||+.. +  .....+.+|.+.|++++|+        +++++|++++.|++|++||+.+++..... ..+.
T Consensus       114 ~~~~dg~i~iwd~~~-~--~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~  181 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNF-N--LQREIDQAHVSEITKLKFF--------PSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHR  181 (420)
T ss_dssp             EEETTSCEEEECTTS-C--EEEEETTSSSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCS
T ss_pred             EEECCCCEEEEeCCC-c--ceeeecccccCccEEEEEC--------CCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCC
Confidence            467899999999988 6  4566778999999999999        88999999999999999999988766544 3456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe--------cc---ccccceEEEEecCCCCC---------------CCCCcc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL--------LI---GHEDWVYSVQWEPPSTA---------------PSDGVS  134 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~---~h~~~v~~l~~~p~~~~---------------~~~~~~  134 (351)
                      ..+.+++|+|++..+++++.++.+.+|..        +.   .|...|.++.|.|....               .+++++
T Consensus       182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  261 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY  261 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence            78999999999999999999998877653        22   34555666665432100               056777


Q ss_pred             cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcc
Q 048511          135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~  213 (351)
                            |++++.||.|++||++.  +.....+.    ..|...|.+++|+|++. +|++++.||.|++||+++.+    .
T Consensus       262 ------l~~~~~dg~i~i~d~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~----~  325 (420)
T 3vl1_A          262 ------VIAGHVSGVITVHNVFS--KEQTIQLP----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE----C  325 (420)
T ss_dssp             ------EEEEETTSCEEEEETTT--CCEEEEEC----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----S
T ss_pred             ------EEEEcCCCeEEEEECCC--CceeEEcc----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc----C
Confidence                  99999999999999998  55554443    25778899999999998 99999999999999998864    3


Q ss_pred             ccccccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc---
Q 048511          214 PQKVPSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH---  289 (351)
Q Consensus       214 ~~~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---  289 (351)
                      ++..+.. |...|.++. .+++++|++++.|+.|++||+........ ............|...|.+++|+|  ++.   
T Consensus       326 ~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~g  401 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERP-AIEFETPTFLVSNDDAVSQFCYVS--DDESNG  401 (420)
T ss_dssp             CSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSC-EECTTSCEEECCSSCCCCEEEEEC--CSSSSC
T ss_pred             chhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCcc-ceeccCccEEccCCcceEEEEEcc--CCCCcc
Confidence            4566666 667788875 45778999999999999999987532110 000001112346777899999999  787   


Q ss_pred             EEEEecCCCeEEEEecCc
Q 048511          290 RFVSGADEKVARVFEAPL  307 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~~  307 (351)
                      .+++.+.+|.+.+|+++.
T Consensus       402 ~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          402 EVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEEETTTEEEEEESCC
T ss_pred             eEEEEcCCceEEEEeccC
Confidence            777788899999999763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-33  Score=242.46  Aligned_cols=241  Identities=12%  Similarity=0.197  Sum_probs=203.8

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec----ccccceeeeEeeecCCeEEec
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS----TYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      ....+|.+.|++++|+        +++++|++++ ||.|++||+.++........    .+...+.++.|+++++.++++
T Consensus        45 ~~~~~h~~~v~~~~~~--------~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  115 (337)
T 1gxr_A           45 INTLNHGEVVCAVTIS--------NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             EEEECCSSCCCEEEEC--------SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             ceeccCCCceEEEEEe--------cCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE
Confidence            3445799999999999        8899999999 99999999987754333322    456788999999999999999


Q ss_pred             CCceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511           99 SSSYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV  168 (351)
Q Consensus        99 ~~~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  168 (351)
                      +.++.+.++.          .+..|...|.+++|+      +++++      |++++.|+.|++||+++  +.....+. 
T Consensus       116 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~------l~~~~~dg~v~~~d~~~--~~~~~~~~-  180 (337)
T 1gxr_A          116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS------PDSKV------CFSCCSDGNIAVWDLHN--QTLVRQFQ-  180 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEEEEEC-
T ss_pred             cCCCcEEEEECCCCCcceeeecccCCCceEEEEEC------CCCCE------EEEEeCCCcEEEEeCCC--Cceeeeee-
Confidence            8888776653          356688899999999      78888      99999999999999998  66666554 


Q ss_pred             ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEE
Q 048511          169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV  248 (351)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~v  248 (351)
                          .|...+.+++|+|+++++++++.|+.|++||+++++     .+..+ .+...+.+++|+|++++|++++.|+.|++
T Consensus       181 ----~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~  250 (337)
T 1gxr_A          181 ----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             ----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ----cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence                678899999999999999999999999999998863     34443 46788999999999999999999999999


Q ss_pred             EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhh
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFL  310 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~  310 (351)
                      ||+....          . .....|...|.+++|+|  ++.+|++++.||.|++|++. ++.+
T Consensus       251 ~~~~~~~----------~-~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          251 LHVNKPD----------K-YQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EETTSSC----------E-EEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EECCCCC----------e-EEEcCCccceeEEEECC--CCCEEEEecCCCcEEEEECCCCeEE
Confidence            9998775          1 23457888899999999  89999999999999999987 4443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.3e-33  Score=245.58  Aligned_cols=232  Identities=11%  Similarity=0.103  Sum_probs=179.8

Q ss_pred             CCCCceEEEEEccCCC-ceEEEEee-----eecCCceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccc
Q 048511            2 GGLDNKIHLYRGQRTG-KFVRACEL-----KGHTDWIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSA   73 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~-~~~~~~~~-----~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~   73 (351)
                      |+.|+.+++|++.... ........     ..+...+.+++|+        |+|++|+++  +.|++|+|||+.+++...
T Consensus       100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS--------pDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A          100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS--------REGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC--------TTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc--------CCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            5679999999987622 22222222     2344568999999        889987654  579999999998765432


Q ss_pred             eeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           74 NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      .                                   + .|...|.+++|+      |++++      |++++.++ +++|
T Consensus       172 ~-----------------------------------~-~~~~~V~~v~fs------pdg~~------l~s~s~~~-~~~~  202 (365)
T 4h5i_A          172 E-----------------------------------I-ETRGEVKDLHFS------TDGKV------VAYITGSS-LEVI  202 (365)
T ss_dssp             E-----------------------------------E-ECSSCCCEEEEC------TTSSE------EEEECSSC-EEEE
T ss_pred             E-----------------------------------e-CCCCceEEEEEc------cCCce------EEecccee-EEEE
Confidence            2                                   2 267789999999      79998      99988655 6666


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      +..+  +.......   ...|...|.+++|+|+++.+++++.|+    .+++|++...... ......+.+|...|++++
T Consensus       203 ~~~~--~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~  276 (365)
T 4h5i_A          203 STVT--GSCIARKT---DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMD  276 (365)
T ss_dssp             ETTT--CCEEEEEC---CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEE
T ss_pred             Eecc--Ccceeeee---cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCeEeEE
Confidence            6666  44333222   236778899999999999999999887    6888988765321 012345678899999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      |+|+|++||+|+.|++|+|||+++++          .+.. +.+|...|++++|+|  |+.+||+||.|++||||+++.+
T Consensus       277 ~Spdg~~lasgs~D~~V~iwd~~~~~----------~~~~~~~gH~~~V~~v~fSp--dg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          277 VDMKGELAVLASNDNSIALVKLKDLS----------MSKIFKQAHSFAITEVTISP--DSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTE----------EEEEETTSSSSCEEEEEECT--TSCEEEEEETTSEEEEEECCTT
T ss_pred             ECCCCCceEEEcCCCEEEEEECCCCc----------EEEEecCcccCCEEEEEECC--CCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999998876          4544 468999999999999  9999999999999999998743

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.9e-34  Score=246.06  Aligned_cols=217  Identities=20%  Similarity=0.314  Sum_probs=173.5

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      .+.+|.+.|++++|+        +++++||||+.|++|++||+.++..                                
T Consensus         8 ~~~~H~~~V~~v~~s--------~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------   47 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMD--------YYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------   47 (316)
T ss_dssp             ------CCEEEEEEC--------GGGCEEEEEETTTEEEEEEEETTEE--------------------------------
T ss_pred             ecccccCeEEEeeEc--------CCCCEEEEEeCCCeEEEEEecCCCc--------------------------------
Confidence            567999999999999        8899999999999999999976432                                


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                       .....+.+|.++|.+++|+|.    .++++      |++|+.|++|++||+++.+......+     ..|...|.+++|
T Consensus        48 -~~~~~l~gH~~~V~~v~~~~~----~~~~~------l~s~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~  111 (316)
T 3bg1_A           48 -ILIADLRGHEGPVWQVAWAHP----MYGNI------LASCSYDRKVIIWREENGTWEKSHEH-----AGHDSSVNSVCW  111 (316)
T ss_dssp             -EEEEEEECCSSCEEEEEECCG----GGSSC------EEEEETTSCEEEECCSSSCCCEEEEE-----CCCSSCCCEEEE
T ss_pred             -EEEEEEcCCCccEEEEEeCCC----CCCCE------EEEEECCCEEEEEECCCCcceEEEEc-----cCCCCceEEEEE
Confidence             122456789999999999841    14778      99999999999999987322333333     378889999999


Q ss_pred             cCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-----------------CCEEEEEeCCC
Q 048511          184 SPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-----------------SDYLLSVSHDQ  244 (351)
Q Consensus       184 ~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----------------~~~l~s~~~dg  244 (351)
                      +|+  +.+|++++.|+.|++||++....  +.....+.+|...|.+++|+|+                 +++|++++.|+
T Consensus       112 ~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~  189 (316)
T 3bg1_A          112 APHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN  189 (316)
T ss_dssp             CCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS
T ss_pred             CCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC
Confidence            998  78999999999999999987521  1234567789999999999997                 47899999999


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC----cEEEEecCCCeEEEEecCc
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN----HRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~s~~~dg~v~vw~~~~  307 (351)
                      .|++||++...       .+..+..+.+|...|++++|+|  ++    .+|++++.|+.|++|++..
T Consensus       190 ~v~lWd~~~~~-------~~~~~~~l~~h~~~V~~v~~sp--~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          190 LIKLWKEEEDG-------QWKEEQKLEAHSDWVRDVAWAP--SIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             BCCEEEECTTS-------CEEEEECCBCCSSCEEEEECCC--CSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             eEEEEEeCCCC-------ccceeeecccCCCceEEEEecC--CCCCCCceEEEEcCCCeEEEEEccC
Confidence            99999996543       3446667789999999999999  65    7999999999999999763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.4e-34  Score=252.04  Aligned_cols=267  Identities=16%  Similarity=0.183  Sum_probs=210.8

Q ss_pred             CCCCCceEEEEEccCCCce-EEEEeeeecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcc------c
Q 048511            1 MGGLDNKIHLYRGQRTGKF-VRACELKGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGS------S   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~------~   72 (351)
                      +|+.||.|+||++...++. ..+..+.+|.+.|++++|+        + ++++|++|+.||+|++||+.++..      .
T Consensus        52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--------p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  123 (402)
T 2aq5_A           52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWC--------PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP  123 (402)
T ss_dssp             CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEEC--------TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC
T ss_pred             EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeC--------CCCCCEEEEEeCCCeEEEEEccCCCCccccCCc
Confidence            4788999999999763322 2344678999999999999        7 889999999999999999988742      2


Q ss_pred             ceeecccccceeeeEeeecC-CeEEecCCceeEEEEE--------ec--cccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           73 ANTQSTYRKEVISLASYIEG-PVLVAGSSSYQVSVES--------LL--IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--------~~--~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      ......+...+.+++|+|++ .++++++.++.+.+|.        .+  .+|...|.+++|+      +++++      |
T Consensus       124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l  191 (402)
T 2aq5_A          124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS------RDGAL------I  191 (402)
T ss_dssp             SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC------TTSSC------E
T ss_pred             eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC------CCCCE------E
Confidence            22334456789999999998 6899999888887765        35  6799999999999      78888      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEE---eeCCeEEEEEcccCcccCcccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAH---GYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      ++++.|+.|++||++.  +..+..+.    ..|... +.+++|+|++++|+++   +.|+.|++||+++..    .++..
T Consensus       192 ~~~~~d~~i~iwd~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~----~~~~~  261 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRK--GTVVAEKD----RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE----EPLSL  261 (402)
T ss_dssp             EEEETTSEEEEEETTT--TEEEEEEE----CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS----SCSEE
T ss_pred             EEEecCCcEEEEeCCC--Cceeeeec----cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc----CCceE
Confidence            9999999999999998  66666552    145444 8899999999999999   789999999998864    22222


Q ss_pred             c-ccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          218 P-SGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       218 ~-~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      . ..|...+.+++|+|++++|+ +++.|+.|++||+.+++.      ....+..+. |...|.+++|+|  ++.++++  
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~------~~~~l~~~~-~~~~v~~~~~sp--~~~~~~s--  330 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP------FLHYLSMFS-SKESQRGMGYMP--KRGLEVN--  330 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT------CEEEEEEEC-CSSCCSEEEECC--GGGSCGG--
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc------ceEeecccc-cCCcccceEEec--cccccee--
Confidence            2 24677899999999999986 455799999999988761      123333333 567899999999  7887765  


Q ss_pred             CCCeEEEEecCch
Q 048511          296 DEKVARVFEAPLS  308 (351)
Q Consensus       296 ~dg~v~vw~~~~~  308 (351)
                      .++.+++|++...
T Consensus       331 ~~~~~~~~~l~~~  343 (402)
T 2aq5_A          331 KCEIARFYKLHER  343 (402)
T ss_dssp             GTEEEEEEEEETT
T ss_pred             cceeEEEEEcCCC
Confidence            4669999998743

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.6e-34  Score=255.13  Aligned_cols=223  Identities=16%  Similarity=0.168  Sum_probs=179.7

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      ....+|...|++|+|+    |   .++.+||+|+.||+|+|||+.++.....                            
T Consensus       113 ~~~~~~~~~V~~l~~~----P---~~~~~lasGs~dg~i~lWd~~~~~~~~~----------------------------  157 (435)
T 4e54_B          113 QKAAPFDRRATSLAWH----P---THPSTVAVGSKGGDIMLWNFGIKDKPTF----------------------------  157 (435)
T ss_dssp             CEEEECSSCEEEEEEC----S---SCTTCEEEEETTSCEEEECSSCCSCCEE----------------------------
T ss_pred             ccCCCCCCCEEEEEEe----C---CCCCEEEEEeCCCEEEEEECCCCCceeE----------------------------
Confidence            4566899999999999    2   2567999999999999999987653321                            


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                           ..+.+|.+.|++|+|+|     .++++      |++|+.|++|++||++.  +.. ..+.  ....+...+.+++
T Consensus       158 -----~~~~gH~~~V~~l~f~p-----~~~~~------l~s~s~D~~v~iwd~~~--~~~-~~~~--~~~~~~~~~~~~~  216 (435)
T 4e54_B          158 -----IKGIGAGGSITGLKFNP-----LNTNQ------FYASSMEGTTRLQDFKG--NIL-RVFA--SSDTINIWFCSLD  216 (435)
T ss_dssp             -----ECCCSSSCCCCEEEECS-----SCTTE------EEEECSSSCEEEEETTS--CEE-EEEE--CCSSCSCCCCCEE
T ss_pred             -----EEccCCCCCEEEEEEeC-----CCCCE------EEEEeCCCEEEEeeccC--Cce-eEEe--ccCCCCccEEEEE
Confidence                 23468999999999996     47788      99999999999999986  332 2222  1223445678999


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCccccccCc
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNVASLMGE  261 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~  261 (351)
                      |+|++++|++|+.||.|++||++..      .+..+.+|...|++++|+|++. +|++++.|+.|+|||+++.....   
T Consensus       217 ~~~~~~~l~~g~~dg~i~~wd~~~~------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~---  287 (435)
T 4e54_B          217 VSASSRMVVTGDNVGNVILLNMDGK------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---  287 (435)
T ss_dssp             EETTTTEEEEECSSSBEEEEESSSC------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---
T ss_pred             ECCCCCEEEEEeCCCcEeeeccCcc------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---
Confidence            9999999999999999999999763      4677889999999999999876 68899999999999998776221   


Q ss_pred             cceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          262 NSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                          .+.....|...|++++|+|  ++.+|++++.||.|+|||+. +.....+..+
T Consensus       288 ----~~~~~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          288 ----SFLYSLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             ----CCSBCCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred             ----eEEEeeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence                3334457888999999999  99999999999999999987 5555554443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=258.53  Aligned_cols=276  Identities=13%  Similarity=0.119  Sum_probs=199.2

Q ss_pred             CCCCCceEEEEEccC---CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC---CCcccce
Q 048511            1 MGGLDNKIHLYRGQR---TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA---LRGSSAN   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~---~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~---~~~~~~~   74 (351)
                      +|+.||+|+|||+..   ...+.....+ +|.+.|++++|+        +++++|++++.||+|++||+.   .++....
T Consensus        81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~--------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  151 (437)
T 3gre_A           81 TGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI--------PNFDAFAVSSKDGQIIVLKVNHYQQESEVKF  151 (437)
T ss_dssp             EEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEEC--------TTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred             EecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEe--------CCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence            478999999999865   1111122233 599999999999        889999999999999999995   3332221


Q ss_pred             eec---------c--cccceeeeE--eeecCCeEEecCCceeEEEEE--------eccc--cccceEEEEecCCCCCCCC
Q 048511           75 TQS---------T--YRKEVISLA--SYIEGPVLVAGSSSYQVSVES--------LLIG--HEDWVYSVQWEPPSTAPSD  131 (351)
Q Consensus        75 ~~~---------~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~--------~~~~--h~~~v~~l~~~p~~~~~~~  131 (351)
                      ...         .  ....+.++.  +++++..+++++.++.+.++.        .+.+  |...|++++|+      ++
T Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s------~~  225 (437)
T 3gre_A          152 LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID------EE  225 (437)
T ss_dssp             EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC------TT
T ss_pred             cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC------CC
Confidence            110         0  223344444  557899999999999887765        3455  88999999999      78


Q ss_pred             CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc----CCCCEEEEEeeCCeEEEEEcccC
Q 048511          132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS----PDGRSILAHGYGGAFHLWRNVGV  207 (351)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~~~dg~i~~~d~~~~  207 (351)
                      +.+      |++|+.||.|++||++.  +..+..+..    .+...|.+++|+    |++.+|++++.|+.|++||++++
T Consensus       226 ~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~~----~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          226 CCV------LILGTTRGIIDIWDIRF--NVLIRSWSF----GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             SCE------EEEEETTSCEEEEETTT--TEEEEEEBC----TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CCE------EEEEcCCCeEEEEEcCC--ccEEEEEec----CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            888      99999999999999998  777666542    456689999665    46779999999999999999876


Q ss_pred             cccC-------------cccc------ccccc--ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc----
Q 048511          208 DIDN-------------WQPQ------KVPSG--HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN----  262 (351)
Q Consensus       208 ~~~~-------------~~~~------~~~~~--~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----  262 (351)
                      +...             +.+.      ..+.+  |...|++++|+ ++++|++++.|+.|++||+.+++....-..    
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  372 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRF  372 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--C
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccccc
Confidence            3100             0000      01223  77789999999 778999999999999999988763221000    


Q ss_pred             -----------------------ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          263 -----------------------SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       263 -----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                                             ..........|...|++++|++..++.+|++|+.||.|+||+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                   000011123488889999999922388999999999999995

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9.8e-33  Score=245.47  Aligned_cols=260  Identities=12%  Similarity=0.133  Sum_probs=206.2

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCC---------cccceeecccccceeeeEeeec
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALR---------GSSANTQSTYRKEVISLASYIE   91 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~   91 (351)
                      .....+|.+.|++++|+        ++ +.+|++++.||.|++|++...         .........+...+.+++|+++
T Consensus       121 ~~~~~~h~~~v~~l~~~--------p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  192 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN  192 (430)
T ss_dssp             EEEEEEESSCCSEEEEE--------TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT
T ss_pred             EEEEEcCCCcEEEEEEC--------CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC
Confidence            34566899999999999        65 789999999999999999862         1122223345667899999999


Q ss_pred             CC-eEEecCCceeEEEEEe---------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           92 GP-VLVAGSSSYQVSVESL---------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        92 ~~-~l~~~~~~~~~~~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      +. .|++++.++.+.++..               +.+|...|.+++|+|     .++.+      |++++.|+.|++||+
T Consensus       193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~~------l~s~~~dg~i~i~d~  261 (430)
T 2xyi_A          193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL-----LHESL------FGSVADDQKLMIWDT  261 (430)
T ss_dssp             STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS-----SCTTE------EEEEETTSEEEEEET
T ss_pred             CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC-----CCCCE------EEEEeCCCeEEEEEC
Confidence            88 9999998888877653               347889999999995     36677      999999999999999


Q ss_pred             cCCC-cceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC
Q 048511          156 EKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS  233 (351)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  233 (351)
                      +... ......+.     .|...|.+++|+|++. ++++++.||.|++||++...    .++..+..|...|.+++|+|+
T Consensus       262 ~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          262 RNNNTSKPSHTVD-----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEIFQVQWSPH  332 (430)
T ss_dssp             TCSCSSSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCEEEEEECSS
T ss_pred             CCCCCCcceeEee-----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCEEEEEECCC
Confidence            9731 13344443     6788999999999987 68899999999999998753    567888889999999999999


Q ss_pred             CC-EEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecCc
Q 048511          234 SD-YLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAPL  307 (351)
Q Consensus       234 ~~-~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~  307 (351)
                      ++ +|++++.|+.|+|||+........    .......+....+|...|++++|+|  ++. +|++++.||.|+||++..
T Consensus       333 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS--SSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC--CCCCEEEEEECCCCEEEeEccc
Confidence            85 689999999999999977321000    0000124555668888999999999  777 999999999999999986


Q ss_pred             hhhh
Q 048511          308 SFLK  311 (351)
Q Consensus       308 ~~~~  311 (351)
                      ..+.
T Consensus       411 ~~~~  414 (430)
T 2xyi_A          411 NVYN  414 (430)
T ss_dssp             HHHC
T ss_pred             cccc
Confidence            5544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.4e-33  Score=263.05  Aligned_cols=256  Identities=17%  Similarity=0.231  Sum_probs=208.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc----ceeecccccceeeeEeeecCCeE
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS----ANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      .....+++|.+.|++|+|+    +   .++++|+||+.|++|++|++......    ......+...+.+++++++++++
T Consensus       373 ~~~~~l~~H~~~V~~v~~~----~---~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l  445 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATP----I---DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA  445 (694)
T ss_dssp             EEEEEEECCSSCEEEEECC----T---TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             chhhhcccCCceeEEEEec----C---CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE
Confidence            4456789999999999999    2   24579999999999999999865432    22344567788999999999999


Q ss_pred             EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511           96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      ++++.++.+++|.        .+.+|...|.+++|+      +++++      |++++.|++|++||+..  .. ...+.
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s------~~~~~------l~s~s~D~~i~iwd~~~--~~-~~~~~  510 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS------LDNRQ------IVSASRDRTIKLWNTLG--EC-KYTIS  510 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC------TTSSC------EEEEETTSCEEEECTTS--CE-EEEEC
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe------CCCCE------EEEEeCCCEEEEEECCC--Cc-ceeec
Confidence            9999999998775        467899999999999      78888      99999999999999865  22 22221


Q ss_pred             eccccccccceEEEEEcCCC--CEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511          168 VGELSHSALGFYGGHWSPDG--RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT  245 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~  245 (351)
                       .....|...|.+++|+|++  ..+++++.|+.|++||+++.     ++...+.+|...|++++|+|++++|++++.|+.
T Consensus       511 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          511 -EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             -SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             -cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence             1234678889999999987  58999999999999999886     557788899999999999999999999999999


Q ss_pred             EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      |++||+++++          .+..+. +...|.+++|+|  ++.+|++++ |+.|+|||+. +..+..+..+.
T Consensus       585 i~iwd~~~~~----------~~~~~~-~~~~v~~~~~sp--~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~  643 (694)
T 3dm0_A          585 VLLWDLAEGK----------KLYSLE-ANSVIHALCFSP--NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDL  643 (694)
T ss_dssp             CEEEETTTTE----------EEECCB-CSSCEEEEEECS--SSSEEEEEE-TTEEEEEETTTTEEEEEECCCC
T ss_pred             EEEEECCCCc----------eEEEec-CCCcEEEEEEcC--CCcEEEEEc-CCCEEEEECCCCCChhhhcccc
Confidence            9999998876          444443 345699999999  787777665 5569999987 66666665433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=248.83  Aligned_cols=268  Identities=10%  Similarity=0.184  Sum_probs=203.3

Q ss_pred             CCCCCceEEEEEccCCCc---------eEEEEeeeecC------------CceeEEEeeCCcccCCCCCc--cEEEEeeC
Q 048511            1 MGGLDNKIHLYRGQRTGK---------FVRACELKGHT------------DWIRSLDFSLPVCTSGEAIS--ILLVSSSQ   57 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~---------~~~~~~~~~h~------------~~V~~l~~~~~~~~~~~~~~--~~l~t~~~   57 (351)
                      +|+.||.|+||++.. ++         +.....+.+|.            +.|++++|+        +++  .+|++++.
T Consensus        45 ~g~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--------~~~~~~~l~s~s~  115 (447)
T 3dw8_B           45 TGDKGGRVVIFQQEQ-ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--------PQKNAAQFLLSTN  115 (447)
T ss_dssp             EEETTSEEEEEEECC------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC--------CCCSSSEEEEEEC
T ss_pred             EEcCCCeEEEEEecC-CCCCCcccccceeEecccccccccccccccccccCceEEEEEc--------CCCCcceEEEeCC
Confidence            478899999999986 32         34577889998            889999999        666  79999999


Q ss_pred             CCcEEEEecCCCcccc---------------------------------------eeecccccceeeeEeeecCCeEEec
Q 048511           58 DKVIRIWKLALRGSSA---------------------------------------NTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        58 dg~i~iwd~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      |++|++||+.+.....                                       .....+...+.+++|++++..++++
T Consensus       116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  195 (447)
T 3dw8_B          116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA  195 (447)
T ss_dssp             SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred             CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence            9999999997643210                                       1123456778899999999999998


Q ss_pred             CCceeEEEEEe----------------ccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           99 SSSYQVSVESL----------------LIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        99 ~~~~~~~~~~~----------------~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                       .++.+.+|..                +.+|...|.+++|+      +++ ++      |++|+.|+.|++||++.  +.
T Consensus       196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------p~~~~~------l~s~~~dg~i~iwd~~~--~~  260 (447)
T 3dw8_B          196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH------PNSCNT------FVYSSSKGTIRLCDMRA--SA  260 (447)
T ss_dssp             -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC------SSCTTE------EEEEETTSCEEEEETTT--CS
T ss_pred             -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC------CCCCcE------EEEEeCCCeEEEEECcC--Cc
Confidence             6888876642                45789999999999      676 78      99999999999999998  44


Q ss_pred             e----EEEEEecccccccc------------ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccccccc-
Q 048511          162 W----MNVVTVGELSHSAL------------GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA-  224 (351)
Q Consensus       162 ~----~~~~~~~~~~~~~~------------~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~-  224 (351)
                      .    ...+.     .+..            .|.+++|+|++++|++++. +.|++||++...    .++..+.+|... 
T Consensus       261 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~  330 (447)
T 3dw8_B          261 LCDRHSKLFE-----EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEYLR  330 (447)
T ss_dssp             SSCTTCEEEC-----CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGGGT
T ss_pred             cccceeeEec-----cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccccc
Confidence            3    34443     3443            8999999999999999998 999999998722    567777777532 


Q ss_pred             --------------EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-cc------ceE---------------Eec
Q 048511          225 --------------VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG-EN------SWH---------------EVA  268 (351)
Q Consensus       225 --------------v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~------~~~---------------~~~  268 (351)
                                    +..++|+|++++|++++.||.|++||+.+++..... ..      ...               ...
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                          334999999999999999999999999887621100 00      000               000


Q ss_pred             cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ....+...|..++|+|  ++.+||+++.++ +++|..
T Consensus       411 ~~~~~~~~i~~~~~~p--~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHP--KENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             GGCCTTSCCCEEEECS--SSSEEEEECSSC-EEEEEC
T ss_pred             cccccCCceeEEEECC--CCCEEEEEecce-eeeecc
Confidence            0112345689999999  899999998886 677764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.6e-33  Score=244.55  Aligned_cols=260  Identities=10%  Similarity=0.107  Sum_probs=204.8

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeec-ccccceeeeEeee-cCCeE
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQS-TYRKEVISLASYI-EGPVL   95 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l   95 (351)
                      +.....+.+|.+.|++++|+        +++ ++|++|+.||.|++||+.++........ .+...+.++.|+| ++..+
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~--------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWH--------PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEEC--------SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             cceEEeccCCCCCEEEEEEC--------CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence            35677889999999999999        777 8999999999999999998776655442 4677899999999 78999


Q ss_pred             EecCCceeEEEEEe-------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511           96 VAGSSSYQVSVESL-------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus        96 ~~~~~~~~~~~~~~-------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  165 (351)
                      ++++.++.+.++..       +   .+|...|.+++|+      +++++      |++++.|+.|++||++   +..+..
T Consensus       135 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~i~d~~---~~~~~~  199 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS------VSRQM------LATGDSTGRLLLLGLD---GHEIFK  199 (383)
T ss_dssp             EEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE------TTTTE------EEEEETTSEEEEEETT---SCEEEE
T ss_pred             EEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC------CCCCE------EEEECCCCCEEEEECC---CCEEEE
Confidence            99999988877653       2   3345789999999      78888      9999999999999994   555555


Q ss_pred             EEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEeCC
Q 048511          166 VTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHD  243 (351)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~d  243 (351)
                      +.     .|...|.+++|+|+++ ++++++.|+.|++||+++.+.. ..++..+ +|...|.+++|+| ++++|++++.|
T Consensus       200 ~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          200 EK-----LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             EE-----CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS
T ss_pred             ec-----cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC
Confidence            55     7888999999999999 9999999999999999874311 0234444 6899999999999 99999999999


Q ss_pred             CcEEEEcCCCccccccCccceEEe-ccccccc----------cceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEV-ARPQVHG----------HDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~----------~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~  311 (351)
                      +.|++||+++.....    .+... .....|.          ..+..++|+|  ++.+  +++.|+.|++||+. ++.+.
T Consensus       273 ~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~--dg~~--s~s~d~~i~iwd~~~~~~~~  344 (383)
T 3ei3_B          273 NEIRVYSSYDWSKPD----QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP--DDQL--LLNDKRTIDIYDANSGGLVH  344 (383)
T ss_dssp             SEEEEEETTBTTSCS----EEEECCBCCCTTSCCCCCEECSSSSEEEEECBC--CTTT--CTTCCCCEEEEETTTCCEEE
T ss_pred             CcEEEEECCCCcccc----ccccccccccccccceEEeccCCCCceEEEecC--Cccc--ccCCCCeEEEEecCCCceee
Confidence            999999998876321    11100 0011122          2344567777  6666  88899999999986 77777


Q ss_pred             ceeec
Q 048511          312 TLNHA  316 (351)
Q Consensus       312 ~~~~~  316 (351)
                      .+..+
T Consensus       345 ~l~~~  349 (383)
T 3ei3_B          345 QLRDP  349 (383)
T ss_dssp             EECBT
T ss_pred             eecCC
Confidence            77653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-34  Score=248.80  Aligned_cols=245  Identities=12%  Similarity=0.058  Sum_probs=196.9

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      +..|.++|++++|+        +++++|++++.|+.|++||+.++. ........+...+.+++|++++++|++++.++.
T Consensus         7 ~~~~~~~v~~~~~s--------~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C            7 LHILPKPSYEHAFN--------SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             EEECSSCCSCCEEC--------SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred             EecCCCcEEEEEEC--------CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence            44577899999999        889999999999999999999763 222333455678999999999999999998888


Q ss_pred             EEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc---eEEEEEec
Q 048511          104 VSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI---WMNVVTVG  169 (351)
Q Consensus       104 ~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~  169 (351)
                      +.+|.           .+.+|...|.+++|+      +++++      |++++.|+.|++||++.  +.   ....+.  
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~i~iwd~~~--~~~~~~~~~~~--  142 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWS------PNEDK------FAVGSGARVISVCYFEQ--ENDWWVSKHLK--  142 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECC------TTSSC------CEEEESSSCEEECCC-------CCCCEEEC--
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEEC------CCCCE------EEEEecCCeEEEEEECC--cccceeeeEee--
Confidence            76653           355789999999999      78888      99999999999999998  43   233333  


Q ss_pred             cccc-cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-------------CcccccccccccccEEEEEeecCCC
Q 048511          170 ELSH-SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-------------NWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       170 ~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                         . |...|.+++|+|++++|++++.|+.|++||++.....             ...++..+ +|...|.+++|+|+++
T Consensus       143 ---~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          143 ---RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             ---SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             ---cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence               4 8889999999999999999999999999999633210             01345555 8999999999999999


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|++++.|+.|++||+.++..      ....+..+..|...|++++|+|  ++.+|++|++|+.+ +|+..
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQ------PPRALITVKLSQLPLRSLLWAN--ESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTS------CEEECCCEECSSSCEEEEEEEE--TTEEEEEESSSSEE-EECCC
T ss_pred             EEEEEeCCCcEEEEECCCCCC------cceeeEeecCCCCceEEEEEcC--CCCEEEEEcCCcEE-EEEeC
Confidence            999999999999999998862      1223666778999999999999  89999999888777 66544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=269.15  Aligned_cols=170  Identities=9%  Similarity=0.052  Sum_probs=131.0

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEecc----ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGE----LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------  210 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------  210 (351)
                      |++|+.|++|++||+..........+....    ...|...|.+++|+|++++||+|+.||+|+|||+.+++..      
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~  529 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP  529 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred             EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence            999999999999999873211001111100    0167789999999999999999999999999999865210      


Q ss_pred             ----------------------------------CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          211 ----------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       211 ----------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                                                        .++++..+.+|.+.|++|+|+|+| +||+|+.|++|+|||++....
T Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence                                              012456778899999999999999 999999999999999877651


Q ss_pred             cccCccceEEecccc-ccccceeEEEEe-----eeCC---CcEEEEecCCCeEEEEec----Cchhhhceeeccc
Q 048511          257 SLMGENSWHEVARPQ-VHGHDINCVTII-----QGKG---NHRFVSGADEKVARVFEA----PLSFLKTLNHATF  318 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~-----~~~~---~~~l~s~~~dg~v~vw~~----~~~~~~~~~~~~~  318 (351)
                      ..     -..+..+. +|...|++++|+     |  |   +.+|++|+.|++|++||+    .|++...|.++..
T Consensus       609 ~~-----~~~~~~~~~gh~~~V~sv~Fs~~~~~~--Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~  676 (902)
T 2oaj_A          609 IY-----MENIREISGAQSACVTCIEFVIMEYGD--DGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITN  676 (902)
T ss_dssp             EE-----EEEGGGTCSSCCCCEEEEEEEEEECTT--SSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred             EE-----EeehhHhccccccceEEEEEEEEecCC--CCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCcee
Confidence            00     01223454 888999999999     7  6   489999999999999998    3777788877763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=247.29  Aligned_cols=254  Identities=15%  Similarity=0.172  Sum_probs=194.8

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc----------cceeecccc------------ccee
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS----------SANTQSTYR------------KEVI   84 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~----------~~~~~~~~~------------~~~~   84 (351)
                      .|.+.|++++|+        +++++||+|+.||.|++||+.++..          .......+.            ..+.
T Consensus        26 ~~~~~V~~v~~s--------~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           26 AEADIISTVEFN--------HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             CGGGSEEEEEEC--------SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             cccCcEEEEEEC--------CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence            367899999999        8899999999999999999987652          112222333            5688


Q ss_pred             eeEeeecC--CeEEecCCceeEEEEEe------------------------------------------------ccccc
Q 048511           85 SLASYIEG--PVLVAGSSSYQVSVESL------------------------------------------------LIGHE  114 (351)
Q Consensus        85 ~~~~~~~~--~~l~~~~~~~~~~~~~~------------------------------------------------~~~h~  114 (351)
                      ++.|++++  ..+++++.++.+++|..                                                ..+|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            99999998  78999988888877653                                                35799


Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE--eccccccccceEEEEEcCCC-CEEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT--VGELSHSALGFYGGHWSPDG-RSIL  191 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~-~~l~  191 (351)
                      ..|.+++|+      +++++      |++| .|+.|++||++.. +.....+.  ......|...|.+++|+|++ ++|+
T Consensus       178 ~~v~~~~~~------~~~~~------l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~  243 (447)
T 3dw8_B          178 YHINSISIN------SDYET------YLSA-DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV  243 (447)
T ss_dssp             SCCCEEEEC------TTSSE------EEEE-CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred             cceEEEEEc------CCCCE------EEEe-CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence            999999999      78888      9998 7999999999841 33333221  11245788899999999998 9999


Q ss_pred             EEeeCCeEEEEEcccCcccCcccccccccccc------------cEEEEEeecCCCEEEEEeCCCcEEEEcCCC-ccccc
Q 048511          192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA------------AVMDISWSRSSDYLLSVSHDQTTRVFAPWK-NVASL  258 (351)
Q Consensus       192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~------------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~  258 (351)
                      +++.||.|++||+++++.. ......+..|..            .|.+++|+|++++|++++. +.|++||++. +.   
T Consensus       244 s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~---  318 (447)
T 3dw8_B          244 YSSSKGTIRLCDMRASALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR---  318 (447)
T ss_dssp             EEETTSCEEEEETTTCSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS---
T ss_pred             EEeCCCeEEEEECcCCccc-cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc---
Confidence            9999999999999886410 011456666665            8999999999999999998 9999999987 44   


Q ss_pred             cCccceEEeccccccccc---------------eeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeec
Q 048511          259 MGENSWHEVARPQVHGHD---------------INCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHA  316 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~  316 (351)
                             .+..+..|...               +..++|+|  ++.+|++|+.||.|++||+.......+..+
T Consensus       319 -------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  382 (447)
T 3dw8_B          319 -------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG--SDSVVMTGSYNNFFRMFDRNTKRDITLEAS  382 (447)
T ss_dssp             -------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT--TSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred             -------ccceeeccccccccccccccccccccceEEEECC--CCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence                   34444455431               33489999  899999999999999999884433344433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.1e-33  Score=246.80  Aligned_cols=256  Identities=18%  Similarity=0.243  Sum_probs=208.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  .....+.+|.+.|++++|.          +++|++|+.||+|++||+.+++...... .+.
T Consensus       148 ~g~~dg~i~iwd~~~-~--~~~~~~~~h~~~v~~l~~~----------~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~  213 (435)
T 1p22_A          148 SGLRDNTIKIWDKNT-L--ECKRILTGHTGSVLCLQYD----------ERVIITGSSDSTVRVWDVNTGEMLNTLI-HHC  213 (435)
T ss_dssp             EEESSSCEEEEESSS-C--CEEEEECCCSSCEEEEECC----------SSEEEEEETTSCEEEEESSSCCEEEEEC-CCC
T ss_pred             EEeCCCeEEEEeCCC-C--eEEEEEcCCCCcEEEEEEC----------CCEEEEEcCCCeEEEEECCCCcEEEEEc-CCC
Confidence            478899999999988 6  4567889999999999987          6799999999999999999887655443 445


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      ..+.++.++  +..+++++.++.+.++.           .+.+|...|.+++|.        +++      |++|+.|+.
T Consensus       214 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~s~~~dg~  277 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--------DKY------IVSASGDRT  277 (435)
T ss_dssp             SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--------TTE------EEEEETTSE
T ss_pred             CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--------CCE------EEEEeCCCe
Confidence            677788875  56888888888887664           456788999999986        346      999999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |++||+++  +..+..+.     .|...|.++.|  ++.++++++.||.|++||++++     .++..+.+|...|.+++
T Consensus       278 i~vwd~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~~  343 (435)
T 1p22_A          278 IKVWNTST--CEFVRTLN-----GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIR  343 (435)
T ss_dssp             EEEEETTT--CCEEEEEE-----CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEE
T ss_pred             EEEEECCc--CcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEeCCcCcEEEEE
Confidence            99999998  77777766     78889999998  4689999999999999999987     56788889999999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |  ++.+|++|+.||.|++||+........ ......+..+..|...|++++|    ++.+|++|+.||.|++||+..
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQF----DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEE----CSSCEEECCSSSEEEEEC---
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccc-cccchheeeccCCCCCeEEEEe----CCCEEEEEeCCCEEEEEECCC
Confidence            9  688999999999999999866541110 0001134455688899999999    367899999999999999873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.9e-32  Score=238.70  Aligned_cols=246  Identities=13%  Similarity=0.092  Sum_probs=202.9

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc--ccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG--SSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      +..|.++|++++|+        +++++|++++.|+.|++||+.+++  .... ...+...+.+++|++++..+++++.++
T Consensus         4 ~~~~~~~i~~~~~s--------~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C            4 HSFLVEPISCHAWN--------KDRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             EESCSSCCCEEEEC--------TTSSEEEEECSSSEEEEEEEETTEEEEEEE-EECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ecccCCCeEEEEEC--------CCCCEEEEEeCCCEEEEEeCCCCcEEeeee-ecCCCCcccEEEEeCCCCEEEEEcCCC
Confidence            44589999999999        889999999999999999998875  3333 334567899999999999999999988


Q ss_pred             eEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          103 QVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       103 ~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                      .+.++..          +..|...|.+++|+      +++++      |++++.|+.|++||++...........   ..
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~  139 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAARCVRWA------PNEKK------FAVGSGSRVISICYFEQENDWWVCKHI---KK  139 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEEC------TTSSE------EEEEETTSSEEEEEEETTTTEEEEEEE---CT
T ss_pred             eEEEEECCCCeeeeeEEeecCCCceeEEEEC------CCCCE------EEEEeCCCEEEEEEecCCCcceeeeee---ec
Confidence            8877653          35688899999999      78888      999999999999999983321111111   23


Q ss_pred             ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCc-------------ccCcccccccccccccEEEEEeecCCCEEEE
Q 048511          173 HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVD-------------IDNWQPQKVPSGHFAAVMDISWSRSSDYLLS  239 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  239 (351)
                      .|...|.+++|+|++++|++++.|+.|++||++...             .....++..+..|...|.+++|+|++++|++
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence            577899999999999999999999999999975211             0012456677789999999999999999999


Q ss_pred             EeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          240 VSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       240 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ++.|+.|++||+++++          .+..+..|...|++++|+|  ++.+|++| .|+.|++|++..
T Consensus       220 ~~~d~~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          220 VSHDSTVCLADADKKM----------AVATLASETLPLLAVTFIT--ESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EETTTEEEEEEGGGTT----------EEEEEECSSCCEEEEEEEE--TTEEEEEE-TTSSCEEEEEET
T ss_pred             EeCCCEEEEEECCCCc----------eeEEEccCCCCeEEEEEec--CCCEEEEE-eCCeEEEEEccC
Confidence            9999999999998876          5555667888899999999  88888887 999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-32  Score=254.61  Aligned_cols=265  Identities=14%  Similarity=0.124  Sum_probs=205.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceee
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +|+.||.|++||..+ +  ..+..+.+|..   .|++++|+        ++ +++|++++.|+.|++||+.+++......
T Consensus       178 ~~~~d~~v~vwd~~~-~--~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  246 (615)
T 1pgu_A          178 TVGDDGSVVFYQGPP-F--KFSASDRTHHKQGSFVRDVEFS--------PDSGEFVITVGSDRKISCFDGKSGEFLKYIE  246 (615)
T ss_dssp             EEETTTEEEEEETTT-B--EEEEEECSSSCTTCCEEEEEEC--------STTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             EEeCCCcEEEEeCCC-c--ceeeeecccCCCCceEEEEEEC--------CCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence            467899999999987 6  56778899999   99999999        88 9999999999999999999887766663


Q ss_pred             c---ccccceeeeEeeecCCeEEecCCceeEEEEE---------------------------------------------
Q 048511           77 S---TYRKEVISLASYIEGPVLVAGSSSYQVSVES---------------------------------------------  108 (351)
Q Consensus        77 ~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------------------------------  108 (351)
                      .   .+...+.++.|+ ++..+++++.++.+.++.                                             
T Consensus       247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEE
Confidence            3   566778888888 888888876655543322                                             


Q ss_pred             --------eccccccceEEEEecCCCCC----------------------------CCCCcccCCCceeEEeecCCeEEE
Q 048511          109 --------LLIGHEDWVYSVQWEPPSTA----------------------------PSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus       109 --------~~~~h~~~v~~l~~~p~~~~----------------------------~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                              .+.+|...|.+++| |. ..                            .+++..      |++++.|+.|++
T Consensus       326 ~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~------l~~~~~d~~i~~  397 (615)
T 1pgu_A          326 LGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE------YSSISWDDTLKV  397 (615)
T ss_dssp             TTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC------CEEEETTTEEEE
T ss_pred             CCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE------EEEEeCCCCEEE
Confidence                    23345555555555 32 00                            011233      666666666666


Q ss_pred             EeccCCC------------------------------------------------------------------------c
Q 048511          153 WQPEKTT------------------------------------------------------------------------G  160 (351)
Q Consensus       153 wd~~~~~------------------------------------------------------------------------~  160 (351)
                      ||+...+                                                                        +
T Consensus       398 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~  477 (615)
T 1pgu_A          398 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL  477 (615)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             EEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCc
Confidence            6654210                                                                        1


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-ccccEEEEEeec-------
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSR-------  232 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp-------  232 (351)
                      ....    .....|...|.+++|+|++++|++++.|+.|++||+.++     +++..+.+ |...|++++|+|       
T Consensus       478 ~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~  548 (615)
T 1pgu_A          478 EVSF----DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANE  548 (615)
T ss_dssp             EEEE----ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----EEEECCSCCCSSCEEEEEECCCC-----
T ss_pred             cccc----cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-----cceeEeecCCCCceeEEEEcCccccccc
Confidence            1110    234467889999999999999999999999999999887     45677777 999999999999       


Q ss_pred             ---CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          233 ---SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       233 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                         ++++|++++.|+.|++||+.++.         ..+..+.+|...|++++|+|  ++. |++++.||.|++|+++
T Consensus       549 ~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~h~~~v~~l~~s~--~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          549 EEIEEDLVATGSLDTNIFIYSVKRPM---------KIIKALNAHKDGVNNLLWET--PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTT---------CCEEETTSSTTCEEEEEEEE--TTE-EEEEETTSCEEEEEEC
T ss_pred             cccCCCEEEEEcCCCcEEEEECCCCc---------eechhhhcCccceEEEEEcC--CCC-eEEecCCceEEEEeee
Confidence               99999999999999999998873         14556778999999999999  888 9999999999999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-32  Score=243.56  Aligned_cols=257  Identities=18%  Similarity=0.339  Sum_probs=212.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  ..+..+.+|.+.|++++|+          +++|++++.||+|++||+.+++...... .+.
T Consensus       134 sg~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~  199 (445)
T 2ovr_B          134 SGSDDNTLKVWSAVT-G--KCLRTLVGHTGGVWSSQMR----------DNIIISGSTDRTLKVWNAETGECIHTLY-GHT  199 (445)
T ss_dssp             EEETTSCEEEEETTT-C--CEEEECCCCSSCEEEEEEE----------TTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred             EEECCCcEEEEECCC-C--cEEEEEcCCCCCEEEEEec----------CCEEEEEeCCCeEEEEECCcCcEEEEEC-CCC
Confidence            478899999999998 6  4567889999999999998          5699999999999999999886654443 445


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++.+  ++..+++++.++.+.++.        .+.+|...|.++.|.        +..      +++++.|+.|++
T Consensus       200 ~~v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~~~~~dg~i~i  263 (445)
T 2ovr_B          200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--------GRR------VVSGAYDFMVKV  263 (445)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--------SSC------EEEEETTSCEEE
T ss_pred             CcEEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--------CCE------EEEEcCCCEEEE
Confidence            56777777  467899999888887665        456789999999985        456      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ||+++  +..+..+.     .|...|.+++|  ++.++++++.|+.|++||++++     +++..+.+|...+.++.++ 
T Consensus       264 wd~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~-  328 (445)
T 2ovr_B          264 WDPET--ETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-----NCIHTLTGHQSLTSGMELK-  328 (445)
T ss_dssp             EEGGG--TEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-----CEEEEECCCCSCEEEEEEE-
T ss_pred             EECCC--CcEeEEec-----CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-----CEEEEEcCCcccEEEEEEe-
Confidence            99998  77666665     78889999999  7899999999999999999887     5677888899999888774 


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhh
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~  311 (351)
                       +++|++++.||.|++||+++++       ....+.....|...|++++|+    +.+|++|+.||.|++||+. ++.+.
T Consensus       329 -~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          329 -DNILVSGNADSTVKIWDIKTGQ-------CLQTLQGPNKHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             -TTEEEEEETTSCEEEEETTTCC-------EEEEECSTTSCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -CCEEEEEeCCCeEEEEECCCCc-------EEEEEccCCCCCCCEEEEEEC----CCEEEEEeCCCeEEEEECCCCceee
Confidence             6799999999999999998876       222333333488889999984    5799999999999999987 66666


Q ss_pred             cee
Q 048511          312 TLN  314 (351)
Q Consensus       312 ~~~  314 (351)
                      .+.
T Consensus       397 ~~~  399 (445)
T 2ovr_B          397 NLV  399 (445)
T ss_dssp             EEE
T ss_pred             eee
Confidence            663

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-32  Score=274.39  Aligned_cols=274  Identities=18%  Similarity=0.233  Sum_probs=223.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  ..+..+.+|.+.|++++|+        +++++|++++.|++|++||+.+++...... .+.
T Consensus       632 s~~~d~~i~vw~~~~-~--~~~~~~~~h~~~v~~~~~s--------~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~  699 (1249)
T 3sfz_A          632 SCGADKTLQVFKAET-G--EKLLDIKAHEDEVLCCAFS--------SDDSYIATCSADKKVKIWDSATGKLVHTYD-EHS  699 (1249)
T ss_dssp             EEETTSCEEEEETTT-C--CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred             EEeCCCeEEEEECCC-C--CEEEEeccCCCCEEEEEEe--------cCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCC
Confidence            478899999999998 6  4567888999999999999        889999999999999999999887665443 456


Q ss_pred             cceeeeEeee--cCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           81 KEVISLASYI--EGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~--~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      ..+.++.|++  ++..+++++.++.+.+|.        .+.+|...|.+++|+      +++++      |++++.||.|
T Consensus       700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s------p~~~~------l~s~s~dg~v  767 (1249)
T 3sfz_A          700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS------PDDEL------LASCSADGTL  767 (1249)
T ss_dssp             SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC------SSTTE------EEEEESSSEE
T ss_pred             CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe------cCCCE------EEEEECCCeE
Confidence            7888999999  556888899888887765        467899999999999      78888      9999999999


Q ss_pred             EEEeccCCCcceEEEEEecc--------------------------------------------------ccccccceEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGE--------------------------------------------------LSHSALGFYG  180 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~i~~  180 (351)
                      ++||++.  +.....+....                                                  ...|...|.+
T Consensus       768 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~  845 (1249)
T 3sfz_A          768 RLWDVRS--ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY  845 (1249)
T ss_dssp             EEEEGGG--TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred             EEEeCCC--CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence            9999987  43333222100                                                  1256778999


Q ss_pred             EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc-
Q 048511          181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM-  259 (351)
Q Consensus       181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~-  259 (351)
                      ++|+|+++++++++.|+.|++||+.++     ..+..+.+|...|.+++|+|++++|++++.|+.|++||+........ 
T Consensus       846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~  920 (1249)
T 3sfz_A          846 CDFSPYDHLAVIALSQYCVELWNIDSR-----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI  920 (1249)
T ss_dssp             EEECSSTTEEEEECSSSCEEEEETTTT-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCC-----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence            999999999999999999999999886     55778889999999999999999999999999999999653110000 


Q ss_pred             ---------------------------------------------------------------Ccc-----ceEEecccc
Q 048511          260 ---------------------------------------------------------------GEN-----SWHEVARPQ  271 (351)
Q Consensus       260 ---------------------------------------------------------------~~~-----~~~~~~~~~  271 (351)
                                                                                     ...     .......+.
T Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A          921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp             SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred             cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence                                                                           000     011223345


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      +|...|++++|+|  ++.+|++++.||.|++|++..
T Consensus      1001 ~h~~~v~~l~~s~--dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A         1001 GHKKAVRHIQFTA--DGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CCSSCCCCEEECS--SSSCEEEECSSSBEEEEETTT
T ss_pred             cCCCceEEEEECC--CCCEEEEEcCCCEEEEEECCC
Confidence            7888899999999  999999999999999999873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-32  Score=263.86  Aligned_cols=252  Identities=15%  Similarity=0.211  Sum_probs=215.0

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .....+.+|.+.|++++|+        |++++|++++.||.|++||+.++....... .+...+.++.|+|+++.+++++
T Consensus         4 ~~~~~~~~h~~~v~~i~~s--------p~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFH--------PTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             CCEEEEEEECSCEEEEEEC--------SSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE
T ss_pred             ccceeeecCCCceEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEe
Confidence            3456889999999999999        889999999999999999999877655444 4567899999999999999999


Q ss_pred             CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc
Q 048511          100 SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE  170 (351)
Q Consensus       100 ~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~  170 (351)
                      .++.+.+|.        .+.+|.+.|.+++|+      +++.+      |++++.|+.|++||++.  + .....+.   
T Consensus        75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~------l~~~~~dg~i~vw~~~~--~~~~~~~~~---  137 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH------PTKPY------VLSGSDDLTVKLWNWEN--NWALEQTFE---  137 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------SSSSE------EEEEETTSEEEEEEGGG--TSEEEEEEE---
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCEEEEEEe------CCCCE------EEEEcCCCEEEEEECCC--CceEEEEEc---
Confidence            999887765        466799999999999      78888      99999999999999987  4 4444444   


Q ss_pred             ccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccEEEEEeec--CCCEEEEEeCCCcE
Q 048511          171 LSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAVMDISWSR--SSDYLLSVSHDQTT  246 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp--~~~~l~s~~~dg~i  246 (351)
                        .|...|.+++|+| ++..+++++.||.|++||+.+..     ....+..+ ...+..++|+|  ++.+|++++.||.|
T Consensus       138 --~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  210 (814)
T 3mkq_A          138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI  210 (814)
T ss_dssp             --CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred             --CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence              7888999999999 88999999999999999998763     34444444 47899999999  99999999999999


Q ss_pred             EEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeec
Q 048511          247 RVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       247 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      ++||+.++.          .+..+..|...|++++|+|  ++.+|++++.||.|++||+. +..+..+..+
T Consensus       211 ~~~d~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          211 KIWDYQTKS----------CVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             EEEETTTTE----------EEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             EEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            999998776          5555667888999999999  89999999999999999987 5666665544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.9e-32  Score=232.90  Aligned_cols=260  Identities=8%  Similarity=-0.000  Sum_probs=207.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEec-CCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKL-ALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~-~~~~~~~~~~~~   78 (351)
                      +|+.||.|++|++...........+.+|...|++++|+        ++++ +|++++.||.|++||+ .++..  .....
T Consensus        28 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~   97 (342)
T 1yfq_A           28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI--------DNTDLQIYVGTVQGEILKVDLIGSPSF--QALTN   97 (342)
T ss_dssp             EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE--------ESSSEEEEEEETTSCEEEECSSSSSSE--EECBS
T ss_pred             EEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC--------CCCCcEEEEEcCCCeEEEEEeccCCce--Eeccc
Confidence            46789999999998833233445666899999999999        8899 9999999999999999 77654  22233


Q ss_pred             --cccceeeeEeeecCCeEEecCCceeEEEEEecc----------------ccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           79 --YRKEVISLASYIEGPVLVAGSSSYQVSVESLLI----------------GHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        79 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                        +...+.++.|++ +..+++++.++.+.++....                .|...|.+++|+|      ++        
T Consensus        98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~--------  162 (342)
T 1yfq_A           98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS------SR--------  162 (342)
T ss_dssp             CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS------SE--------
T ss_pred             cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC------Cc--------
Confidence              567889999999 99999999999888775322                2678899999994      32        


Q ss_pred             eEEeecCCeEEEEeccC-CCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCc-ccCcccccc
Q 048511          141 ILSASMDKTMMIWQPEK-TTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVD-IDNWQPQKV  217 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~  217 (351)
                      +++++.|+.|++||++. .........     ..+...+.+++|+| +++++++++.||.|++|+++... .........
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             EEEEeCCCeEEEEECCccccccceeee-----cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            88999999999999987 332222222     25677899999999 99999999999999999997651 000134556


Q ss_pred             cccccc---------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCC
Q 048511          218 PSGHFA---------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKG  287 (351)
Q Consensus       218 ~~~~~~---------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~  287 (351)
                      +..|..         .|.+++|+|++++|++++.||.|++||+.+++          .+..+..| ...|++++  +  +
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~h~~~v~~~~--~--~  303 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----------KIKNFAKFNEDSVVKIA--C--S  303 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EEEECCCCSSSEEEEEE--E--C
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh----------HhhhhhcccCCCceEec--C--C
Confidence            666654         99999999999999999999999999998876          56667777 88999999  7  8


Q ss_pred             CcEEEEecCCCe-EEEEe
Q 048511          288 NHRFVSGADEKV-ARVFE  304 (351)
Q Consensus       288 ~~~l~s~~~dg~-v~vw~  304 (351)
                      +.+|++++.||. .+.|.
T Consensus       304 ~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          304 DNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSEEEEEEECTHHHHCSS
T ss_pred             CCeEEEEecCCccccccc
Confidence            999999999998 55444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-32  Score=239.56  Aligned_cols=259  Identities=13%  Similarity=0.106  Sum_probs=205.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc------ccceeecccccceeeeEeeec--
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG------SSANTQSTYRKEVISLASYIE--   91 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~--   91 (351)
                      .....+.+|.+.|++++|+        +  ++|++++.||+|++|++.+..      ... ....+...+.++.|+++  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~--------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~   75 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSAC--------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY-SHFVHKSGLHHVDVLQAIE   75 (397)
T ss_dssp             EEEEESSCSSSCEEEEEEC--------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEE-EEECCTTCEEEEEEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEec--------C--CeEEEEcCCCEEEEEECCCcccccCCCcce-EEecCCCcEEEEEEecccc
Confidence            4566788999999999999        6  799999999999999999876      232 23355678899999999  


Q ss_pred             --C---CeEEecCCceeEEEE-------------Eecccc-----ccceEEEEecCCCCCCCCCcccCCCceeEEeecCC
Q 048511           92 --G---PVLVAGSSSYQVSVE-------------SLLIGH-----EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK  148 (351)
Q Consensus        92 --~---~~l~~~~~~~~~~~~-------------~~~~~h-----~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~  148 (351)
                        +   ..+++++.++.+.++             ..+..|     ...|.+++|++.... .....      |++++.|+
T Consensus        76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------l~~~~~dg  148 (397)
T 1sq9_A           76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHR------LVATDVKG  148 (397)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEE------EEEEETTS
T ss_pred             cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceE------EEEEeCCC
Confidence              9   999999888877654             345566     589999999921000 22223      88999999


Q ss_pred             eEEEEeccC------CCcceEE---EEE--eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          149 TMMIWQPEK------TTGIWMN---VVT--VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       149 ~i~iwd~~~------~~~~~~~---~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      .|++||++.      .+.....   .+.  ......+...|.+++|+|++ ++++++.|+.|++||+++.     +++..
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-----~~~~~  222 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-----RPLYN  222 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-----EEEEE
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-----ceeEE
Confidence            999999986      3222100   221  00113467889999999999 9999999999999999886     45677


Q ss_pred             ccc---c---cccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccc-------------ccc
Q 048511          218 PSG---H---FAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQV-------------HGH  275 (351)
Q Consensus       218 ~~~---~---~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~  275 (351)
                      +..   |   ...|.+++|+|++++|++++.|   +.|++||+++++          .+..+..             |..
T Consensus       223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE----------RIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC----------EEEEECBC--------CCBSBSS
T ss_pred             EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc----------ccceeccCcccccccccccccCC
Confidence            777   8   8999999999999999999999   999999998876          4444555             888


Q ss_pred             ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          276 DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      .|.+++|+|  ++.+|++++.||.|++||+. ++.+..+.
T Consensus       293 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          293 WVMSLSFND--SGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEECC--CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            999999999  89999999999999999987 76777776

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-32  Score=238.45  Aligned_cols=265  Identities=16%  Similarity=0.208  Sum_probs=202.5

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cccceeeeEeeec----CCeE
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YRKEVISLASYIE----GPVL   95 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~l   95 (351)
                      ...+|.+.|++++|+    |+.......+++++.++.|++||+.+++........    +...+.+++|+++    +.++
T Consensus        13 ~~~~h~~~v~~i~~~----p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           13 LKEDHNQPLFGVQFN----WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EECTTCSCEEEEEEC----TTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             eecCCCCceEEEEEe----cccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            344899999999999    210013456666666789999999977665444322    3467899999999    6789


Q ss_pred             EecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511           96 VAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus        96 ~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      ++++.++.+.++.        .+.+|...|.+++|+|     .++.+      |++++.|+.|++||++.  +.....+.
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~  155 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPNL------LLSVSKDHALRLWNIQT--DTLVAIFG  155 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS-----SCTTE------EEEEETTSCEEEEETTT--TEEEEEEC
T ss_pred             EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC-----CCCCE------EEEEeCCCeEEEEEeec--CeEEEEec
Confidence            9999998886654        4668999999999994     27888      99999999999999998  66555542


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC-----------------------ccccccccccccc
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN-----------------------WQPQKVPSGHFAA  224 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-----------------------~~~~~~~~~~~~~  224 (351)
                        ....|...|.+++|+|++++|++++.|+.|++||+++.+...                       .........|...
T Consensus       156 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          156 --GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             --STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             --ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence              123688899999999999999999999999999998753100                       0001122338899


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc----CccceEEeccccccccceeEEEEeeeCC--CcEEEEecCCC
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM----GENSWHEVARPQVHGHDINCVTIIQGKG--NHRFVSGADEK  298 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~dg  298 (351)
                      |.+++|+  +++|++++.|+.|++||+.+......    .......+..+..|...|++++|+|  +  +.+|++|+.||
T Consensus       234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~~l~~~~~dg  309 (366)
T 3k26_A          234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM--DFWQKMLALGNQVG  309 (366)
T ss_dssp             CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE--CTTSSEEEEECTTS
T ss_pred             EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC--CCCCcEEEEEecCC
Confidence            9999999  67999999999999999987653110    0112234566677888899999999  7  99999999999


Q ss_pred             eEEEEecC-chhhh
Q 048511          299 VARVFEAP-LSFLK  311 (351)
Q Consensus       299 ~v~vw~~~-~~~~~  311 (351)
                      .|++||+. ++...
T Consensus       310 ~i~vwd~~~~~~~~  323 (366)
T 3k26_A          310 KLYVWDLEVEDPHK  323 (366)
T ss_dssp             CEEEEECCSSSGGG
T ss_pred             cEEEEECCCCCCcc
Confidence            99999987 44433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.4e-32  Score=249.92  Aligned_cols=266  Identities=16%  Similarity=0.176  Sum_probs=216.5

Q ss_pred             CceEEEEEccCCC--ceEEEEeeeecCCc-eeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCC------c-cc
Q 048511            5 DNKIHLYRGQRTG--KFVRACELKGHTDW-IRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALR------G-SS   72 (351)
Q Consensus         5 dg~i~vw~~~~~~--~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~------~-~~   72 (351)
                      ++.|+||++.+ +  .......+.+|.+. |++++|+        +  ++++|++++.||+|++||+.++      . ..
T Consensus        38 ~~~v~v~~~~~-~~~~~~~~~~~~~h~~~~v~~~~~s--------p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~  108 (615)
T 1pgu_A           38 GKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFS--------PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV  108 (615)
T ss_dssp             TTEEEEEECCS-SCCSSCSEEEECTTTTSCEEEEEEC--------SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred             CCeEEEEECCC-CCCccccceEEecCCCceEEEEEEC--------cCCCCCEEEEecCCCEEEEEeCCCCcccccccccc
Confidence            78999999987 4  11245678899999 9999999        8  8999999999999999999754      1 22


Q ss_pred             ceeecccccceeeeEeeecCCeEEecCCc----eeEE------EEEeccccccceEEEEecCCCCCCCCCc-ccCCCcee
Q 048511           73 ANTQSTYRKEVISLASYIEGPVLVAGSSS----YQVS------VESLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSI  141 (351)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~------~~~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l  141 (351)
                      ......+...+.+++|+++++.+++++.+    +.+.      ....+.+|...|.+++|+      +++. +      +
T Consensus       109 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~------~~~~~~------l  176 (615)
T 1pgu_A          109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK------QSRPMR------S  176 (615)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC------SSSSCE------E
T ss_pred             cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEEC------CCCCcE------E
Confidence            22233356789999999999999987765    4443      345677899999999999      5665 7      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEecccccccc---ceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL---GFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      ++++.|+.|++||++.  +..+..+.     .|..   .|.+++|+|+ +++|++++.|+.|++||++++     +.+..
T Consensus       177 ~~~~~d~~v~vwd~~~--~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~  244 (615)
T 1pgu_A          177 MTVGDDGSVVFYQGPP--FKFSASDR-----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKY  244 (615)
T ss_dssp             EEEETTTEEEEEETTT--BEEEEEEC-----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-----CEEEE
T ss_pred             EEEeCCCcEEEEeCCC--cceeeeec-----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-----CEeEE
Confidence            9999999999999988  66666655     6777   8999999999 999999999999999999886     44666


Q ss_pred             c-c---cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccc----ccceeEEEEeeeCCCc
Q 048511          218 P-S---GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH----GHDINCVTIIQGKGNH  289 (351)
Q Consensus       218 ~-~---~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~  289 (351)
                      + .   .|...|.+++|+ ++++|++++.|+.|++||+++++          .+..+..+    ...+.++.|.   ++.
T Consensus       245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~---~~~  310 (615)
T 1pgu_A          245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK----------CVQKWTLDKQQLGNQQVGVVAT---GNG  310 (615)
T ss_dssp             CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE----------EEEEEECCTTCGGGCEEEEEEE---ETT
T ss_pred             ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc----------EEEEEcCCCCcccCceeEEEeC---CCC
Confidence            6 5   799999999999 99999999999999999998776          23333233    4567788885   488


Q ss_pred             EEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          290 RFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      ++++++.|+.|++||+. ++.+..+.+|.
T Consensus       311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  339 (615)
T 1pgu_A          311 RIISLSLDGTLNFYELGHDEVLKTISGHN  339 (615)
T ss_dssp             EEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred             eEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence            99999999999999987 66666666543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-33  Score=262.78  Aligned_cols=239  Identities=19%  Similarity=0.274  Sum_probs=197.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC--ccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI--SILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      +|+.||+|+|||+.. +....+..+.+|.+.|++++|+        ++  +++|++|+.||+|++||+.++...      
T Consensus        26 tg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s--------~~~~~~~l~s~s~Dg~I~vwd~~~~~~~------   90 (753)
T 3jro_A           26 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA--------HPKFGTILASCSYDGKVLIWKEENGRWS------   90 (753)
T ss_dssp             EEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEEC--------CTTSCSEEEEEETTSCEEEEEEETTEEE------
T ss_pred             EEECCCcEEEEecCC-CCCccceeccCCcCceEEEEec--------CCCCCCEEEEEeCCCeEEEEECCCCccc------
Confidence            477899999999986 5567788999999999999999        55  899999999999999998875311      


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCC--CcccCCCceeEEeecCCeEEEEecc
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSD--GVSCQQPSSILSASMDKTMMIWQPE  156 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~  156 (351)
                                                 ....+.+|...|.+++|+      ++  +.+      +++|+.||.|++||++
T Consensus        91 ---------------------------~~~~~~~h~~~V~~v~~s------p~~~~~~------l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           91 ---------------------------QIAVHAVHSASVNSVQWA------PHEYGPL------LLVASSDGKVSVVEFK  131 (753)
T ss_dssp             ---------------------------EEEEECCCSSCEEEEEEC------CGGGCSE------EEEEETTSEEEEEECC
T ss_pred             ---------------------------ccccccCCCCCeEEEEEC------CCCCCCE------EEEEeCCCcEEEEEee
Confidence                                       223457799999999999      56  788      9999999999999999


Q ss_pred             CCCcceEEEEEeccccccccceEEEEEcC-------------CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          157 KTTGIWMNVVTVGELSHSALGFYGGHWSP-------------DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      .........+.     .|...|.+++|+|             ++..+++++.||.|++||++++.. ...+...+.+|..
T Consensus       132 ~~~~~~~~~~~-----~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~  205 (753)
T 3jro_A          132 ENGTTSPIIID-----AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSD  205 (753)
T ss_dssp             SSSCCCCEEEE-----CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSS
T ss_pred             cCCCcceeEee-----cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCC
Confidence            84323333333     6788999999999             589999999999999999987531 1234567788999


Q ss_pred             cEEEEEeecC---CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          224 AVMDISWSRS---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       224 ~v~~v~~sp~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                      .|++++|+|+   +++|++++.||.|++||+..+..     ...........|...|++++|+|  ++.+|++|+.||.|
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~s~s~Dg~I  278 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----PWKKTLLKEEKFPDVLWRASWSL--SGNVLALSGGDNKV  278 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS-----CCBCCBSSSSCCSSCCCCEEECT--TTCCEEEECSSSCE
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC-----cceeEEeccCCCCCceEEEEEcC--CCCEEEEEcCCCEE
Confidence            9999999999   89999999999999999988641     11123334456788899999999  89999999999999


Q ss_pred             EEEecC
Q 048511          301 RVFEAP  306 (351)
Q Consensus       301 ~vw~~~  306 (351)
                      ++|++.
T Consensus       279 ~vwd~~  284 (753)
T 3jro_A          279 TLWKEN  284 (753)
T ss_dssp             ECCBCC
T ss_pred             EEEecC
Confidence            999987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=253.83  Aligned_cols=225  Identities=10%  Similarity=0.050  Sum_probs=175.4

Q ss_pred             EEEeeCCCcEEEEecCCCcccce---eecccccceeeeEeeec------CCeEEecCCceeEEEEEe-------------
Q 048511           52 LVSSSQDKVIRIWKLALRGSSAN---TQSTYRKEVISLASYIE------GPVLVAGSSSYQVSVESL-------------  109 (351)
Q Consensus        52 l~t~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~-------------  109 (351)
                      |++++.|++|+||++.+++....   ....+...+..++|+|+      +.+|++++.++.+++|..             
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            34466889999999987654221   12233457889999986      579999999998887753             


Q ss_pred             ------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE--
Q 048511          110 ------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG--  181 (351)
Q Consensus       110 ------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i--  181 (351)
                            +.+|...|++++|+      ++ ..      |++|+.||+|++||+++.. .....+.     .|...|.++  
T Consensus       256 ~~p~~~l~~h~~~v~sv~~s------~~-~~------lasgs~DgtV~lWD~~~~~-~~~~~~~-----~H~~~V~sv~~  316 (524)
T 2j04_B          256 EKPSLTLSLADSLITTFDFL------SP-TT------VVCGFKNGFVAEFDLTDPE-VPSFYDQ-----VHDSYILSVST  316 (524)
T ss_dssp             CSCSEEECCTTTCEEEEEES------SS-SE------EEEEETTSEEEEEETTBCS-SCSEEEE-----CSSSCEEEEEE
T ss_pred             cCceEEEEcCCCCEEEEEec------CC-Ce------EEEEeCCCEEEEEECCCCC-CceEEee-----cccccEEEEEE
Confidence                  34688899999999      43 36      9999999999999998721 2223333     788999999  


Q ss_pred             EEcCCC-CEEEEEeeCCeEEEEEcccCcccCcccccccccccc--cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511          182 HWSPDG-RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA--AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL  258 (351)
Q Consensus       182 ~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~  258 (351)
                      +|+|++ .+|++++.|++|+|||+++.     ++...+.+|..  .|.+++|+|+++.|++++.|++|++||++.+.   
T Consensus       317 ~~s~~g~~~laS~S~D~tvklWD~~~~-----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---  388 (524)
T 2j04_B          317 AYSDFEDTVVSTVAVDGYFYIFNPKDI-----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---  388 (524)
T ss_dssp             ECCTTSCCEEEEEETTSEEEEECGGGH-----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---
T ss_pred             EcCCCCCeEEEEeccCCeEEEEECCCC-----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---
Confidence            578887 89999999999999999886     34555656653  58899999999999999999999999998876   


Q ss_pred             cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhc
Q 048511          259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKT  312 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~  312 (351)
                             .+..+.+|...|++++|+|  ++.+|++|+.|++|++|++....+..
T Consensus       389 -------~~~~l~gH~~~V~sva~Sp--~g~~l~Sgs~Dgtv~lwd~~~~~~~~  433 (524)
T 2j04_B          389 -------AVHPLVSRETTITAIGVSR--LHPMVLAGSADGSLIITNAARRLLHG  433 (524)
T ss_dssp             -------CCEEEEECSSCEEEEECCS--SCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred             -------cceeeecCCCceEEEEeCC--CCCeEEEEECCCEEEEEechHhhccc
Confidence                   3334557999999999999  89999999999999999987655544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-32  Score=228.52  Aligned_cols=245  Identities=19%  Similarity=0.267  Sum_probs=204.4

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +.....+.+|.+.|++++|.         ++++|++++.||.|++||+.+....... ..+...+.+++|++++..++++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~~---------~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~   77 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVAV---------DDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSEKELLLFG   77 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEEE---------ETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETTTTEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEec---------CCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCCCCEEEEe
Confidence            46778999999999999995         4778999999999999999876554433 3446789999999999999999


Q ss_pred             CCceeEEEEE-----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511           99 SSSYQVSVES-----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus        99 ~~~~~~~~~~-----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      +.++.+.++.           .+.+|...|.++.|.        +++      |++++.|+.|++||  .  +.....+.
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~------l~~~~~d~~i~~~d--~--~~~~~~~~  139 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--------DGV------VISGSWDKTAKVWK--E--GSLVYNLQ  139 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--------TTE------EEEEETTSEEEEEE--T--TEEEEEEE
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--------CCE------EEEEeCCCCEEEEc--C--CcEEEecc
Confidence            9998886554           356788999999986        236      99999999999999  3  45555554


Q ss_pred             eccccccccceEEEEEcC-CCCEEEEEeeCCeEEEEEcccCcccCccccccccc-ccccEEEEEeecCCCEEEEEeCCCc
Q 048511          168 VGELSHSALGFYGGHWSP-DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSRSSDYLLSVSHDQT  245 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~  245 (351)
                           .|...+.+++|.| +++++++++.|+.|++||...       ....+.. |...|.+++|+|++. +++++.|+.
T Consensus       140 -----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~  206 (313)
T 3odt_A          140 -----AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL  206 (313)
T ss_dssp             -----CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSE
T ss_pred             -----cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCe
Confidence                 6888999999988 899999999999999999433       3455555 888999999999988 899999999


Q ss_pred             EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      |++||+++++          .+..+..|...|++++|+|  ++ .|++++.||.|++||+. ++.+..+..+.
T Consensus       207 i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          207 IKLVDMHTGD----------VLRTYEGHESFVYCIKLLP--NG-DIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             EEEEETTTCC----------EEEEEECCSSCEEEEEECT--TS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             EEEEECCchh----------hhhhhhcCCceEEEEEEec--CC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence            9999998876          5556668889999999999  67 69999999999999986 66666666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.6e-32  Score=261.53  Aligned_cols=259  Identities=16%  Similarity=0.203  Sum_probs=218.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|+|||+.+ +  ..+..+.+|.+.|++++|+        +++++|++++.||.|++||+.+++...... .+.
T Consensus        30 ~~~~~g~v~iwd~~~-~--~~~~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~   97 (814)
T 3mkq_A           30 TTLYSGRVEIWNYET-Q--VEVRSIQVTETPVRAGKFI--------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHP   97 (814)
T ss_dssp             EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred             EEeCCCEEEEEECCC-C--ceEEEEecCCCcEEEEEEe--------CCCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence            367899999999988 6  5667888999999999999        889999999999999999999887665443 456


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      ..+.+++|+|++..+++++.++.+.++.         .+.+|...|.+++|+|     .++..      |++++.||.|+
T Consensus        98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p-----~~~~~------l~~~~~dg~v~  166 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-----KDPST------FASGCLDRTVK  166 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET-----TEEEE------EEEEETTSEEE
T ss_pred             CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc-----CCCCE------EEEEeCCCeEE
Confidence            7899999999999999999998887664         3567899999999994     37888      99999999999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      +||+..  +.....+.    ..+...+.+++|+|  ++.++++++.||.|++||++++     .++..+.+|...|.+++
T Consensus       167 vwd~~~--~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~~~v~~~~  235 (814)
T 3mkq_A          167 VWSLGQ--STPNFTLT----TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEGHMSNVSFAV  235 (814)
T ss_dssp             EEETTC--SSCSEEEE----CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEEECCSSCEEEEE
T ss_pred             EEECCC--CcceeEEe----cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEEcCCCCCEEEEE
Confidence            999987  44444443    13447899999999  9999999999999999999886     45778888999999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc--EEEEecCCCeEEEEecC
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH--RFVSGADEKVARVFEAP  306 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~dg~v~vw~~~  306 (351)
                      |+|++++|++++.||.|++||+.++.          .+..+..|...+++++|+|  ++.  +++++ .|+.+.+|++.
T Consensus       236 ~~~~~~~l~~~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~  301 (814)
T 3mkq_A          236 FHPTLPIIISGSEDGTLKIWNSSTYK----------VEKTLNVGLERSWCIATHP--TGRKNYIASG-FDNGFTVLSLG  301 (814)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCS----------EEEEECCSSSSEEEEEECT--TCGGGEEEEE-ETTEEEEEECS
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCc----------EEEEeecCCCcEEEEEEcc--CCCceEEEEE-eCCCEEEEEcC
Confidence            99999999999999999999998876          5555667788899999999  665  45555 46667888865

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-32  Score=234.64  Aligned_cols=261  Identities=10%  Similarity=0.059  Sum_probs=202.1

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc--cceeecccccceeeeEeeecCC-eEEecC
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS--SANTQSTYRKEVISLASYIEGP-VLVAGS   99 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~l~~~~   99 (351)
                      ....+|.+.|++++|+        +++++|++++.|+.|++|++.++..  .......+...+.+++|++++. .+++++
T Consensus         5 ~~~~~h~~~v~~~~~s--------~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            5 QIEQAPKDYISDIKII--------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             ECSSCCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             ecccCCCCcEEEEEEc--------CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            3456899999999999        8899999999999999999987761  1122235567899999999999 999999


Q ss_pred             CceeEEEEEe--------ccc--cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE--EEE
Q 048511          100 SSYQVSVESL--------LIG--HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN--VVT  167 (351)
Q Consensus       100 ~~~~~~~~~~--------~~~--h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~  167 (351)
                      .++.+.++..        +.+  |...|.+++|+      + +.+      |++++.|+.|++||++........  ...
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~------~-~~~------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKY------G-DDK------LIAASWDGLIEVIDPRNYGDGVIAVKNLN  143 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE------T-TTE------EEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred             CCCeEEEEEeccCCceEeccccCCCCceEEEEeC------C-CCE------EEEEcCCCeEEEEcccccccccccccCCe
Confidence            9988888764        567  99999999999      7 777      999999999999998851111000  001


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc-CcccCcccccccccccccEEEEEeec-CCCEEEEEeCCCc
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVSHDQT  245 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~~dg~  245 (351)
                      +... .+...|.+++|+|++  +++++.|+.|++||+++ ...   ........|...|.+++|+| ++++|++++.||.
T Consensus       144 ~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          144 SNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             SSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             eeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc---cceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            1112 367789999999987  99999999999999987 431   12234446788999999999 9999999999999


Q ss_pred             EEEEcCCCccccccCccceEEecccccc---------ccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVH---------GHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      |++|++.......    .......+..|         ...|++++|+|  ++.+|++++.||.|++||+. ++.+..+..
T Consensus       218 i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          218 VAVEFFDDQGDDY----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EEEEECCTTCCST----TCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             EEEEEEcCCCccc----ccccceeeecccccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            9999998761000    00022222334         44899999999  89999999999999999987 777777766


Q ss_pred             c
Q 048511          316 A  316 (351)
Q Consensus       316 ~  316 (351)
                      +
T Consensus       292 ~  292 (342)
T 1yfq_A          292 F  292 (342)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=236.88  Aligned_cols=257  Identities=12%  Similarity=0.126  Sum_probs=198.3

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeC---CCcEEEEecCCCcccceeecccccceeeeEeeec---C
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQ---DKVIRIWKLALRGSSANTQSTYRKEVISLASYIE---G   92 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~   92 (351)
                      .....+.+|.+.|++++|+        +++. ++++++.   |+.|++||+.+++........+...+.++.|+++   +
T Consensus         9 ~~~~~~~~h~~~v~~~~~~--------p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   80 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWV--------PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ   80 (357)
T ss_dssp             EEEEEEEECSSCEEEEEEC--------TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT
T ss_pred             HhhhhccCCCCceEEEEEc--------CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC
Confidence            3445668899999999999        7675 5556665   9999999999887665555566778999999998   6


Q ss_pred             CeEEecCCceeEEEEE---------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc-e
Q 048511           93 PVLVAGSSSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI-W  162 (351)
Q Consensus        93 ~~l~~~~~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~  162 (351)
                      ..+++++.++.+.++.         .+.+|...|.++.|.|.-...+++++      |++++.|+.|++||++.  +. .
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~------l~~~~~d~~i~vwd~~~--~~~~  152 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE------IVTGSRDGTVKVWDPRQ--KDDP  152 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE------EEEEETTSCEEEECTTS--CSSC
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE------EEEEeCCCeEEEEeCCC--CCCc
Confidence            9999999888886654         45679999999966431000067788      99999999999999998  43 3


Q ss_pred             EEEEEeccccccccceEEEE----EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec---CCC
Q 048511          163 MNVVTVGELSHSALGFYGGH----WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR---SSD  235 (351)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~----~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~  235 (351)
                      ...+... .......+.+++    |+|+++++++++.|+.|++||+++.+     . .....|...|.+++|+|   ++.
T Consensus       153 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~-~~~~~~~~~v~~~~~~~~~~~~~  225 (357)
T 3i2n_A          153 VANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L-RWETNIKNGVCSLEFDRKDISMN  225 (357)
T ss_dssp             SEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E-EEEEECSSCEEEEEESCSSSSCC
T ss_pred             ceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e-eeecCCCCceEEEEcCCCCCCCC
Confidence            4444311 112234788888    78899999999999999999998864     2 33456888999999999   999


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecC
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAP  306 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~  306 (351)
                      +|++++.||.|++||+++.....    .+ .......|...|++++|+|  ++. +|++++.||.|++||+.
T Consensus       226 ~l~~~~~dg~i~i~d~~~~~~~~----~~-~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          226 KLVATSLEGKFHVFDMRTQHPTK----GF-ASVSEKAHKSTVWQVRHLP--QNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEEEEESTTEEEEEEEEEEETTT----EE-EEEEEECCSSCEEEEEEET--TEEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCeEEEEeCcCCCccc----ce-eeeccCCCcCCEEEEEECC--CCCcEEEEEeCCCcEEEeecC
Confidence            99999999999999998765211    11 1113347888999999999  777 89999999999999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-31  Score=238.21  Aligned_cols=252  Identities=19%  Similarity=0.318  Sum_probs=207.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ +  ..+..+.+|...|.++.|+          ++.|++++.||+|++||+.+++...... .+.
T Consensus       174 s~~~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~~~~~----------~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~  239 (445)
T 2ovr_B          174 SGSTDRTLKVWNAET-G--ECIHTLYGHTSTVRCMHLH----------EKRVVSGSRDATLRVWDIETGQCLHVLM-GHV  239 (445)
T ss_dssp             EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----------TTEEEEEETTSEEEEEESSSCCEEEEEE-CCS
T ss_pred             EEeCCCeEEEEECCc-C--cEEEEECCCCCcEEEEEec----------CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCc
Confidence            478899999999998 6  5677889999999999998          5689999999999999999877655443 345


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      ..+.++.+  ++..+++++.++.+.++.        .+.+|...|.++.|.        +..      +++++.|+.|++
T Consensus       240 ~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~------l~~~~~d~~i~i  303 (445)
T 2ovr_B          240 AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--------GIH------VVSGSLDTSIRV  303 (445)
T ss_dssp             SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------SSE------EEEEETTSCEEE
T ss_pred             ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--------CCE------EEEEeCCCeEEE
Confidence            56777777  788999999888887664        466799999999985        456      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc---ccccEEEEE
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG---HFAAVMDIS  229 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~---~~~~v~~v~  229 (351)
                      ||+++  +..+..+.     .|...+.++.+  +++++++++.||.|++||++++     +++..+..   |...|.+++
T Consensus       304 ~d~~~--~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~  369 (445)
T 2ovr_B          304 WDVET--GNCIHTLT-----GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-----QCLQTLQGPNKHQSAVTCLQ  369 (445)
T ss_dssp             EETTT--CCEEEEEC-----CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-----CEEEEECSTTSCSSCEEEEE
T ss_pred             EECCC--CCEEEEEc-----CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-----cEEEEEccCCCCCCCEEEEE
Confidence            99998  77666655     67778888877  4679999999999999999886     44555554   888999999


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCCCe----EEEE
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADEKV----ARVF  303 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~----v~vw  303 (351)
                      |+  +++|++++.||.|++||+.+++.       ...+.  ....|...|++++|+|  ++.++++|+.||.    |.||
T Consensus       370 ~~--~~~l~s~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~--~~~~la~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          370 FN--KNFVITSSDDGTVKLWDLKTGEF-------IRNLVTLESGGSGGVVWRIRASN--TKLVCAVGSRNGTEETKLLVL  438 (445)
T ss_dssp             EC--SSEEEEEETTSEEEEEETTTCCE-------EEEEEECTTGGGTCEEEEEEECS--SEEEEEEECSSSSSCCEEEEE
T ss_pred             EC--CCEEEEEeCCCeEEEEECCCCce-------eeeeeccccCCCCceEEEEEecC--CEEEEEEcccCCCCccEEEEE
Confidence            96  57999999999999999998872       11221  1246778899999999  8999999999997    9999


Q ss_pred             ecCc
Q 048511          304 EAPL  307 (351)
Q Consensus       304 ~~~~  307 (351)
                      |+..
T Consensus       439 df~~  442 (445)
T 2ovr_B          439 DFDV  442 (445)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-31  Score=231.54  Aligned_cols=263  Identities=15%  Similarity=0.159  Sum_probs=214.0

Q ss_pred             CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEE
Q 048511           17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLV   96 (351)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (351)
                      |.......+.+|.+.|++++|+        +++++|++++.||.|++||+.+++..... ..+...+.+++|+++++.++
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~   90 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYN--------KEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCFTKYCV   90 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEEC--------TTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccEEEEEeeceEEEEEEc--------CCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCCCCEEE
Confidence            5556778899999999999999        88999999999999999999987765544 34566889999999999999


Q ss_pred             ecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC-----CeEEEEeccCCCcceEE
Q 048511           97 AGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-----KTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        97 ~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~  164 (351)
                      +++.++.+.++...       ..|...|.+++|+      +++.+      |++++.+     +.|++||+.........
T Consensus        91 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFS------PCGNY------FLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECSSCEEEEEEC------TTSSE------EEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEc------cCCCE------EEEecCCccCCCCEEEEEEecCCccceee
Confidence            99999988877532       1277889999999      78888      9999998     99999999873221111


Q ss_pred             EEE----ecccccccc--ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE
Q 048511          165 VVT----VGELSHSAL--GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL  238 (351)
Q Consensus       165 ~~~----~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  238 (351)
                      ...    ......+..  .+.+++|+|++++|++++.||.|++||+++..    ..+..+..|...|.+++|+|++++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~  234 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSISDMQFSPDLTYFI  234 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCceeEEEECCCCCEEE
Confidence            000    000113333  89999999999999999999999999998732    56778888999999999999999999


Q ss_pred             EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC--------------eEEEEe
Q 048511          239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK--------------VARVFE  304 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--------------~v~vw~  304 (351)
                      +++.|+.|++||+++..          .+..+. +...+.+++|+|  ++.++++++.++              .+++||
T Consensus       235 ~~~~d~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d  301 (369)
T 3zwl_B          235 TSSRDTNSFLVDVSTLQ----------VLKKYE-TDCPLNTAVITP--LKEFIILGGGQEAKDVTTTSANEGKFEARFYH  301 (369)
T ss_dssp             EEETTSEEEEEETTTCC----------EEEEEE-CSSCEEEEEECS--SSSEEEEEECCC-------------CEEEEEE
T ss_pred             EecCCceEEEEECCCCc----------eeeeec-CCCCceeEEecC--CCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence            99999999999998876          333332 567799999999  899999999888              899999


Q ss_pred             cC-chhhhceeecc
Q 048511          305 AP-LSFLKTLNHAT  317 (351)
Q Consensus       305 ~~-~~~~~~~~~~~  317 (351)
                      .. ++.+..+.++.
T Consensus       302 ~~~~~~~~~~~~~~  315 (369)
T 3zwl_B          302 KIFEEEIGRVQGHF  315 (369)
T ss_dssp             TTTCCEEEEEECCS
T ss_pred             cCCCcchhheeccc
Confidence            86 66666666554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=7.4e-32  Score=224.92  Aligned_cols=253  Identities=9%  Similarity=0.015  Sum_probs=186.9

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCc-------------------ccCCCCC----ccEEEEeeCCCcE
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPV-------------------CTSGEAI----SILLVSSSQDKVI   61 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-------------------~~~~~~~----~~~l~t~~~dg~i   61 (351)
                      ..+|++|+..+..++++++++..|+.+|..|.+.|..                   .-+  ++    +.++++++.+  +
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s--pd~~~~~~~l~s~g~~--~  137 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS--SDDESEKQVLLKSGNI--K  137 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--E
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC--CCccccccEEEeCCCe--E
Confidence            4689999999855778899999999877777766410                   001  55    7888888754  8


Q ss_pred             EEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           62 RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        62 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      ++|++.+++.+......+...+..++++++|+.+.            .+.+|...++.++|+|-.   .++.+      |
T Consensus       138 ~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~------------s~~~~~~~v~~l~fs~~~---g~~~~------L  196 (356)
T 2w18_A          138 AVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE------------NQFLMPPEETILTFAEVQ---GMQEA------L  196 (356)
T ss_dssp             EEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE------------EEEECCCSSCEEEEEEEE---TSTTE------E
T ss_pred             EEEecCCCcEEEecccCCCCcEEEEEECCCCceee------------eeccCCCceeeEEeeccC---CCCce------E
Confidence            88999776665554455677888888888887654            455788889899998411   26678      9


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE------------EEEeeCCeEEEEEcccCcc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI------------LAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l------------~~~~~dg~i~~~d~~~~~~  209 (351)
                      ++++.|++|+|||+++  ++.+.++....  .+...+.+++|+|++.++            ++|+.|++|++||..+++ 
T Consensus       197 aSgS~D~TIkIWDl~T--Gk~l~tL~g~~--~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk-  271 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKT--GQLLKKMHIDD--SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL-  271 (356)
T ss_dssp             EEEETTSEEEEEETTT--CCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE-
T ss_pred             EEecCCCcEEEEECCC--CcEEEEEcCCC--cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE-
Confidence            9999999999999999  88888876211  123467888999999876            567889999999998873 


Q ss_pred             cCccccccc-----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee-EEEEe
Q 048511          210 DNWQPQKVP-----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN-CVTII  283 (351)
Q Consensus       210 ~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~  283 (351)
                          .+..+     .+|...+.+..+  ++.++++++.|++|+|||+.+++          .+..+.+|...+. +++|+
T Consensus       272 ----~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk----------~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          272 ----SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ----------CTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             ----EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS----------EEEEECCC--CCCCEEEEC
T ss_pred             ----EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCc----------EEEEecCCCCCeEEEEEEC
Confidence                22222     466655544444  47899999999999999999987          5666667776554 68999


Q ss_pred             eeCCCcEEEEecCCCeEEEEec
Q 048511          284 QGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       284 ~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      |  |+++|++|+.|++|+|||+
T Consensus       336 P--DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          336 G--TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             S--SSSEEEEECTTSCEEEEEE
T ss_pred             C--CCCEEEEEECCCcEEEecC
Confidence            9  9999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.5e-32  Score=274.41  Aligned_cols=264  Identities=16%  Similarity=0.269  Sum_probs=224.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-------
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-------   73 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-------   73 (351)
                      +|+.||.|++||+.+ +  ..+..+.+|.+.|++++|+        +++.+|++++.|++|++|++.+.....       
T Consensus       857 ~~~~dg~v~vwd~~~-~--~~~~~~~~h~~~v~~v~~s--------pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~  925 (1249)
T 3sfz_A          857 IALSQYCVELWNIDS-R--LKVADCRGHLSWVHGVMFS--------PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE  925 (1249)
T ss_dssp             EECSSSCEEEEETTT-T--EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred             EEeCCCeEEEEEcCC-C--ceeeecCCCccceEEEEEC--------CCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence            367899999999998 6  5677889999999999999        889999999999999999976421100       


Q ss_pred             -----------------------------eeecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccc
Q 048511           74 -----------------------------NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDW  116 (351)
Q Consensus        74 -----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~  116 (351)
                                                   .........+.+++++|++..++++..++.+.++.        .+.+|...
T Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~ 1005 (1249)
T 3sfz_A          926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005 (1249)
T ss_dssp             EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC
T ss_pred             eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc
Confidence                                         00011134577899999999999999998887665        45689999


Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG  196 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  196 (351)
                      |.+++|+      +++++      |++++.|+.|++||+.+  +....      ...|...|.+++|+|++ .+++++.|
T Consensus      1006 v~~l~~s------~dg~~------l~s~~~dg~i~vwd~~~--~~~~~------~~~~~~~v~~~~~~~~~-~l~~~~~d 1064 (1249)
T 3sfz_A         1006 VRHIQFT------ADGKT------LISSSEDSVIQVWNWQT--GDYVF------LQAHQETVKDFRLLQDS-RLLSWSFD 1064 (1249)
T ss_dssp             CCCEEEC------SSSSC------EEEECSSSBEEEEETTT--TEEEC------CBCCSSCEEEEEECSSS-EEEEEESS
T ss_pred             eEEEEEC------CCCCE------EEEEcCCCEEEEEECCC--CceEE------EecCCCcEEEEEEcCCC-cEEEEECC
Confidence            9999999      78899      99999999999999998  55432      23678899999999965 57889999


Q ss_pred             CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511          197 GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       197 g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      +.|++||+.++     .+...+.+|...|.+++|+|++++|++++.|+.|++||+.++.          .+..+.+|...
T Consensus      1065 g~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~----------~~~~l~~h~~~ 1129 (1249)
T 3sfz_A         1065 GTVKVWNVITG-----RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS----------PLHELKGHNGC 1129 (1249)
T ss_dssp             SEEEEEETTTT-----CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS----------CSBCCCCCSSC
T ss_pred             CcEEEEECCCC-----ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc----------eeeeeccCCCc
Confidence            99999999887     5677888999999999999999999999999999999998876          56677789999


Q ss_pred             eeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          277 INCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       277 i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      |++++|+|  ++.+|++|+.||.|++||+. ++.+..+
T Consensus      1130 v~~~~~s~--dg~~lat~~~dg~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1130 VRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp             EEEEEECS--SSSEEEEEETTSCCCEEESSSSCCCCCC
T ss_pred             EEEEEECC--CCCEEEEEeCCCEEEEEECCCCceEEEe
Confidence            99999999  99999999999999999987 6666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=234.99  Aligned_cols=232  Identities=10%  Similarity=0.080  Sum_probs=168.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++||+.+ ++.  +..+.  ...|.++.|+        +.   +++++.|++|++|+.............  
T Consensus        53 sg~~Dg~v~iwd~~~-~~~--~~~~~--~~~v~~~~~~--------~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~--  114 (343)
T 3lrv_A           53 CRCEDGALHFTQLKD-SKT--ITTIT--TPNPRTGGEH--------PA---IISRGPCNRLLLLYPGNQITILDSKTN--  114 (343)
T ss_dssp             EEEETTEEEEEEESS-SSC--EEEEE--EECCCTTCCC--------CS---EEEECSTTEEEEEETTTEEEEEETTTC--
T ss_pred             EECCCCcEEEEECCC-CcE--EEEEe--cCCceeeeeC--------Cc---eEEecCCCeEEEEEccCceEEeecCCc--
Confidence            467888888888887 543  22333  4567777777        54   888888888888887642111110000  


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCC--CCcccCCCceeEEeecCCeEEEEeccCC
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPS--DGVSCQQPSSILSASMDKTMMIWQPEKT  158 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~  158 (351)
                                            . .+.....+|.+.|.+++|+      +  ++++      |++++.|++|++||+++ 
T Consensus       115 ----------------------~-~~~~~~~~~~~~v~~~~~~------~~~~~~~------l~s~s~dg~i~~wd~~~-  158 (343)
T 3lrv_A          115 ----------------------K-VLREIEVDSANEIIYMYGH------NEVNTEY------FIWADNRGTIGFQSYED-  158 (343)
T ss_dssp             ----------------------C-EEEEEECCCSSCEEEEECC------C---CCE------EEEEETTCCEEEEESSS-
T ss_pred             ----------------------c-eeEEeecCCCCCEEEEEcC------CCCCCCE------EEEEeCCCcEEEEECCC-
Confidence                                  0 0112223577899999999      6  7888      99999999999999998 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc-ccccc-ccccEEEEEeecCCCE
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ-KVPSG-HFAAVMDISWSRSSDY  236 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~~-~~~~v~~v~~sp~~~~  236 (351)
                       +.......    ..+...+.+++|+|++.+|++|+.||.|++||+++++     .. ..+.. |...|++++|+|++.+
T Consensus       159 -~~~~~~~~----~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          159 -DSQYIVHS----AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             -SCEEEEEC----CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT-----SCCEECCCCTTSCEEEEEECTTSSE
T ss_pred             -CcEEEEEe----cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC-----CCccEEeccCCCCEEEEEEeCCCCE
Confidence             65544332    2345579999999999999999999999999999874     33 56677 9999999999999999


Q ss_pred             EEEEeCCCcEEEEcCCCccccccCccceEEecccccccccee--EEEEeeeCCCcEEEEecC-CCeEEEEecC
Q 048511          237 LLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDIN--CVTIIQGKGNHRFVSGAD-EKVARVFEAP  306 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~l~s~~~-dg~v~vw~~~  306 (351)
                      |++++ |+.|++||++.....       ..+..+..|...+.  +++|+|  ++.+|++++. |+.|+||++.
T Consensus       229 l~s~~-~~~v~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          229 MVVEC-DQTVVCFDLRKDVGT-------LAYPTYTIPEFKTGTVTYDIDD--SGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             EEEEE-SSBEEEEETTSSTTC-------BSSCCCBC-----CCEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEe-CCeEEEEEcCCCCcc-------eeecccccccccccceEEEECC--CCCEEEEecCCCCcEEEEEEc
Confidence            99999 559999999887621       12222222334444  699999  9999999888 9999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-31  Score=236.38  Aligned_cols=252  Identities=19%  Similarity=0.234  Sum_probs=203.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce------
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN------   74 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~------   74 (351)
                      +|+.||+|++||+++ +  ..+..+.+|.+.|.+++|+    +.  +++.+|++++.|++|++||+.+......      
T Consensus       178 s~s~dg~i~vwd~~~-~--~~~~~~~~h~~~v~~l~~~----~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  248 (464)
T 3v7d_B          178 SGSTDRTVRVWDIKK-G--CCTHVFEGHNSTVRCLDIV----EY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD  248 (464)
T ss_dssp             EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----ES--SSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred             EEeCCCCEEEEECCC-C--cEEEEECCCCCccEEEEEe----cC--CCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence            478999999999998 7  5677889999999999998    43  5678999999999999999987654321      


Q ss_pred             ----------------eecccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCC
Q 048511           75 ----------------TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPS  130 (351)
Q Consensus        75 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~  130 (351)
                                      ....+...  ...+++++..+++++.++.+.++.        .+.+|...|.+++|+      +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~------~  320 (464)
T 3v7d_B          249 YPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD------H  320 (464)
T ss_dssp             SSEEESCGGGCTTEEEEECCCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------T
T ss_pred             cceEeeccCCCeEEEEEccCccce--EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc------C
Confidence                            11112222  233478899999999988886654        467899999999999      7


Q ss_pred             CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511          131 DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID  210 (351)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  210 (351)
                      +++.      |++|+.|+.|++||+++  +..+..+.     .|...|.+++|+  +.++++++.||.|++||+++..  
T Consensus       321 ~~~~------l~sg~~dg~i~vwd~~~--~~~~~~~~-----~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--  383 (464)
T 3v7d_B          321 ERKR------CISASMDTTIRIWDLEN--GELMYTLQ-----GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--  383 (464)
T ss_dssp             TTTE------EEEEETTSCEEEEETTT--TEEEEEEC-----CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--
T ss_pred             CCCE------EEEEeCCCcEEEEECCC--CcEEEEEe-----CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--
Confidence            8888      99999999999999998  77777665     788899999997  5899999999999999998863  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-ccccccceeEEEEeeeCCCc
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQVHGHDINCVTIIQGKGNH  289 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~  289 (351)
                         ..... .+...+..++|+|++++|++++ |+.|++||+++++          .+.. ...|...|++++|+.   ..
T Consensus       384 ---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~----------~~~~~~~~~~~~v~~v~~~~---~~  445 (464)
T 3v7d_B          384 ---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK----------LVHANILKDADQIWSVNFKG---KT  445 (464)
T ss_dssp             ---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC----------EEESCTTTTCSEEEEEEEET---TE
T ss_pred             ---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc----------EEehhhccCCCcEEEEEecC---CE
Confidence               22222 3566788899999999999998 8999999999887          4433 556788899999974   77


Q ss_pred             EEEEecCCCeEEEEe
Q 048511          290 RFVSGADEKVARVFE  304 (351)
Q Consensus       290 ~l~s~~~dg~v~vw~  304 (351)
                      ++++++.||.+.+|-
T Consensus       446 l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          446 LVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCeEEEEE
Confidence            788888888776664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=235.48  Aligned_cols=250  Identities=15%  Similarity=0.140  Sum_probs=198.7

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCC---ccEEEEeeCCCcEEEEecCC-CcccceeecccccceeeeEeeecCCeE
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAI---SILLVSSSQDKVIRIWKLAL-RGSSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~---~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      ..+..+.+|.+.|++++|+        ++   +++|++++.||.|++||+.+ +.........+...+.+++|++++..+
T Consensus        30 ~~~~~~~~h~~~v~~~~~~--------~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFS--------PPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CCEECSSCCSSCEEEEEEC--------CTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             ceeEeccCCCCceEEEEEc--------CCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence            4567889999999999999        66   69999999999999999997 444435555667889999999999999


Q ss_pred             EecCCceeEEEEEe-------ccccccceEEEEe--cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEE
Q 048511           96 VAGSSSYQVSVESL-------LIGHEDWVYSVQW--EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVV  166 (351)
Q Consensus        96 ~~~~~~~~~~~~~~-------~~~h~~~v~~l~~--~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  166 (351)
                      ++++.++.+.+|..       +.+|...|.+++|  +      +++.+      |++++.|+.|++||+++  +..+..+
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~------l~~~~~dg~i~vwd~~~--~~~~~~~  167 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA------PNYSC------VMTGSWDKTLKFWDTRS--SNPMMVL  167 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEEC------SSCEE------EEEEETTSEEEEECSSC--SSCSEEE
T ss_pred             EEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeC------CCCCE------EEEccCCCcEEEEECCC--CcEEEEE
Confidence            99999998887753       4568999999999  6      68888      99999999999999987  4433333


Q ss_pred             Eecc------------------------------------ccccccceEEEEEcCCCCE----EEEEeeCCeEEEEEccc
Q 048511          167 TVGE------------------------------------LSHSALGFYGGHWSPDGRS----ILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       167 ~~~~------------------------------------~~~~~~~i~~i~~~~~~~~----l~~~~~dg~i~~~d~~~  206 (351)
                      ....                                    .......+.++++.++...    +++++.|+.|++||++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~  247 (368)
T 3mmy_A          168 QLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP  247 (368)
T ss_dssp             ECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred             ecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence            2110                                    0011233455555554443    99999999999999987


Q ss_pred             CcccCcccccccccccc------------cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc
Q 048511          207 VDIDNWQPQKVPSGHFA------------AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG  274 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~------------~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  274 (351)
                      ...  ......+..|..            .|++++|+|++++|++++.||.|++||+.+++          .+..+..|.
T Consensus       248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~  315 (368)
T 3mmy_A          248 PNP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART----------KLKTSEQLD  315 (368)
T ss_dssp             SCH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EEEECCCCS
T ss_pred             CCc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc----------EEEEecCCC
Confidence            531  023455566655            79999999999999999999999999998876          566677889


Q ss_pred             cceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          275 HDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       275 ~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ..|++++|+|  ++.+|++++.|+..+.|++
T Consensus       316 ~~v~~~~~s~--~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          316 QPISACCFNH--NGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             SCEEEEEECT--TSSCEEEEECCCSTTCGGG
T ss_pred             CCceEEEECC--CCCeEEEEecccccccccc
Confidence            9999999999  9999999999986666653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.1e-32  Score=242.29  Aligned_cols=238  Identities=15%  Similarity=0.147  Sum_probs=162.7

Q ss_pred             CCCCCceEEEEEccCCCceE---EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFV---RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      +|+.|++|+|||.+. ++..   .+..+.+|.+.|++|+|+|........++++|||+|.|++|+|||+.++...     
T Consensus       106 s~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~-----  179 (393)
T 4gq1_A          106 CVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI-----  179 (393)
T ss_dssp             EEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE-----
T ss_pred             EEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee-----
Confidence            478899999999998 5432   3445789999999999992111000027899999999999999999765432     


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                                                    ..+.+|..+|.+++|+|     .+..+      |++++.|++|++||+++
T Consensus       180 ------------------------------~~~~~~~~~v~~v~~~p-----~~~~~------l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          180 ------------------------------LAGYPLSSPGISVQFRP-----SNPNQ------LIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             ------------------------------EEEEECSSCEEEEEEET-----TEEEE------EEEEETTSEEEEEETTC
T ss_pred             ------------------------------eeecCCCCCcEEEEECC-----CCCce------EEecCCCCEEEEEECCC
Confidence                                          22345888999999995     33457      99999999999999987


Q ss_pred             CCcceEEEEE--------------------eccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511          158 TTGIWMNVVT--------------------VGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       158 ~~~~~~~~~~--------------------~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  216 (351)
                        +.......                    ......|...+.++.|+ |+++.+++++.|+++++||+..+.     ...
T Consensus       219 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-----~~~  291 (393)
T 4gq1_A          219 --NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-----DYN  291 (393)
T ss_dssp             --CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred             --CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-----CCc
Confidence              33221111                    00123566778889886 799999999999999999997753     233


Q ss_pred             ccccccccEEEE------------------Eeec--CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511          217 VPSGHFAAVMDI------------------SWSR--SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       217 ~~~~~~~~v~~v------------------~~sp--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      .+..|...+..+                  .|+|  ++.++++|+.||.|++||+.++.          ....+..|..+
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----------~~~~~~~~~~~  361 (393)
T 4gq1_A          292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD----------SNSIPIQLGMP  361 (393)
T ss_dssp             ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT----------CCEEEEECSSC
T ss_pred             eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc----------EEEEecCCCCc
Confidence            333333333333                  2333  33467788899999999998876          33344567788


Q ss_pred             eeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          277 INCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       277 i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      |++++|+|  +|++||++++||. .+|++
T Consensus       362 V~svafsp--dG~~LA~as~~Gv-~lvrL  387 (393)
T 4gq1_A          362 IVDFCWHQ--DGSHLAIATEGSV-LLTRL  387 (393)
T ss_dssp             EEEEEECT--TSSEEEEEESSEE-EEEEE
T ss_pred             EEEEEEcC--CCCEEEEEeCCCe-EEEEE
Confidence            99999999  9999999988774 55553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-31  Score=235.56  Aligned_cols=238  Identities=10%  Similarity=0.043  Sum_probs=187.9

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecC--CCcccceeec-ccccceeeeEeeecCCeEEecCCce
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLA--LRGSSANTQS-TYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      +|.+.|++++|+        +++++| ++++.||.|++||+.  ++.....+.. .....+.+++|+|++..|++++.++
T Consensus       100 ~~~~~v~~~~~s--------~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g  171 (450)
T 2vdu_B          100 PIYSYIRNLRLT--------SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG  171 (450)
T ss_dssp             CCCCCEEEEEEC--------TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCceEEEEEc--------CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence            344579999999        889886 899999999999998  6666554432 3356788999999999999998888


Q ss_pred             eEEEEE------------eccccccceEEEEecCCCCCCCC---CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511          103 QVSVES------------LLIGHEDWVYSVQWEPPSTAPSD---GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus       103 ~~~~~~------------~~~~h~~~v~~l~~~p~~~~~~~---~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      .+..+.            .+.+|...|.+++|+      ++   +++      |++++.|+.|++||++.  +..+..+.
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s------p~~~~~~~------l~s~~~d~~i~vwd~~~--~~~~~~~~  237 (450)
T 2vdu_B          172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI------KDSDGHQF------IITSDRDEHIKISHYPQ--CFIVDKWL  237 (450)
T ss_dssp             EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE------ECTTSCEE------EEEEETTSCEEEEEESC--TTCEEEEC
T ss_pred             cEEEEecCCcccccccceeeecccCceEEEEEc------CCCCCCcE------EEEEcCCCcEEEEECCC--Cceeeeee
Confidence            776654            456789999999999      67   778      99999999999999998  65555432


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-------------------------ccc
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-------------------------GHF  222 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------------------------~~~  222 (351)
                          .+|...|.+++|+ ++++|++++.|+.|++||+++++     ++..+.                         ...
T Consensus       238 ----~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          238 ----FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK-----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             ----CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC-----EEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             ----cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc-----Eeeeecchhhhhhhhhhcccccccccccccccce
Confidence                3688899999999 99999999999999999998864     233332                         233


Q ss_pred             ccEEEEEeecCCCEEEEEe-CCCcEEEEcC--CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC---
Q 048511          223 AAVMDISWSRSSDYLLSVS-HDQTTRVFAP--WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD---  296 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---  296 (351)
                      ..|.+++|+|++++|++++ .|+.|+||++  ....       .+..+..+..| ..|.+++|+|  ++.++++++.   
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~-------~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~  377 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG-------DLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESS  377 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT-------CEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCC
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC-------ceeeccEeccC-CceEEEEecC--CcEEEEEecccCC
Confidence            5689999999999999998 8999999999  4432       23355555566 6799999999  5544444443   


Q ss_pred             ---CCeEEEEecC
Q 048511          297 ---EKVARVFEAP  306 (351)
Q Consensus       297 ---dg~v~vw~~~  306 (351)
                         +..|.+|.+.
T Consensus       378 ~~~~~~i~v~~~~  390 (450)
T 2vdu_B          378 GVQKNFAKFIEYN  390 (450)
T ss_dssp             SSCCCSEEEEEEE
T ss_pred             CCCCcceEEEEEE
Confidence               5568999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-31  Score=229.82  Aligned_cols=239  Identities=18%  Similarity=0.213  Sum_probs=188.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcc-cceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGS-SANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~   79 (351)
                      +|+.||.|+|||+.. +....+..+.+|.+.|++++|+    ++  .++++|++++.||.|++||+.++.. .......+
T Consensus        28 ~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~----~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  100 (379)
T 3jrp_A           28 TCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWA----HP--KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH  100 (379)
T ss_dssp             EEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEEC----CG--GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred             EEECCCcEEEEecCC-CcceeeeEecCCCCcEEEEEeC----CC--CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence            467899999999986 5557788899999999999998    21  2389999999999999999998763 22233345


Q ss_pred             ccceeeeEeeec--CCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCC-------CCCCcccCCCce
Q 048511           80 RKEVISLASYIE--GPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTA-------PSDGVSCQQPSS  140 (351)
Q Consensus        80 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~-------~~~~~~~~~~~~  140 (351)
                      ...+.+++|+++  +..++++..++.+.++..          +.+|...|.+++|+|....       .+++.+      
T Consensus       101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------  174 (379)
T 3jrp_A          101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK------  174 (379)
T ss_dssp             SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE------
T ss_pred             CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE------
Confidence            678999999999  999999999998877653          4468889999999952100       005778      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC---CCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---GRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      |++++.|+.|++||++..........   ....|...|.+++|+|+   +++|++++.||.|++||+++...........
T Consensus       175 l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  251 (379)
T 3jrp_A          175 FVTGGADNLVKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK  251 (379)
T ss_dssp             EEEEETTSCEEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred             EEEEeCCCeEEEEEecCCCcceeeEE---EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence            99999999999999987332211111   13378889999999999   8999999999999999998864221123444


Q ss_pred             cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          218 PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       218 ~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ...|...|++++|+|++++|++++.||.|++|++....
T Consensus       252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            45588899999999999999999999999999997543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-30  Score=225.00  Aligned_cols=233  Identities=14%  Similarity=0.207  Sum_probs=187.5

Q ss_pred             CCCCCceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCCcc------
Q 048511            1 MGGLDNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALRGS------   71 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~------   71 (351)
                      +|+.||+|++||+... ........+.+|...|++++|+        +  ++++|++++.||+|++||+..+..      
T Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   99 (351)
T 3f3f_A           28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA--------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRR   99 (351)
T ss_dssp             EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEEC--------CGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred             EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEc--------CCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence            4788999999999861 2335677889999999999999        5  589999999999999999987642      


Q ss_pred             --cceeecccccceeeeEeeec--CCeEEecCCceeEEEEEec---------------------cccccceEEEEecCCC
Q 048511           72 --SANTQSTYRKEVISLASYIE--GPVLVAGSSSYQVSVESLL---------------------IGHEDWVYSVQWEPPS  126 (351)
Q Consensus        72 --~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~---------------------~~h~~~v~~l~~~p~~  126 (351)
                        .......+...+.++.|+++  +..+++++.++.+.++...                     .+|...+.+++|+|..
T Consensus       100 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  179 (351)
T 3f3f_A          100 WNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSR  179 (351)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCS
T ss_pred             cceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCC
Confidence              12233345678899999999  9999999999999888742                     1577889999999532


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC----CEEEEEeeCCeEEEE
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG----RSILAHGYGGAFHLW  202 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg~i~~~  202 (351)
                         .++.+      |++++.|+.+.+|+...  +......   ....|...|.+++|+|++    ++|++++.||.|++|
T Consensus       180 ---~~~~~------l~~~~~~~~~~~~~~~~--~~~~~~~---~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw  245 (351)
T 3f3f_A          180 ---FSPEK------LAVSALEQAIIYQRGKD--GKLHVAA---KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF  245 (351)
T ss_dssp             ---SSCCE------EEEEETTEEEEEEECTT--SCEEEEE---ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred             ---CCCcE------EEEecCCCcEEEEccCC--Cceeeee---ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence               23677      99999999998888776  4332111   133788899999999998    899999999999999


Q ss_pred             EcccCccc-----------------------------------------CcccccccccccccEEEEEeecCCCEEEEEe
Q 048511          203 RNVGVDID-----------------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       203 d~~~~~~~-----------------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      |++.....                                         ...++..+.+|...|++++|+|++++|++++
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  325 (351)
T 3f3f_A          246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG  325 (351)
T ss_dssp             EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred             eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence            99874210                                         1134566778999999999999999999999


Q ss_pred             CCCcEEEEcCCCcc
Q 048511          242 HDQTTRVFAPWKNV  255 (351)
Q Consensus       242 ~dg~i~vwd~~~~~  255 (351)
                      .||.|++||+..++
T Consensus       326 ~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          326 DDGKVRLWKATYSN  339 (351)
T ss_dssp             TTSCEEEEEECTTS
T ss_pred             CCCcEEEEecCcCc
Confidence            99999999998775

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.98  E-value=1.2e-30  Score=230.03  Aligned_cols=268  Identities=17%  Similarity=0.232  Sum_probs=178.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEee-----------eecCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCC
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACEL-----------KGHTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLAL   68 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~   68 (351)
                      +|+.||.|++||+.+ ++.......           .+|...|.+++|+        + ++.+|++++.||.|++||+.+
T Consensus        61 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~  131 (408)
T 4a11_B           61 SGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY--------PHDTGMFTSSSFDKTLKVWDTNT  131 (408)
T ss_dssp             EEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC--------TTCTTCEEEEETTSEEEEEETTT
T ss_pred             EEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEc--------cCCCcEEEEEeCCCeEEEeeCCC
Confidence            477899999999987 432111111           2599999999999        6 678999999999999999998


Q ss_pred             CcccceeecccccceeeeEeeec---CCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCc-ccC
Q 048511           69 RGSSANTQSTYRKEVISLASYIE---GPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGV-SCQ  136 (351)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~-~~~  136 (351)
                      ++......  ....+..+.+.+.   +..++++..++.+.++.        .+.+|...|.+++|+      +++. +  
T Consensus       132 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l--  201 (408)
T 4a11_B          132 LQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS------PRYDYI--  201 (408)
T ss_dssp             TEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC------SSCTTE--
T ss_pred             Cccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC------CCCCcE--
Confidence            77665544  3446777777774   45899998888887765        356799999999999      5655 6  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEE----------eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVT----------VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~  206 (351)
                          |++++.||.|++||++.... ....+.          ......|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       202 ----l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          202 ----LATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             ----EEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ----EEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence                88999999999999987321 222211          011136778899999999999999999999999999987


Q ss_pred             Cccc------------------------------------------CcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511          207 VDID------------------------------------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       207 ~~~~------------------------------------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      ++..                                          ...++..+.+|...|++++|+|++++|++++.||
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  356 (408)
T 4a11_B          277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC  356 (408)
T ss_dssp             CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence            5421                                          1133445667999999999999999999999999


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .|++||+.+.+          .+.....+.   ....+.+ .....+.+.+.|+.+++|+.+
T Consensus       357 ~i~iw~~~~~~----------~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          357 NILAWVPSLYE----------PVPDDDETT---TKSQLNP-AFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             CEEEEEECC-----------------------------------------------------
T ss_pred             eEEEEeCCCCC----------ccCCCCceE---ecccccc-ccceeecccCccCceeecCCc
Confidence            99999998876          222222111   1223333 134566778889999999865

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=9.7e-30  Score=225.50  Aligned_cols=218  Identities=20%  Similarity=0.308  Sum_probs=185.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|+|||+++ +  ..+..+.+|...|.++.++          +.+|++|+.|+.+++||.............+.
T Consensus       164 sgs~Dg~v~iWd~~~-~--~~~~~~~~h~~~v~~~s~~----------~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~  230 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQ-Q--KRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  230 (420)
T ss_dssp             EEETTSCEEEEETTT-T--EEEEEECCCSSCEEEEEEE----------TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEECCCeEEEEEcCC-C--cEEEEEeCCCCceEEEeeC----------CCEEEEEeCCCceeEeeecccceeeEEecccc
Confidence            478999999999998 7  5677899999999999887          67999999999999999988766655556667


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEE--eec
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS--ASM  146 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s--~~~  146 (351)
                      ..+..+.+++++..++++..++.+.++..            ...|...|.+++|+|     .+..+      +++  |+.
T Consensus       231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p-----~~~~~------la~~~gs~  299 (420)
T 4gga_A          231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-----WQSNV------LATGGGTS  299 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECT-----TCTTE------EEEEECTT
T ss_pred             cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCC-----CcccE------EEEEeecC
Confidence            78899999999999999999988877653            456888999999996     34444      555  457


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCccccccccccccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      |++|++||+++  +.....+.      ....+.++.|+|+++.+++++  .|+.|++||+.+.     +++..+.+|.+.
T Consensus       300 D~~I~iwd~~t--~~~~~~~~------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-----~~v~~l~gH~~~  366 (420)
T 4gga_A          300 DRHIRIWNVCS--GACLSAVD------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSR  366 (420)
T ss_dssp             TCEEEEEETTT--TEEEEEEE------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSC
T ss_pred             CCEEEEEeCCc--cccceeec------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-----cEEEEEcCCCCC
Confidence            99999999998  77766654      345789999999999888765  6899999999886     568899999999


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      |++++|+|+|++|+||+.|++|+|||+....
T Consensus       367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          367 VLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999999999999999999999999997654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.2e-30  Score=225.40  Aligned_cols=235  Identities=17%  Similarity=0.259  Sum_probs=191.8

Q ss_pred             eeecCCc--eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           25 LKGHTDW--IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        25 ~~~h~~~--V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      ..+|...  +.++.|+          +..+++++.|+.|++||+.++.........+...+.+++|++++..++++..++
T Consensus        87 ~~~~~~~~~~~~~~~s----------~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  156 (401)
T 4aez_A           87 APGIIDDYYLNLLDWS----------NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG  156 (401)
T ss_dssp             CTTCCCCTTCBCEEEC----------TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcCCceEEEEeec----------CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence            3355554  3445555          456888999999999999998877666665677899999999999999999888


Q ss_pred             eEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511          103 QVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       103 ~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                      .+.++.        .+.+|...|.+++|+      +  ++      |++++.|+.|++||++.. ......+.     .|
T Consensus       157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~------~--~~------l~~~~~dg~i~i~d~~~~-~~~~~~~~-----~~  216 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAGHQARVGCLSWN------R--HV------LSSGSRSGAIHHHDVRIA-NHQIGTLQ-----GH  216 (401)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEEE------T--TE------EEEEETTSEEEEEETTSS-SCEEEEEE-----CC
T ss_pred             eEEEEECcCCeEEEEecCCCCceEEEEEC------C--CE------EEEEcCCCCEEEEecccC-cceeeEEc-----CC
Confidence            887664        466899999999997      2  36      999999999999999852 34444444     78


Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC-EEEEEe--CCCcEEEEcC
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS--HDQTTRVFAP  251 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~--~dg~i~vwd~  251 (351)
                      ...|.+++|+|++++|++++.|+.|++||+++.     .++..+..|...|.+++|+|++. ++++++  .|+.|++||+
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~  291 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA  291 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence            889999999999999999999999999999986     55777888999999999999764 556654  7999999999


Q ss_pred             CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE--ecCCCeEEEEecCc
Q 048511          252 WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS--GADEKVARVFEAPL  307 (351)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s--~~~dg~v~vw~~~~  307 (351)
                      .++.          .+..+ .+...|.+++|+|  ++.+|++  |+.||.|++|++..
T Consensus       292 ~~~~----------~~~~~-~~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          292 ATGA----------RVNTV-DAGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             TTCC----------EEEEE-ECSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCCC----------EEEEE-eCCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCC
Confidence            8876          33333 2556799999999  8999988  66999999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-30  Score=248.39  Aligned_cols=248  Identities=11%  Similarity=0.020  Sum_probs=185.5

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc--eee--------cccccceeeeEeeecCCeE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA--NTQ--------STYRKEVISLASYIEGPVL   95 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~l   95 (351)
                      .+|...+.+++|+        +++++|+||+.|++|++||+.++....  ...        ..+...+.+++|+|+++.|
T Consensus       432 ~G~~~~v~sv~~s--------pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~L  503 (902)
T 2oaj_A          432 KGGVRTKRQKLPA--------EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLEL  503 (902)
T ss_dssp             CCSBCCCCCCCCC--------SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEE
T ss_pred             cCCcCCCCccccc--------ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeE
Confidence            3444444455555        789999999999999999998874321  011        1445679999999999999


Q ss_pred             EecCCceeEEEEE-----------------------------------------------------eccccccceEEEEe
Q 048511           96 VAGSSSYQVSVES-----------------------------------------------------LLIGHEDWVYSVQW  122 (351)
Q Consensus        96 ~~~~~~~~~~~~~-----------------------------------------------------~~~~h~~~v~~l~~  122 (351)
                      ++++.++.+++|.                                                     .+.+|.+.|++++|
T Consensus       504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf  583 (902)
T 2oaj_A          504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN  583 (902)
T ss_dssp             EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred             EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence            9999888876654                                                     34569999999999


Q ss_pred             cCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc-ccccceEEEEEc-----CCC---CEEEEE
Q 048511          123 EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWS-----PDG---RSILAH  193 (351)
Q Consensus       123 ~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~-----~~~---~~l~~~  193 (351)
                      +      ++| +      ||+|+.|++|+|||++.  +..+....+.... +|...|++++|+     |||   ++|+++
T Consensus       584 S------pdG-~------lAsgs~D~tv~lwd~~~--~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg  648 (902)
T 2oaj_A          584 S------NIG-F------VGIAYAAGSLMLIDRRG--PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG  648 (902)
T ss_dssp             C------BTS-E------EEEEETTSEEEEEETTT--TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred             c------CCc-E------EEEEeCCCcEEEEECCC--CeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence            9      799 9      99999999999999987  5554433333443 788999999999     885   899999


Q ss_pred             eeCCeEEEEEc---ccCcccCcccccccccc-----cccEEEEE-ee----------------------cCCCEEEEEeC
Q 048511          194 GYGGAFHLWRN---VGVDIDNWQPQKVPSGH-----FAAVMDIS-WS----------------------RSSDYLLSVSH  242 (351)
Q Consensus       194 ~~dg~i~~~d~---~~~~~~~~~~~~~~~~~-----~~~v~~v~-~s----------------------p~~~~l~s~~~  242 (351)
                      +.|++|++||+   .++     +....+.+|     .+.|..++ |+                      +++.+|+++  
T Consensus       649 s~D~tv~~wd~~p~~~g-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--  721 (902)
T 2oaj_A          649 TDMGEVITYKILPASGG-----KFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--  721 (902)
T ss_dssp             ETTSEEEEEEEEECGGG-----CEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--
T ss_pred             ecCCcEEEEEEecCCCC-----cEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--
Confidence            99999999999   555     344555555     46777776 65                      444444443  


Q ss_pred             CCcEEEEcCCCccccccCccceEEeccccccccceeEE---E------EeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV---T------IIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                      +..|+||++.+++          ...+...|...+..+   .      |++  ++..|++++.||.|++|+++ .+.+.+
T Consensus       722 ~~~ir~~~~~~~k----------~~~k~~~~~~~~~~v~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~s~p~l~~~~~  789 (902)
T 2oaj_A          722 FDDIRLITLGKSK----------STHKGFKYPLAATGLSYISTVEKNNDRK--NLTVIITLEINGHLRVFTIPDFKEQMS  789 (902)
T ss_dssp             SSEEEEECTTCCC----------EEEEECSSCEEEEEEEEEEEECSSSCEE--EEEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccceEEEeCcccc----------ceeeEcccceeeeEEEEEEecccccccc--CceEEEEEeCCCcEEEEECcchHHHhh
Confidence            7799999998876          333333444445555   5      667  78999999999999999987 666666


Q ss_pred             eee
Q 048511          313 LNH  315 (351)
Q Consensus       313 ~~~  315 (351)
                      +.-
T Consensus       790 ~~~  792 (902)
T 2oaj_A          790 EHI  792 (902)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-30  Score=244.51  Aligned_cols=216  Identities=18%  Similarity=0.280  Sum_probs=178.3

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      ..+.+|.+.|++++|+        +++++|++|+.||+|++||+.....                               
T Consensus         3 ~~l~gH~~~V~~l~~s--------~dg~~latg~~dg~I~vwd~~~~~~-------------------------------   43 (753)
T 3jro_A            3 VIANAHNELIHDAVLD--------YYGKRLATCSSDKTIKIFEVEGETH-------------------------------   43 (753)
T ss_dssp             -----CCCCEEEECCC--------SSSCCEEEEETTTEEEEEEEETTEE-------------------------------
T ss_pred             eecccCcceeEEEEEC--------CCCCeEEEEECCCcEEEEecCCCCC-------------------------------
Confidence            4678999999999999        8899999999999999999874321                               


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc--eEEEEEeccccccccceEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI--WMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~i~~  180 (351)
                        .....+.+|.++|++++|+|.    .++++      |++|+.||.|++||+..  +.  ....+     ..|...|.+
T Consensus        44 --~~~~~l~~h~~~V~~l~~s~~----~~~~~------l~s~s~Dg~I~vwd~~~--~~~~~~~~~-----~~h~~~V~~  104 (753)
T 3jro_A           44 --KLIDTLTGHEGPVWRVDWAHP----KFGTI------LASCSYDGKVLIWKEEN--GRWSQIAVH-----AVHSASVNS  104 (753)
T ss_dssp             --EEEEEECCCSSCEEEEEECCT----TSCSE------EEEEETTSCEEEEEEET--TEEEEEEEE-----CCCSSCEEE
T ss_pred             --ccceeccCCcCceEEEEecCC----CCCCE------EEEEeCCCeEEEEECCC--Ccccccccc-----cCCCCCeEE
Confidence              223456789999999999941    12788      99999999999999998  54  33333     378889999


Q ss_pred             EEEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec-------------CCCEEEEEeCCCc
Q 048511          181 GHWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-------------SSDYLLSVSHDQT  245 (351)
Q Consensus       181 i~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------------~~~~l~s~~~dg~  245 (351)
                      ++|+|+  ++.+++++.||.|++||+++...   .....+.+|...|.+++|+|             ++.+|++|+.||.
T Consensus       105 v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~  181 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  181 (753)
T ss_dssp             EEECCGGGCSEEEEEETTSEEEEEECCSSSC---CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred             EEECCCCCCCEEEEEeCCCcEEEEEeecCCC---cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence            999999  99999999999999999987632   33456678999999999999             5899999999999


Q ss_pred             EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCC---CcEEEEecCCCeEEEEecCc
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKG---NHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~dg~v~vw~~~~  307 (351)
                      |++||++.+.      ..+.....+.+|...|++++|+|  +   +.+|++|+.||.|++||+..
T Consensus       182 I~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~sp--~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          182 VKIWKYNSDA------QTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             EEEEEEETTT------TEEEEEEEECCCSSCEEEEEECC--CCSSSEEEEEEESSSCEEEEEESS
T ss_pred             EEEEeccCCc------ccceeeeeecCCCCcEEEEEecc--CCCCCCEEEEEecCCEEEEecCCC
Confidence            9999998765      23345666778999999999999  7   89999999999999999873

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.1e-28  Score=216.57  Aligned_cols=262  Identities=14%  Similarity=0.065  Sum_probs=201.9

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +++.|++|++||+.+ +  +.+..+..|. .+.+++|+        +++++| ++++.|++|++||+.+++........ 
T Consensus         7 s~~~d~~v~v~d~~~-~--~~~~~~~~~~-~~~~~~~s--------~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-   73 (391)
T 1l0q_A            7 ANSESDNISVIDVTS-N--KVTATIPVGS-NPMGAVIS--------PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-   73 (391)
T ss_dssp             EETTTTEEEEEETTT-T--EEEEEEECSS-SEEEEEEC--------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred             EcCCCCEEEEEECCC-C--eEEEEeecCC-CcceEEEC--------CCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-
Confidence            467899999999998 7  4555677665 58999999        788876 67779999999999988776555433 


Q ss_pred             ccceeeeEeeecCCeEEe-cCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecCCe
Q 048511           80 RKEVISLASYIEGPVLVA-GSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKT  149 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~  149 (351)
                       ..+.+++|+|+++.+++ +..++.+.++..        +. +...+.+++|+      ++++.      | ++++.|+.
T Consensus        74 -~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s------~dg~~------l~~~~~~~~~  139 (391)
T 1l0q_A           74 -SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALS------PDGKK------LYVTNNGDKT  139 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC------TTSSE------EEEEETTTTE
T ss_pred             -CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEEC------CCCCE------EEEEeCCCCE
Confidence             37889999999997755 445577766543        22 34568999999      67776      5 78888999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEeeCCeEEEEEcccCcccCcccccccccccccEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI  228 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v  228 (351)
                      |++||+++  ++....+.     . ...+.+++|+|+++++ ++++.++.|++||+++++     ....+. +...+.++
T Consensus       140 v~~~d~~~--~~~~~~~~-----~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~-~~~~~~~~  205 (391)
T 1l0q_A          140 VSVINTVT--KAVINTVS-----V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVK-VEAAPSGI  205 (391)
T ss_dssp             EEEEETTT--TEEEEEEE-----C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CSSEEEEE
T ss_pred             EEEEECCC--CcEEEEEe-----c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEe-cCCCccce
Confidence            99999998  66666554     2 2457899999999987 566788999999998863     344443 55678999


Q ss_pred             EeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEe
Q 048511          229 SWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFE  304 (351)
Q Consensus       229 ~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~  304 (351)
                      +|+|++++|++++   .++.|++||+.+++          .+..+..+. .+.+++|+|  ++++| ++++.|+.|++||
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~-~~~~~~~s~--dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNK----------ITARIPVGP-DPAGIAVTP--DGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTE----------EEEEEECCS-SEEEEEECT--TSSEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCe----------EEEEEecCC-CccEEEEcc--CCCEEEEEcCCCCEEEEEE
Confidence            9999999998887   68999999998776          333333343 478999999  78766 7778999999999


Q ss_pred             cC-chhhhceeec
Q 048511          305 AP-LSFLKTLNHA  316 (351)
Q Consensus       305 ~~-~~~~~~~~~~  316 (351)
                      +. ++.+..+..+
T Consensus       273 ~~~~~~~~~~~~~  285 (391)
T 1l0q_A          273 TATNTITATMAVG  285 (391)
T ss_dssp             TTTTEEEEEEECS
T ss_pred             CCCCcEEEEEECC
Confidence            87 6666666543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.6e-30  Score=221.43  Aligned_cols=188  Identities=12%  Similarity=0.120  Sum_probs=151.5

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.|++|+|||+.+ +  .++..+. |.+.|++|+|+        |++++|++++.| .+++|+..++.....       
T Consensus       153 ~~~d~~i~iwd~~~-~--~~~~~~~-~~~~V~~v~fs--------pdg~~l~s~s~~-~~~~~~~~~~~~~~~-------  212 (365)
T 4h5i_A          153 SKVPAIMRIIDPSD-L--TEKFEIE-TRGEVKDLHFS--------TDGKVVAYITGS-SLEVISTVTGSCIAR-------  212 (365)
T ss_dssp             SCSSCEEEEEETTT-T--EEEEEEE-CSSCCCEEEEC--------TTSSEEEEECSS-CEEEEETTTCCEEEE-------
T ss_pred             CCCCCEEEEeECCC-C--cEEEEeC-CCCceEEEEEc--------cCCceEEeccce-eEEEEEeccCcceee-------
Confidence            56899999999998 6  4455554 78899999999        889999999855 566777665543321       


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC----eEEEEeccC
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK----TMMIWQPEK  157 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~  157 (351)
                                                ....+|...|.+++|+      +++..      +++++.|+    .+++||+..
T Consensus       213 --------------------------~~~~~~~~~v~~v~fs------pdg~~------l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          213 --------------------------KTDFDKNWSLSKINFI------ADDTV------LIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             --------------------------ECCCCTTEEEEEEEEE------ETTEE------EEEEEESSSCCEEEEEEEEET
T ss_pred             --------------------------eecCCCCCCEEEEEEc------CCCCE------EEEEecCCcceeEEeeccccc
Confidence                                      2345688899999999      78888      99999887    688899876


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccEEEEEeecCCCE
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~  236 (351)
                      .......   ......|...|++++|+|++++|++|+.|++|+|||++++     +++.. +.+|...|++|+|+|||++
T Consensus       255 ~~~~~~~---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-----~~~~~~~~gH~~~V~~v~fSpdg~~  326 (365)
T 4h5i_A          255 GNTSVLR---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-----SMSKIFKQAHSFAITEVTISPDSTY  326 (365)
T ss_dssp             TEEEEEE---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEETTSSSSCEEEEEECTTSCE
T ss_pred             ceeccee---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-----cEEEEecCcccCCEEEEEECCCCCE
Confidence            3222221   2223478889999999999999999999999999999987     45655 5789999999999999999


Q ss_pred             EEEEeCCCcEEEEcCCCcc
Q 048511          237 LLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~  255 (351)
                      |++++.|++|+|||+....
T Consensus       327 laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          327 VASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EEEEETTSEEEEEECCTTT
T ss_pred             EEEEeCCCeEEEEEcCCCC
Confidence            9999999999999996543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.7e-29  Score=224.92  Aligned_cols=229  Identities=18%  Similarity=0.270  Sum_probs=189.9

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      ...+|...|+++.+.          +++|++|+.||+|++||+.+++...... .+...+.++.+  ++..+++++.++.
T Consensus       128 ~~~~~~~~v~~~~~d----------~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~  194 (435)
T 1p22_A          128 CRSETSKGVYCLQYD----------DQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDST  194 (435)
T ss_dssp             CCCSSCCCEEEEECC----------SSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSC
T ss_pred             cccCCCCcEEEEEEC----------CCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCe
Confidence            344667789988876          7899999999999999999877654443 45567778877  8899999999998


Q ss_pred             EEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          104 VSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       104 ~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +.++.        .+.+|...|.+++|++        ..      +++|+.|+.|++||++.  +.......  ....|.
T Consensus       195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------~~------l~s~s~dg~i~vwd~~~--~~~~~~~~--~~~~~~  256 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN--------GM------MVTCSKDRSIAVWDMAS--PTDITLRR--VLVGHR  256 (435)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCT--------TE------EEEEETTSCEEEEECSS--SSCCEEEE--EECCCS
T ss_pred             EEEEECCCCcEEEEEcCCCCcEEEEEEcC--------CE------EEEeeCCCcEEEEeCCC--CCCceeee--EecCCC
Confidence            87765        4667999999999982        25      99999999999999998  43332111  123788


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..|.+++|  +++++++++.||.|++||++++     .++..+.+|...|.+++|+  +.+|++|+.||.|++||++++.
T Consensus       257 ~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          257 AAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-----cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC
Confidence            89999999  7889999999999999999987     5678888999999999984  6799999999999999998876


Q ss_pred             ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                                .+..+.+|...|++++|    ++.+|++|+.||.|++||+.
T Consensus       328 ----------~~~~~~~h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          328 ----------CLRVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             ----------EEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEEHH
T ss_pred             ----------EEEEEeCCcCcEEEEEe----cCCEEEEEeCCCcEEEEECC
Confidence                      56666789999999998    46899999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-30  Score=226.32  Aligned_cols=244  Identities=8%  Similarity=-0.027  Sum_probs=182.2

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.|++|+  |... +     ..+.+|...|++|+|+        |+|       .++++.+|+.....   .....+.
T Consensus        32 Sas~D~TV~--d~~~-~-----~~l~gh~~~v~~V~Fs--------Pdg-------~~~~~~~~~~~~~~---~~~~~~~   85 (588)
T 2j04_A           32 TTFPDISIG--QPKY-A-----KDINCNSKNLFHVKEF--------PLE-------FENKLDFELAQQNG---LLNSQPV   85 (588)
T ss_dssp             ECSSSEEEE--EECC-C-----SCCSSBGGGTEEEEEE--------CCC-------CCCTTTTSCCCSSC---SSTTSCS
T ss_pred             EEcCCceee--cccc-c-----ceecCCCccEEEEEEC--------CCC-------CcceEEEEeCCCce---EeecCCC
Confidence            356666666  5443 2     2335677777777777        545       34444444433222   2221225


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE------ecccccc-----ceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES------LLIGHED-----WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~h~~-----~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      ..+.+++|+|+|..+++++.++.+.+|.      .+. |..     .|.+++|+      |||++      |++|+.||+
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafS------PDG~~------LAsgs~DGt  152 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWN------PIESS------IVVGNEDGE  152 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEEC------SSSSC------EEEEETTSE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEc------CCCCE------EEEEcCCCE
Confidence            6899999999999999999999998886      245 655     49999999      79999      999999999


Q ss_pred             EEEEeccCCCcc-------eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccc
Q 048511          150 MMIWQPEKTTGI-------WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGH  221 (351)
Q Consensus       150 i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~  221 (351)
                      |+|||+..  +.       .+.++... ..+|...|.+++|+|++  +++++.|++|++||+.++...  ....++ .+|
T Consensus       153 VkIWd~~~--~~l~~~~~i~l~ti~~~-~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--~~~~tL~~~h  225 (588)
T 2j04_A          153 LQFFSIRK--NSENTPEFYFESSIRLS-DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--PVSRMIQNAS  225 (588)
T ss_dssp             EEEEECCC--CTTTCCCCEEEEEEECS-CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--CCEEEEECCC
T ss_pred             EEEEECCC--Cccccccceeeeeeecc-cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--cceeeecccc
Confidence            99999998  43       23444322 23577899999999999  888999999999999886410  122345 478


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEE--eeeCCCcEEEEecCCCe
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI--IQGKGNHRFVSGADEKV  299 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~s~~~dg~  299 (351)
                      ...|.+++|+  +++|++++ ++.|++||+.++..         ..... +|...++.++|  +|  ++..|+++++||.
T Consensus       226 ~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~---------~~~~~-gh~~~V~~va~~~s~--d~~~La~a~edG~  290 (588)
T 2j04_A          226 RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI---------SSLKT-GSLENFHIIPLNHEK--ESTILLMSNKTSY  290 (588)
T ss_dssp             SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE---------EEEEC-SCCSCCCEEEETTCS--SCEEEEECSSCEE
T ss_pred             cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE---------EEEEc-CCCceEEEEEeeeCC--CCCEEEEEcCCCC
Confidence            8899999999  58899887 69999999988761         12222 68899999999  98  8999999999999


Q ss_pred             EEEEecC
Q 048511          300 ARVFEAP  306 (351)
Q Consensus       300 v~vw~~~  306 (351)
                       ++|..+
T Consensus       291 -klw~~d  296 (588)
T 2j04_A          291 -KVLLED  296 (588)
T ss_dssp             -EEEESS
T ss_pred             -EEEeec
Confidence             999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=4.8e-29  Score=216.00  Aligned_cols=273  Identities=9%  Similarity=0.013  Sum_probs=176.1

Q ss_pred             EEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEee
Q 048511           10 LYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASY   89 (351)
Q Consensus        10 vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~   89 (351)
                      ||++.. .  ..+..+.+|.+.|++++|+        +++++|++|+.|+ +++|++.+.........   ..+..+.+.
T Consensus         3 i~s~~~-~--~~~~~~~~h~~~V~~v~fs--------~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~   67 (355)
T 3vu4_A            3 LGSMIT-R--NPIVPENHVSNPVTDYEFN--------QDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRML   67 (355)
T ss_dssp             -------------------CCCCCEEEEC--------TTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEEC
T ss_pred             cccccc-c--CCccccccCCCceEEEEEC--------CCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEc
Confidence            455544 3  3455778999999999999        8899999998775 78999887654433221   245566777


Q ss_pred             ecCCeE-EecCCceeEEEEEecc-------ccccceEEEEecCCCCCC-----------CCC-cc-c----------CCC
Q 048511           90 IEGPVL-VAGSSSYQVSVESLLI-------GHEDWVYSVQWEPPSTAP-----------SDG-VS-C----------QQP  138 (351)
Q Consensus        90 ~~~~~l-~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~-----------~~~-~~-~----------~~~  138 (351)
                      +++..+ ++++.+..+++|....       .|...|.++.+++.....           .++ +. .          -.+
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~  147 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN  147 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc
Confidence            777766 4566667777765422       256678888887421000           000 00 0          000


Q ss_pred             ceeEE--eecCCeEEEEeccCCCcceEE----------EEE-eccccccccceEEEEEcCCCCEEEEEeeCCe-EEEEEc
Q 048511          139 SSILS--ASMDKTMMIWQPEKTTGIWMN----------VVT-VGELSHSALGFYGGHWSPDGRSILAHGYGGA-FHLWRN  204 (351)
Q Consensus       139 ~~l~s--~~~d~~i~iwd~~~~~~~~~~----------~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-i~~~d~  204 (351)
                      .+++.  |+.||.|++||++.  +....          ... ...+..|...|.+++|+|++++|++++.|++ |++||+
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~--~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQS--SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred             cEEEEeCCCcCcEEEEEECCC--CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            12343  57888899998886  22000          000 1123488999999999999999999999998 999999


Q ss_pred             ccCcccCcccccccc-c-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC-ccc----------e--EEecc
Q 048511          205 VGVDIDNWQPQKVPS-G-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG-ENS----------W--HEVAR  269 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~-~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~----------~--~~~~~  269 (351)
                      +++     +++..+. + |...|.+++|+|++++|++++.|++|++||++........ ...          |  .....
T Consensus       226 ~~~-----~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (355)
T 3vu4_A          226 EDG-----VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL  300 (355)
T ss_dssp             TTC-----CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred             CCC-----cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence            987     4567776 5 9999999999999999999999999999999765421100 000          0  00001


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..........++|++  ++.+|++++.||.+++|++.
T Consensus       301 ~~~~~~~~~~~a~~~--d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          301 SVDKHVRGCKIAWIS--ESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             CCCTTCCCCEEEESS--SSEEEEEETTTTEEEEEEEE
T ss_pred             ccCCCCCceEEEEeC--CCCEEEEEeCCCeEEEEEEE
Confidence            111222347789999  89999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-29  Score=222.46  Aligned_cols=237  Identities=12%  Similarity=0.117  Sum_probs=175.7

Q ss_pred             eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEE
Q 048511           26 KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        26 ~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      +.-...|.+|+|+        +||+++||++.|++|+  |....+.+    ..+...+.+++|+|+|.       +..+.
T Consensus        12 ~~~~~~v~sv~~S--------pDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg~-------~~~~~   70 (588)
T 2j04_A           12 KEFEDWKNNLTWA--------RDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPLEF-------ENKLD   70 (588)
T ss_dssp             CCCSSSSCCEEEC--------TTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECCCC-------CCTTT
T ss_pred             hHhhccEEEEEEC--------CCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCCCC-------cceEE
Confidence            3456799999999        8999999999999999  75554433    35778999999999992       11111


Q ss_pred             EE-----Eecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          106 VE-----SLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       106 ~~-----~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                      ++     ..+. .|...|.+++|+      |+|..      ||+++.||.|++||.+.    .+..+. .........+.
T Consensus        71 ~~~~~~~~~~~~~~~~~V~~vawS------PdG~~------LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~  133 (588)
T 2j04_A           71 FELAQQNGLLNSQPVCYPRVCKPS------PIDDW------MAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYH  133 (588)
T ss_dssp             TSCCCSSCSSTTSCSCCEEEEEEC------SSSSC------EEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEE
T ss_pred             EEeCCCceEeecCCCCcEEEEEEC------CCCCE------EEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEE
Confidence            11     1122 567889999999      79999      99999999999999543    222222 11111123599


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccC--ccccccc----ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN--WQPQKVP----SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~----~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +++|+|+|++|++|+.||+|++||+.++....  +..+.++    .+|...|.+++|+|+|  +++++.|++|++||+..
T Consensus       134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~  211 (588)
T 2j04_A          134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA  211 (588)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence            99999999999999999999999998863210  0123454    6788899999999999  78888999999999977


Q ss_pred             ccccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          254 NVASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                      +...       .....+ .+|...|.+++|+    ++.||+++ ++.|++||+.+..+..+.
T Consensus       212 ~~~~-------~~~~tL~~~h~~~V~svaFs----g~~LASa~-~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          212 SSHQ-------PVSRMIQNASRRKITDLKIV----DYKVVLTC-PGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             SSSC-------CCEEEEECCCSSCCCCEEEE----TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred             Cccc-------cceeeecccccCcEEEEEEE----CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence            6520       011122 2677789999997    47888887 699999999866554444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=7.5e-29  Score=218.54  Aligned_cols=246  Identities=15%  Similarity=0.141  Sum_probs=192.1

Q ss_pred             ceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCccc---ceeecccccceeeeEeee-cCCeEEecCCceeEE
Q 048511           31 WIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSS---ANTQSTYRKEVISLASYI-EGPVLVAGSSSYQVS  105 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~  105 (351)
                      ....++++        ++.. ++++++.||.|+||++......   ......+...+.+++|+| ++.++++++.++.+.
T Consensus        36 ~~~~~~~~--------~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~  107 (402)
T 2aq5_A           36 DSGFCAVN--------PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM  107 (402)
T ss_dssp             SSCSEEEC--------SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred             CCCcEEEC--------CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence            34457777        4443 4456789999999999765332   222345677899999999 999999999999888


Q ss_pred             EEEe---------------ccccccceEEEEecCCCCCCCCC-cccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          106 VESL---------------LIGHEDWVYSVQWEPPSTAPSDG-VSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       106 ~~~~---------------~~~h~~~v~~l~~~p~~~~~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      +|..               +.+|...|.+++|+      +++ ++      |++++.|+.|++||+++  +..+..+.  
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------p~~~~~------l~s~~~dg~i~iwd~~~--~~~~~~~~--  171 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH------PTAQNV------LLSAGCDNVILVWDVGT--GAAVLTLG--  171 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC------SSBTTE------EEEEETTSCEEEEETTT--TEEEEEEC--
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEEC------cCCCCE------EEEEcCCCEEEEEECCC--CCccEEEe--
Confidence            7763               44689999999999      666 57      99999999999999998  66665551  


Q ss_pred             cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-cccccc-EEEEEeecCCCEEEEE---eCCC
Q 048511          170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAA-VMDISWSRSSDYLLSV---SHDQ  244 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~-v~~v~~sp~~~~l~s~---~~dg  244 (351)
                       ...|...|.+++|+|++++|++++.|+.|++||++++     ..+..+ ..|.+. +..++|+|++++|++|   +.|+
T Consensus       172 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          172 -PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             -TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             -cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence             1268889999999999999999999999999999886     446666 677765 8999999999999999   7899


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-EecCCCeEEEEecC-chh-hhceeec
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-SGADEKVARVFEAP-LSF-LKTLNHA  316 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~~-~~~-~~~~~~~  316 (351)
                      .|++||+++....      . .... ..|...+.+++|+|  ++.+|+ +|+.|+.|++|++. ++. +..+..+
T Consensus       246 ~i~iwd~~~~~~~------~-~~~~-~~~~~~v~~~~~s~--~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          246 QVALWDTKHLEEP------L-SLQE-LDTSSGVLLPFFDP--DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             EEEEEETTBCSSC------S-EEEE-CCCCSSCEEEEEET--TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             eEEEEcCccccCC------c-eEEe-ccCCCceeEEEEcC--CCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence            9999999886521      1 1111 14556799999999  888875 66689999999987 332 5555554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-28  Score=218.20  Aligned_cols=237  Identities=11%  Similarity=-0.040  Sum_probs=184.9

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc---ccceeecc----------------------------
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG---SSANTQST----------------------------   78 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---~~~~~~~~----------------------------   78 (351)
                      .++++++|+        ++|++|+++ .++.|++||+.+++   .+......                            
T Consensus         5 ~p~~~v~~s--------~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (450)
T 2vdu_B            5 HPLQNLLTS--------RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK   75 (450)
T ss_dssp             CCCCEEEEC--------SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred             ccEEEEEec--------CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence            578999999        888866665 57899999998887   33222110                            


Q ss_pred             -------------------------cccceeeeEeeecCCeE-EecCCceeEEEEEec----------c--ccccceEEE
Q 048511           79 -------------------------YRKEVISLASYIEGPVL-VAGSSSYQVSVESLL----------I--GHEDWVYSV  120 (351)
Q Consensus        79 -------------------------~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~----------~--~h~~~v~~l  120 (351)
                                               +...+.+++|+|+++.| ++++.++.+.+|...          .  .|...|.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred             cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence                                     11257899999999996 788888888877654          1  456789999


Q ss_pred             EecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC---CCEEEEEeeCC
Q 048511          121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD---GRSILAHGYGG  197 (351)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg  197 (351)
                      +|+      +++++      |++++.|+.|++|++..  +..... ....+..|...|.+++|+|+   +++|++++.|+
T Consensus       156 ~~s------p~~~~------l~~~~~~g~v~~~~~~~--~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~  220 (450)
T 2vdu_B          156 SIA------EDDTT------VIIADKFGDVYSIDINS--IPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE  220 (450)
T ss_dssp             EEC------TTSSE------EEEEETTSEEEEEETTS--CCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred             EEc------CCCCE------EEEEeCCCcEEEEecCC--cccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence            999      78888      99999999999999987  332210 00112367889999999999   99999999999


Q ss_pred             eEEEEEcccCcccCcccccc-cccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------
Q 048511          198 AFHLWRNVGVDIDNWQPQKV-PSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------  270 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------  270 (351)
                      .|++||++++     .++.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++...       .+...      
T Consensus       221 ~i~vwd~~~~-----~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~-------~~~~~~~~~~~  287 (450)
T 2vdu_B          221 HIKISHYPQC-----FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS-------TFDYNSLIKPY  287 (450)
T ss_dssp             CEEEEEESCT-----TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE-------EEECHHHHGGG
T ss_pred             cEEEEECCCC-----ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee-------eecchhhhhhh
Confidence            9999999876     33444 56899999999999 99999999999999999998876211       11100      


Q ss_pred             ----------------cccccceeEEEEeeeCCCcEEEEec-CCCeEEEEec
Q 048511          271 ----------------QVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEA  305 (351)
Q Consensus       271 ----------------~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~  305 (351)
                                      ......|.+++|+|  ++.+|++++ .|+.|++|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          288 LNDQHLAPPRFQNENNDIIEFAVSKIIKSK--NLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCTTSBC----------CBCCCEEEEEECS--SSSEEEEEETTCSEEEEEEE
T ss_pred             hhhcccccccccccccccceEEEEEEEEeC--CCCEEEEEECCCCeEEEEEe
Confidence                            02234589999999  899999888 8999999999

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.3e-28  Score=216.29  Aligned_cols=229  Identities=17%  Similarity=0.276  Sum_probs=182.9

Q ss_pred             CCCCCceEEEEEccCC-------CceEEEEeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCccc
Q 048511            1 MGGLDNKIHLYRGQRT-------GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSS   72 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~-------~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~   72 (351)
                      +|+.||.|++|++...       +....+..+.+|...|++|+|+        +++. +|++++.||+|++|++......
T Consensus       146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--------~~~~~~l~s~~~dg~i~vwd~~~~~~~  217 (430)
T 2xyi_A          146 TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN--------PNLNGYLLSASDDHTICLWDINATPKE  217 (430)
T ss_dssp             EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC--------TTSTTEEEEECTTSCEEEEETTSCCBG
T ss_pred             EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC--------CCCCCeEEEEeCCCeEEEEeCCCCCCC
Confidence            4688999999999751       2245677888999999999999        6676 9999999999999999874321


Q ss_pred             ------ceeecccccceeeeEeee-cCCeEEecCCceeEEEEEe-----------ccccccceEEEEecCCCCCCCCCc-
Q 048511           73 ------ANTQSTYRKEVISLASYI-EGPVLVAGSSSYQVSVESL-----------LIGHEDWVYSVQWEPPSTAPSDGV-  133 (351)
Q Consensus        73 ------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~-----------~~~h~~~v~~l~~~p~~~~~~~~~-  133 (351)
                            ......+...+.+++|+| ++.++++++.++.+.++..           +..|...|++++|+      +++. 
T Consensus       218 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~------p~~~~  291 (430)
T 2xyi_A          218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN------PYSEF  291 (430)
T ss_dssp             GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC------SSCTT
T ss_pred             CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC------CCCCC
Confidence                  122334566788999999 6778888888888877653           34688899999999      5554 


Q ss_pred             ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccC-
Q 048511          134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDN-  211 (351)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-  211 (351)
                      +      |++|+.||.|++||++.. ...+..+.     .|...|.+++|+|+++ +|++++.|+.|++||+....... 
T Consensus       292 ~------l~tg~~dg~v~vwd~~~~-~~~~~~~~-----~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          292 I------LATGSADKTVALWDLRNL-KLKLHSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             E------EEEEETTSEEEEEETTCT-TSCSEEEE-----CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             E------EEEEeCCCeEEEEeCCCC-CCCeEEee-----cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            6      889999999999999873 23344444     6888999999999985 68999999999999998732110 


Q ss_pred             --------cccccccccccccEEEEEeecCCC-EEEEEeCCCcEEEEcCCCcc
Q 048511          212 --------WQPQKVPSGHFAAVMDISWSRSSD-YLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       212 --------~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~~dg~i~vwd~~~~~  255 (351)
                              ..++..+.+|...|++++|+|+++ +|++++.||.|+||++....
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                    144566778999999999999999 89999999999999986543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.8e-28  Score=207.18  Aligned_cols=224  Identities=7%  Similarity=-0.047  Sum_probs=163.8

Q ss_pred             CCCCCceEEEEEccCC--------CceEEEEee-eecCCceeEEEeeCCcccCCCC--CccEEEEeeCCCcEEEEecCCC
Q 048511            1 MGGLDNKIHLYRGQRT--------GKFVRACEL-KGHTDWIRSLDFSLPVCTSGEA--ISILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~--------~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~   69 (351)
                      +|+.|++|++|+....        ++  .+..+ .+|.+.|.+++|+        +  ++++|++++.||+|++||+.++
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~--------~~~~~~~l~s~s~dg~i~~wd~~~~  159 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNK--VLREIEVDSANEIIYMYGH--------NEVNTEYFIWADNRGTIGFQSYEDD  159 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCC--EEEEEECCCSSCEEEEECC--------C---CCEEEEEETTCCEEEEESSSS
T ss_pred             EecCCCeEEEEEccCceEEeecCCcc--eeEEeecCCCCCEEEEEcC--------CCCCCCEEEEEeCCCcEEEEECCCC
Confidence            4789999999977630        21  12233 3677899999999        7  8999999999999999999877


Q ss_pred             cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           70 GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      +.....                                  ...|...|.+++|+      +++.+      |++|+.|+.
T Consensus       160 ~~~~~~----------------------------------~~~~~~~i~~~~~~------pdg~~------lasg~~dg~  193 (343)
T 3lrv_A          160 SQYIVH----------------------------------SAKSDVEYSSGVLH------KDSLL------LALYSPDGI  193 (343)
T ss_dssp             CEEEEE----------------------------------CCCSSCCCCEEEEC------TTSCE------EEEECTTSC
T ss_pred             cEEEEE----------------------------------ecCCCCceEEEEEC------CCCCE------EEEEcCCCE
Confidence            542211                                  12355679999999      78899      999999999


Q ss_pred             EEEEeccCCCcceE-EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---cccccE
Q 048511          150 MMIWQPEKTTGIWM-NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---GHFAAV  225 (351)
Q Consensus       150 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---~~~~~v  225 (351)
                      |++||+++  +... ..+.    ..|...|.+++|+|++.+|++++ ++.|++||+++.+     ....+.   .|...+
T Consensus       194 i~iwd~~~--~~~~~~~~~----~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~-----~~~~~~~~~~~~~~~  261 (343)
T 3lrv_A          194 LDVYNLSS--PDQASSRFP----VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV-----GTLAYPTYTIPEFKT  261 (343)
T ss_dssp             EEEEESSC--TTSCCEECC----CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST-----TCBSSCCCBC-----
T ss_pred             EEEEECCC--CCCCccEEe----ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC-----cceeecccccccccc
Confidence            99999998  5544 3443    13888999999999999999999 5599999998863     233333   244444


Q ss_pred             E--EEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee-eCCCcEEEEecCCCeEE
Q 048511          226 M--DISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ-GKGNHRFVSGADEKVAR  301 (351)
Q Consensus       226 ~--~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~dg~v~  301 (351)
                      .  +++|+|++++|++++. |+.|+||++....      ..|..        .++..++|.+ ..+...+++++.|+.++
T Consensus       262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT------KNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIA  327 (343)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT------CSEEE--------EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred             cceEEEECCCCCEEEEecCCCCcEEEEEEcccc------cceEe--------cCceeEecCccccccceeEEEecCCceE
Confidence            4  6999999999999988 9999999997654      23443        3355666654 11456777788888887


Q ss_pred             EEecC
Q 048511          302 VFEAP  306 (351)
Q Consensus       302 vw~~~  306 (351)
                      ++-..
T Consensus       328 ~~~~~  332 (343)
T 3lrv_A          328 AILKT  332 (343)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            77544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=202.60  Aligned_cols=219  Identities=20%  Similarity=0.296  Sum_probs=181.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|++|++++ +  +.+..+.+|...+.++.+.          +..|++++.++.+++|+.............+.
T Consensus        84 sgs~Dg~v~iw~~~~-~--~~~~~~~~h~~~~~~~~~~----------~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQ-Q--KRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  150 (318)
T ss_dssp             EEETTSEEEEEETTT-T--EEEEEEECCSSCEEEEEEE----------TTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEECCCcEEEeecCC-c--eeEEEecCccceEEEeecC----------CCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence            578999999999998 7  5677889999998887766          67999999999999999988776666666667


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK  148 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~  148 (351)
                      ..+..+.+.+++..++++..++.++++..            ...|...|.++.++|.     ...+    ..+++++.++
T Consensus       151 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~----~~~~~~~~~~  221 (318)
T 4ggc_A          151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW-----QSNV----LATGGGTSDR  221 (318)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT-----STTE----EEEEECTTTC
T ss_pred             CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC-----CCcE----EEEEecCCCC
Confidence            78899999999999999999999988754            3346678999999952     2222    0145677899


Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe--eCCeEEEEEcccCcccCcccccccccccccEE
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG--YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~  226 (351)
                      .|++||.+.  .......      .+...+..+.|+|++..+++++  .|+.|++||++++     +++..+.+|.+.|+
T Consensus       222 ~i~lwd~~~--~~~~~~~------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-----~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          222 HIRIWNVCS--GACLSAV------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-----AKVAELKGHTSRVL  288 (318)
T ss_dssp             EEEEEETTT--CCEEEEE------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-----CEEEEECCCSSCEE
T ss_pred             EEEEEeccc--ccccccc------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-----cEEEEEcCCCCCEE
Confidence            999999987  5444433      3556799999999999887765  7899999999987     56889999999999


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      +++|+|++++|++|+.|++|+|||+...
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999999999999999999998654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-27  Score=211.74  Aligned_cols=256  Identities=14%  Similarity=0.060  Sum_probs=197.8

Q ss_pred             CCCCceEEEEEccCCCceEEEE---eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRAC---ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      ++.|++|++||+.+ ++.....   .+.+|.+.|.+++|+        +++.++++++.|+.|++||+.+++...... .
T Consensus       140 ~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~  209 (433)
T 3bws_A          140 LLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIP--------EHNELWVSQMQANAVHVFDLKTLAYKATVD-L  209 (433)
T ss_dssp             BTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEG--------GGTEEEEEEGGGTEEEEEETTTCCEEEEEE-C
T ss_pred             eCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEc--------CCCEEEEEECCCCEEEEEECCCceEEEEEc-C
Confidence            56788999999998 6543222   355899999999999        889999999999999999998876655443 3


Q ss_pred             cccceeeeEeeecCCeEE-ecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEee----
Q 048511           79 YRKEVISLASYIEGPVLV-AGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS----  145 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~----  145 (351)
                      +...+..+++++++..++ ++..++.+.++..        +. +...+.+++|+      ++++.      +++++    
T Consensus       210 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~------~~g~~------l~~~~~~~~  276 (433)
T 3bws_A          210 TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-KIGLPRGLLLS------KDGKE------LYIAQFSAS  276 (433)
T ss_dssp             SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-CCSEEEEEEEC------TTSSE------EEEEEEESC
T ss_pred             CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-CCCCceEEEEc------CCCCE------EEEEECCCC
Confidence            455788999999999875 4546777766553        22 23458999999      78888      88887    


Q ss_pred             ----cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          146 ----MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       146 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                          .|+.|++||+++  +.....+.      +...+.+++|+|+++.+ ++++.++.|++||+.+++     .+..+. 
T Consensus       277 ~~~~~dg~i~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~-----~~~~~~-  342 (433)
T 3bws_A          277 NQESGGGRLGIYSMDK--EKLIDTIG------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK-----VQKSIP-  342 (433)
T ss_dssp             TTCSCCEEEEEEETTT--TEEEEEEE------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE-----EEEEEE-
T ss_pred             ccccCCCeEEEEECCC--CcEEeecc------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc-----EEEEec-
Confidence                488999999998  65554442      34478899999999755 556889999999998763     344443 


Q ss_pred             ccccEEEEEeecCCCEEEEEeC---------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          221 HFAAVMDISWSRSSDYLLSVSH---------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      +...+.+++|+|++++|++++.               ||.|++||+.+++          .+..+.. ...+.+++|+| 
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~----------~~~~~~~-~~~~~~~~~s~-  410 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT----------VKEFWEA-GNQPTGLDVSP-  410 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE----------EEEEEEC-SSSEEEEEECT-
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc----------EEEEecC-CCCCceEEEcC-
Confidence            6678999999999998888776               5799999998776          3333323 34689999999 


Q ss_pred             CCCcEEEEec-CCCeEEEEecCc
Q 048511          286 KGNHRFVSGA-DEKVARVFEAPL  307 (351)
Q Consensus       286 ~~~~~l~s~~-~dg~v~vw~~~~  307 (351)
                       ++.+|++++ .|+.|++|++++
T Consensus       411 -dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          411 -DNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -TSCEEEEEETTTTEEEEEEETT
T ss_pred             -CCCEEEEEECCCCeEEEEEecC
Confidence             888888776 599999999763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=9.8e-28  Score=208.26  Aligned_cols=230  Identities=11%  Similarity=0.074  Sum_probs=174.0

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||.|++||+.+ ........+.+|.+.|++++|+        +++++|++++.||.|++||+.++....  ...+.
T Consensus        59 ~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~--------~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~  127 (368)
T 3mmy_A           59 AGSWANDVRCWEVQD-SGQTIPKAQQMHTGPVLDVCWS--------DDGSKVFTASCDKTAKMWDLSSNQAIQ--IAQHD  127 (368)
T ss_dssp             EEETTSEEEEEEECT-TSCEEEEEEEECSSCEEEEEEC--------TTSSEEEEEETTSEEEEEETTTTEEEE--EEECS
T ss_pred             EECCCCcEEEEEcCC-CCceeEEEeccccCCEEEEEEC--------cCCCEEEEEcCCCcEEEEEcCCCCcee--ecccc
Confidence            478899999999987 3334557888999999999999        889999999999999999999877554  23356


Q ss_pred             cceeeeEe--eecCCeEEecCCceeEEEEEeccc--------cc------------------------------------
Q 048511           81 KEVISLAS--YIEGPVLVAGSSSYQVSVESLLIG--------HE------------------------------------  114 (351)
Q Consensus        81 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~--------h~------------------------------------  114 (351)
                      ..+.++.|  ++++..+++++.++.+.++....+        +.                                    
T Consensus       128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  207 (368)
T 3mmy_A          128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI  207 (368)
T ss_dssp             SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred             CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence            68889999  889999999998888877653211        11                                    


Q ss_pred             -----cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc-------ccccccceEEE
Q 048511          115 -----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE-------LSHSALGFYGG  181 (351)
Q Consensus       115 -----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~-------~~~~~~~i~~i  181 (351)
                           ..+.++.+.+...  .....      +++++.|+.|++||++.... .....+....       ...+...|.++
T Consensus       208 ~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (368)
T 3mmy_A          208 ESPLKHQHRCVAIFKDKQ--NKPTG------FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI  279 (368)
T ss_dssp             CCSCSSCEEEEEEEECTT--SCEEE------EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred             cccccCCCceEEEcccCC--CCCCe------EEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence                 1223333331110  11122      89999999999999987322 3334443110       01122279999


Q ss_pred             EEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          182 HWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       182 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      +|+|++++|++++.||.|++||++++     .++..+.+|...|.+++|+|++++|++++.|+..+.|++...
T Consensus       280 ~~sp~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          280 AFHPVHGTLATVGSDGRFSFWDKDAR-----TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTT-----EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             EEecCCCEEEEEccCCeEEEEECCCC-----cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence            99999999999999999999999986     567888899999999999999999999999987777665543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.5e-28  Score=212.24  Aligned_cols=267  Identities=11%  Similarity=0.029  Sum_probs=171.9

Q ss_pred             CCCceEEEEEccCCC-------ceEEEEeeeecCCceeEEEeeCCc---------------ccCCCCCccEEEEeeCCCc
Q 048511            3 GLDNKIHLYRGQRTG-------KFVRACELKGHTDWIRSLDFSLPV---------------CTSGEAISILLVSSSQDKV   60 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~-------~~~~~~~~~~h~~~V~~l~~~~~~---------------~~~~~~~~~~l~t~~~dg~   60 (351)
                      +.|+.|++|+.....       ....+. ...|...+..+.|.+..               .+   +++.+|++++.|++
T Consensus        37 g~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~las~~~d~~  112 (393)
T 4gq1_A           37 GHDTGITIYCASEEQTPGSTGLTLQELF-TIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSP---VYSLFLACVCQDNT  112 (393)
T ss_dssp             EESSEEEEEEEEECCSSSCCSEEEEEEE-EEECSSCEEEEEECTTCEEECC----------CC---EEEEEEEEEETTSC
T ss_pred             ECCCCEEEEECCCCCcccccccceeeeE-EEecCCCeeeEeecCCccccccccCCCcceeecC---CCCCEEEEEeCCCc
Confidence            457889999764311       112222 22345566666665321               01   45678999999999


Q ss_pred             EEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCC--CCCCCcccCCC
Q 048511           61 IRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPST--APSDGVSCQQP  138 (351)
Q Consensus        61 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~~~~~~~~~~  138 (351)
                      |++||+..+.....                              .....+.+|.+.|++++|+|...  ...++++    
T Consensus       113 v~lw~~~~~~~~~~------------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~----  158 (393)
T 4gq1_A          113 VRLIITKNETIITQ------------------------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQV----  158 (393)
T ss_dssp             EEEEEEETTEEEEE------------------------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEE----
T ss_pred             EEEEECCCCcccee------------------------------eeecccCCCCCceEEEEEccccccccCCCCCE----
Confidence            99999987654321                              12345789999999999995210  0037788    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcccCc-----
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDIDNW-----  212 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~-----  212 (351)
                        ||+++.|++|+|||++.  +.......     .|...+.+++|+|++. +|++++.|++|++||+++++....     
T Consensus       159 --las~s~D~tv~~Wd~~~--~~~~~~~~-----~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~  229 (393)
T 4gq1_A          159 --IASVGDDCTLIIWRLTD--EGPILAGY-----PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE  229 (393)
T ss_dssp             --EEEEETTSEEEEEEEET--TEEEEEEE-----ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------
T ss_pred             --EEEEECCCeEEEEECCC--Cceeeeec-----CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC
Confidence              99999999999999987  55554444     6778899999999875 799999999999999987642100     


Q ss_pred             ---------------ccccccccccccEEEEEee-cCCCEEEEEeCCCcEEEEcCCCccccccC----ccceE-----Ee
Q 048511          213 ---------------QPQKVPSGHFAAVMDISWS-RSSDYLLSVSHDQTTRVFAPWKNVASLMG----ENSWH-----EV  267 (351)
Q Consensus       213 ---------------~~~~~~~~~~~~v~~v~~s-p~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~-----~~  267 (351)
                                     .......+|...+.++.|+ |+++.|++++.|+++++||+.........    .....     ..
T Consensus       230 ~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          230 LVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             -CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred             CcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence                           0011224677889999987 79999999999999999999776521100    00000     00


Q ss_pred             ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      .....+.. .....|++..++.++++|+.||.|++||+. +..+..+..+.
T Consensus       310 ~~~~~~~~-~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~  359 (393)
T 4gq1_A          310 QGISLFPS-LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG  359 (393)
T ss_dssp             EEECSSCC-SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred             ccccccCc-ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            00111112 233445553456678899999999999987 65555555443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.7e-27  Score=198.76  Aligned_cols=197  Identities=15%  Similarity=0.067  Sum_probs=139.8

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCccc-CCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc--c
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCT-SGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--R   80 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--~   80 (351)
                      .|+.|++|++..+++  .+..+.+|...++.++|+    + +  .++.+|++++.|++|+|||+.+++.+..+....  .
T Consensus       155 ~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs----~~~--g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v  226 (356)
T 2w18_A          155 SDQQVEVMTFAEDGG--GKENQFLMPPEETILTFA----EVQ--GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ  226 (356)
T ss_dssp             TTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEE----EEE--TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred             CCCcEEEEEECCCCc--eeeeeccCCCceeeEEee----ccC--CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence            599999999966463  556778999999999999    2 1  267999999999999999999998776554221  1


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                      ..+.+++|+|+|.+++++..+             ..    .|.                 +++|+.|++|++||..+  +
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~-------------~~----~w~-----------------laSGs~D~tIklWd~~t--g  270 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHP-------------CA----KES-----------------ESLRSPVFQLIVINPKT--T  270 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC----------------------------------------------CCEEEEEEETTT--T
T ss_pred             eeeEEEEECCCCCEEEEeccC-------------CC----cce-----------------eeccCCCcEEEEEECCC--C
Confidence            233344566665554432211             00    012                 78899999999999998  7


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE-EEEeecCCCEEEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM-DISWSRSSDYLLS  239 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~s  239 (351)
                      ..+..+......+|...+.+..++  +..+++++.|++|+|||+.++     +++.++.+|...+. .++|+|+|++|++
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-----k~l~tL~gH~~~vvs~vafSPDG~~LaS  343 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-----QCTALLPPVSDQHWSFVKWSGTDSHLLA  343 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-----SEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred             EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-----cEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence            766554332223555555555544  788999999999999999998     56888888887655 5899999999999


Q ss_pred             EeCCCcEEEEcC
Q 048511          240 VSHDQTTRVFAP  251 (351)
Q Consensus       240 ~~~dg~i~vwd~  251 (351)
                      |+.|++|+|||+
T Consensus       344 GS~D~TIklWd~  355 (356)
T 2w18_A          344 GQKDGNIFVYHY  355 (356)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             EECCCcEEEecC
Confidence            999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2.3e-25  Score=197.98  Aligned_cols=264  Identities=9%  Similarity=-0.003  Sum_probs=197.5

Q ss_pred             CCCc--eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee----
Q 048511            3 GLDN--KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ----   76 (351)
Q Consensus         3 ~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~----   76 (351)
                      +.++  .|.+||... +.+..+..+..+ ..+.+++|+        +++.++++++.|+.|++||+.+++......    
T Consensus        96 ~~~~~~~l~~~d~~~-~~~~~~~~~~~~-~~~~~~~~s--------~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~  165 (433)
T 3bws_A           96 PEELNEKLIALDKEG-ITHRFISRFKTG-FQPKSVRFI--------DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY  165 (433)
T ss_dssp             GGGGTTCEEECCBTT-CSEEEEEEEECS-SCBCCCEES--------SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH
T ss_pred             cCCCceEEEEECCCC-CcceEEEEEcCC-CCceEEEEe--------CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccc
Confidence            4455  444445544 445666666655 456699999        778888899999999999999877654222    


Q ss_pred             cccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecC
Q 048511           77 STYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMD  147 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d  147 (351)
                      ..+...+.++++++++.+++++..++.+.++.        .+..|...+.+++|+      ++++.      + ++++.|
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~~~~~~~  233 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD------PIRDL------VYCSNWIS  233 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE------TTTTE------EEEEETTT
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc------CCCCE------EEEEecCC
Confidence            23345778899999999999998888887664        345678899999999      67776      6 555589


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee--------CCeEEEEEcccCcccCcccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY--------GGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--------dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      +.|++||+++  +..+..+.      ....+.+++|+|+++.+++++.        |+.|++||+.+++     .+.. .
T Consensus       234 ~~i~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~-~  299 (433)
T 3bws_A          234 EDISVIDRKT--KLEIRKTD------KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDT-I  299 (433)
T ss_dssp             TEEEEEETTT--TEEEEECC------CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEE-E
T ss_pred             CcEEEEECCC--CcEEEEec------CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEee-c
Confidence            9999999988  66555443      2345899999999999998884        8899999998763     2333 3


Q ss_pred             cccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC--
Q 048511          220 GHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD--  296 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--  296 (351)
                      .|...+..++|+|+++.+ ++++.|+.|++||+.+++          .+..+ .+...+.+++|+|  ++.+|++++.  
T Consensus       300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----------~~~~~-~~~~~~~~~~~s~--dg~~l~~~~~~~  366 (433)
T 3bws_A          300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----------VQKSI-PVFDKPNTIALSP--DGKYLYVSCRGP  366 (433)
T ss_dssp             EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----------EEEEE-ECSSSEEEEEECT--TSSEEEEEECCC
T ss_pred             cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----------EEEEe-cCCCCCCeEEEcC--CCCEEEEEecCC
Confidence            466688999999999755 666889999999998765          22222 2556689999999  8888877765  


Q ss_pred             -------------CCeEEEEecC-chhhhceee
Q 048511          297 -------------EKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       297 -------------dg~v~vw~~~-~~~~~~~~~  315 (351)
                                   ||.|++||+. ++.+..+..
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEecC
Confidence                         5799999986 666665544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.4e-25  Score=196.62  Aligned_cols=266  Identities=11%  Similarity=0.057  Sum_probs=193.0

Q ss_pred             eEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCC--------cccCCCCCccEEEEeeCC------CcEEEEecCCCc
Q 048511            7 KIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLP--------VCTSGEAISILLVSSSQD------KVIRIWKLALRG   70 (351)
Q Consensus         7 ~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~--------~~~~~~~~~~~l~t~~~d------g~i~iwd~~~~~   70 (351)
                      +|++||+  .+ ++......+.+|...+..+++.+.        ..+.  ..+..++.++.+      +.|++||+....
T Consensus        94 ~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~--~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~  170 (415)
T 2hqs_A           94 AYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG--AFRTRIAYVVQTNGGQFPYELRVSDYDGYN  170 (415)
T ss_dssp             EEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC--CTTCEEEEEEECSSSSCCEEEEEEETTSCS
T ss_pred             EEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC--cCCCEEEEEEecCCCCccceEEEEcCCCCC
Confidence            9999999  87 654444678999998888877610        0000  125566666654      799999997543


Q ss_pred             ccceeecccccceeeeEeeecCCeEEecCCce---eEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCce
Q 048511           71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSY---QVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~  140 (351)
                       ...+ ..+...+.+++|+|+|+.++.+..+.   .+.++.       .+..|...+.+++|+      ||++.      
T Consensus       171 -~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~s------pdg~~------  236 (415)
T 2hqs_A          171 -QFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS------PDGSK------  236 (415)
T ss_dssp             -CEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC------TTSSE------
T ss_pred             -CEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEc------CCCCE------
Confidence             2222 23456788999999999998876543   555543       345677889999999      78887      


Q ss_pred             eE-EeecCCe--EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-C--eEEEEEcccCcccCccc
Q 048511          141 IL-SASMDKT--MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-G--AFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       141 l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~  214 (351)
                      |+ +++.++.  |++||+++  +.. ..+     ..+...+.+++|+|++++|++++.+ +  .|++||+.+++      
T Consensus       237 la~~~~~~g~~~i~~~d~~~--~~~-~~l-----~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------  302 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLAS--GQI-RQV-----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------  302 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTT--CCE-EEC-----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------
T ss_pred             EEEEEecCCCceEEEEECCC--CCE-EeC-----cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------
Confidence            76 6666654  99999987  443 222     2566789999999999999888764 4  68888887763      


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCC---CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHD---QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                      ...+..+...+..++|+|+|++|++++.+   ..|++||+.+++          . ..+..+. .+.+++|+|  ++++|
T Consensus       303 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~-~~l~~~~-~~~~~~~sp--dg~~l  368 (415)
T 2hqs_A          303 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------V-QVLSSTF-LDETPSLAP--NGTMV  368 (415)
T ss_dssp             CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------E-EECCCSS-SCEEEEECT--TSSEE
T ss_pred             EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------E-EEecCCC-CcCCeEEcC--CCCEE
Confidence            33444566788999999999999888764   589999998775          1 1222333 789999999  99999


Q ss_pred             EEecCCC---eEEEEecCchhhhceeecc
Q 048511          292 VSGADEK---VARVFEAPLSFLKTLNHAT  317 (351)
Q Consensus       292 ~s~~~dg---~v~vw~~~~~~~~~~~~~~  317 (351)
                      ++++.|+   .|++||+.+...+.+..+.
T Consensus       369 ~~~s~~~~~~~l~~~d~~g~~~~~l~~~~  397 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTDGRFKARLPATD  397 (415)
T ss_dssp             EEEEEETTEEEEEEEETTSCCEEECCCSS
T ss_pred             EEEEcCCCccEEEEEECCCCcEEEeeCCC
Confidence            9888776   8999999877777665554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=1.4e-24  Score=187.92  Aligned_cols=217  Identities=15%  Similarity=0.176  Sum_probs=159.5

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~   79 (351)
                      +|+.|++|++||..+ +  ..+..+. |...|.+++|+        ++  .++.+ .|+.|++||+.+. +.+.....  
T Consensus        76 ~~~~d~~v~iWd~~~-~--~~~~~~~-~~~~v~~v~~~--------~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--  138 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVK-K--QDVSRIK-VDAPVKDLFLS--------RE--FIVVS-YGDVISVFKFGNPWKRITDDIR--  138 (355)
T ss_dssp             ECSSTTEEEEEETTT-T--EEEEEEE-CSSCEEEEEEC--------SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE--
T ss_pred             EECCccEEEEEECCC-C--cEEEEEE-CCCceEEEEEc--------CC--EEEEE-EcCEEEEEECCCCceeeEEecc--
Confidence            367789999999998 7  3455665 67799999999        44  34444 3789999999987 55444432  


Q ss_pred             ccceeeeEeeecCCeEEe--cCCceeEEEE------------------------EeccccccceEEEEecCCCCCCCCCc
Q 048511           80 RKEVISLASYIEGPVLVA--GSSSYQVSVE------------------------SLLIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~------------------------~~~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                        ....+++++  ..+++  +..++.+.++                        ..+.+|...|.+++|+      ++++
T Consensus       139 --~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s------~~g~  208 (355)
T 3vu4_A          139 --FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN------RKSD  208 (355)
T ss_dssp             --EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC------TTSS
T ss_pred             --CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC------CCCC
Confidence              222334444  44444  5666666443                        4467899999999999      7899


Q ss_pred             ccCCCceeEEeecCCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc
Q 048511          134 SCQQPSSILSASMDKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       134 ~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  212 (351)
                      +      |++|+.|++ |++||+++  +..+..+..   ..|...|.+++|+|++++|++++.|++|++||++.......
T Consensus       209 ~------l~s~s~d~~~v~iwd~~~--~~~~~~~~~---g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~  277 (355)
T 3vu4_A          209 M------VATCSQDGTIIRVFKTED--GVLVREFRR---GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR  277 (355)
T ss_dssp             E------EEEEETTCSEEEEEETTT--CCEEEEEEC---TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS
T ss_pred             E------EEEEeCCCCEEEEEECCC--CcEEEEEEc---CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccc
Confidence            9      999999998 99999998  777766641   12788999999999999999999999999999976532111


Q ss_pred             ccccc-----------------c-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          213 QPQKV-----------------P-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       213 ~~~~~-----------------~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..+..                 + .........++|++++++|++++.||.+++|++....
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          278 HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             ccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            11100                 0 0112234668999999999999999999999986544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=2.3e-24  Score=181.12  Aligned_cols=251  Identities=15%  Similarity=0.102  Sum_probs=185.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-Ccccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-RGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~   80 (351)
                      ++.|++|++||+.+ ++.   ..+..|...|.+++|+        +++++|++++ ++.|.+||+.+ ++..........
T Consensus        18 ~~~~~~i~~~d~~~-~~~---~~~~~~~~~v~~~~~s--------pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~   84 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT-RKM---RVVWQTPELFEAPNWS--------PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT   84 (297)
T ss_dssp             CCCCEEEEEEETTT-TEE---EEEEEESSCCEEEEEC--------TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC
T ss_pred             CCcceeEEEEeCCC-Cce---eeeccCCcceEeeEEC--------CCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc
Confidence            56789999999998 643   3556689999999999        8899999987 78999999998 655443333333


Q ss_pred             cceeeeEeeecCCeEEecCC--c--eeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeE-EeecCC
Q 048511           81 KEVISLASYIEGPVLVAGSS--S--YQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-SASMDK  148 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~--~--~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-s~~~d~  148 (351)
                      ..+..+.|+|+++.++.+..  +  ..+..+.       .+. +...+..++|+      ++++.      |+ +++.++
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~s------pdg~~------l~~~~~~~~  151 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT-KNLPSYWHGWS------PDGKS------FTYCGIRDQ  151 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC-SSSSEEEEEEC------TTSSE------EEEEEEETT
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee-cCCCccceEEC------CCCCE------EEEEECCCC
Confidence            56778999999999888762  2  2332221       122 23348889999      68876      66 788999


Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      .++||++....+.. ..+     ..+...+.+++|+|++++|+.++ .++.+.+|++....    .....+..|...+..
T Consensus       152 ~~~l~~~~~~~~~~-~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          152 VFDIYSMDIDSGVE-TRL-----THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERITDSAYGDWF  221 (297)
T ss_dssp             EEEEEEEETTTCCE-EEC-----CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECCCCSEEEEE
T ss_pred             ceEEEEEECCCCcc-eEc-----ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEecCCcccCC
Confidence            99999976432332 222     24567799999999999888776 48899999986322    335566677788999


Q ss_pred             EEeecCCCEEEEEeCC-----------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          228 ISWSRSSDYLLSVSHD-----------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       228 v~~sp~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      ++|+|++++|++++.+           +.|++||+.+++.        ..+.....|...+.+++|+|  ++.+|++++.
T Consensus       222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~  291 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV--------ETLFDLFGGQGTMNSPNWSP--DGDEFAYVRY  291 (297)
T ss_dssp             EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC--------EEEEEEEESTTTSCSCCBCT--TSSEEEEEEE
T ss_pred             eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc--------eeeeccCCCCcccccceECC--CCCEEEEEEe
Confidence            9999999999888765           5699999987652        12333345667799999999  8998887775


Q ss_pred             CC
Q 048511          297 EK  298 (351)
Q Consensus       297 dg  298 (351)
                      |.
T Consensus       292 ~~  293 (297)
T 2ojh_A          292 FP  293 (297)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.3e-23  Score=184.13  Aligned_cols=213  Identities=11%  Similarity=0.076  Sum_probs=165.7

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ++.|++|++||+.+ ++  .+..+..|. .|.+++|+        +++++|+ +++.|+.|++||+.+++.......  .
T Consensus        50 ~~~d~~i~v~d~~~-~~--~~~~~~~~~-~v~~~~~s--------pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~  115 (391)
T 1l0q_A           50 NAHSNDVSIIDTAT-NN--VIATVPAGS-SPQGVAVS--------PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--G  115 (391)
T ss_dssp             EGGGTEEEEEETTT-TE--EEEEEECSS-SEEEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--S
T ss_pred             CCCCCeEEEEECCC-Ce--EEEEEECCC-CccceEEC--------CCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--C
Confidence            45799999999988 73  455665544 89999999        7888775 455679999999998876554443  3


Q ss_pred             cceeeeEeeecCCeE-EecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecCCeE
Q 048511           81 KEVISLASYIEGPVL-VAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~i  150 (351)
                      ..+..++++++++.+ +++..++.+.++..        +..+ ..+.+++|+      ++++.      + ++++.++.|
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~------~dg~~------l~~~~~~~~~v  182 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVT------PDGTK------VYVANFDSMSI  182 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEEC------TTSSE------EEEEETTTTEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEEC------CCCCE------EEEEeCCCCEE
Confidence            467899999999977 56776777766653        2333 457899999      67766      5 677889999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCcccCcccccccccccccEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      ++||+++  +.....+.      +...+.+++|+|+++++++++   .++.|++||+.++     +.+..+..+. .+.+
T Consensus       183 ~~~d~~~--~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~-~~~~  248 (391)
T 1l0q_A          183 SVIDTVT--NSVIDTVK------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-----KITARIPVGP-DPAG  248 (391)
T ss_dssp             EEEETTT--TEEEEEEE------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-----EEEEEEECCS-SEEE
T ss_pred             EEEECCC--CeEEEEEe------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-----eEEEEEecCC-CccE
Confidence            9999998  66655543      345789999999999999888   6899999999886     3455565554 5789


Q ss_pred             EEeecCCCEE-EEEeCCCcEEEEcCCCcc
Q 048511          228 ISWSRSSDYL-LSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       228 v~~sp~~~~l-~s~~~dg~i~vwd~~~~~  255 (351)
                      ++|+|++++| ++++.|+.|++||+.+++
T Consensus       249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          249 IAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            9999999887 677889999999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=3.5e-23  Score=177.86  Aligned_cols=271  Identities=11%  Similarity=0.115  Sum_probs=180.1

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC-CcEEEEecC--CCcccceeeccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-KVIRIWKLA--LRGSSANTQSTY   79 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-g~i~iwd~~--~~~~~~~~~~~~   79 (351)
                      +.|+.|++|++...++...+..+ .|...+.+++|+        +++++|++++.+ +.|.+|++.  ++..........
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s--------pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVS--------PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEEC--------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             CCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEEC--------CCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            57899999999643554444443 577889999999        889989888876 999999997  443322212222


Q ss_pred             ccceeeeEeeecCCeEEecC-CceeEEEEEec----------cccccceEEEEecCCCCCCCCCcccCCCceeEEee-cC
Q 048511           80 RKEVISLASYIEGPVLVAGS-SSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MD  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d  147 (351)
                      ...+..++++++++.++++. .++.+.++..-          ......+.+++|+      ++++.      +++++ .+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~~~~  150 (343)
T 1ri6_A           83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS------PDNRT------LWVPALKQ  150 (343)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC------TTSSE------EEEEEGGG
T ss_pred             CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEEC------CCCCE------EEEecCCC
Confidence            33678899999999776654 35555554431          1122357888999      78877      77776 89


Q ss_pred             CeEEEEeccCCCcceEEEE--EeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc--CcccCccccccccc--
Q 048511          148 KTMMIWQPEKTTGIWMNVV--TVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG--VDIDNWQPQKVPSG--  220 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~--~~~~~~~~~~~~~~--  220 (351)
                      +.|++||+... +......  ...  ......+..++|+|+++++++++ .++.|.+|++..  +..........+..  
T Consensus       151 ~~v~~~d~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          151 DRICLFTVSDD-GHLVAQDPAEVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             TEEEEEEECTT-SCEEEEEEEEEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CEEEEEEecCC-Cceeeecccccc--cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence            99999999861 2221111  111  12234678899999999776665 789999999954  22110111111111  


Q ss_pred             -ccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec-CC
Q 048511          221 -HFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA-DE  297 (351)
Q Consensus       221 -~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d  297 (351)
                       ....+..++|+|++++|+ ++..++.|.+||+.....      ..+.+.....+.. +.+++|+|  ++++|++++ .+
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~~  298 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS------VLSKEGFQPTETQ-PRGFNVDH--SGKYLIAAGQKS  298 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------CEEEEEEEECSSS-CCCEEECT--TSSEEEEECTTT
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC------ceEEeeeecCCCc-cceEEECC--CCCEEEEecCCC
Confidence             133577899999998877 455789999999973210      1223333333433 88999999  888777766 78


Q ss_pred             CeEEEEecC
Q 048511          298 KVARVFEAP  306 (351)
Q Consensus       298 g~v~vw~~~  306 (351)
                      +.|.+|+++
T Consensus       299 ~~v~v~~~d  307 (343)
T 1ri6_A          299 HHISVYEIV  307 (343)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEEEc
Confidence            999999654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=1.1e-22  Score=185.22  Aligned_cols=267  Identities=13%  Similarity=0.092  Sum_probs=192.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEec--CCCcccceeeccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKL--ALRGSSANTQSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~--~~~~~~~~~~~~~   79 (351)
                      ++.|++|.+||..+ ++  .+.++..+.. +.+++|+        +++++|++++.|++|++||+  .+.+....+.  .
T Consensus       155 ~~~d~~V~v~D~~t-~~--~~~~i~~g~~-~~~v~~s--------pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~  220 (543)
T 1nir_A          155 LRDAGQIALVDGDS-KK--IVKVIDTGYA-VHISRMS--------ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--I  220 (543)
T ss_dssp             EGGGTEEEEEETTT-CC--EEEEEECSTT-EEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--C
T ss_pred             EcCCCeEEEEECCC-ce--EEEEEecCcc-cceEEEC--------CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--c
Confidence            46789999999998 64  4566763333 8899999        89999999999999999999  6666554444  3


Q ss_pred             ccceeeeEeee----cCCeEEecCC-ceeEEEEE--------eccc----------ccc-ceEEEEecCCCCCCCCCccc
Q 048511           80 RKEVISLASYI----EGPVLVAGSS-SYQVSVES--------LLIG----------HED-WVYSVQWEPPSTAPSDGVSC  135 (351)
Q Consensus        80 ~~~~~~~~~~~----~~~~l~~~~~-~~~~~~~~--------~~~~----------h~~-~v~~l~~~p~~~~~~~~~~~  135 (351)
                      ......++++|    +|++++++.. +..+.++.        .+..          |.. .+..+.++|     ....+ 
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~-----~~~~~-  294 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-----EHPEF-  294 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-----SSSEE-
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC-----CCCEE-
Confidence            45678999999    9999988763 45555443        2222          222 688899994     23445 


Q ss_pred             CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccc
Q 048511          136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~  214 (351)
                           +++...++.|.+||+..  ...+....+    .+...+..++|+|+++++++++ .+++|.+||..+++     +
T Consensus       295 -----~vs~~~~g~i~vvd~~~--~~~l~~~~i----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-----l  358 (543)
T 1nir_A          295 -----IVNVKETGKVLLVNYKD--IDNLTVTSI----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-----L  358 (543)
T ss_dssp             -----EEEETTTTEEEEEECTT--SSSCEEEEE----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-----E
T ss_pred             -----EEEECCCCeEEEEEecC--CCcceeEEe----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-----E
Confidence                 78888899999999987  333321111    1344577899999999877665 57999999999873     3


Q ss_pred             cccccc----ccccEEEEEeecC-CCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCC
Q 048511          215 QKVPSG----HFAAVMDISWSRS-SDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGN  288 (351)
Q Consensus       215 ~~~~~~----~~~~v~~v~~sp~-~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (351)
                      +..+..    |.+....+ ++|+ +.+++++. .|++|.|||+.+....   ...|+.+..+..|+..+..++++|  ++
T Consensus       359 ~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v~~~p--dg  432 (543)
T 1nir_A          359 SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFIKTHP--KS  432 (543)
T ss_dssp             EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCT--TC
T ss_pred             EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEEEcCC--CC
Confidence            444442    54433333 4777 66677765 5899999999773210   123567778888888889999999  99


Q ss_pred             cEEEEec-------CCCeEEEEecC-chhh
Q 048511          289 HRFVSGA-------DEKVARVFEAP-LSFL  310 (351)
Q Consensus       289 ~~l~s~~-------~dg~v~vw~~~-~~~~  310 (351)
                      ++|++++       .++.|.|||+. ++..
T Consensus       433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          433 SHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            9999987       27799999987 5444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.9e-22  Score=178.15  Aligned_cols=227  Identities=12%  Similarity=0.001  Sum_probs=173.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC---cEEEEecCCCcccceeecccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK---VIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ++|++||++. +.   ...+.+|...|.+++|+        |++++|++++.|+   .|++||+.+++...  .......
T Consensus       159 ~~i~i~d~~g-~~---~~~l~~~~~~v~~~~~S--------pdg~~la~~s~~~~~~~i~~~d~~tg~~~~--l~~~~~~  224 (415)
T 2hqs_A          159 YELRVSDYDG-YN---QFVVHRSPQPLMSPAWS--------PDGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH  224 (415)
T ss_dssp             EEEEEEETTS-CS---CEEEEEESSCEEEEEEC--------TTSSEEEEEECTTSSCEEEEEETTTCCEEE--EECCSSC
T ss_pred             ceEEEEcCCC-CC---CEEEeCCCCcceeeEEc--------CCCCEEEEEEecCCCcEEEEEECCCCcEEE--eecCCCc
Confidence            7999999986 43   45677899999999999        8899999999885   99999999876542  2223456


Q ss_pred             eeeeEeeecCCeEE-ecCCce--eEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CC--e
Q 048511           83 VISLASYIEGPVLV-AGSSSY--QVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK--T  149 (351)
Q Consensus        83 ~~~~~~~~~~~~l~-~~~~~~--~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~--~  149 (351)
                      +.+++|+|+|+.|+ ++..++  .+.++       ..+..|...+.+++|+      |+++.      |++++. ++  .
T Consensus       225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s------pdg~~------l~~~s~~~g~~~  292 (415)
T 2hqs_A          225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF------PDSQN------LAFTSDQAGRPQ  292 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC------TTSSE------EEEEECTTSSCE
T ss_pred             ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEEC------CCCCE------EEEEECCCCCcE
Confidence            78999999999877 444333  34433       3456788889999999      78888      887776 45  6


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~  226 (351)
                      |.+||+..  +... .+.     .+...+.+++|+|+|++|++++.+   ..|++||+.+++      ...+..+. .+.
T Consensus       293 i~~~d~~~--~~~~-~l~-----~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~~l~~~~-~~~  357 (415)
T 2hqs_A          293 VYKVNING--GAPQ-RIT-----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQVLSSTF-LDE  357 (415)
T ss_dssp             EEEEETTS--SCCE-ECC-----CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EEECCCSS-SCE
T ss_pred             EEEEECCC--CCEE-EEe-----cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EEEecCCC-CcC
Confidence            77778876  4322 222     345578899999999999988875   589999998864      23344454 789


Q ss_pred             EEEeecCCCEEEEEeCCC---cEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          227 DISWSRSSDYLLSVSHDQ---TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +++|+|+|++|++++.++   .|++||+..+.           ...+..|...|.+++|+|
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-----------~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-----------KARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTSCC-----------EEECCCSSSEEEEEEECC
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-----------EEEeeCCCCCCcCCcccc
Confidence            999999999999888776   79999986443           344557888899999998

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1e-21  Score=168.23  Aligned_cols=272  Identities=8%  Similarity=0.064  Sum_probs=179.0

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcc-cceeeccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGS-SANTQSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~-~~~~~~~~   79 (351)
                      ++.++.|++||.++ ++.  ...+..+...+ +++|+        +++++|++++. ++.|.+||+.++.. ..... . 
T Consensus        16 ~~~~~~v~~~d~~~-~~~--~~~~~~~~~~~-~~~~s--------~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~-   81 (331)
T 3u4y_A           16 EQHLRRISFFSTDT-LEI--LNQITLGYDFV-DTAIT--------SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-E-   81 (331)
T ss_dssp             EGGGTEEEEEETTT-CCE--EEEEECCCCEE-EEEEC--------SSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-E-
T ss_pred             ecCCCeEEEEeCcc-cce--eeeEEccCCcc-eEEEc--------CCCCEEEEEeCCCCeEEEEECCCCceeEEecc-c-
Confidence            45689999999998 754  33444556666 99999        88887766655 89999999998776 33222 2 


Q ss_pred             ccceee-eEeeecCCeEEecCCce---eEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ec
Q 048511           80 RKEVIS-LASYIEGPVLVAGSSSY---QVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SM  146 (351)
Q Consensus        80 ~~~~~~-~~~~~~~~~l~~~~~~~---~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~  146 (351)
                      ...... ++++|+|+.+++.....   .+.++..        +. +.....+++|+      ++++.      ++++ ..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s------pdg~~------l~~~~~~  148 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAIS------PNGNG------LILIDRS  148 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEEC------TTSSC------EEEEEET
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEEC------CCCCE------EEEEecC
Confidence            234445 89999999888665552   5655542        22 23456899999      78875      5544 55


Q ss_pred             CCe-EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccccccc
Q 048511          147 DKT-MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       147 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      ++. |.+|++... +..... ..... ........++|+|+++++++++ .++.|.+||+.+++.  .+.+..+.. ...
T Consensus       149 ~~~~i~~~~~~~~-g~~~~~-~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~-~~~  222 (331)
T 3u4y_A          149 SANTVRRFKIDAD-GVLFDT-GQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGT-NNL  222 (331)
T ss_dssp             TTTEEEEEEECTT-CCEEEE-EEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEEC-SSC
T ss_pred             CCceEEEEEECCC-CcEeec-CCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccC-CCC
Confidence            588 999999852 222111 11111 2334578999999999766555 689999999987631  011444443 356


Q ss_pred             EEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEec-cccccccc---eeEEEEeeeCCCcEEE-EecCCC
Q 048511          225 VMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVA-RPQVHGHD---INCVTIIQGKGNHRFV-SGADEK  298 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~---i~~~~~~~~~~~~~l~-s~~~dg  298 (351)
                      +..++|+|+|++|+.++ .++.|.+||+.+++..     ....+. ....+...   ...++|+|  ++++|+ ++..++
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~  295 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS-----FVKSFGHGLLIDPRPLFGANQMALNK--TETKLFISANISR  295 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-----EEEEEECCCCCCCGGGTTCCCEEECT--TSSEEEEEETTTT
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-----eecccccccccCCCCcccccceEECC--CCCEEEEecCCCC
Confidence            78899999999776554 5788999999887621     111111 11111222   35689999  887764 555678


Q ss_pred             eEEEEecCchhhhce
Q 048511          299 VARVFEAPLSFLKTL  313 (351)
Q Consensus       299 ~v~vw~~~~~~~~~~  313 (351)
                      .|.+||+....+..+
T Consensus       296 ~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          296 ELKVFTISGKVVGYV  310 (331)
T ss_dssp             EEEEEETTSCEEEEC
T ss_pred             cEEEEEecCCcccce
Confidence            999999986554433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=3.8e-22  Score=181.55  Aligned_cols=278  Identities=14%  Similarity=0.083  Sum_probs=198.6

Q ss_pred             CCCCceEEEEEc--cCCCceEEEEeeeecCCceeEEEeeCCcccCCCC----CccEEEEeeC-CCcEEEEecCCCcccce
Q 048511            2 GGLDNKIHLYRG--QRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA----ISILLVSSSQ-DKVIRIWKLALRGSSAN   74 (351)
Q Consensus         2 g~~dg~i~vw~~--~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~----~~~~l~t~~~-dg~i~iwd~~~~~~~~~   74 (351)
                      ++.|++|++||+  .+ +  ..+.++. +...+..++|+        +    ++++|++++. +++|.+||..+.+.+..
T Consensus       196 ~~~d~~V~v~D~~~~t-~--~~~~~i~-~g~~p~~va~s--------p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          196 IGRDARIDMIDLWAKE-P--TKVAEIK-IGIEARSVESS--------KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             EETTSEEEEEETTSSS-C--EEEEEEE-CCSEEEEEEEC--------CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             ECCCCeEEEEECcCCC-C--cEEEEEe-cCCCcceEEeC--------CCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence            467899999999  55 5  4566776 45568999999        8    8999999884 89999999998877665


Q ss_pred             eecc----------cccceeeeEeeecCCeEE-ecCCceeEEEEEec---------cccccceEEEEecCCCCCCCCCcc
Q 048511           75 TQST----------YRKEVISLASYIEGPVLV-AGSSSYQVSVESLL---------IGHEDWVYSVQWEPPSTAPSDGVS  134 (351)
Q Consensus        75 ~~~~----------~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~~~~~~  134 (351)
                      +...          ....+..+.+++++..++ ....++.+.++..-         ..+...+.++.|+      +++++
T Consensus       264 i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~s------pdg~~  337 (543)
T 1nir_A          264 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWD------SSHRY  337 (543)
T ss_dssp             EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEEC------TTSCE
T ss_pred             ecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceEC------CCCCE
Confidence            5431          122567888999776554 44555666555421         1244567788999      78886


Q ss_pred             cCCCceeEEe-ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEe-eCCeEEEEEcccCcc--
Q 048511          135 CQQPSSILSA-SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHG-YGGAFHLWRNVGVDI--  209 (351)
Q Consensus       135 ~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~-~dg~i~~~d~~~~~~--  209 (351)
                            |+++ ..+++|.+||+.+  ++.+..+..... .|......+ ++|+ +..++++. .|++|.+||+.+...  
T Consensus       338 ------l~va~~~~~~v~v~D~~t--g~l~~~i~~g~~-ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~  407 (543)
T 1nir_A          338 ------FMTAANNSNKVAVIDSKD--RRLSALVDVGKT-PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ  407 (543)
T ss_dssp             ------EEEEEGGGTEEEEEETTT--TEEEEEEECSSS-BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred             ------EEEEecCCCeEEEEECCC--CeEEEeeccCCC-CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence                  6554 5689999999998  777777664322 233323333 4777 55566665 579999999987321  


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEe-------CCCcEEEEcCCCccccccCccceEEe--c---cccccccce
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-------HDQTTRVFAPWKNVASLMGENSWHEV--A---RPQVHGHDI  277 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~--~---~~~~~~~~i  277 (351)
                      ..+++++++..|...+..|+++|++++|++++       .+++|.|||+.+.+..      .+.+  .   .+..+...+
T Consensus       408 ~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~------~~~~~v~~~~~~~~~~~~~  481 (543)
T 1nir_A          408 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK------YQVLPIAEWADLGEGAKRV  481 (543)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC------CEEECHHHHHCCCSSCCEE
T ss_pred             hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC------eEEeechhhcccCCCCCce
Confidence            12477888998988889999999999999987       2679999999988731      1121  1   123456779


Q ss_pred             eEEEEeeeCCCcEEEEe-----cCCCeEEEEecC-chhhhceee
Q 048511          278 NCVTIIQGKGNHRFVSG-----ADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       278 ~~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      ..+.|++  +|+.++.+     +.|+.|.|||.. ++++++++.
T Consensus       482 ~~~~~~~--~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          482 VQPEYNK--RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             EEEEECS--SSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EeccCCC--CCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            9999999  88887754     358999999987 777777664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=6.2e-21  Score=164.46  Aligned_cols=268  Identities=11%  Similarity=0.043  Sum_probs=177.4

Q ss_pred             CCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCCCcccceee-
Q 048511            2 GGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLALRGSSANTQ-   76 (351)
Q Consensus         2 g~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~-   76 (351)
                      ++.++.|.+|+++. .+++..+. ...+...+..++|+        ++++ |++++.   ++.|.+|++.++....... 
T Consensus        12 ~~~~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~s--------pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~   81 (347)
T 3hfq_A           12 KKTSQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALS--------AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV   81 (347)
T ss_dssp             SSSCCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEEC--------TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEc--------cCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence            34567788887764 25544433 34456778899999        8888 555544   6899999997654322111 


Q ss_pred             cccccceeeeEeeecCCeEEecC-CceeEEEEEec-----------cc---------cccceEEEEecCCCCCCCCCccc
Q 048511           77 STYRKEVISLASYIEGPVLVAGS-SSYQVSVESLL-----------IG---------HEDWVYSVQWEPPSTAPSDGVSC  135 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-----------~~---------h~~~v~~l~~~p~~~~~~~~~~~  135 (351)
                      ......+..++++++|+.++++. .++.+.++..-           ..         +...+.+++|+      +++++ 
T Consensus        82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s------pdg~l-  154 (347)
T 3hfq_A           82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT------PDNRL-  154 (347)
T ss_dssp             EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC------TTSCE-
T ss_pred             ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC------CCCcE-
Confidence            22345677899999999887765 55555554431           10         11237789999      67778 


Q ss_pred             CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEccc--CcccCc
Q 048511          136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVG--VDIDNW  212 (351)
Q Consensus       136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~--~~~~~~  212 (351)
                           +++...++.|.+||+... +......... . .....+..++|+|+|++++++ ..++.|.+|++..  ++.   
T Consensus       155 -----~v~~~~~~~v~~~~~~~~-g~~~~~~~~~-~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~---  223 (347)
T 3hfq_A          155 -----AVIDLGSDKVYVYNVSDA-GQLSEQSVLT-M-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF---  223 (347)
T ss_dssp             -----EEEETTTTEEEEEEECTT-SCEEEEEEEE-C-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE---
T ss_pred             -----EEEeCCCCEEEEEEECCC-CcEEEeeeEE-c-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce---
Confidence                 888888999999999831 4332221111 1 122357789999999976664 5678999999874  321   


Q ss_pred             ccccccccc------cccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          213 QPQKVPSGH------FAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       213 ~~~~~~~~~------~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ..+..+...      ...+..++|+|+|++| ++...++.|.+|++....       .+..+.....++..+..++|+| 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-------~~~~~~~~~~~~~~~~~~~~sp-  295 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-------HLTLIQQISTEGDFPRDFDLDP-  295 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-------CEEEEEEEECSSSCCCEEEECT-
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-------cEEEeEEEecCCCCcCeEEECC-
Confidence            112222211      1458899999999987 455668999999997432       2234444445566689999999 


Q ss_pred             CCCcEEEEec-CCCeEEEEecC
Q 048511          286 KGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       286 ~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                       ++++|++++ .++.|.+|+++
T Consensus       296 -dg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          296 -TEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             -TSSEEEEEETTTTEEEEEEEC
T ss_pred             -CCCEEEEEEcCCCcEEEEEEe
Confidence             888777666 55999999553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=4.9e-20  Score=159.73  Aligned_cols=268  Identities=15%  Similarity=0.152  Sum_probs=175.8

Q ss_pred             CCCCceEEEEEccC-CCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC----CcEEEEecCCC-ccccee
Q 048511            2 GGLDNKIHLYRGQR-TGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD----KVIRIWKLALR-GSSANT   75 (351)
Q Consensus         2 g~~dg~i~vw~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~-~~~~~~   75 (351)
                      ++.++.|++|+++. .+++..+..+  |...+..++|+        +++++|++++.+    +.|.+|++... ..+...
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~s--------pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPS--------ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEEC--------TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEEC--------CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            35678899997743 1666555555  77888999999        889999999876    79999998764 222222


Q ss_pred             ec--ccccceeeeEeeecCCeEEecC-CceeEEEEEeccc----------------------cccceEEEEecCCCCCCC
Q 048511           76 QS--TYRKEVISLASYIEGPVLVAGS-SSYQVSVESLLIG----------------------HEDWVYSVQWEPPSTAPS  130 (351)
Q Consensus        76 ~~--~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~----------------------h~~~v~~l~~~p~~~~~~  130 (351)
                      ..  ........+++  +++.++++. .++.+.++..-..                      +...+.+++|+      |
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s------p  164 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT------P  164 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC------T
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC------C
Confidence            11  12234555555  777666654 4555655543110                      11234789999      7


Q ss_pred             CCcccCCCceeEE-eecCCeEEEEeccCCCc----c-eE-----EEEEeccccccccceEEEEEcCCCCEEEEEe-eCCe
Q 048511          131 DGVSCQQPSSILS-ASMDKTMMIWQPEKTTG----I-WM-----NVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGA  198 (351)
Q Consensus       131 ~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~----~-~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~  198 (351)
                      ++++      +++ ...++.|.+|++....+    + ..     ....    .........++|+|+++++++++ .++.
T Consensus       165 dg~~------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          165 DGKY------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK----VAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             TSSE------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CCCE------EEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee----cCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            8885      544 44589999999986433    2 11     1111    12344578999999999888777 6899


Q ss_pred             EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511          199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      |.+|++.++.......+.....+...+..++|+|+|++|+++..  ++.|.+|++.....      .+..+..... +..
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g------~~~~~~~~~~-g~~  307 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG------TLTKVGYQLT-GIH  307 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC------CEEEEEEEEC-SSC
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC------cEEEeeEecC-CCC
Confidence            99999986542111222233334456789999999999876655  48999999863210      1223333323 456


Q ss_pred             eeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511          277 INCVTIIQGKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       277 i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                      +.+++|+|  ++++|++++ .++.|.+|+++
T Consensus       308 ~~~~~~sp--dg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          308 PRNFIITP--NGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CCEEEECT--TSCEEEEEETTTTEEEEEEEC
T ss_pred             CceEEECC--CCCEEEEEECCCCCEEEEEEE
Confidence            88999999  898777776 78999997654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=5.3e-22  Score=175.91  Aligned_cols=221  Identities=12%  Similarity=0.045  Sum_probs=152.2

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      ...++.++++        +++.++++++.|+ +++|+........... .   ...         .+...      .. .
T Consensus        36 ~~~~n~lavs--------~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~---~~~---------~~~~~------~~-~   86 (434)
T 2oit_A           36 KERSSLLAVS--------NKYGLVFAGGASG-LQIFPTKNLLIQNKPG-D---DPN---------KIVDK------VQ-G   86 (434)
T ss_dssp             CSCCBCEEEE--------TTTTEEEEEETTE-EEEEEHHHHCCCCCTT-C---CTT---------CEEEC------CC-C
T ss_pred             CCCccEEEEe--------cCCCEEEEECCCE-EEEEEchHhhhhcccc-c---Ccc---------ccccc------Cc-c
Confidence            3468899999        7888999999888 8998864321110000 0   000         00000      00 0


Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeE----EeecCCeEEEEeccCC-----Cc-ceEEEEEeccccccccce
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL----SASMDKTMMIWQPEKT-----TG-IWMNVVTVGELSHSALGF  178 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~----s~~~d~~i~iwd~~~~-----~~-~~~~~~~~~~~~~~~~~i  178 (351)
                      ....+...|.+++|+      +++++      |+    +++.|+.|+|||++..     +. ..+..+.  ...+|...|
T Consensus        87 ~~~~~~~~v~~l~~s------pdg~~------lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~h~~~V  152 (434)
T 2oit_A           87 LLVPMKFPIHHLALS------CDNLT------LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK--LLKDAGGMV  152 (434)
T ss_dssp             EEECCSSCEEEEEEC------TTSCE------EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE--CCCSGGGSE
T ss_pred             ccccCCCcccEEEEc------CCCCE------EEEEEeccCCCceEEEEEccccccCCcCCcceeeeee--ccCCCCCce
Confidence            012356789999999      78888      88    7889999999999762     00 1111222  234688899


Q ss_pred             EEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccc
Q 048511          179 YGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVAS  257 (351)
Q Consensus       179 ~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~  257 (351)
                      .+++|+|+ +.+|++++.||+|++||++++.     ......+|...|++++|+|+|++|++|+.||.|++||++ +.. 
T Consensus       153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-  225 (434)
T 2oit_A          153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-  225 (434)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-
T ss_pred             EEEEECCCCCCEEEEEECCCeEEEEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-
Confidence            99999998 7899999999999999998862     344555688899999999999999999999999999997 321 


Q ss_pred             ccCccceEEecccc----ccccceeEEEEeeeCCCcEEEE-ecCCC------eEEEEecCc
Q 048511          258 LMGENSWHEVARPQ----VHGHDINCVTIIQGKGNHRFVS-GADEK------VARVFEAPL  307 (351)
Q Consensus       258 ~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s-~~~dg------~v~vw~~~~  307 (351)
                            ...+....    .|...+.+++|++  ++.++++ ...||      .+++|++..
T Consensus       226 ------~~~~~~~~~~~~~~~~~v~~v~w~~--~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          226 ------KKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             ------EEEECCCTTCCTTSCEEEEEEEEEE--TTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             ------cccccCCcccCCCCceeEEEEEEec--CceEEEEEccCCCccCCCCceEEEEecc
Confidence                  11121111    2334799999999  7776644 33443      389999873

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=4.2e-21  Score=164.49  Aligned_cols=261  Identities=10%  Similarity=0.043  Sum_probs=180.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeee-cCC-ceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKG-HTD-WIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~-h~~-~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      ++.+++|++||+.+ ++  .+..+.. +.. .+..++|+        ++++++ ++++.++.|.+||+.+++........
T Consensus         7 ~~~~~~v~~~d~~~-~~--~~~~~~~~~~~~~~~~~~~s--------~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            7 PARPDKLVVIDTEK-MA--VDKVITIADAGPTPMVPMVA--------PGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EETTTEEEEEETTT-TE--EEEEEECTTCTTCCCCEEEC--------TTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCeEEEEECCC-Cc--EEEEEEcCCCCCCccceEEc--------CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            56799999999998 64  3444442 222 48899999        788665 55666889999999988765544432


Q ss_pred             c----ccceeeeEeeecCCeEEecC------------CceeEEEEEecc-------ccccceEEEEecCCCCCCCCCccc
Q 048511           79 Y----RKEVISLASYIEGPVLVAGS------------SSYQVSVESLLI-------GHEDWVYSVQWEPPSTAPSDGVSC  135 (351)
Q Consensus        79 ~----~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~-------~h~~~v~~l~~~p~~~~~~~~~~~  135 (351)
                      .    ...+..++++++|+.++++.            .+..+.++..-.       .....+.+++|+      ++++. 
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s------~dg~~-  148 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA------RDGSK-  148 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC------TTSSC-
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEEC------CCCCE-
Confidence            2    12566889999999888774            345555443211       113356778899      78887 


Q ss_pred             CCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-C-----------------
Q 048511          136 QQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-G-----------------  197 (351)
Q Consensus       136 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g-----------------  197 (351)
                           |+++  ++.|.+||+.+  +.....+....   ...   .+.|+|+++.++..+.. +                 
T Consensus       149 -----l~~~--~~~i~~~d~~~--~~~~~~~~~~~---~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T 1pby_B          149 -----LYGL--GRDLHVMDPEA--GTLVEDKPIQS---WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD  213 (337)
T ss_dssp             -----EEEE--SSSEEEEETTT--TEEEEEECSTT---TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred             -----EEEe--CCeEEEEECCC--CcEeeeeeccc---cCC---CceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence                 7777  68899999998  66655544211   112   23788988866554432 2                 


Q ss_pred             ------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          198 ------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       198 ------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                            .|.+||+.+++.   . ...+..+...+.+++|+|++++|+++  ++.|++||+.+++          .+..+.
T Consensus       214 ~~~~~~~v~~~d~~~~~~---~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~----------~~~~~~  277 (337)
T 1pby_B          214 PTAYRTGLLTMDLETGEM---A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA----------SIKRVP  277 (337)
T ss_dssp             GGGEEEEEEEEETTTCCE---E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE----------EEEEEE
T ss_pred             ccccccceEEEeCCCCCc---e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc----------Ccceec
Confidence                  478999988642   1 22334455678899999999999887  7999999998775          222222


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                       ....+.+++|+|  ++++|++++.++.|++||+. ++.+..+.
T Consensus       278 -~~~~~~~~~~s~--dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          278 -LPHSYYSVNVST--DGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             -CSSCCCEEEECT--TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             -CCCceeeEEECC--CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence             224578999999  89988888999999999987 55555543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=7.3e-20  Score=172.65  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=179.5

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC-----Ccccceeecc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL-----RGSSANTQST   78 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~-----~~~~~~~~~~   78 (351)
                      .|+.|++||+.+ ++.   ..+..|...+.+++|+        |+|++|+++ .|+.|.+|++.+     ++........
T Consensus        99 ~~~~i~~~d~~~-~~~---~~l~~~~~~~~~~~~S--------pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~  165 (706)
T 2z3z_A           99 TQGGLVGFDMLA-RKV---TYLFDTNEETASLDFS--------PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG  165 (706)
T ss_dssp             ETTEEEEEETTT-TEE---EEEECCTTCCTTCEEC--------TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC
T ss_pred             ECCEEEEEECCC-Cce---EEccCCcccccCCcCC--------CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC
Confidence            468999999988 643   3445567789999999        889999985 689999999987     6544322222


Q ss_pred             cc-------------cceeeeEeeecCCeEEecC---------------------------------CceeEEEEEe---
Q 048511           79 YR-------------KEVISLASYIEGPVLVAGS---------------------------------SSYQVSVESL---  109 (351)
Q Consensus        79 ~~-------------~~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~---  109 (351)
                      ..             .....+.|+|+|+.|+.+.                                 ....+.++..   
T Consensus       166 ~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~  245 (706)
T 2z3z_A          166 TETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG  245 (706)
T ss_dssp             BTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT
T ss_pred             CCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC
Confidence            11             1147889999999998875                                 2334444321   


Q ss_pred             ----c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccc
Q 048511          110 ----L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALG  177 (351)
Q Consensus       110 ----~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (351)
                          +   ..|...+.+++|+      +|++.      |++++.++     .|++||+.+  +.....+...........
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~s------pdg~~------l~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          246 KTVYLQTGEPKEKFLTNLSWS------PDENI------LYVAEVNRAQNECKVNAYDAET--GRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEECCCCSCTTCEEEEEEEC------TTSSE------EEEEEECTTSCEEEEEEEETTT--CCEEEEEEEEECSSCCCC
T ss_pred             ceEeeccCCCCceeEeeEEEE------CCCCE------EEEEEeCCCCCeeEEEEEECCC--CceeeEEEEccCCCeECc
Confidence                1   1456679999999      79998      88888776     899999988  522222221111111112


Q ss_pred             eEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEE-EEeecCCCEEEEEeC-CC----cEEEE
Q 048511          178 FYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-ISWSRSSDYLLSVSH-DQ----TTRVF  249 (351)
Q Consensus       178 i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~s~~~-dg----~i~vw  249 (351)
                      +..++|+|  ++++++++..++.++||++....    ..+..+..+...+.. ++|+|+++.|+.++. ++    .|..|
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~----~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG----RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTS----CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCC----CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            46789999  99999999999999999886221    335566667777876 799999988765554 44    56667


Q ss_pred             cCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC----CeEEEEecCch
Q 048511          250 APWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE----KVARVFEAPLS  308 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~v~vw~~~~~  308 (351)
                      |+.++..        ..+    .+...+.+++|+|  ++++|+....+    +.|++||+.+.
T Consensus       388 d~~~~~~--------~~l----~~~~~~~~~~~sp--dg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          388 DIKGGKT--------KDL----TPESGMHRTQLSP--DGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             ETTCCCC--------EES----CCSSSEEEEEECT--TSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EcCCCCc--------eec----cCCCceEEEEECC--CCCEEEEEecCCCCCcEEEEEECCCC
Confidence            7655431        122    2455688999999  88888765433    56999998743

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=6e-20  Score=173.69  Aligned_cols=264  Identities=8%  Similarity=0.016  Sum_probs=171.0

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCCccEEEEeeCC---------CcEEEEecCCCc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAISILLVSSSQD---------KVIRIWKLALRG   70 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~   70 (351)
                      +.||+|++||+.+ ++.  ...+.+|..   .|.+++|+        |+|++|++++.+         +.|.+||+.+++
T Consensus        34 ~~dg~i~~~d~~~-g~~--~~~~~~~~~~~~~v~~~~~S--------pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  102 (723)
T 1xfd_A           34 EQKGTVRLWNVET-NTS--TVLIEGKKIESLRAIRYEIS--------PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (723)
T ss_dssp             CSSSCEEEBCGGG-CCC--EEEECTTTTTTTTCSEEEEC--------TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             eCCCCEEEEECCC-CcE--EEEeccccccccccceEEEC--------CCCCEEEEEecCccceeecceeeEEEEECCCCc
Confidence            5789999999998 643  345556654   49999999        899999999875         778899999876


Q ss_pred             ccceee-cccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccc------------------eEEEEec
Q 048511           71 SSANTQ-STYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDW------------------VYSVQWE  123 (351)
Q Consensus        71 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~------------------v~~l~~~  123 (351)
                      ...... ......+..++|+|+|+.++.+.. ..+.++.        ....+...                  +.+++|+
T Consensus       103 ~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S  181 (723)
T 1xfd_A          103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (723)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEEC
Confidence            521111 111223678899999998887654 3343332        12222222                  2789999


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCC----------------------------------eEEEEeccCCCcceEEEEEec
Q 048511          124 PPSTAPSDGVSCQQPSSILSASMDK----------------------------------TMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       124 p~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~~  169 (351)
                            ||++.      |++++.|+                                  .|++||+.+  +.....+...
T Consensus       182 ------pDg~~------la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~  247 (723)
T 1xfd_A          182 ------PDGTR------LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPP  247 (723)
T ss_dssp             ------TTSSE------EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCC
T ss_pred             ------CCCCE------EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCC
Confidence                  79998      98887653                                  789999987  4432333210


Q ss_pred             -cccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCccccccccc-ccccE----EEEEeecCCCEEEE
Q 048511          170 -ELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSG-HFAAV----MDISWSRSSDYLLS  239 (351)
Q Consensus       170 -~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~-~~~~v----~~v~~sp~~~~l~s  239 (351)
                       ....+...+..++|+|||+++++....    ..|++||+.+++     +...+.. +...+    ..++|+|||+.|+.
T Consensus       248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  322 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF  322 (723)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred             ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence             011235678999999999988776543    579999998864     2222222 33333    37899999997765


Q ss_pred             --EeCCC------cEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEEEEecC-C--CeEEEEecC
Q 048511          240 --VSHDQ------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFVSGAD-E--KVARVFEAP  306 (351)
Q Consensus       240 --~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~-d--g~v~vw~~~  306 (351)
                        ...++      .|++||+..+...    .   ....+..+...+.. ++|+|  +++.|+..+. +  +.++||+++
T Consensus       323 ~~~~~~~~~~~~~~l~~~d~~~~~~~----~---~~~~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          323 IRAIPQGGRGKFYHITVSSSQPNSSN----D---NIQSITSGDWDVTKILAYDE--KGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEECCSSSSCEEEEEEECSSCCSSS----C---CCCBSCCSSSCEEEEEEEET--TTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EEecccCCCcceeEEEEEeccCCCCc----c---ceeEeecCCeEEEeeeEEcC--CCCEEEEEEcCCCCcceEEEEEe
Confidence              44566      5777773222200    0   01222222233444 68999  8888875554 4  789999975

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3e-20  Score=171.42  Aligned_cols=232  Identities=10%  Similarity=-0.003  Sum_probs=163.3

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC---ceeE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS---SYQV  104 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~  104 (351)
                      ..+|++++|+        +||++||+++. ||+++||++..+.. ..+.......+..++|+|+ ++++++..   +...
T Consensus        21 ~~~~~~~~~~--------~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           21 AVEKYSLQGV--------VDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HSCEEEEEEE--------ETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             ccchheeecC--------CCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence            5689999999        89999999887 99999999865443 2232222246778889988 66665443   2222


Q ss_pred             EEEEe-c--cc------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          105 SVESL-L--IG------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       105 ~~~~~-~--~~------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      .++.. .  .+      ....+...+|+      ++++.    ..+++++.++ +.+||+.+  +.......      +.
T Consensus        91 ~l~~~~~~~~g~~~~l~~~~~~~~~~~s------~dg~~----~~~~s~~~~~-~~l~d~~~--g~~~~l~~------~~  151 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQRLEAVKPMRILSGV------DTGEA----VVFTGATEDR-VALYALDG--GGLRELAR------LP  151 (582)
T ss_dssp             EEEEEETTSTTCCEECTTSCSBEEEEEE------ECSSC----EEEEEECSSC-EEEEEEET--TEEEEEEE------ES
T ss_pred             EEEEEeccCCCccccccCCCCceeeeeC------CCCCe----EEEEecCCCC-ceEEEccC--CcEEEeec------CC
Confidence            22211 1  11      11234456777      45532    0145555554 55999987  54433322      11


Q ss_pred             cceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEE
Q 048511          176 LGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVF  249 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vw  249 (351)
                      .  .+++|+|||++|++++.+    +.|++||+.+++      ...+..|...+..++|+|||++|+++..++  .|++|
T Consensus       152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTV  223 (582)
T ss_dssp             S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred             C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence            2  789999999999988877    789999998864      346677888899999999999999888888  89999


Q ss_pred             cCCCccccccCccceEEeccccccccceeEEE--------EeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511          250 APWKNVASLMGENSWHEVARPQVHGHDINCVT--------IIQGKGNHRFVSGADEKVARVFEAPLSFLK  311 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  311 (351)
                      |+.+++          .. ....|...+..++        |+|  |+.++++++.|+.+++|++ ++.+.
T Consensus       224 d~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~g~~~l~~~-g~~~~  279 (582)
T 3o4h_A          224 DPRDGS----------VE-DLELPSKDFSSYRPTAITWLGYLP--DGRLAVVARREGRSAVFID-GERVE  279 (582)
T ss_dssp             CTTTCC----------EE-ECCCSCSHHHHHCCSEEEEEEECT--TSCEEEEEEETTEEEEEET-TEEEC
T ss_pred             cCCCCc----------EE-EccCCCcChhhhhhccccceeEcC--CCcEEEEEEcCCcEEEEEE-CCeec
Confidence            998776          22 3445666666677        999  8889999999999999999 65443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=3.3e-20  Score=175.99  Aligned_cols=260  Identities=9%  Similarity=0.027  Sum_probs=177.9

Q ss_pred             eEEEEEccCCCceEEEEeeeecC----------------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEE
Q 048511            7 KIHLYRGQRTGKFVRACELKGHT----------------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIW   64 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~----------------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iw   64 (351)
                      +|++||+.+ ++...+.....+.                      ..|.+++|+        ++|++|++++. +.|.+|
T Consensus        65 ~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S--------pDg~~l~~~~~-~~i~~~  134 (741)
T 2ecf_A           65 DLWSYDIGS-GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS--------PDAQRLLFPLG-GELYLY  134 (741)
T ss_dssp             EEEEEETTT-CCEEEEECGGGTC--------------------CCEESCCCEEC--------TTSSEEEEEET-TEEEEE
T ss_pred             EEEEEECCC-CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC--------CCCCEEEEEeC-CcEEEE
Confidence            899999998 7554443333332                      348899999        89999999986 899999


Q ss_pred             ecCCC---cccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccc----------------e
Q 048511           65 KLALR---GSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDW----------------V  117 (351)
Q Consensus        65 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~----------------v  117 (351)
                      |+.++   .... + ......+..+.|+|+|+.++.+... .+.++..        ...+...                +
T Consensus       135 d~~~~~~~~~~~-l-~~~~~~~~~~~~SPDG~~la~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  211 (741)
T 2ecf_A          135 DLKQEGKAAVRQ-L-THGEGFATDAKLSPKGGFVSFIRGR-NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH  211 (741)
T ss_dssp             ESSSCSTTSCCB-C-CCSSSCEEEEEECTTSSEEEEEETT-EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred             ECCCCCcceEEE-c-ccCCcccccccCCCCCCEEEEEeCC-cEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence            99887   3322 2 2224567889999999988876543 4544432        1122221                4


Q ss_pred             EEEEecCCCCCCCCCcccCCCceeEEeecCC---------------------------------eEEEEeccC-CCcceE
Q 048511          118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDK---------------------------------TMMIWQPEK-TTGIWM  163 (351)
Q Consensus       118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~---------------------------------~i~iwd~~~-~~~~~~  163 (351)
                      ..+.|+      ||++.      |++++.|+                                 .|.+||+.+ .+.   
T Consensus       212 ~~~~~S------pDg~~------l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---  276 (741)
T 2ecf_A          212 TGYWWA------PDDSA------IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT---  276 (741)
T ss_dssp             CSEEEC------TTSSC------EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC---
T ss_pred             cceEEC------CCCCE------EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce---
Confidence            679999      79998      99998776                                 788889875 432   


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEee-----CCeEEEEEcccCcccCcccccccccccc----cEEEEEeecCC
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----GGAFHLWRNVGVDIDNWQPQKVPSGHFA----AVMDISWSRSS  234 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~~~~~----~v~~v~~sp~~  234 (351)
                      ..+..  ...+...+..++| |+|++|++++.     +..|++||+.+++     ....+..+..    .+..++|+|||
T Consensus       277 ~~~~~--~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          277 QWIDL--GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----QRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             EEECC--CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             EEecC--CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----eEEEEEcCCCCcCCcCCceEECCCC
Confidence            11211  1135667899999 99999987765     5689999998874     2333333332    34678999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEE-EEeeeCCCcEEE-EecCCC--eEEEEecC--ch
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV-TIIQGKGNHRFV-SGADEK--VARVFEAP--LS  308 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~-s~~~dg--~v~vw~~~--~~  308 (351)
                      +++++++.|+.++||.+....      .    ...+..+...+..+ +|+|  +++.|+ +++.++  .++||+++  +.
T Consensus       349 ~~~~~~~~~g~~~l~~~~~~~------~----~~~l~~~~~~v~~~~~~s~--dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRIDSKG------K----AAALTHGNWSVDELLAVDE--KAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             CEEEEECTTSSCEEEEECSSS------C----EEESCCSSSCEEEEEEEET--TTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             eEEEEecCCCccEEEEEcCCC------C----eeeeeecceEEEeEeEEeC--CCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            999999999988888775332      1    22333455667777 5999  887664 555565  89999864  44


Q ss_pred             hhhcee
Q 048511          309 FLKTLN  314 (351)
Q Consensus       309 ~~~~~~  314 (351)
                      ..+.+.
T Consensus       417 ~~~~l~  422 (741)
T 2ecf_A          417 QPQRLS  422 (741)
T ss_dssp             CCEECC
T ss_pred             Ceeecc
Confidence            444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=7.2e-20  Score=162.24  Aligned_cols=179  Identities=16%  Similarity=0.177  Sum_probs=127.7

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEE----EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLV----SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .|.+.|++++|+        +++++|+    +++.|++|++||+.+........                        ..
T Consensus        90 ~~~~~v~~l~~s--------pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~------------------------~~  137 (434)
T 2oit_A           90 PMKFPIHHLALS--------CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ------------------------KR  137 (434)
T ss_dssp             CCSSCEEEEEEC--------TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS------------------------CC
T ss_pred             cCCCcccEEEEc--------CCCCEEEEEEeccCCCceEEEEEccccccCCcCC------------------------cc
Confidence            356789999999        8899999    88999999999987541000000                        00


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                      .+.....+.+|...|.+++|+|     .++.+      |++++.||+|++||+++  +.......     .|...|.+++
T Consensus       138 ~~~~~~~~~~h~~~V~~v~~~p-----~~~~~------las~s~Dg~v~iwD~~~--~~~~~~~~-----~~~~~v~~v~  199 (434)
T 2oit_A          138 PFAYHKLLKDAGGMVIDMKWNP-----TVPSM------VAVCLADGSIAVLQVTE--TVKVCATL-----PSTVAVTSVC  199 (434)
T ss_dssp             CSEEEECCCSGGGSEEEEEECS-----SCTTE------EEEEETTSCEEEEEESS--SEEEEEEE-----CGGGCEEEEE
T ss_pred             eeeeeeccCCCCCceEEEEECC-----CCCCE------EEEEECCCeEEEEEcCC--Ccceeecc-----CCCCceeEEE
Confidence            0012345678999999999995     33778      99999999999999998  54433332     5778899999


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-cccccEEEEEeecCCCEEEEE-eCCC------cEEEEcCCCc
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSV-SHDQ------TTRVFAPWKN  254 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~-~~dg------~i~vwd~~~~  254 (351)
                      |+|++++|++|+.||.|++||++.............. .|...|.+++|++++.++++. +.||      .+++|+++..
T Consensus       200 wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          200 WSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999999999999999999832110000000111 234589999999998877543 3343      3899999865


Q ss_pred             c
Q 048511          255 V  255 (351)
Q Consensus       255 ~  255 (351)
                      .
T Consensus       280 ~  280 (434)
T 2oit_A          280 E  280 (434)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=6.8e-20  Score=173.82  Aligned_cols=240  Identities=9%  Similarity=0.052  Sum_probs=171.2

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeC-CC-----cEEEEecCCCcccceeecccc----------------------
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQ-DK-----VIRIWKLALRGSSANTQSTYR----------------------   80 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg-----~i~iwd~~~~~~~~~~~~~~~----------------------   80 (351)
                      ...|.+++|+        ++|++|++++. |+     .|.+||+.+++..........                      
T Consensus        36 ~~~~~~~~~S--------pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           36 GPTLMKPKVA--------PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCCEEEEEC--------TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------C
T ss_pred             CCCCCCceEe--------cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            3468999999        89999999998 88     899999998765443322111                      


Q ss_pred             -cceeeeEeeecCCeEEecCCceeEEEEEe----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           81 -KEVISLASYIEGPVLVAGSSSYQVSVESL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        81 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                       ..+..++|+|+|+.|+.+.. ..+.++..          +..|...+.+++|+      |||+.      |+.++ ++.
T Consensus       108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S------PDG~~------la~~~-~~~  173 (741)
T 2ecf_A          108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS------PKGGF------VSFIR-GRN  173 (741)
T ss_dssp             CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC------TTSSE------EEEEE-TTE
T ss_pred             ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC------CCCCE------EEEEe-CCc
Confidence             23678999999999888765 55554432          33466789999999      79998      88886 568


Q ss_pred             EEEEeccCCCcceEEEEEecccccccc----------------ceEEEEEcCCCCEEEEEeeCC----------------
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSAL----------------GFYGGHWSPDGRSILAHGYGG----------------  197 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~~~~~~l~~~~~dg----------------  197 (351)
                      |++||+..  +.......     .+..                .+..++|+|||++|++++.|+                
T Consensus       174 i~~~d~~~--g~~~~~~~-----~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~  246 (741)
T 2ecf_A          174 LWVIDLAS--GRQMQLTA-----DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRT  246 (741)
T ss_dssp             EEEEETTT--TEEEECCC-----CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred             EEEEecCC--CCEEEecc-----CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcc
Confidence            99999987  54332221     1111                146799999999999988775                


Q ss_pred             -----------------eEEEEEccc-CcccCcccccccccccccEEEEEeecCCCEEEEEeC-----CCcEEEEcCCCc
Q 048511          198 -----------------AFHLWRNVG-VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-----DQTTRVFAPWKN  254 (351)
Q Consensus       198 -----------------~i~~~d~~~-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-----dg~i~vwd~~~~  254 (351)
                                       .|++||+.+ ++.   ..+.....|...+..++| |||++|++++.     +..|++||+.++
T Consensus       247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          247 DVIEQRYPAAGDANVQVKLGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             cceEeecCCCCCCCCeeEEEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence                             888999887 642   111111247778999999 99999987654     578999999887


Q ss_pred             cccccCccceEEecccccccc----ceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhcee
Q 048511          255 VASLMGENSWHEVARPQVHGH----DINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTLN  314 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~  314 (351)
                      +.          ......+..    .+..++|+|  |++++++++.||.++||.++  +. ...+.
T Consensus       323 ~~----------~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          323 QQ----------RVLAHETSPTWVPLHNSLRFLD--DGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             CE----------EEEEEEECSSCCCCCSCCEECT--TSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             ce----------EEEEEcCCCCcCCcCCceEECC--CCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence            62          111112221    356899999  88899999999988887654  44 44443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=7.5e-19  Score=151.52  Aligned_cols=246  Identities=5%  Similarity=-0.030  Sum_probs=173.0

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccccc--
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTYRK--   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~--   81 (351)
                      ++.|.+||..+ ++.  +..+.. ...+..++|+        ++++++ ++...++.|.+||..+++...........  
T Consensus        68 ~~~v~~~d~~~-~~~--~~~~~~-~~~~~~~~~s--------~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  135 (353)
T 3vgz_A           68 GGVVYRLDPVT-LEV--TQAIHN-DLKPFGATIN--------NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT  135 (353)
T ss_dssp             SEEEEEECTTT-CCE--EEEEEE-SSCCCSEEEE--------TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred             CccEEEEcCCC-CeE--EEEEec-CCCcceEEEC--------CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence            78999999998 643  334443 3457889999        778755 45566899999999988766555432211  


Q ss_pred             ------ceeeeEeeecCCeEEecC--CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           82 ------EVISLASYIEGPVLVAGS--SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        82 ------~~~~~~~~~~~~~l~~~~--~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                            ....++++++++.++++.  .+..+..+.        .+..+...+.+++|+      ++++.      +++++
T Consensus       136 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~  203 (353)
T 3vgz_A          136 EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD------SEGKR------LYTTN  203 (353)
T ss_dssp             SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE------TTTTE------EEEEC
T ss_pred             cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC------CCCCE------EEEEc
Confidence                  257899999999777754  345554433        233344557788999      78888      89999


Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCccccccccccccc
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      .++.|.+||+.+  ++....+.... ..+...+..++|+|+++++++++.+ +.|.+||+.+++     .+..+....  
T Consensus       204 ~~~~i~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~--  273 (353)
T 3vgz_A          204 ADGELITIDTAD--NKILSRKKLLD-DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-----ILAKVAAPE--  273 (353)
T ss_dssp             TTSEEEEEETTT--TEEEEEEECCC-SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-----EEEEEECSS--
T ss_pred             CCCeEEEEECCC--CeEEEEEEcCC-CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----EEEEEEcCC--
Confidence            999999999998  76666655321 1234567889999999988777654 999999998763     333433322  


Q ss_pred             EEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          225 VMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ...++|+|+++++++++ .++.|.+||..+++          .+..+.. ...+.+++|+|  ++++|+.+..+
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----------~~~~~~~-~~~~~~~~~s~--dg~~l~v~~~~  334 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK----------VVKTFDT-PTHPNSLALSA--DGKTLYVSVKQ  334 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEEEEC-CSEEEEEEECT--TSCEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCe----------EEEEEec-CCCCCeEEEcC--CCCEEEEEEcc
Confidence            25699999999665554 68999999998776          2222222 23578999999  88866655544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=9.7e-19  Score=150.06  Aligned_cols=243  Identities=12%  Similarity=0.091  Sum_probs=160.8

Q ss_pred             CceEEEEEcc--CCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCc---ccceeecc
Q 048511            5 DNKIHLYRGQ--RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRG---SSANTQST   78 (351)
Q Consensus         5 dg~i~vw~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~---~~~~~~~~   78 (351)
                      ++.|++|++.  + +++..+..+..+. .+..++|+        +++++|++++. ++.|.+||+..+.   .....  .
T Consensus        59 ~~~v~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~s--------~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~  126 (343)
T 1ri6_A           59 EFRVLAYRIAPDD-GALTFAAESALPG-SLTHISTD--------HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--E  126 (343)
T ss_dssp             TTEEEEEEECTTT-CCEEEEEEEECSS-CCSEEEEC--------TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--C
T ss_pred             CCeEEEEEecCCC-CceeeccccccCC-CCcEEEEc--------CCCCEEEEEecCCCeEEEEECCCCccccccccc--c
Confidence            4899999998  5 6666666666544 88999999        88988876664 8899999995222   22221  2


Q ss_pred             cccceeeeEeeecCCeEEecC-CceeEEEEEecc-------------c-cccceEEEEecCCCCCCCCCcccCCCceeE-
Q 048511           79 YRKEVISLASYIEGPVLVAGS-SSYQVSVESLLI-------------G-HEDWVYSVQWEPPSTAPSDGVSCQQPSSIL-  142 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-------------~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~-  142 (351)
                      ....+..++++++++.++++. .+..+.++..-.             . ....+..++|+      ++++.      ++ 
T Consensus       127 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------pdg~~------l~~  194 (343)
T 1ri6_A          127 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH------PNEQY------AYC  194 (343)
T ss_dssp             CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC------TTSSE------EEE
T ss_pred             CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC------CCCCE------EEE
Confidence            234577899999999777765 556665544321             1 22367789999      67875      54 


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEecccc---ccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc--CcccCccccc
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGELS---HSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG--VDIDNWQPQK  216 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~--~~~~~~~~~~  216 (351)
                      ++..++.|.+||+....+............   .....+..++|+|++++|+++. .++.|.+||+..  +.   .+.+.
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~---~~~~~  271 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---LSKEG  271 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---EEEEE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc---eEEee
Confidence            445899999999964324332211111111   1134577899999999887555 789999999973  22   13333


Q ss_pred             ccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCC--CccccccCccceEEeccccccccceeEEEEee
Q 048511          217 VPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPW--KNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      .+..+.. +..++|+|++++|++++ .++.|.+|++.  ++.        ++.+..+.. +....+++|.+
T Consensus       272 ~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~--------~~~~~~~~~-g~~p~~i~~~~  332 (343)
T 1ri6_A          272 FQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL--------LHEKGRYAV-GQGPMWVVVNA  332 (343)
T ss_dssp             EEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE--------EEEEEEEEC-SSSCCEEEEEE
T ss_pred             eecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce--------eeEcccccc-CCCCeeEEEEc
Confidence            4443433 88999999999888777 58999999654  433        223333322 24467888887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=1.6e-18  Score=149.39  Aligned_cols=239  Identities=8%  Similarity=0.028  Sum_probs=169.8

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeC-------CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEe-cC
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQ-------DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVA-GS   99 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~   99 (351)
                      ....+..++|+        ++++++++++.       ++.|.+||..+++.......  ......++++++|+.+++ ..
T Consensus        39 ~~~~~~~~~~s--------~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~  108 (353)
T 3vgz_A           39 VGKGAYEMAYS--------QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNT  108 (353)
T ss_dssp             EESSEEEEEEE--------TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEET
T ss_pred             hccCccceEEC--------CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEec
Confidence            34578899999        88888887774       56899999998876655543  235678899999995554 44


Q ss_pred             CceeEEEEEe--------cccccc---------ceEEEEecCCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCc
Q 048511          100 SSYQVSVESL--------LIGHED---------WVYSVQWEPPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTG  160 (351)
Q Consensus       100 ~~~~~~~~~~--------~~~h~~---------~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~  160 (351)
                      .+..+.++..        +..+..         .+.++.|+      ++++.      +++++  .++.|.+||+.+  +
T Consensus       109 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~dg~~------l~~~~~~~~~~i~~~d~~~--~  174 (353)
T 3vgz_A          109 VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD------DATNT------VYISGIGKESVIWVVDGGN--I  174 (353)
T ss_dssp             TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE------TTTTE------EEEEEESSSCEEEEEETTT--T
T ss_pred             CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC------CCCCE------EEEEecCCCceEEEEcCCC--C
Confidence            4555554432        222221         26889999      67776      66665  488999999988  6


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc----cccccEEEEEeecCCCE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS----GHFAAVMDISWSRSSDY  236 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----~~~~~v~~v~~sp~~~~  236 (351)
                      +....+.     .+...+.+++|+|+++++++++.++.|.+||+.+++     ....+.    ++...+..++|+|++++
T Consensus       175 ~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          175 KLKTAIQ-----NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-----ILSRKKLLDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             EEEEEEC-----CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-----EEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred             ceEEEec-----CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-----EEEEEEcCCCCCCcccceEEECCCCCE
Confidence            6655543     233447789999999999999999999999998864     233332    24556888999999998


Q ss_pred             EEEEeC-CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE-EEEecCCCeEEEEecC-chhhhce
Q 048511          237 LLSVSH-DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR-FVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       237 l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                      +++++. ++.|.+||..+++          .+.......  ...++|+|  ++++ +++...++.|.+||.. ++.+..+
T Consensus       245 l~~~~~~~~~v~~~d~~~~~----------~~~~~~~~~--~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          245 AFITDSKAAEVLVVDTRNGN----------ILAKVAAPE--SLAVLFNP--ARNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             EEEEESSSSEEEEEETTTCC----------EEEEEECSS--CCCEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCc----------EEEEEEcCC--CceEEECC--CCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            766655 5999999998876          222221221  25789999  7774 5566689999999986 6555554


Q ss_pred             e
Q 048511          314 N  314 (351)
Q Consensus       314 ~  314 (351)
                      .
T Consensus       311 ~  311 (353)
T 3vgz_A          311 D  311 (353)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=2.8e-18  Score=148.91  Aligned_cols=270  Identities=9%  Similarity=-0.040  Sum_probs=171.6

Q ss_pred             ceEEEEEcc--CCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC-CCcccceeeccccc
Q 048511            6 NKIHLYRGQ--RTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA-LRGSSANTQSTYRK   81 (351)
Q Consensus         6 g~i~vw~~~--~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~~~~   81 (351)
                      +.|.+|+++  + +++..+.... ++...+..++|+        +++++|++++.+ .|.+|++. +++...........
T Consensus        14 ~~i~~~~~d~~~-g~l~~~~~~~~~~~~~~~~~a~s--------pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A           14 GAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFD--------HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             CEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEEC--------TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             CcEEEEEEECCC-CCEEEeeEEccCCCCCCcEEEEC--------CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            578887764  4 6555444332 334578899999        889999999888 99999997 55443222211112


Q ss_pred             ceeeeEeeecCCe--EEecC-------------CceeEEEEEec---------c----ccccceEEEEecCCCCCCCCCc
Q 048511           82 EVISLASYIEGPV--LVAGS-------------SSYQVSVESLL---------I----GHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        82 ~~~~~~~~~~~~~--l~~~~-------------~~~~~~~~~~~---------~----~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                      ....++++|+|+.  ++++.             .++.+.++..-         .    .+...+.+++|+      ++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s------pdG~  157 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD------PTET  157 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC------TTSS
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC------CCCC
Confidence            3556889999984  44443             34445444321         1    134568899999      7888


Q ss_pred             ccCCCceeEEee-cCCeEEEEecc-CCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEccc--Cc
Q 048511          134 SCQQPSSILSAS-MDKTMMIWQPE-KTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVG--VD  208 (351)
Q Consensus       134 ~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~--~~  208 (351)
                      +      |+++. .++.|++||+. +  ++......+ ....+...+..++|+|+|+++++++. ++.|.+|++..  ++
T Consensus       158 ~------l~~~~~~~~~v~~~~~~~~--g~~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  228 (365)
T 1jof_A          158 Y------LYSADLTANKLWTHRKLAS--GEVELVGSV-DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             E------EEEEETTTTEEEEEEECTT--SCEEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             E------EEEEcCCCCEEEEEEECCC--CCEEEeeeE-ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence            7      77665 46899999998 5  443221111 11112456899999999999988775 68999998753  32


Q ss_pred             ccC-cccccccc----cccc------cEEEEE-eecCCCEEEEEeCC-C-----cEEEEcCC-CccccccCccceEEec-
Q 048511          209 IDN-WQPQKVPS----GHFA------AVMDIS-WSRSSDYLLSVSHD-Q-----TTRVFAPW-KNVASLMGENSWHEVA-  268 (351)
Q Consensus       209 ~~~-~~~~~~~~----~~~~------~v~~v~-~sp~~~~l~s~~~d-g-----~i~vwd~~-~~~~~~~~~~~~~~~~-  268 (351)
                      ... ...+..+.    +|..      .+..++ |+|+|++|+++..+ .     .|.+|++. +++        ...+. 
T Consensus       229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--------~~~~~~  300 (365)
T 1jof_A          229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--------IEKQLF  300 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--------EEEEEE
T ss_pred             EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--------EEEeee
Confidence            100 00111221    2232      588999 99999998776543 2     89999986 333        11111 


Q ss_pred             cccccccceeEEEEeeeC--CCcEEEEecC-CCeEEEEecCchh
Q 048511          269 RPQVHGHDINCVTIIQGK--GNHRFVSGAD-EKVARVFEAPLSF  309 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~--~~~~l~s~~~-dg~v~vw~~~~~~  309 (351)
                      ....+...+..++|+| .  ++++|++++. ++.|++|+++...
T Consensus       301 ~~~~~~~~~~~~a~sp-~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          301 LSPTPTSGGHSNAVSP-CPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEECSSCCTTCCCEEE-CTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eeecCCCCcccceecC-CCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            1222344567889998 2  3788887775 5899999987553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=5.6e-18  Score=145.91  Aligned_cols=230  Identities=11%  Similarity=0.054  Sum_probs=155.8

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeecc----
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQST----   78 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~----   78 (351)
                      .++.|++|++.. ++...+..+..|...+..++|+        +++++|++++ .++.|.+|++............    
T Consensus        61 ~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~s--------pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~  131 (347)
T 3hfq_A           61 DEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVD--------EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG  131 (347)
T ss_dssp             TEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEE--------TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC
T ss_pred             CCceEEEEEecC-CcEEEeeeeecCCCCCEEEEEC--------CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC
Confidence            368999999987 7766777777788899999999        8899888887 7899999999643222211111    


Q ss_pred             -------cccceeeeEeeecCCeEEecCCceeEEEEEec-----------ccc-ccceEEEEecCCCCCCCCCcccCCCc
Q 048511           79 -------YRKEVISLASYIEGPVLVAGSSSYQVSVESLL-----------IGH-EDWVYSVQWEPPSTAPSDGVSCQQPS  139 (351)
Q Consensus        79 -------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~  139 (351)
                             ....+..++++|+|+++++...+..+.++..-           ..+ ...+..++|+      +++++     
T Consensus       132 ~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s------pdg~~-----  200 (347)
T 3hfq_A          132 HGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS------PDGQY-----  200 (347)
T ss_dssp             CCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC------TTSSE-----
T ss_pred             CCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC------CCCCE-----
Confidence                   01235679999999966655555555554432           111 2256778999      78885     


Q ss_pred             eeEEeecCCeEEEEeccCCCcceEEEEEeccccc---cccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccc
Q 048511          140 SILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH---SALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      ++++...++.|.+|++....+.............   ....+..++|+|+|++|+++ ..++.|.+|++....  ....+
T Consensus       201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--~~~~~  278 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--HLTLI  278 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG--CEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC--cEEEe
Confidence            0444567899999999853344322222111111   11358899999999988554 458999999996321  12344


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeC-CCcEEEEc--CCCcc
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFA--PWKNV  255 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd--~~~~~  255 (351)
                      ..+..+...+..++|+|+|++|++++. ++.|.+|+  ..+++
T Consensus       279 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          279 QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            555555667889999999998888775 48999994  44454

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=4.3e-19  Score=152.74  Aligned_cols=233  Identities=11%  Similarity=-0.002  Sum_probs=155.4

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeeccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      ++.+++|++||..+ ++  .+..+..+. ..+..++|+        ++++++ +++..++.|.+||+.+++.........
T Consensus        17 ~~~~~~v~~~d~~~-~~--~~~~~~~~~~~~~~~~~~s--------~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~   85 (349)
T 1jmx_B           17 TNYPNNLHVVDVAS-DT--VYKSCVMPDKFGPGTAMMA--------PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   85 (349)
T ss_dssp             EETTTEEEEEETTT-TE--EEEEEECSSCCSSCEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             eCCCCeEEEEECCC-Cc--EEEEEecCCCCCCceeEEC--------CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence            46789999999998 64  344554332 257899999        788765 455678999999998765443222100


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC------------
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD------------  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------------  147 (351)
                      .                             ...+...+..++|+      ++++.      |++++.+            
T Consensus        86 ~-----------------------------~~~~~~~~~~~~~s------pdg~~------l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           86 V-----------------------------PGEVGRSMYSFAIS------PDGKE------VYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             S-----------------------------TTEEEECSSCEEEC------TTSSE------EEEEEEEEEECSSCEEECC
T ss_pred             c-----------------------------cccccccccceEEC------CCCCE------EEEEcccccccccccccCC
Confidence            0                             00002236678899      78888      8888765            


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-------
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-------  220 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-------  220 (351)
                      +.|.+||+.+  +.....+...   .+...+.+++|+|+++ +++++  +.|.+||+.+++..     ..+..       
T Consensus       125 ~~i~~~d~~~--~~~~~~~~~~---~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~-----~~~~~~~~~~~~  191 (349)
T 1jmx_B          125 PRLEVFSTAD--GLEAKPVRTF---PMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT-----VALPLRNWNRKG  191 (349)
T ss_dssp             CEEEEEEGGG--GGGBCCSEEE---ECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE-----EEECSTTCCCTT
T ss_pred             CeEEEEECCC--ccccceeeec---cCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee-----ccccccccCCcc
Confidence            8999999987  3322221111   1223578899999999 66553  44999999776421     11110       


Q ss_pred             -------------------------------------------------------------ccccEEEEEeec-CCCEEE
Q 048511          221 -------------------------------------------------------------HFAAVMDISWSR-SSDYLL  238 (351)
Q Consensus       221 -------------------------------------------------------------~~~~v~~v~~sp-~~~~l~  238 (351)
                                                                                   +...+..++|+| ++++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence                                                                         112456778889 999988


Q ss_pred             EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          239 SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      ++  ++.|.+||+.+++          .+..+. ....+.+++|++  ++++|++++.++.|++||+. ++.+..+.
T Consensus       272 ~~--~~~v~~~d~~~~~----------~~~~~~-~~~~~~~~~~s~--dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          272 GV--LNRLAKYDLKQRK----------LIKAAN-LDHTYYCVAFDK--KGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EE--ESEEEEEETTTTE----------EEEEEE-CSSCCCEEEECS--SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EE--cCeEEEEECccCe----------EEEEEc-CCCCccceEECC--CCCEEEEecCCCeEEEEeccccceeeeee
Confidence            88  8899999998876          222221 223478999999  88888888889999999986 55555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=6.5e-19  Score=147.67  Aligned_cols=219  Identities=14%  Similarity=0.031  Sum_probs=154.8

Q ss_pred             EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc---------cc-ccceEEEEec
Q 048511           54 SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI---------GH-EDWVYSVQWE  123 (351)
Q Consensus        54 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~h-~~~v~~l~~~  123 (351)
                      +++.|++|++||+.+++.....  .+...+.++.|+|+++.++++. +..+.++..-.         .+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            3567899999999887654322  2356788999999999988875 44555544322         33 3567889999


Q ss_pred             CCCCCCCCCcccCCCceeEEee--cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE-EEeeCCeEE
Q 048511          124 PPSTAPSDGVSCQQPSSILSAS--MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-AHGYGGAFH  200 (351)
Q Consensus       124 p~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~dg~i~  200 (351)
                            ++++.      |++++  .++...||.+....+. ...+.      ....+..++|+|++++|+ ++..++.+.
T Consensus        94 ------pdg~~------l~~~~~~~~~~~~l~~~~~~~~~-~~~~~------~~~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           94 ------PDGAL------YAISDKVEFGKSAIYLLPSTGGT-PRLMT------KNLPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             ------TTSSE------EEEEECTTTSSCEEEEEETTCCC-CEECC------SSSSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ------CCCCE------EEEEEeCCCCcceEEEEECCCCc-eEEee------cCCCccceEECCCCCEEEEEECCCCceE
Confidence                  78888      99888  4455666665432233 22221      223488899999999887 778899999


Q ss_pred             EEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      +|+++...    .....+..+...+.+++|+|++++|+.++ .++.++||++.....         .+..+..|...+.+
T Consensus       155 l~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          155 IYSMDIDS----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---------SVERITDSAYGDWF  221 (297)
T ss_dssp             EEEEETTT----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---------CEEECCCCSEEEEE
T ss_pred             EEEEECCC----CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---------CcEEEecCCcccCC
Confidence            99975432    22445566778899999999999887666 589999999863221         23334456677899


Q ss_pred             EEEeeeCCCcEEEEecCC-----------CeEEEEecCchh
Q 048511          280 VTIIQGKGNHRFVSGADE-----------KVARVFEAPLSF  309 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~d-----------g~v~vw~~~~~~  309 (351)
                      ++|+|  ++.+|++++.+           +.|++||+.+..
T Consensus       222 ~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          222 PHPSP--SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             EEECT--TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred             eEECC--CCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence            99999  89999888765           579999987443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=4.1e-19  Score=167.51  Aligned_cols=260  Identities=9%  Similarity=-0.007  Sum_probs=170.0

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecC-----------------CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHT-----------------DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~-----------------~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      +.|+ | +||+.+ ++.. ...+..|.                 ..|.+++|+        ++ +.++.+. |+.|++||
T Consensus        42 ~~~~-i-~~d~~t-g~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s--------pd-~~~~~~~-~~~i~~~d  107 (706)
T 2z3z_A           42 EGDD-L-VFNKAN-GKSA-QTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDA--------GR-GLVVLFT-QGGLVGFD  107 (706)
T ss_dssp             ETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEET--------TT-TEEEEEE-TTEEEEEE
T ss_pred             eCCc-E-EEECCC-CcEe-eEEeechhHhhhhccchhccccccccCceeEEEC--------CC-CeEEEEE-CCEEEEEE
Confidence            3456 8 999998 6430 02223332                 569999999        77 5555443 69999999


Q ss_pred             cCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc-----c--------cccc--------------eE
Q 048511           66 LALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI-----G--------HEDW--------------VY  118 (351)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~--------h~~~--------------v~  118 (351)
                      +.+++......  ....+..+.|+|+|+.++.. .+..+.++..-.     +        +...              +.
T Consensus       108 ~~~~~~~~l~~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~  184 (706)
T 2z3z_A          108 MLARKVTYLFD--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK  184 (706)
T ss_dssp             TTTTEEEEEEC--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred             CCCCceEEccC--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc
Confidence            98775433222  23457788999999988875 445555554322     1        2222              47


Q ss_pred             EEEecCCCCCCCCCcccCCCceeEEee---------------------------------cCCeEEEEeccCCCcceEEE
Q 048511          119 SVQWEPPSTAPSDGVSCQQPSSILSAS---------------------------------MDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus       119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~~~~~  165 (351)
                      ++.|+      ||++.      |++++                                 .+..|++||+.+  +.....
T Consensus       185 ~~~~S------pDg~~------la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~  250 (706)
T 2z3z_A          185 GTFWS------PKGSC------LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYL  250 (706)
T ss_dssp             SEEEC------TTSSE------EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEEC
T ss_pred             eEEEC------CCCCE------EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEee
Confidence            89999      79998      99887                                 446799999987  543222


Q ss_pred             EEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccc--cccc---cEEEEEeec--C
Q 048511          166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPS--GHFA---AVMDISWSR--S  233 (351)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~--~~~~---~v~~v~~sp--~  233 (351)
                      .   ....+...+.+++|+|+++.|++++.++     .|++||+.+++     ....+.  .+..   .+..++|+|  +
T Consensus       251 ~---~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          251 Q---TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----FVRTLFVETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             C---CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----EEEEEEEEECSSCCCCCSCCEECTTCS
T ss_pred             c---cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----eeeEEEEccCCCeECccCCceeecCCC
Confidence            1   1124556789999999999999988776     89999998862     111111  1222   246789999  9


Q ss_pred             CCEEEEEeCCCcEEEEcCC-CccccccCccceEEeccccccccceeE-EEEeeeCCCcEEE-EecCCC----eEEEEecC
Q 048511          234 SDYLLSVSHDQTTRVFAPW-KNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFV-SGADEK----VARVFEAP  306 (351)
Q Consensus       234 ~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~-s~~~dg----~v~vw~~~  306 (351)
                      |++|++++.|+.++||++. .+.          .+..+..+...+.. ++|+|  +++.|+ +++.++    .|..|++.
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~~~----------~~~~l~~~~~~v~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTTGR----------LIRQVTKGEWEVTNFAGFDP--KGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSC----------EEEECCCSSSCEEEEEEECT--TSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             CEEEEEEccCCccEEEEEECCCC----------EEEecCCCCeEEEeeeEEcC--CCCEEEEEecCCCCceEEEEEEEcC
Confidence            9999999999999999876 332          23334455566766 79999  787665 444554    67777766


Q ss_pred             chhhhce
Q 048511          307 LSFLKTL  313 (351)
Q Consensus       307 ~~~~~~~  313 (351)
                      +...+.+
T Consensus       391 ~~~~~~l  397 (706)
T 2z3z_A          391 GGKTKDL  397 (706)
T ss_dssp             CCCCEES
T ss_pred             CCCceec
Confidence            4334333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1e-18  Score=171.56  Aligned_cols=256  Identities=9%  Similarity=0.038  Sum_probs=182.9

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC-cccceeeccccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR-GSSANTQSTYRKEVI   84 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~   84 (351)
                      ...++|.....++   ...+.+|...+.++.|+        ++ .++++++.|+++++|.+... .....+...  ....
T Consensus       183 ~~~~lw~~~~~~~---~~~l~~~~~~v~~~~~s--------~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~--~~~~  248 (1045)
T 1k32_A          183 TRGKIWIEVNSGA---FKKIVDMSTHVSSPVIV--------GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF--TDYY  248 (1045)
T ss_dssp             TCCEEEEEEETTE---EEEEECCSSCCEEEEEE--------TT-EEEEEECTTSSCEEEEEETTSCSCEECCCC--CSSC
T ss_pred             CcCCEEEECCCCC---eEECcCCCCcccceEEe--------CC-EEEEEEeccCceEEEEEeCCCCcceEecCC--CCcc
Confidence            3456665443132   23458899999999999        66 67778888999999987642 222222211  2345


Q ss_pred             eeEeeecCCeEEecCCceeEEEEE-------eccc-----------cccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVES-------LLIG-----------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~-----------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ...|+|+|+.++.+. ++.+.++.       .+.+           |...+.+++|+|     |+++.      |++++ 
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~-----pdG~~------la~~~-  315 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSP-----LDGDL------IAFVS-  315 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEE-----CGGGC------EEEEE-
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecC-----CCCCE------EEEEE-
Confidence            668999999887763 44443332       2222           334688999993     37777      88877 


Q ss_pred             CCeEEEEeccCCCcceEEEEEecccccccc-ceEEEEEcCCCCEEEEEeeCCeEE-EEEcccCcccCccccccccccccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSAL-GFYGGHWSPDGRSILAHGYGGAFH-LWRNVGVDIDNWQPQKVPSGHFAA  224 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~i~-~~d~~~~~~~~~~~~~~~~~~~~~  224 (351)
                      ++.|.+|++..  +.... +     ..+.. .+..++|+ +++.|+.++.++.+. +||+.++.      ...+..|...
T Consensus       316 ~~~i~~~~~~~--~~~~~-~-----~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~~~l~~~~~~  380 (1045)
T 1k32_A          316 RGQAFIQDVSG--TYVLK-V-----PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGN  380 (1045)
T ss_dssp             TTEEEEECTTS--SBEEE-C-----SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------EEECCCCCCS
T ss_pred             cCEEEEEcCCC--CceEE-c-----cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------ceEecCCccc
Confidence            88999999987  44322 2     24455 78999999 999999988888888 99988753      2333467788


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC-------
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE-------  297 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-------  297 (351)
                      +..++|+|+|++|++++.++.|++||+.+++          .......|...+.+++|+|  |+++|++++.+       
T Consensus       381 ~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~----------~~~~~~~~~~~v~~~~~Sp--DG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          381 VFAMGVDRNGKFAVVANDRFEIMTVDLETGK----------PTVIERSREAMITDFTISD--NSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCCEEECT--TSCEEEEEEEECSSTTCS
T ss_pred             eeeeEECCCCCEEEEECCCCeEEEEECCCCc----------eEEeccCCCCCccceEECC--CCCeEEEEecCccccccC
Confidence            9999999999999999999999999998876          2222335777789999999  99999888764       


Q ss_pred             ---CeEEEEecCchhhhceee
Q 048511          298 ---KVARVFEAPLSFLKTLNH  315 (351)
Q Consensus       298 ---g~v~vw~~~~~~~~~~~~  315 (351)
                         +.|++||+.+..+..+..
T Consensus       449 ~~~~~i~l~d~~~g~~~~l~~  469 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRKIFAATT  469 (1045)
T ss_dssp             CCEEEEEEEETTTTEEEECSC
T ss_pred             CCCCeEEEEECCCCcEEEeeC
Confidence               499999987433444433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=6e-19  Score=173.15  Aligned_cols=252  Identities=8%  Similarity=-0.012  Sum_probs=182.8

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST---   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---   78 (351)
                      ++.|++++||.+...+.  ....+..|. .+..++|+        ++|++|+++. ++.|.+|++... .+..+...   
T Consensus       220 ~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~S--------pDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~  286 (1045)
T 1k32_A          220 TDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLN--------TDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLE  286 (1045)
T ss_dssp             ECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEE--------ESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCC
T ss_pred             EeccCceEEEEEeCCCC--cceEecCCC-CcceeeEc--------CCCCEEEEEe-CCEEEEecCCce-EeeeeccCccc
Confidence            34578888998664221  223444554 46778999        8899898874 899999998433 22222110   


Q ss_pred             -------cccceeeeEee-ecCCeEEecCCceeEEEE-------Eecccccc-ceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           79 -------YRKEVISLASY-IEGPVLVAGSSSYQVSVE-------SLLIGHED-WVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        79 -------~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~-------~~~~~h~~-~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                             +...+..++|+ |+|+.++.+. .+.+.++       ..+..|.. .+..++|+       +++.      |+
T Consensus       287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-------dg~~------l~  352 (1045)
T 1k32_A          287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-------TKVA------FI  352 (1045)
T ss_dssp             BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-------SEEE------EE
T ss_pred             ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-------CCCe------EE
Confidence                   12257789999 9999888765 3333322       22455666 78888887       4556      88


Q ss_pred             EeecCCeEE-EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          143 SASMDKTMM-IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       143 s~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      +++.++.+. +||+..  +... .+     ..+...+..++|+|++++|++++.++.|++||+.+++     ....+.+|
T Consensus       353 ~~s~~~~l~~~~d~~~--~~~~-~l-----~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-----~~~~~~~~  419 (1045)
T 1k32_A          353 HGTREGDFLGIYDYRT--GKAE-KF-----EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-----PTVIERSR  419 (1045)
T ss_dssp             EEETTEEEEEEEETTT--CCEE-EC-----CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECS
T ss_pred             EEECCCceEEEEECCC--CCce-Ee-----cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-----eEEeccCC
Confidence            888888888 889876  4322 11     1456779999999999999999999999999998873     34445578


Q ss_pred             cccEEEEEeecCCCEEEEEeCCC----------cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQ----------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                      ...+..++|+|||++|++++.++          .|++||+.+++           ...+..|...+..++|+|  ++++|
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-----------~~~l~~~~~~~~~~~~sp--dG~~l  486 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----------IFAATTENSHDYAPAFDA--DSKNL  486 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----------EEECSCSSSBEEEEEECT--TSCEE
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-----------EEEeeCCCcccCCceEcC--CCCEE
Confidence            88899999999999998887644          89999997764           223345666788899999  99999


Q ss_pred             EEecCCCeEEEEecC
Q 048511          292 VSGADEKVARVFEAP  306 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~  306 (351)
                      +.++.++..++|+..
T Consensus       487 ~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          487 YYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEEESCCCCCEECSS
T ss_pred             EEEecccCCcCcchh
Confidence            999998888888754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.81  E-value=4.2e-18  Score=145.58  Aligned_cols=227  Identities=7%  Similarity=-0.014  Sum_probs=153.7

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC-CceeEEEEEe---------ccccccce
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS-SSYQVSVESL---------LIGHEDWV  117 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~---------~~~h~~~v  117 (351)
                      .+..+++++.++.|.+||+.+++........ .... .++++++++.++++. .+..+..+..         +..+..+.
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            4556888889999999999988776555433 3344 899999999666544 3555544432         23334444


Q ss_pred             EEEEecCCCCCCCCCcccCCCceeEEeecCC---eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          118 YSVQWEPPSTAPSDGVSCQQPSSILSASMDK---TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       118 ~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      .+++|+      +++++      ++++..++   .|.+||+..  ++.+..+.      ......+++|+|+++++++++
T Consensus        87 ~~~~~s------~dg~~------l~~~~~~~~~~~i~v~d~~~--~~~~~~~~------~~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           87 ADVDIT------PDDQF------AVTVTGLNHPFNMQSYSFLK--NKFISTIP------IPYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             CCEEEC------TTSSE------EEECCCSSSSCEEEEEETTT--TEEEEEEE------CCTTEEEEEECTTSSCEEEEE
T ss_pred             cceEEC------CCCCE------EEEecCCCCcccEEEEECCC--CCeEEEEE------CCCCccceEECCCCCEEEEEe
Confidence            448999      78888      88655553   899999988  66666554      223468999999998766665


Q ss_pred             e-CCe-EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEE-EeCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          195 Y-GGA-FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLS-VSHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       195 ~-dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      . ++. |.+|++.............+ .....+..++|+|+|++++. +..++.|++||+.+++.       ...+..+.
T Consensus       147 ~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-------~~~~~~~~  218 (331)
T 3u4y_A          147 RSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-------ITLLNAVG  218 (331)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-------CEEEEEEE
T ss_pred             cCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-------cceeeecc
Confidence            4 477 99999875321000001111 23455789999999996654 45689999999987762       01122222


Q ss_pred             ccccceeEEEEeeeCCCcEEE-EecCCCeEEEEecCc
Q 048511          272 VHGHDINCVTIIQGKGNHRFV-SGADEKVARVFEAPL  307 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~-s~~~dg~v~vw~~~~  307 (351)
                       ....+..++|+|  ++++++ +...++.|.+||+..
T Consensus       219 -~~~~~~~~~~sp--dg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          219 -TNNLPGTIVVSR--DGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             -CSSCCCCEEECT--TSSEEEEECSSEEEEEEEETTT
T ss_pred             -CCCCCceEEECC--CCCEEEEEEcCCCEEEEEECCC
Confidence             235578999999  888665 455688999999873

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=6.6e-19  Score=166.56  Aligned_cols=239  Identities=10%  Similarity=0.086  Sum_probs=159.8

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceeeeEeeecCCeEEecCCc-------
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVISLASYIEGPVLVAGSSS-------  101 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~-------  101 (351)
                      .+.+++|+        ++|+++++ +.||+|++||+.+++..........  ..+..++|+|+|+.++.+..+       
T Consensus        18 ~~~~~~~s--------pdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           18 HDPEAKWI--------SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCCCCBS--------SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             cccccEEc--------CCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence            46788999        88887776 7899999999998876544332211  137899999999998886543       


Q ss_pred             --eeEEEEEe-------c---cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          102 --YQVSVESL-------L---IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       102 --~~~~~~~~-------~---~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                        ..+.++..       +   .+|...+..++|+      |||+.      |+.++. +.|++||+..  +.........
T Consensus        89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S------PdG~~------la~~~~-~~i~~~~~~~--g~~~~~~~~~  153 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG------PKGQQ------LIFIFE-NNIYYCAHVG--KQAIRVVSTG  153 (723)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC------SSTTC------EEEEET-TEEEEESSSS--SCCEEEECCC
T ss_pred             ceeeEEEEECCCCceEeccCCccccccccccEEC------CCCCE------EEEEEC-CeEEEEECCC--CceEEEecCC
Confidence              34444432       1   2344457889999      79988      998876 7999999987  5443332210


Q ss_pred             ccc----cc---------ccceEEEEEcCCCCEEEEEeeCC----------------------------------eEEEE
Q 048511          170 ELS----HS---------ALGFYGGHWSPDGRSILAHGYGG----------------------------------AFHLW  202 (351)
Q Consensus       170 ~~~----~~---------~~~i~~i~~~~~~~~l~~~~~dg----------------------------------~i~~~  202 (351)
                      ...    ++         ...+.+++|+|||+.|++++.++                                  .|++|
T Consensus       154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~  233 (723)
T 1xfd_A          154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI  233 (723)
T ss_dssp             BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred             CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence            000    00         01237899999999999987653                                  79999


Q ss_pred             EcccCcccCccccccccc------ccccEEEEEeecCCCEEEEEeC----CCcEEEEcCCCccccccCccceEEeccccc
Q 048511          203 RNVGVDIDNWQPQKVPSG------HFAAVMDISWSRSSDYLLSVSH----DQTTRVFAPWKNVASLMGENSWHEVARPQV  272 (351)
Q Consensus       203 d~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      |+.+++     ....+..      +...+..++|+|||++|++.+.    +..|++||+.+++..       ....  ..
T Consensus       234 d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~--~~  299 (723)
T 1xfd_A          234 GLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-------KKHE--DE  299 (723)
T ss_dssp             ESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-------EEEE--EE
T ss_pred             ECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-------EEEE--ec
Confidence            998764     2233333      3667999999999998876643    367999999877621       1111  11


Q ss_pred             cccce----eEEEEeeeCCCcEEEE--ecCCC------eEEEEe-cCchh
Q 048511          273 HGHDI----NCVTIIQGKGNHRFVS--GADEK------VARVFE-APLSF  309 (351)
Q Consensus       273 ~~~~i----~~~~~~~~~~~~~l~s--~~~dg------~v~vw~-~~~~~  309 (351)
                      +...+    ..++|+|  |++.|+.  +..++      .|.+|| ..+..
T Consensus       300 ~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSK--DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             CSSCCCCCCCCCEECT--TSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             cCCEEeccCCCceEcC--CCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            22222    3789999  8886664  45677      577788 44433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=4.7e-18  Score=156.76  Aligned_cols=242  Identities=9%  Similarity=0.039  Sum_probs=166.7

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeC---CCcEEEEecCC--Ccccceeec
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQ---DKVIRIWKLAL--RGSSANTQS   77 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~---dg~i~iwd~~~--~~~~~~~~~   77 (351)
                      .||+++||+++. ++.   ..+..|. ..|..+.|+        |+ +++++++.   +...++|.+..  .........
T Consensus        42 ~~g~~~lw~~~~-g~~---~~lt~~~~~~~~~~~~s--------pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~  108 (582)
T 3o4h_A           42 SEGSVNAYLYDG-GET---VKLNREPINSVLDPHYG--------VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  108 (582)
T ss_dssp             ETTEEEEEEEET-TEE---EECCSSCCSEECEECTT--------CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT
T ss_pred             cCCceeEEEEcC-CCc---EeeecccccccccccCC--------CC-eEEEEeccCCCCcceEEEEEeccCCCccccccC
Confidence            389999999976 633   3444454 689999999        77 78887775   55667776654  222222211


Q ss_pred             ccccceeeeEeeecCCe--EEecCCceeEEEEEe-------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC-
Q 048511           78 TYRKEVISLASYIEGPV--LVAGSSSYQVSVESL-------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-  147 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~-------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-  147 (351)
                        .......+++++|+.  ++.+..+... ++..       +..+..  .+++|+      |||+.      |++++.+ 
T Consensus       109 --~~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~--~~~~~s------pDG~~------la~~~~~~  171 (582)
T 3o4h_A          109 --VKPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG--FGFVSD------IRGDL------IAGLGFFG  171 (582)
T ss_dssp             --SCSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS--CEEEEE------EETTE------EEEEEEEE
T ss_pred             --CCCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC--ceEEEC------CCCCE------EEEEEEcC
Confidence              123335688888864  3333333222 3322       111222  688999      79999      9988877 


Q ss_pred             ---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC--eEEEEEcccCcccCccccccccccc
Q 048511          148 ---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHF  222 (351)
Q Consensus       148 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~  222 (351)
                         +.|++||+.+  +... .+.     .+...+..++|+|||+.|+++..++  .|++||+.+++     .. .+..|.
T Consensus       172 ~~~~~i~~~d~~~--g~~~-~l~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~-----~~-~~~~~~  237 (582)
T 3o4h_A          172 GGRVSLFTSNLSS--GGLR-VFD-----SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS-----VE-DLELPS  237 (582)
T ss_dssp             TTEEEEEEEETTT--CCCE-EEC-----CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC-----EE-ECCCSC
T ss_pred             CCCeEEEEEcCCC--CCce-Eee-----cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc-----EE-EccCCC
Confidence               7899999987  4433 222     5667789999999999999888888  89999998874     23 556676


Q ss_pred             ccEEEEE--------eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe
Q 048511          223 AAVMDIS--------WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       223 ~~v~~v~--------~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      ..+..++        |+|||.++++++.|+.+++|++  ++          ....   +...+.+++|+   ++.+++++
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~----------~~~~---~~~~v~~~~~s---dg~~l~~~  299 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE----------RVEA---PQGNHGRVVLW---RGKLVTSH  299 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE----------EECC---CSSEEEEEEEE---TTEEEEEE
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC----------eecc---CCCceEEEEec---CCEEEEEE
Confidence            6666667        9999988899999999999999  43          2222   23458888887   47888887


Q ss_pred             cCCC---eEEEEecCc
Q 048511          295 ADEK---VARVFEAPL  307 (351)
Q Consensus       295 ~~dg---~v~vw~~~~  307 (351)
                      +.+.   .+.+|+..+
T Consensus       300 s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          300 TSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EETTEEEEEEEETTCC
T ss_pred             cCCCCCCeEEEEcCCC
Confidence            7764   466777655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=3e-16  Score=135.82  Aligned_cols=242  Identities=12%  Similarity=0.137  Sum_probs=155.5

Q ss_pred             CceEEEEEccCC-CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccceeec---c-
Q 048511            5 DNKIHLYRGQRT-GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANTQS---T-   78 (351)
Q Consensus         5 dg~i~vw~~~~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~---~-   78 (351)
                      ++.|.+|++... +++..+.....+......+++.          +++|++++ .++.|.+|++.....+.....   . 
T Consensus        74 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~d----------g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  143 (361)
T 3scy_A           74 QAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTN----------GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK  143 (361)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEEC----------SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred             CCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEEC----------CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence            489999988763 5566666666555666666664          66666665 688999999976543322111   0 


Q ss_pred             ---------cccceeeeEeeecCCeEEecC-CceeEEEEEec---------------------cccccceEEEEecCCCC
Q 048511           79 ---------YRKEVISLASYIEGPVLVAGS-SSYQVSVESLL---------------------IGHEDWVYSVQWEPPST  127 (351)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~---------------------~~h~~~v~~l~~~p~~~  127 (351)
                               .......++++|+|+.+++.+ .+..+.++..-                     ..+...+..++|+    
T Consensus       144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s----  219 (361)
T 3scy_A          144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN----  219 (361)
T ss_dssp             CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC----
T ss_pred             CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc----
Confidence                     012236789999999665543 34444444221                     1223457789999    


Q ss_pred             CCCCCcccCCCceeEEee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEc
Q 048511          128 APSDGVSCQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRN  204 (351)
Q Consensus       128 ~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~  204 (351)
                        +++++      +++++ .++.|.+||+..  +.......+.....+......++|+|++++|+++..+  +.|.+|++
T Consensus       220 --pdg~~------l~v~~~~~~~v~v~~~~~--g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          220 --SDGKF------AYLINEIGGTVIAFRYAD--GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             --TTSSE------EEEEETTTCEEEEEEEET--TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             --CCCCE------EEEEcCCCCeEEEEEecC--CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence              78887      76666 689999999986  5443322222223334457899999999999777765  89999999


Q ss_pred             c--cCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcC--CCccccccCccceEEeccccccccceeE
Q 048511          205 V--GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAP--WKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       205 ~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      .  ++..   ..+..+.. ...+..++|+|+|++|++++ .++.|.+|++  .+++.        ..+. ...+...+.|
T Consensus       290 ~~~~g~~---~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~--------~~~~-~~~~~~~p~~  356 (361)
T 3scy_A          290 DETNGTL---TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL--------TDIK-KDIKVDKPVC  356 (361)
T ss_dssp             CTTTCCE---EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE--------EECS-CCEECSSEEE
T ss_pred             cCCCCcE---EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE--------eecc-eeeeCCCCeE
Confidence            6  3321   23333333 45678999999999888877 5789999655  44441        1121 1123345888


Q ss_pred             EEEe
Q 048511          280 VTII  283 (351)
Q Consensus       280 ~~~~  283 (351)
                      +.|.
T Consensus       357 v~~~  360 (361)
T 3scy_A          357 LKFV  360 (361)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=3.7e-18  Score=161.35  Aligned_cols=258  Identities=14%  Similarity=0.110  Sum_probs=168.9

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCC---ceeEEEeeCCcccCCCCCccEEEEeeC---------CCcEEEEecCCCc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTD---WIRSLDFSLPVCTSGEAISILLVSSSQ---------DKVIRIWKLALRG   70 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~~~~~~~~l~t~~~---------dg~i~iwd~~~~~   70 (351)
                      +.|++|++||+.+ ++.  ...+.+|..   .|.+++|+        |+|++|++++.         |+.|++||+.+++
T Consensus        33 ~~d~~i~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~S--------pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~  101 (719)
T 1z68_A           33 SADNNIVLYNIET-GQS--YTILSNRTMKSVNASNYGLS--------PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE  101 (719)
T ss_dssp             CTTSCEEEEESSS-CCE--EEEECHHHHHTTTCSEEEEC--------TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             cCCCCEEEEEcCC-CcE--EEEEccccccccceeeEEEC--------CCCCeEEEEecCceeEEeecceEEEEEECCCCc
Confidence            3589999999998 743  334444443   48999999        89999998876         7899999999876


Q ss_pred             ccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec---------cccccce-----------------EEEEecC
Q 048511           71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL---------IGHEDWV-----------------YSVQWEP  124 (351)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~h~~~v-----------------~~l~~~p  124 (351)
                      .......  ...+..++|+|+|+.|+.+. +..+.++..-         .++...|                 .++.|+ 
T Consensus       102 ~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS-  177 (719)
T 1z68_A          102 FVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS-  177 (719)
T ss_dssp             ECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC-
T ss_pred             cccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC-
Confidence            5210111  23577899999999988864 3455444321         2222222                 489999 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCC----------------------------------eEEEEeccCCCcceEEEEEe--
Q 048511          125 PSTAPSDGVSCQQPSSILSASMDK----------------------------------TMMIWQPEKTTGIWMNVVTV--  168 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~~~~~~~~--  168 (351)
                           |||+.      |++++.|.                                  .|++||+..  +.....+.+  
T Consensus       178 -----PDG~~------la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~  244 (719)
T 1z68_A          178 -----PNGKF------LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY--PAYVGPQEVPV  244 (719)
T ss_dssp             -----TTSSE------EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC--HHHHCCEECCC
T ss_pred             -----CCCCE------EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC--CCccceeEccC
Confidence                 79999      99988663                                  788999987  443201111  


Q ss_pred             -ccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEE----cccCcccCccccccc----ccccccEE-----EEEe
Q 048511          169 -GELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWR----NVGVDIDNWQPQKVP----SGHFAAVM-----DISW  230 (351)
Q Consensus       169 -~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d----~~~~~~~~~~~~~~~----~~~~~~v~-----~v~~  230 (351)
                       .....+...+..++|+||++++++....    ..|.+||    +.+++     +...+    ..|...+.     .+.|
T Consensus       245 ~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-----CPKTQEHIEESRTGWAGGFFVSTPVF  319 (719)
T ss_dssp             CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----CCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred             CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----eEEEEecccccCCceEccccCCccEE
Confidence             1122466778999999998777764433    2488888    66653     33334    35666666     7899


Q ss_pred             ecCCCEEEE--EeCCC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC----CCeEEE
Q 048511          231 SRSSDYLLS--VSHDQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD----EKVARV  302 (351)
Q Consensus       231 sp~~~~l~s--~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~v~v  302 (351)
                      +|+|+.|+.  ...++  .|.+||+..+..        ..+   ..+...+..+.+..  ++.+++++..    ++.+++
T Consensus       320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------~~l---t~~~~~v~~~~~~d--~~~i~~~~~~~~~~~~~~~l  386 (719)
T 1z68_A          320 SYDAISYYKIFSDKDGYKHIHYIKDTVENA--------IQI---TSGKWEAINIFRVT--QDSLFYSSNEFEEYPGRRNI  386 (719)
T ss_dssp             CTTSSCEEEEEECTTSCEEEEEESSCSTTC--------EEC---SCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEE
T ss_pred             CCCCCeEEEEEEccCCceEEEEEECCCCce--------Eec---ccCceEEEEEEEEe--CCEEEEEEecCCCCCceEEE
Confidence            999986554  44455  577778765541        122   23344466666654  4555555555    588899


Q ss_pred             EecC
Q 048511          303 FEAP  306 (351)
Q Consensus       303 w~~~  306 (351)
                      |.++
T Consensus       387 ~~~~  390 (719)
T 1z68_A          387 YRIS  390 (719)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=9.2e-18  Score=158.64  Aligned_cols=237  Identities=8%  Similarity=0.004  Sum_probs=157.0

Q ss_pred             EEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--cceeeeEeeecCCeEEecCC---------ce
Q 048511           34 SLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--KEVISLASYIEGPVLVAGSS---------SY  102 (351)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~---------~~  102 (351)
                      .++|+        +++.+++++ .|++|++||+.+++..........  ..+..++|+|+|+.|+.+..         +.
T Consensus        20 ~~~~s--------~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           20 FPNWI--------SGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCEES--------SSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccEEC--------CCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence            67899        788666554 699999999998875443332111  13788999999999988765         46


Q ss_pred             eEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          103 QVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       103 ~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      .+.++..-.+       ....+..++|+      |||+.      |+.+. ++.|++||+.+  +.......    .++.
T Consensus        91 ~i~~~d~~~g~~~~~~~l~~~~~~~~~S------PDG~~------la~~~-~~~i~~~~~~~--g~~~~l~~----~~~~  151 (719)
T 1z68_A           91 TYYIYDLSNGEFVRGNELPRPIQYLCWS------PVGSK------LAYVY-QNNIYLKQRPG--DPPFQITF----NGRE  151 (719)
T ss_dssp             EEEEEETTTTEECCSSCCCSSBCCEEEC------SSTTC------EEEEE-TTEEEEESSTT--SCCEECCC----CCBT
T ss_pred             EEEEEECCCCccccceecCcccccceEC------CCCCE------EEEEE-CCeEEEEeCCC--CCcEEEec----CCCc
Confidence            6666653222       22457889999      79998      88885 78999999987  44332111    1222


Q ss_pred             cce-----------------EEEEEcCCCCEEEEEeeCC----------------------------------eEEEEEc
Q 048511          176 LGF-----------------YGGHWSPDGRSILAHGYGG----------------------------------AFHLWRN  204 (351)
Q Consensus       176 ~~i-----------------~~i~~~~~~~~l~~~~~dg----------------------------------~i~~~d~  204 (351)
                      ..+                 .+++|+|||++|++++.|.                                  .|++||+
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            212                 4899999999999988652                                  7889999


Q ss_pred             ccCccc---CcccccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEc----CCCccccccCccceEEeccc---
Q 048511          205 VGVDID---NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFA----PWKNVASLMGENSWHEVARP---  270 (351)
Q Consensus       205 ~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~---  270 (351)
                      .+++..   .......+.+|...+..++|+||++++++....    ..|.+||    ..+++.          ....   
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~----------~~~~~~~  301 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC----------PKTQEHI  301 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC----------CGGGEEE
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce----------EEEEecc
Confidence            876420   000002345688889999999998877764432    2488899    666542          1122   


Q ss_pred             -ccccccee-----EEEEeeeCCCcEEE--EecCCC--eEEEEecCchhh
Q 048511          271 -QVHGHDIN-----CVTIIQGKGNHRFV--SGADEK--VARVFEAPLSFL  310 (351)
Q Consensus       271 -~~~~~~i~-----~~~~~~~~~~~~l~--s~~~dg--~v~vw~~~~~~~  310 (351)
                       ..|...+.     .++|+|  |++.|+  +...+|  .|.+|++.+...
T Consensus       302 ~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~g~~~l~~~~~~~~~~  349 (719)
T 1z68_A          302 EESRTGWAGGFFVSTPVFSY--DAISYYKIFSDKDGYKHIHYIKDTVENA  349 (719)
T ss_dssp             EECSSSCSSSSSCCCCEECT--TSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred             cccCCceEccccCCccEECC--CCCeEEEEEEccCCceEEEEEECCCCce
Confidence             24555555     789999  887544  344555  566677664333

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=3.8e-16  Score=133.44  Aligned_cols=244  Identities=11%  Similarity=0.028  Sum_probs=169.9

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCC------------------------CcEEEEecCCCcccceeeccccccee
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQD------------------------KVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      -+.+.+|+++        ++++++++...+                        ++|.+||..+++..............
T Consensus        23 l~~v~~va~d--------~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~   94 (329)
T 3fvz_A           23 PGQVSGVALD--------SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH   94 (329)
T ss_dssp             CSCEEEEEEC--------TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE
T ss_pred             cCCceEEEEC--------CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce
Confidence            4579999999        889999888777                        47999999877765443333334677


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEe---------c---------cccccceEEEEecCCCCCCCCCcccCCCceeEEee-
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESL---------L---------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-  145 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~---------~---------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-  145 (351)
                      .++++++|+++++......+..+..         +         .++......++++|     .++.+      +++.+ 
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~-----~~g~l------yv~d~~  163 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP-----STGAV------FVSDGY  163 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT-----TTCCE------EEEECS
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC-----CCCeE------EEEeCC
Confidence            8999999998887766665554432         1         23334688999993     26777      77776 


Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCccccccc-
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-  218 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-  218 (351)
                      .++.|++||..   +..+..+.....     ..+-.....++++|+ +.++++...++.|++||..+++     .+..+ 
T Consensus       164 ~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-----~~~~~~  235 (329)
T 3fvz_A          164 CNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE-----FVREIK  235 (329)
T ss_dssp             SCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----EEEEEC
T ss_pred             CCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-----EEEEEe
Confidence            68999999943   555554431110     112234789999998 6666777788999999998653     33333 


Q ss_pred             -ccccccEEEEEeec------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          219 -SGHFAAVMDISWSR------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       219 -~~~~~~v~~v~~sp------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                       ..+...+..++|+|      +++.+++...+..|++||..+++.       ...+.....+...+..+++++  ++.++
T Consensus       236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-------~~~~~~~~~~~~~p~~ia~~~--dG~ly  306 (329)
T 3fvz_A          236 HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-------IDVFKPVRKHFDMPHDIVASE--DGTVY  306 (329)
T ss_dssp             CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE-------EEEECCSSSCCSSEEEEEECT--TSEEE
T ss_pred             ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE-------EEEEcCCCCccCCeeEEEECC--CCCEE
Confidence             34556788999999      333333334456899999988762       222222235556689999999  88999


Q ss_pred             EEecCCCeEEEEecCch
Q 048511          292 VSGADEKVARVFEAPLS  308 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~~~  308 (351)
                      ++...++.|++|++.+.
T Consensus       307 vad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEESSSCCEEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCcc
Confidence            99999999999998753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=1.7e-16  Score=135.66  Aligned_cols=213  Identities=8%  Similarity=-0.025  Sum_probs=145.2

Q ss_pred             CCCceEEEEEccCCCceEEEEeeee---cCCceeEEEeeCCcccCCCCCccEEEEee------------CCCcEEEEecC
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKG---HTDWIRSLDFSLPVCTSGEAISILLVSSS------------QDKVIRIWKLA   67 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~~~~~~~~l~t~~------------~dg~i~iwd~~   67 (351)
                      ..++.|.+||+.+ ++......+..   |...+.+++|+        +++++|++++            .++.|.+||+.
T Consensus        53 ~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~s--------~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~  123 (337)
T 1pby_B           53 NKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALS--------PDGKTLAIYESPVRLELTHFEVQPTRVALYDAE  123 (337)
T ss_dssp             TTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEEC--------TTSSEEEEEEEEEEECSSCEEECCCEEEEEETT
T ss_pred             CCCCeEEEEECCC-CCeEeeEEcCCcccccccccceEEC--------CCCCEEEEEecccccccccccccCceEEEEECC
Confidence            4578999999988 64433222221   22367889999        8898888886            57999999998


Q ss_pred             CCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCc
Q 048511           68 LRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPS  139 (351)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~  139 (351)
                      +++.......  ...+..++++|+++.+++++  ..+.++..        +..+.. ...+.|+      +++..     
T Consensus       124 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~--~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s------~dg~~-----  187 (337)
T 1pby_B          124 TLSRRKAFEA--PRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSW-EAETYAQ------PDVLA-----  187 (337)
T ss_dssp             TTEEEEEEEC--CSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTT-TTTTBCC------CBCCC-----
T ss_pred             CCcEEEEEeC--CCCcceeEECCCCCEEEEeC--CeEEEEECCCCcEeeeeecccc-CCCceeC------CCccE-----
Confidence            7765544433  33567888999999887773  34444332        111110 0112555      55554     


Q ss_pred             eeEEee-cCC-----------------------eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511          140 SILSAS-MDK-----------------------TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       140 ~l~s~~-~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                       ++..+ .++                       .|.+||+.+  ++.. ....   ..+...+.+++|+|++++++++  
T Consensus       188 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~-~~~~---~~~~~~~~~~~~s~dg~~l~~~--  258 (337)
T 1pby_B          188 -VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET--GEMA-MREV---RIMDVFYFSTAVNPAKTRAFGA--  258 (337)
T ss_dssp             -CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT--CCEE-EEEE---EECSSCEEEEEECTTSSEEEEE--
T ss_pred             -EeeeccCCCceeeeeeccccccccccccccccceEEEeCCC--CCce-Eeec---CCCCCceeeEEECCCCCEEEEe--
Confidence             43333 222                       478999988  5443 3222   2344568899999999999888  


Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ++.|.+||+.+++     .+..+.. ...+.+++|+|++++|++++.++.|++||+.+++
T Consensus       259 ~~~v~~~d~~~~~-----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          259 YNVLESFDLEKNA-----SIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ESEEEEEETTTTE-----EEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCc-----CcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            7999999998763     3344432 3457899999999999988899999999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=1e-15  Score=132.34  Aligned_cols=269  Identities=13%  Similarity=0.084  Sum_probs=171.5

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSA   73 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~   73 (351)
                      .|+.|++||..+ ++.  +..+..+..+  .++|+        +++++|+++.          .+++|.+||..+.+...
T Consensus        29 ~d~~v~v~D~~t-~~~--~~~i~~g~~p--~i~~s--------pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~   95 (361)
T 2oiz_A           29 TESRVHVYDYTN-GKF--LGMVPTAFNG--HVQVS--------NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK   95 (361)
T ss_dssp             GGCEEEEEETTT-CCE--EEEEECCEEE--EEEEC--------TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE
T ss_pred             ccCeEEEEECCC-CeE--EEEecCCCCC--ceEEC--------CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE
Confidence            478999999988 643  4566666555  89999        8899999886          36789999998877665


Q ss_pred             eeecc-----cccceeeeEeeecCCeEEecCC--ceeEEEEEecccc-------ccceEEEEecCCCCCCCCCcccCCCc
Q 048511           74 NTQST-----YRKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPS  139 (351)
Q Consensus        74 ~~~~~-----~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~  139 (351)
                      .+...     .......++++|+|++++++..  ...+.++..-.+.       ......+.+.|     .....     
T Consensus        96 ~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p-----~~~~~-----  165 (361)
T 2oiz_A           96 EISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP-----NRPRS-----  165 (361)
T ss_dssp             EEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT-----TSSSE-----
T ss_pred             EEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC-----CCCee-----
Confidence            55432     1235678899999999998753  4566655432110       01112244563     22245     


Q ss_pred             eeEEeecCCeEEEEeccCCCcceEEEEEe-ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          140 SILSASMDKTMMIWQPEKTTGIWMNVVTV-GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       140 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                       +++.+.||.+.+|++... +........ ........+ ..+.+++++..++..+.++.+.++|+..............
T Consensus       166 -~~~~~~dg~~~~v~~~~~-g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~  242 (361)
T 2oiz_A          166 -FMTICGDGGLLTINLGED-GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLL  242 (361)
T ss_dssp             -EEEEETTSSEEEEEECTT-SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred             -EEEECCCCcEEEEEECCC-CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccccc
Confidence             888899999999998642 332211110 001111111 2334467777777778889999999865432100000000


Q ss_pred             c---cc----cccEEEEEeecCCCEEEEEeC-----------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          219 S---GH----FAAVMDISWSRSSDYLLSVSH-----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       219 ~---~~----~~~v~~v~~sp~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      .   .+    ......++|+|+++.++++..           .+.|.+||+.+.+          .+..+..+.  +..+
T Consensus       243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----------~v~~i~~~~--p~~i  310 (361)
T 2oiz_A          243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----------RVARIPGRD--ALSM  310 (361)
T ss_dssp             CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----------EEEEEECTT--CCEE
T ss_pred             CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----------EEEEEecCC--eeEE
Confidence            0   00    111223789999888776543           3489999998876          555555555  8999


Q ss_pred             EEeeeCCCcEEEEecCCCeEEEEecC-c--hhhhce
Q 048511          281 TIIQGKGNHRFVSGADEKVARVFEAP-L--SFLKTL  313 (351)
Q Consensus       281 ~~~~~~~~~~l~s~~~dg~v~vw~~~-~--~~~~~~  313 (351)
                      +|+|  ++++|++++. +.|.+||.. +  +.++++
T Consensus       311 a~sp--dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          311 TIDQ--QRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEET--TTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EECC--CCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9999  8998888877 999999987 5  555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=6.6e-15  Score=123.10  Aligned_cols=235  Identities=10%  Similarity=0.093  Sum_probs=159.9

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-----ccccceeeeEee-ecCCeEEecCC
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-----TYRKEVISLASY-IEGPVLVAGSS  100 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~l~~~~~  100 (351)
                      +|-..+.+|+++        +++.++++...++.|.+||.. +........     .....+..+++. +++.++++...
T Consensus        27 g~~~~p~~v~~~--------~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~   97 (286)
T 1q7f_A           27 GQFTEPSGVAVN--------AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS   97 (286)
T ss_dssp             TCBSCEEEEEEC--------TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred             CccCCCceEEEC--------CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence            445678999999        788888888889999999987 333322221     112356677884 66666666532


Q ss_pred             -ceeEEEEE-------ec-cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccc
Q 048511          101 -SYQVSVES-------LL-IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL  171 (351)
Q Consensus       101 -~~~~~~~~-------~~-~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  171 (351)
                       +..+..+.       .+ ..+...+.++++.      +++++      +++...++.|.+||..   +..+..+..   
T Consensus        98 ~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~~---g~~~~~~~~---  159 (286)
T 1q7f_A           98 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVD------NKGRI------IVVECKVMRVIIFDQN---GNVLHKFGC---  159 (286)
T ss_dssp             GGCEEEEECTTSCEEEEECTTTCSCEEEEEEC------TTSCE------EEEETTTTEEEEECTT---SCEEEEEEC---
T ss_pred             CCCEEEEECCCCcEEEEecCccCCCceEEEEe------CCCCE------EEEECCCCEEEEEcCC---CCEEEEeCC---
Confidence             44444332       22 1234568899999      77887      8887888999999965   444444321   


Q ss_pred             cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--cccccEEEEEeecCCCEEEEEeCCC-cEEE
Q 048511          172 SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHDQ-TTRV  248 (351)
Q Consensus       172 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~dg-~i~v  248 (351)
                      ..+...+..++++++++++++...++.|++||....      .+..+.  ++...+..++++++|+++++...++ .|.+
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~  233 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  233 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE
Confidence            123346889999999997777778999999998553      233332  2235789999999999888887776 9999


Q ss_pred             EcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          249 FAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       249 wd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ||.....        ...+... .....+.++++++  +++++++ +.|+.|++|+..
T Consensus       234 ~~~~g~~--------~~~~~~~-~~~~~~~~i~~~~--~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          234 FTQDGQL--------ISALESK-VKHAQCFDVALMD--DGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             ECTTSCE--------EEEEEES-SCCSCEEEEEEET--TTEEEEE-ETTTEEEEEECS
T ss_pred             ECCCCCE--------EEEEccc-CCCCcceeEEECC--CCcEEEE-CCCCeEEEEEcc
Confidence            9964322        1122111 1222477899999  8887777 569999999965

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=6.9e-16  Score=146.14  Aligned_cols=241  Identities=10%  Similarity=0.049  Sum_probs=155.4

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc----ceeeeEeeecCCeEEecCCcee--
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK----EVISLASYIEGPVLVAGSSSYQ--  103 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~--  103 (351)
                      ....++.|+        +++.+|+++  |++|++||+.+++....+......    ......++|||+.++.+..+..  
T Consensus        17 ~~~~~~~w~--------~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~   86 (740)
T 4a5s_A           17 LKLYSLRWI--------SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (740)
T ss_dssp             CCCCCEEEC--------SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccccEEC--------CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence            346689999        889899886  999999999988764433222111    1223788999999888765422  


Q ss_pred             -------EEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          104 -------VSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       104 -------~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                             +.++.       .+..|...+...+|+      |||+.      ||.+ .++.|++||+..  +.... +.. 
T Consensus        87 r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~S------PdG~~------la~~-~~~~i~~~~~~~--~~~~~-lt~-  149 (740)
T 4a5s_A           87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWS------PVGHK------LAYV-WNNDIYVKIEPN--LPSYR-ITW-  149 (740)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEEC------SSTTC------EEEE-ETTEEEEESSTT--SCCEE-CCS-
T ss_pred             EEccceEEEEEECCCCcEEEcccCCCcceeeEEC------CCCCE------EEEE-ECCeEEEEECCC--CceEE-EcC-
Confidence                   22332       345567789999999      79998      8887 578999999987  44222 110 


Q ss_pred             cccccccce-----------------EEEEEcCCCCEEEEEeeCC-----------------------------------
Q 048511          170 ELSHSALGF-----------------YGGHWSPDGRSILAHGYGG-----------------------------------  197 (351)
Q Consensus       170 ~~~~~~~~i-----------------~~i~~~~~~~~l~~~~~dg-----------------------------------  197 (351)
                        .++...+                 ..+.|+|||+.|+....|.                                   
T Consensus       150 --~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          150 --TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             --CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             --CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence              1121112                 3489999999998876432                                   


Q ss_pred             -eEEEEEccc---CcccCcccccccc------cccccEEEEEeecCCCEEEEEeC----CCcEEEEcCCCccccccCccc
Q 048511          198 -AFHLWRNVG---VDIDNWQPQKVPS------GHFAAVMDISWSRSSDYLLSVSH----DQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       198 -~i~~~d~~~---~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~  263 (351)
                       .|++||+.+   ++..   ....+.      +|...+..++|+|||+.++....    +..|++||+.+++.      .
T Consensus       228 ~~l~v~d~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~------~  298 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNA---TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG------R  298 (740)
T ss_dssp             EEEEEEETTSCCSSSCC---CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT------E
T ss_pred             eEEEEEECCCCCCCCcc---eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc------c
Confidence             477888877   5210   111222      37778999999999997665432    34799999987651      0


Q ss_pred             eEE--eccc--ccccccee-----EEEEeeeCCCcEEE-Eec-CC--CeEEEEecCchhh
Q 048511          264 WHE--VARP--QVHGHDIN-----CVTIIQGKGNHRFV-SGA-DE--KVARVFEAPLSFL  310 (351)
Q Consensus       264 ~~~--~~~~--~~~~~~i~-----~~~~~~~~~~~~l~-s~~-~d--g~v~vw~~~~~~~  310 (351)
                      +.+  +..+  ..|...+.     ..+|+|  ||+.|+ ..+ .+  ..|++|++.+...
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp--DG~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTL--DGNSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EEECGGGCEEEECSSSCSSSSSCCCCEECT--TSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             cceeEEEEeeeccCCceEccCcCCCceEcC--CCCEEEEEEEcCCCceEEEEEECCCCce
Confidence            101  1111  23333333     788999  888776 555 33  4688888775433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.69  E-value=2.2e-15  Score=129.46  Aligned_cols=156  Identities=8%  Similarity=-0.019  Sum_probs=107.9

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      +++.++++++.+++|.+||+.+++......                                  .+....+..++|+   
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------~~~~~~~~~~~~s---   51 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCV----------------------------------MPDKFGPGTAMMA---   51 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEE----------------------------------CSSCCSSCEEEEC---
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEe----------------------------------cCCCCCCceeEEC---
Confidence            678899999999999999998765432221                                  1111246788999   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc-ccccceEEEEEcCCCCEEEEEeeC---------
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWSPDGRSILAHGYG---------  196 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d---------  196 (351)
                         ++++.     ++++...++.|.+||+.+  ++....+...... .....+..++|+|+++++++++.+         
T Consensus        52 ---~dg~~-----~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           52 ---PDNRT-----AYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             ---TTSSE-----EEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             ---CCCCE-----EEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence               67764     045566789999999988  6666555421100 002236789999999999998866         


Q ss_pred             ---CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          197 ---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       197 ---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                         +.|.+||+.+++..  ..+..+. +...+.+++|+|+++ +++++.  .|++||+.+++
T Consensus       122 ~~~~~i~~~d~~~~~~~--~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~  177 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEA--KPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGK  177 (349)
T ss_dssp             ECCCEEEEEEGGGGGGB--CCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCC
T ss_pred             cCCCeEEEEECCCcccc--ceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCc
Confidence               99999999875321  1222232 334688899999999 555543  49999998775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.1e-14  Score=124.28  Aligned_cols=262  Identities=7%  Similarity=-0.035  Sum_probs=171.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEee-e-----ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACEL-K-----GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~-~-----~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~   75 (351)
                      |+.+++|.+||.++ +++.  ..+ .     ........+.+.         +++++++...++.|.+||..+++.+..+
T Consensus        13 g~~~~~l~~~d~~t-~~~~--~~i~~~~n~~~lg~~~~~i~~~---------~~~lyv~~~~~~~v~viD~~t~~~~~~i   80 (328)
T 3dsm_A           13 QYSNATLSYYDPAT-CEVE--NEVFYRANGFKLGDVAQSMVIR---------DGIGWIVVNNSHVIFAIDINTFKEVGRI   80 (328)
T ss_dssp             TSCCBEEEEEETTT-TEEE--CSHHHHHHSSCCBSCEEEEEEE---------TTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred             CCCCceEEEEECCC-CEEh--hhhHhhhcCcccCccceEEEEE---------CCEEEEEEcCCCEEEEEECcccEEEEEc
Confidence            56789999999998 7432  222 1     112345778776         3556666667899999999988876655


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEEeccc--------cc-----cceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIG--------HE-----DWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------h~-----~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .  .......+++++++..+++...+..+..+..-.+        ..     .....+++.       ++.+      ++
T Consensus        81 ~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-------~~~l------yv  145 (328)
T 3dsm_A           81 T--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-------GKYV------YV  145 (328)
T ss_dssp             E--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-------TTEE------EE
T ss_pred             C--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-------CCEE------EE
Confidence            3  2356778888888855555435555554432111        00     022233332       2333      44


Q ss_pred             Eee-cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----------CeEEEEEcccCcccC
Q 048511          143 SAS-MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----------GAFHLWRNVGVDIDN  211 (351)
Q Consensus       143 s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----------g~i~~~d~~~~~~~~  211 (351)
                      +.. .++.|.++|+.+  ++....+...      .....++++|++++++++..+          +.|.++|..+.+   
T Consensus       146 ~~~~~~~~v~viD~~t--~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---  214 (328)
T 3dsm_A          146 NCWSYQNRILKIDTET--DKVVDELTIG------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---  214 (328)
T ss_dssp             EECTTCCEEEEEETTT--TEEEEEEECS------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---
T ss_pred             EcCCCCCEEEEEECCC--CeEEEEEEcC------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---
Confidence            443 488999999998  7766666532      234578899999977776655          789999998763   


Q ss_pred             cccccccccc-cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511          212 WQPQKVPSGH-FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR  290 (351)
Q Consensus       212 ~~~~~~~~~~-~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  290 (351)
                        ....+... ......++|+|+++.|+++..  .|.+||..+++..        ..............++++| .++.+
T Consensus       215 --v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~--------~~~~~~~~~~~p~gi~vdp-~~g~l  281 (328)
T 3dsm_A          215 --VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP--------VRPFLEFRDTKYYGLTVNP-NNGEV  281 (328)
T ss_dssp             --EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC--------SSCSBCCCSSCEEEEEECT-TTCCE
T ss_pred             --EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee--------eeeeecCCCCceEEEEEcC-CCCeE
Confidence              23333221 236789999999998887754  8999999877621        0011111245588999997 35667


Q ss_pred             EEEe----cCCCeEEEEecCchhhhcee
Q 048511          291 FVSG----ADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       291 l~s~----~~dg~v~vw~~~~~~~~~~~  314 (351)
                      +++.    ..++.|.+||..++.+.++.
T Consensus       282 yva~~~~y~~~~~V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          282 YVADAIDYQQQGIVYRYSPQGKLIDEFY  309 (328)
T ss_dssp             EEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred             EEEcccccccCCEEEEECCCCCEEEEEE
Confidence            7776    67899999999988887775

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=2.2e-15  Score=131.60  Aligned_cols=252  Identities=12%  Similarity=0.037  Sum_probs=156.5

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce--e
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV--I   84 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~   84 (351)
                      .|.+||+.+ ++.  .....+|...+..+.|+        ++++.|+.++.++.|.+||+.+++........ ....  .
T Consensus        61 ~l~~~d~~~-g~~--~~lt~~~~~~~~~~~~s--------pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~  128 (388)
T 3pe7_A           61 NYYLLDLNT-QVA--TQLTEGRGDNTFGGFLS--------PDDDALFYVKDGRNLMRVDLATLEENVVYQVP-AEWVGYG  128 (388)
T ss_dssp             EEEEEETTT-CEE--EECCCSSCBCSSSCEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEECC-TTEEEEE
T ss_pred             eEEEEeCCC-Cce--EEeeeCCCCCccceEEc--------CCCCEEEEEeCCCeEEEEECCCCcceeeeech-hhccccc
Confidence            488888887 643  33445666666678899        89999999999999999999987654333222 1112  2


Q ss_pred             eeEeeecCCeEEec----------------------CCceeEEEEE-------eccccccceEEEEecCCCCCCC-CCcc
Q 048511           85 SLASYIEGPVLVAG----------------------SSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPS-DGVS  134 (351)
Q Consensus        85 ~~~~~~~~~~l~~~----------------------~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~-~~~~  134 (351)
                      ...+++++..++..                      .....+..+.       .+..+...+..+.|+      | +++.
T Consensus       129 ~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~s------p~dg~~  202 (388)
T 3pe7_A          129 TWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYR------PYDDST  202 (388)
T ss_dssp             EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE------TTEEEE
T ss_pred             ceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEEC------CCCCCE
Confidence            23347788777631                      1223333322       233455668899999      7 8888


Q ss_pred             cCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcCCCCEEEEEee-CC----eEEE
Q 048511          135 CQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSPDGRSILAHGY-GG----AFHL  201 (351)
Q Consensus       135 ~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~-dg----~i~~  201 (351)
                            |+..+.+      ..|.++|+..  +.. ..+.     .+.  ..+...+|+|+|+.|+..+. ++    .|++
T Consensus       203 ------l~~~~~~~~~~~~~~l~~~d~~~--~~~-~~l~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (388)
T 3pe7_A          203 ------VAFCHEGPHDLVDARMWLINEDG--TNM-RKVK-----THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS  268 (388)
T ss_dssp             ------EEEEECSCTTTSSCSEEEEETTS--CCC-EESC-----CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred             ------EEEEEecCCCCCcceEEEEeCCC--Cce-EEee-----eCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence                  8777653      3677777765  322 1221     222  35778899999997765443 22    3999


Q ss_pred             EEcccCcccCccccccccccccc---EEEEEeecCCCEEEEE---------eCCCcEEEEcCCCccccccCccceEEecc
Q 048511          202 WRNVGVDIDNWQPQKVPSGHFAA---VMDISWSRSSDYLLSV---------SHDQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       202 ~d~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~l~s~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      ||+.+++.   ..+..+.++...   ...+.|+|+|+.|+..         ..+..|++||+.+++.        ..+. 
T Consensus       269 ~d~~~g~~---~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~l~-  336 (388)
T 3pe7_A          269 ADPETLEN---RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--------HRVA-  336 (388)
T ss_dssp             ECTTTCCE---EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--------EEEE-
T ss_pred             EecCCCce---EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--------EEec-
Confidence            99988753   222223221110   1123799999987753         4567899999987652        1221 


Q ss_pred             cccccc-----------ceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511          270 PQVHGH-----------DINCVTIIQGKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       270 ~~~~~~-----------~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                        .+..           .+.+++|+|  |++.|+..+ .+|...||.++
T Consensus       337 --~~~~~~~~~~~~~~~~~~~~~~sp--Dg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          337 --RHDTSWKVFEGDRQVTHPHPSFTP--DDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             --ECCCCCCCBTTBSSTTCCCCEECT--TSSEEEEEECTTSSCEEEEEE
T ss_pred             --cccCcccccccccccCCCCccCCC--CCCEEEEEecCCCceeEEEEE
Confidence              2222           467889999  888777555 57777777644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=8.3e-15  Score=127.02  Aligned_cols=223  Identities=8%  Similarity=-0.023  Sum_probs=142.1

Q ss_pred             eEEEEEcc-CCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccE--EEEee-------------CCCcEEEEecCC-C
Q 048511            7 KIHLYRGQ-RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISIL--LVSSS-------------QDKVIRIWKLAL-R   69 (351)
Q Consensus         7 ~i~vw~~~-~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~--l~t~~-------------~dg~i~iwd~~~-~   69 (351)
                      .|.+|++. + +++..+.....+ +.+.+++|+        +++++  ++++.             .++++.+|++.. +
T Consensus        61 ~v~~~~~~~~-g~~~~~~~~~~~-g~~~~~~~s--------pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g  130 (365)
T 1jof_A           61 KWSSFAVKSP-TEIVHEASHPIG-GHPRANDAD--------TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG  130 (365)
T ss_dssp             EEEEEEEEET-TEEEEEEEEECC-SSGGGGCTT--------SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC
T ss_pred             eEEEEEECCC-CCEEEeeEeecC-CCCccEEEC--------CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC
Confidence            79999997 5 654333232211 335668888        88884  55653             689999999974 4


Q ss_pred             cccceeec---ccccceeeeEeeecCCeEEecC-CceeEEEEEe-----------cc--ccccceEEEEecCCCCCCCCC
Q 048511           70 GSSANTQS---TYRKEVISLASYIEGPVLVAGS-SSYQVSVESL-----------LI--GHEDWVYSVQWEPPSTAPSDG  132 (351)
Q Consensus        70 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~-----------~~--~h~~~v~~l~~~p~~~~~~~~  132 (351)
                      +.......   ........++++|+|+.+++++ ....+.++..           +.  .|...+..++|+      +++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s------pdg  204 (365)
T 1jof_A          131 KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH------PTG  204 (365)
T ss_dssp             CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC------TTS
T ss_pred             cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC------CCC
Confidence            33222221   1235678899999999877653 2334443332           11  134568889999      788


Q ss_pred             cccCCCceeEEeec-CCeEEEEeccCCCcceEE---EEEeccc--ccccc------ceEEEE-EcCCCCEEEEEeeCC--
Q 048511          133 VSCQQPSSILSASM-DKTMMIWQPEKTTGIWMN---VVTVGEL--SHSAL------GFYGGH-WSPDGRSILAHGYGG--  197 (351)
Q Consensus       133 ~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~---~~~~~~~--~~~~~------~i~~i~-~~~~~~~l~~~~~dg--  197 (351)
                      ++      +++++. ++.|.+|++....+....   .+.....  .++..      .+..++ |+|+|++|+++..+.  
T Consensus       205 ~~------l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          205 NY------LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             SE------EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             CE------EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            87      777664 789999987643244322   1221100  11121      478999 999999988776543  


Q ss_pred             ----eEEEEEcc-cCcccCccccc-ccccccccEEEEEeec---CCCEEEEEeCC-CcEEEEcCCCc
Q 048511          198 ----AFHLWRNV-GVDIDNWQPQK-VPSGHFAAVMDISWSR---SSDYLLSVSHD-QTTRVFAPWKN  254 (351)
Q Consensus       198 ----~i~~~d~~-~~~~~~~~~~~-~~~~~~~~v~~v~~sp---~~~~l~s~~~d-g~i~vwd~~~~  254 (351)
                          .|.+|++. +++.   ..+. ....+...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       279 ~~~~~i~v~~~~~~g~~---~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSI---EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCE---EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCE---EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                89999996 4321   1111 1222444567789999   89999988764 89999998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=2.5e-14  Score=133.84  Aligned_cols=264  Identities=10%  Similarity=-0.017  Sum_probs=159.8

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCcee---------EEEeeCCcccCCCCCccE-EEEeeC-CCcEEEEecC--C-
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIR---------SLDFSLPVCTSGEAISIL-LVSSSQ-DKVIRIWKLA--L-   68 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~---------~l~~~~~~~~~~~~~~~~-l~t~~~-dg~i~iwd~~--~-   68 (351)
                      +.++...||.....++   ...+..|...+.         ...|+    .+  |+++. |+.++. +..|.+|++.  . 
T Consensus        44 ~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~----~S--PDg~~~la~~~~~~~~l~~~~~~~~g~  114 (662)
T 3azo_A           44 AEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGV----PR--PAGGPLLVFTHFGDQRLYAFEPDAPGG  114 (662)
T ss_dssp             TTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEE----CC--SSSSCEEEEEBTTTCCEEEECTTSTTC
T ss_pred             ccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceee----ee--cCCCeEEEEEECCCCeEEEEcCCCCCC
Confidence            4577889998654243   345556665555         45454    11  67877 665543 4556666654  2 


Q ss_pred             Ccccceeecc----cccceeeeEeeecCCeEEecCCc----------eeEEEEEe-------------cc-ccccceEEE
Q 048511           69 RGSSANTQST----YRKEVISLASYIEGPVLVAGSSS----------YQVSVESL-------------LI-GHEDWVYSV  120 (351)
Q Consensus        69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~-------------~~-~h~~~v~~l  120 (351)
                      +. ...+...    .......++|+|+|+.|+....+          ..+.++..             +. .+...+..+
T Consensus       115 ~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  193 (662)
T 3azo_A          115 AV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGP  193 (662)
T ss_dssp             CC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCC
T ss_pred             CC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCc
Confidence            32 2222211    23456789999999998876654          34444432             22 344567778


Q ss_pred             EecCCCCCCCCCcccCCCceeEEeecCC--------eEEEEecc-CCCcc--eEEEEEeccccccccceEEEEEcCCCCE
Q 048511          121 QWEPPSTAPSDGVSCQQPSSILSASMDK--------TMMIWQPE-KTTGI--WMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       121 ~~~p~~~~~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~-~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      +|+      |||+.      |+.++.++        .|.+||+. +  +.  ....+.    ..+...+..++|+|+|++
T Consensus       194 ~~S------pDG~~------la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~~~~~l~----~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          194 RLS------PDGRQ------AVWLAWDHPRMPWEGTELKTARVTED--GRFADTRTLL----GGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             EEC------TTSSE------EEEEEECTTCCTTTCEEEEEEEECTT--SCEEEEEEEE----EETTBCEEEEEECTTSCE
T ss_pred             eEC------CCCCE------EEEEECCCCCCCCCCcEEEEEEECCC--CcccccEEeC----CCCCceEcceEECCCCeE
Confidence            899      79998      88887653        79999998 4  41  222222    134567899999999998


Q ss_pred             EEEEeeCC--eEEEEEcccCcccCccccccccccccc--------EEEEEeecCCCEEEEEeCCCcEEEEcC--CCcccc
Q 048511          190 ILAHGYGG--AFHLWRNVGVDIDNWQPQKVPSGHFAA--------VMDISWSRSSDYLLSVSHDQTTRVFAP--WKNVAS  257 (351)
Q Consensus       190 l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~--------v~~v~~sp~~~~l~s~~~dg~i~vwd~--~~~~~~  257 (351)
                      ++++..++  .|.+||+.+++.     ......+...        +..++|+|+++++++++. +.++||.+  ..+.  
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~-----~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--  327 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAA-----TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--  327 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCE-----EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--
T ss_pred             EEEECCCCCeEEEEEECCCCce-----eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--
Confidence            88887788  666666655431     1122222111        467899999999999988 99999944  3332  


Q ss_pred             ccCccceEEeccccccccceeEE-EEeeeCCCcEEEEecCCCeEEEE--ecCchhhhce
Q 048511          258 LMGENSWHEVARPQVHGHDINCV-TIIQGKGNHRFVSGADEKVARVF--EAPLSFLKTL  313 (351)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~s~~~dg~v~vw--~~~~~~~~~~  313 (351)
                               +..+..+...+..+ +++.  +.-++++++.+....+|  |+.+.....+
T Consensus       328 ---------~~~l~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          328 ---------LVDAAGPWTEWAATLTVSG--TRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             ---------EEECCSSCCEEEEEEEEET--TEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             ---------EEEecCCCCeEEEEEecCC--CEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence                     22334455556666 4443  44445556666554554  5544333333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=7.7e-15  Score=128.14  Aligned_cols=258  Identities=11%  Similarity=0.046  Sum_probs=160.3

Q ss_pred             EccCCCceEEEEeeeecCCceeE-----EEeeCCcccCCCCCccEEEEeeC-CCc--EEEEecCCCcccceeecccccce
Q 048511           12 RGQRTGKFVRACELKGHTDWIRS-----LDFSLPVCTSGEAISILLVSSSQ-DKV--IRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~h~~~V~~-----l~~~~~~~~~~~~~~~~l~t~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      +..+ +  ..+..+..|......     .+|+        |+|++|+.++. ++.  |.+||+.+++..... .......
T Consensus        16 ~~~~-g--~~~~~lt~~~~~~~~~~~~~~~~S--------pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~   83 (388)
T 3pe7_A           16 DAST-G--AQVTRLTPPDVTCHRNYFYQKCFT--------RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNT   83 (388)
T ss_dssp             CTTT-C--CEEEECSCTTSCEECCCTTSCCBC--------TTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCS
T ss_pred             cCCC-C--cceEEecCCcccccchhhcCccCC--------CCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCc
Confidence            4444 4  345567777766655     7899        88999998887 674  778888876544332 2222233


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEec--------cccccceEEEE--ecCCCCCCCCCcccCCCceeEEe---------
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLL--------IGHEDWVYSVQ--WEPPSTAPSDGVSCQQPSSILSA---------  144 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~h~~~v~~l~--~~p~~~~~~~~~~~~~~~~l~s~---------  144 (351)
                      ....|+|+|+.|+....+..+..+..-        ..+...+....  ++      +++.+      ++..         
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~------~dg~~------l~~~~~~~~~~~~  151 (388)
T 3pe7_A           84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVAN------SDCTK------LVGIEIRREDWVP  151 (388)
T ss_dssp             SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEEC------TTSSE------EEEEEEEGGGCCC
T ss_pred             cceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeEC------CCCCe------eccccccCccccc
Confidence            467899999999887766555544322        22333333333  35      67776      6532         


Q ss_pred             -------------ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeC------CeEEEEEc
Q 048511          145 -------------SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYG------GAFHLWRN  204 (351)
Q Consensus       145 -------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~~~d~  204 (351)
                                   ..+..|.+||+.+  ++.....      .+...+..++|+| +++.|+....+      ..|.++|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVIL------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             ccccchhhhhhccCCcceEEEEECCC--CceEEee------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                         2346799999988  5433222      3345688999999 99988877753      37888887


Q ss_pred             ccCcccCccccccccccc--ccEEEEEeecCCCEEEEEeC-CC----cEEEEcCCCccccccCccceEEecccccccc--
Q 048511          205 VGVDIDNWQPQKVPSGHF--AAVMDISWSRSSDYLLSVSH-DQ----TTRVFAPWKNVASLMGENSWHEVARPQVHGH--  275 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~--~~v~~v~~sp~~~~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--  275 (351)
                      .+..      ...+..+.  ..+....|+|||+.|+..+. ++    .|++||+.+++.        ..+.....+..  
T Consensus       224 ~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------~~l~~~~~~~~~~  289 (388)
T 3pe7_A          224 DGTN------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------RQLTSMPACSHLM  289 (388)
T ss_dssp             TSCC------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------EEEEEECCEEEEE
T ss_pred             CCCc------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------EEEEcCCCceeee
Confidence            6643      23333333  35778899999998765443 22    399999988762        12222222111  


Q ss_pred             -ceeEEEEeeeCCCcEEEEe---------cCCCeEEEEecCchhhhceeecc
Q 048511          276 -DINCVTIIQGKGNHRFVSG---------ADEKVARVFEAPLSFLKTLNHAT  317 (351)
Q Consensus       276 -~i~~~~~~~~~~~~~l~s~---------~~dg~v~vw~~~~~~~~~~~~~~  317 (351)
                       ....++|+|  |++.|+..         ..+..|++||+.+..+..+..+.
T Consensus       290 ~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~  339 (388)
T 3pe7_A          290 SNYDGSLMVG--DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD  339 (388)
T ss_dssp             ECTTSSEEEE--EECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred             ecCCCCeEcc--CCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence             122347999  88877743         55679999999865555555443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.2e-14  Score=136.07  Aligned_cols=250  Identities=10%  Similarity=0.059  Sum_probs=161.5

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCcccceeeccccccee---------eeEee--
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSSANTQSTYRKEVI---------SLASY--   89 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~--   89 (351)
                      ..+.+|...|..++|+        ++.-++++.  +.++...||....+.....+... ...+.         ...++  
T Consensus        17 ~~~~~~~~~~~~~~~s--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           17 ALVASRSGRPACVGAV--------GDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-PWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             HHHHHTCSCCEEEEEE--------TTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-TCCBCCCGGGTCCCCEEEECC
T ss_pred             HHHhhcCCccceeEEc--------CCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-CccccccccccCCccceeeee
Confidence            3466789999999999        666666766  56889999996444333222221 11222         44454  


Q ss_pred             ecCCe-EEecCC-ceeEEEEE----------eccc-----cccceEEEEecCCCCCCCCCcccCCCceeEEeecC-----
Q 048511           90 IEGPV-LVAGSS-SYQVSVES----------LLIG-----HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-----  147 (351)
Q Consensus        90 ~~~~~-l~~~~~-~~~~~~~~----------~~~~-----h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-----  147 (351)
                      |+|+. ++.... +..+..+.          .+..     |...+..++|+      +|++.      |++++.+     
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s------pDg~~------l~~~~~~~~~~~  155 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL------PERGE------VWCMAEEFTGEG  155 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE------TTTTE------EEEEEEEECSSS
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC------CCCCE------EEEEEecccCCC
Confidence            88887 665432 33333322          1223     55678899999      79998      9988877     


Q ss_pred             -----CeEEEEeccCCC----cceEEEEEecccc-ccccceEEEEEcCCCCEEEEEeeCC--------eEEEEEcc-cCc
Q 048511          148 -----KTMMIWQPEKTT----GIWMNVVTVGELS-HSALGFYGGHWSPDGRSILAHGYGG--------AFHLWRNV-GVD  208 (351)
Q Consensus       148 -----~~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg--------~i~~~d~~-~~~  208 (351)
                           ..|++||+....    +. ...+     . .+...+..++|+|||++|+.++.++        .|++||+. ++.
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l-----~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRSA-VREL-----SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGGG-SEES-----SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             CCCceeEEEEEECCCCccccCCc-eeEE-----EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                 589999987611    11 1111     1 2334677899999999999887653        79999998 441


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCccccccCccceEEecccccccc--------cee
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGH--------DIN  278 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~  278 (351)
                      ..  ........+...+..+.|+|||++++++..++  .|.+||+.+++.        ..+..  .+..        .+.
T Consensus       230 ~~--~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--------~~l~~--~~~~~~~p~w~~~~~  297 (662)
T 3azo_A          230 FA--DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--------TQLCR--REEEFAGPLWTPGMR  297 (662)
T ss_dssp             EE--EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--------EESSC--CSSBSSCCCCSTTCC
T ss_pred             cc--ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce--------eeccc--ccccccCccccccCc
Confidence            10  11222334567899999999999888888888  666677655431        12211  1111        156


Q ss_pred             EEEEeeeCCCcEEEEecCCCeEEEE--ecCchhhhcee
Q 048511          279 CVTIIQGKGNHRFVSGADEKVARVF--EAPLSFLKTLN  314 (351)
Q Consensus       279 ~~~~~~~~~~~~l~s~~~dg~v~vw--~~~~~~~~~~~  314 (351)
                      .++|++  ++.++++++. +.++||  |+.+..++.+.
T Consensus       298 ~~~~~~--~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          298 WFAPLA--NGLIAVVHGK-GAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             SEEECT--TSCEEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred             eEeEeC--CCEEEEEEEc-CccEEEEEECCCCcEEEec
Confidence            788888  8999999998 999999  55544445444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=1.2e-14  Score=137.62  Aligned_cols=225  Identities=12%  Similarity=0.090  Sum_probs=141.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCc-----eeEEEeeCCcccCCCCCccEEEEeeCC---------CcEEEEecCCCc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDW-----IRSLDFSLPVCTSGEAISILLVSSSQD---------KVIRIWKLALRG   70 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~   70 (351)
                      ||+|++||+.+ ++.  ...+.+|...     ...+.|+        |+|++|+.++.+         +.+.+||+.+++
T Consensus        35 ~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~S--------pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~  103 (740)
T 4a5s_A           35 ENNILVFNAEY-GNS--SVFLENSTFDEFGHSINDYSIS--------PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ  103 (740)
T ss_dssp             TTEEEEEETTT-CCE--EEEECTTTTTTCCSCCCEEEEC--------TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred             CCcEEEEECCC-Cce--EEEEechhhhhhcccccceEEC--------CCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence            88999999998 643  3456666543     2447889        899999998876         556799999876


Q ss_pred             ccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe---------ccccccce-----------------EEEEecC
Q 048511           71 SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL---------LIGHEDWV-----------------YSVQWEP  124 (351)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~h~~~v-----------------~~l~~~p  124 (351)
                      ....  ..........+|+|+|+.|+.... ..+.++..         ..++...+                 ..+.|+ 
T Consensus       104 ~~~l--~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS-  179 (740)
T 4a5s_A          104 LITE--ERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS-  179 (740)
T ss_dssp             ECCS--SCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-
T ss_pred             EEEc--ccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEEC-
Confidence            5432  222346789999999998887643 34433321         11222222                 248899 


Q ss_pred             CCCCCCCCcccCCCceeEEeecCC------------------------------------eEEEEeccC---CCcceEEE
Q 048511          125 PSTAPSDGVSCQQPSSILSASMDK------------------------------------TMMIWQPEK---TTGIWMNV  165 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~s~~~d~------------------------------------~i~iwd~~~---~~~~~~~~  165 (351)
                           |||+.      ||.++.|.                                    .|++||+.+   .+......
T Consensus       180 -----pDg~~------la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          180 -----PNGTF------LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             -----TTSSE------EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             -----CCCCE------EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence                 79998      88876443                                    366677664   31101112


Q ss_pred             EEe-ccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccC-ccccccc--ccccccEE-----EEEeec
Q 048511          166 VTV-GELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDN-WQPQKVP--SGHFAAVM-----DISWSR  232 (351)
Q Consensus       166 ~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~-~~~~~~~--~~~~~~v~-----~v~~sp  232 (351)
                      +.. .....+...+..++|+||++.++.....    ..|.+||+.+++... ...+..+  ..|...|.     ...|+|
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp  328 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL  328 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence            210 0001255678899999999976655432    379999998874000 0112222  34555544     688999


Q ss_pred             CCCEEE-EEeC-C--CcEEEEcCCCcc
Q 048511          233 SSDYLL-SVSH-D--QTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~-s~~~-d--g~i~vwd~~~~~  255 (351)
                      ||+.|+ ..+. +  ..|++||...+.
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            999876 6654 3  468888887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.3e-13  Score=114.36  Aligned_cols=239  Identities=10%  Similarity=-0.057  Sum_probs=163.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      +++.|+.|++||.++ +  +.+..+..+. ..+.++.+.        ++|++|+  +.++.|..||. +++.+.....  
T Consensus        10 ~~~~~~~v~~~d~~t-G--~~~w~~~~~~~~~~~~~~~~--------pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~--   73 (276)
T 3no2_A           10 GGSGWNKIAIINKDT-K--EIVWEYPLEKGWECNSVAAT--------KAGEILF--SYSKGAKMITR-DGRELWNIAA--   73 (276)
T ss_dssp             ECTTCSEEEEEETTT-T--EEEEEEECCTTCCCCEEEEC--------TTSCEEE--ECBSEEEEECT-TSCEEEEEEC--
T ss_pred             eeCCCCEEEEEECCC-C--eEEEEeCCCccCCCcCeEEC--------CCCCEEE--eCCCCEEEECC-CCCEEEEEcC--
Confidence            367899999999988 7  4567777665 478999999        8899888  34778999998 6655443321  


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKT  158 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~  158 (351)
                                                      +....+.++.+.      +++++      +++.+. ++.|..+|. . 
T Consensus        74 --------------------------------~~~~~~~~~~~~------~dG~~------lv~~~~~~~~v~~vd~-~-  107 (276)
T 3no2_A           74 --------------------------------PAGCEMQTARIL------PDGNA------LVAWCGHPSTILEVNM-K-  107 (276)
T ss_dssp             --------------------------------CTTCEEEEEEEC------TTSCE------EEEEESTTEEEEEECT-T-
T ss_pred             --------------------------------CCCccccccEEC------CCCCE------EEEecCCCCEEEEEeC-C-
Confidence                                            122357788888      78888      888777 777777775 3 


Q ss_pred             CcceEEEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511          159 TGIWMNVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  237 (351)
                       ++.+..+.+... ..+......+++.++|+++++...++.|..||.. ++     .+.++... ..+.++...++++++
T Consensus       108 -Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~-----~~w~~~~~-~~~~~~~~~~~g~~~  179 (276)
T 3no2_A          108 -GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ-----LLNSVKLS-GTPFSSAFLDNGDCL  179 (276)
T ss_dssp             -SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----EEEEEECS-SCCCEEEECTTSCEE
T ss_pred             -CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----EEEEEECC-CCccceeEcCCCCEE
Confidence             666666654321 1222345566789999999999999999999998 53     34444432 345677888999999


Q ss_pred             EEEeCCCcEEEEcCCCccccccCccceEEecc-ccc-cccceeEEEEeeeCCCcEEEEec--C--------CCeEEEEec
Q 048511          238 LSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-PQV-HGHDINCVTIIQGKGNHRFVSGA--D--------EKVARVFEA  305 (351)
Q Consensus       238 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~~l~s~~--~--------dg~v~vw~~  305 (351)
                      ++++.++.|..+|..+++      ..|+.-.. ... .-..+..++..+  ++.++++..  .        ++.+.-.+.
T Consensus       180 v~~~~~~~v~~~d~~tG~------~~w~~~~~~~~~~~l~~~~~~~~~~--~G~i~v~~~~g~~~~~~~~~~~~~~~~~~  251 (276)
T 3no2_A          180 VACGDAHCFVQLNLESNR------IVRRVNANDIEGVQLFFVAQLFPLQ--NGGLYICNWQGHDREAGKGKHPQLVEIDS  251 (276)
T ss_dssp             EECBTTSEEEEECTTTCC------EEEEEEGGGSBSCCCSEEEEEEECT--TSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred             EEeCCCCeEEEEeCcCCc------EEEEecCCCCCCccccccccceEcC--CCCEEEEeccCccccccccCCceEEEECC
Confidence            998888899999998887      24443221 111 122367777877  888888773  1        333333444


Q ss_pred             Cchhhhceeecc
Q 048511          306 PLSFLKTLNHAT  317 (351)
Q Consensus       306 ~~~~~~~~~~~~  317 (351)
                      +++.+-++....
T Consensus       252 ~g~~~W~~~~~~  263 (276)
T 3no2_A          252 EGKVVWQLNDKV  263 (276)
T ss_dssp             TSBEEEEECCTT
T ss_pred             CCCEEEEecCcc
Confidence            577766665544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.2e-13  Score=115.32  Aligned_cols=215  Identities=10%  Similarity=0.125  Sum_probs=145.5

Q ss_pred             CCCceEEEEEccCCCceEEEEeee------ecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCccccee
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELK------GHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANT   75 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~   75 (351)
                      ..++.|++||... ..   +..+.      +|...+.++++.    +   +++.++++... ++.|.+|| .++......
T Consensus        48 ~~~~~i~~~d~~g-~~---~~~~~~~~~~~~~~~~p~~i~~~----~---~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~  115 (286)
T 1q7f_A           48 TNNHRIQIFDKEG-RF---KFQFGECGKRDSQLLYPNRVAVV----R---NSGDIIVTERSPTHQIQIYN-QYGQFVRKF  115 (286)
T ss_dssp             GGGTEEEEECTTS-CE---EEEECCBSSSTTCBSSEEEEEEE----T---TTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred             CCCCEEEEECCCC-cE---EEEecccCCCcccccCceEEEEE----c---CCCeEEEEcCCCCCEEEEEC-CCCcEEEEe
Confidence            4578899999775 32   22332      344678899994    1   56666666543 88999999 445444333


Q ss_pred             ecccccceeeeEeeecCCeEEecCCceeEEEEE-------ecc--ccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           76 QSTYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLI--GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      .......+..+++.++|+++++......+..+.       .+.  ++...+..++++      +++++      +++...
T Consensus       116 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~------~~g~l------~v~~~~  183 (286)
T 1q7f_A          116 GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN------DKQEI------FISDNR  183 (286)
T ss_dssp             CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEEC------SSSEE------EEEEGG
T ss_pred             cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEEC------CCCCE------EEEECC
Confidence            333334677899999998777765555454332       121  344568899999      78888      888888


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCccccccccccc--c
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHF--A  223 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~--~  223 (351)
                      ++.|++||..   +..+..+..   ..+...+..++++++++++++...++ .|.+||....      .+..+..+.  .
T Consensus       184 ~~~i~~~~~~---g~~~~~~~~---~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~------~~~~~~~~~~~~  251 (286)
T 1q7f_A          184 AHCVKVFNYE---GQYLRQIGG---EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ------LISALESKVKHA  251 (286)
T ss_dssp             GTEEEEEETT---CCEEEEESC---TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC------EEEEEEESSCCS
T ss_pred             CCEEEEEcCC---CCEEEEEcc---CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC------EEEEEcccCCCC
Confidence            9999999975   444444321   12235688999999998888877775 9999996542      233333332  3


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCc
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~  254 (351)
                      .+.+++++|+|+++++ +.|+.|++|++...
T Consensus       252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             cceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            4789999999987776 57999999998543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=7.9e-14  Score=120.50  Aligned_cols=242  Identities=7%  Similarity=-0.041  Sum_probs=147.4

Q ss_pred             CCceEEEEEccCCCceEEEEeeee------cCCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce-
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKG------HTDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN-   74 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~-   74 (351)
                      .+++|.+||..+ .+  .+.++..      +......++++        +++++|+++..  +++|.+||+.+.+.+.. 
T Consensus        79 ~~~~v~v~d~~t-~~--~~~~i~~~~~~~~~g~~p~~i~~s--------pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~  147 (361)
T 2oiz_A           79 RSDVVEVWDADK-LT--FEKEISLPPKRVQGLNYDGLFRQT--------TDGKFIVLQNASPATSIGIVDVAKGDYVEDV  147 (361)
T ss_dssp             EEEEEEEEETTT-CC--EEEEEEECTTBCCBCCCGGGEEEC--------TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECcC-Cc--EEEEEEcCccccccCCCcceEEEC--------CCCCEEEEECCCCCCeEEEEECCCCcEEEEE
Confidence            477899999987 53  3344432      23456789999        88999998864  58999999998866544 


Q ss_pred             eecccc--------cceeeeEeeecCCeEEecCC-ceeEE-EEE---eccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           75 TQSTYR--------KEVISLASYIEGPVLVAGSS-SYQVS-VES---LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        75 ~~~~~~--------~~~~~~~~~~~~~~l~~~~~-~~~~~-~~~---~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      +.....        ....-+..+++|.++..... ++.+. ...   .+..+..++ .+.+.      +++..      +
T Consensus       148 i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~------~~g~~------~  214 (361)
T 2oiz_A          148 TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPA------LDKDK------A  214 (361)
T ss_dssp             GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCE------ECSSE------E
T ss_pred             ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEec------ccCCE------E
Confidence            322110        00122334444444433211 11111 000   011111111 11122      34444      6


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEee-----------CCeEEEEEcc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGY-----------GGAFHLWRNV  205 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~-----------dg~i~~~d~~  205 (351)
                      +..+.++.|.++|+..........+.+..     ..........++|+|+++.++++..           .+.|.+||+.
T Consensus       215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~  294 (361)
T 2oiz_A          215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK  294 (361)
T ss_dssp             EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT
T ss_pred             EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC
Confidence            66778899999999763222222222110     0000111123689999988887654           3589999998


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCc--cccccCccceEEeccccccccceeEEEEe
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN--VASLMGENSWHEVARPQVHGHDINCVTII  283 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (351)
                      +.     +.+.++..+.  +.+++|+|+|++|++++. +.|.+||..++  +          .+..+..++.....++++
T Consensus       295 t~-----~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~----------~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          295 TK-----QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK----------LLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             TT-----EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE----------EEEEETTSCSSEEEEEEC
T ss_pred             CC-----cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce----------eeEEeccCCCCcEEEEec
Confidence            87     4577777666  899999999999998886 99999999887  5          555544566678889999


Q ss_pred             eeCCCc
Q 048511          284 QGKGNH  289 (351)
Q Consensus       284 ~~~~~~  289 (351)
                      |  +|.
T Consensus       357 p--~G~  360 (361)
T 2oiz_A          357 P--VGG  360 (361)
T ss_dssp             C--CSC
T ss_pred             C--CCC
Confidence            8  664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.1e-14  Score=125.63  Aligned_cols=250  Identities=9%  Similarity=-0.010  Sum_probs=148.6

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCc-eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc--c
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDW-IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR--K   81 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~   81 (351)
                      +..|.+||+.+ ++..   .+..+... ...+.|+        +++++|+.++.++.|.+||+.+++..........  .
T Consensus        59 ~~~l~~~d~~~-~~~~---~l~~~~~~~~~~~~~s--------pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  126 (396)
T 3c5m_A           59 NRNYYLLNLET-QQAV---QLTEGKGDNTFGGFIS--------TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG  126 (396)
T ss_dssp             SCEEEEEETTT-TEEE---ECCCSSCBCTTTCEEC--------TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE
T ss_pred             CceEEEEECCC-CcEE---EeecCCCCccccceEC--------CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCC
Confidence            34688888887 6432   23333333 3347899        8899999999999999999987754332221110  0


Q ss_pred             ceee----------------eEeeecCCeEEec-----CCceeEEEEE-------eccccccceEEEEecCCCCCCC-CC
Q 048511           82 EVIS----------------LASYIEGPVLVAG-----SSSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPS-DG  132 (351)
Q Consensus        82 ~~~~----------------~~~~~~~~~l~~~-----~~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~-~~  132 (351)
                      ....                ..++|+++.++..     .....+.++.       .+..+...+..+.|+      + ++
T Consensus       127 ~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s------p~dg  200 (396)
T 3c5m_A          127 YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR------PFDD  200 (396)
T ss_dssp             EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE------TTEE
T ss_pred             CCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC------CCCC
Confidence            0001                2345555544432     2223333222       122355678889999      6 67


Q ss_pred             cccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEE
Q 048511          133 VSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHL  201 (351)
Q Consensus       133 ~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~  201 (351)
                      ..      |+..+.+      ..|.+||+..  +... .+.  . ......+..++|+|+++.|+.++.+     +.|++
T Consensus       201 ~~------l~~~~~~~~~~~~~~l~~~d~~~--~~~~-~l~--~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          201 ST------VGFCHEGPHDLVDARMWLVNEDG--SNVR-KIK--E-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EE------EEEEECSCSSSCSCCCEEEETTS--CCCE-ESS--C-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             CE------EEEEecCCCCCCCceEEEEECCC--Ccee-Eee--c-cCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            76      6665543      3588888765  3221 111  1 0112357889999999988777654     45999


Q ss_pred             EEcccCcccCcccccccccccccEEEEEeec-CCCEEEEEe----------------CCCcEEEEcCCCccccccCccce
Q 048511          202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSR-SSDYLLSVS----------------HDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~----------------~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      ||+.+++.   ..+..+.   . .. +.|+| +|+++++++                .+..|++||+.++..     .  
T Consensus       269 ~d~~~g~~---~~l~~~~---~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~--  333 (396)
T 3c5m_A          269 ANPETLEN---EEVMVMP---P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----Q--  333 (396)
T ss_dssp             ECTTTCCE---EEEEECC---S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-----C--
T ss_pred             EECCCCCe---EEeeeCC---C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----E--
Confidence            99987642   1122222   1 23 88999 999888754                347899999977652     1  


Q ss_pred             EEecccccccc-----------ceeEEEEeeeCCCcEEEEec-CCCeEEEEec
Q 048511          265 HEVARPQVHGH-----------DINCVTIIQGKGNHRFVSGA-DEKVARVFEA  305 (351)
Q Consensus       265 ~~~~~~~~~~~-----------~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~  305 (351)
                       .+.   .+..           .+..++|+|  ++..|+..+ .++...||.+
T Consensus       334 -~l~---~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          334 -KLC---KHSTSWDVLDGDRQITHPHPSFTP--NDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             -EEE---ECCCCCCCBTTBSSTTCCCCEECT--TSSEEEEEECTTSSCEEEEE
T ss_pred             -Ecc---CCCCccccccccccCCCCCceEcc--CCCeEEEEecCCCCceEEEE
Confidence             111   1211           256678999  888777665 4566556654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=3.3e-13  Score=111.58  Aligned_cols=222  Identities=6%  Similarity=-0.022  Sum_probs=148.0

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ..++.|.+|+... +...  .....+...+.+|++.        ++++++++.. ++.|.+||........ .       
T Consensus        43 ~~~~~i~~~~~~~-~~~~--~~~~~~~~~p~~i~~~--------~~g~l~v~~~-~~~i~~~d~~~~~~~~-~-------  102 (270)
T 1rwi_B           43 GMYGRVVKLATGS-TGTT--VLPFNGLYQPQGLAVD--------GAGTVYVTDF-NNRVVTLAAGSNNQTV-L-------  102 (270)
T ss_dssp             SSSCEEEEECC------E--ECCCCSCCSCCCEEEC--------TTCCEEEEET-TTEEEEECTTCSCCEE-C-------
T ss_pred             CCCCcEEEecCCC-cccc--eEeeCCcCCcceeEEC--------CCCCEEEEcC-CCEEEEEeCCCceEee-e-------
Confidence            4567888888765 3211  1112334568889999        7787666655 8899999976543210 0       


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW  162 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  162 (351)
                                                 .......+..+++.      +++++      +++...++.|.+|+...  ...
T Consensus       103 ---------------------------~~~~~~~p~~i~~~------~~g~l------~v~~~~~~~i~~~~~~~--~~~  141 (270)
T 1rwi_B          103 ---------------------------PFDGLNYPEGLAVD------TQGAV------YVADRGNNRVVKLAAGS--KTQ  141 (270)
T ss_dssp             ---------------------------CCCSCSSEEEEEEC------TTCCE------EEEEGGGTEEEEECTTC--CSC
T ss_pred             ---------------------------ecCCcCCCcceEEC------CCCCE------EEEECCCCEEEEEECCC--cee
Confidence                                       01122457899999      67777      88777888999997654  222


Q ss_pred             EEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC
Q 048511          163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH  242 (351)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~  242 (351)
                      ... .    ......+..++++++++.+++...++.|.+||......     ......+...+.+++++++|.++++...
T Consensus       142 ~~~-~----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          142 TVL-P----FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVLPFTDITAPWGIAVDEAGTVYVTEHN  211 (270)
T ss_dssp             EEC-C----CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred             Eee-c----cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-----EeecccCCCCceEEEECCCCCEEEEECC
Confidence            111 1    12223567899999998777666788999999876531     1122223356889999999987777777


Q ss_pred             CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ++.|.+||......         .. ....+...+.++++++  ++.++++...++.|+++++..
T Consensus       212 ~~~v~~~~~~~~~~---------~~-~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          212 TNQVVKLLAGSTTS---------TV-LPFTGLNTPLAVAVDS--DRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             TSCEEEECTTCSCC---------EE-CCCCSCSCEEEEEECT--TCCEEEEEGGGTEEEEECCCG
T ss_pred             CCcEEEEcCCCCcc---------ee-eccCCCCCceeEEECC--CCCEEEEECCCCEEEEEcCCC
Confidence            89999999865431         11 1112234588999998  888999999999999999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=1.2e-13  Score=116.12  Aligned_cols=221  Identities=10%  Similarity=-0.008  Sum_probs=141.4

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +..++.|..|+..+ +    ...+..+...+.+++++        ++++++++...++.|.+||..+++.......    
T Consensus        46 ~~~~~~i~~~~~~~-~----~~~~~~~~~~~~~l~~~--------~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~----  108 (296)
T 3e5z_A           46 DVRQNRTWAWSDDG-Q----LSPEMHPSHHQNGHCLN--------KQGHLIACSHGLRRLERQREPGGEWESIADS----  108 (296)
T ss_dssp             EGGGTEEEEEETTS-C----EEEEESSCSSEEEEEEC--------TTCCEEEEETTTTEEEEECSTTCCEEEEECE----
T ss_pred             eCCCCEEEEEECCC-C----eEEEECCCCCcceeeEC--------CCCcEEEEecCCCeEEEEcCCCCcEEEEeec----
Confidence            34678899999987 4    23455577789999999        8888888777778999999876643211100    


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEE----eec-----------
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS----ASM-----------  146 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s----~~~-----------  146 (351)
                                                 ........+..+++.      ++|++      +++    |+.           
T Consensus       109 ---------------------------~~~~~~~~~~~i~~d------~~G~l------~vtd~~~g~~~~~~~~~~~~~  149 (296)
T 3e5z_A          109 ---------------------------FEGKKLNSPNDVCLA------PDGSL------WFSDPTYGIDKPEEGYGGEME  149 (296)
T ss_dssp             ---------------------------ETTEECCCCCCEEEC------TTSCE------EEEECSHHHHCGGGSSCCCCC
T ss_pred             ---------------------------cCCCCCCCCCCEEEC------CCCCE------EEECCcccccccccccccccc
Confidence                                       000112345678888      67777      776    321           


Q ss_pred             --CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcc-cCcccCcccccccccccc
Q 048511          147 --DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNV-GVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       147 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~~  223 (351)
                        .+.|..++..   +.. ..+.     ........++|+|+++.+++...++.|.+|++. .+...  .....+..+..
T Consensus       150 ~~~~~l~~~~~~---g~~-~~~~-----~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~  218 (296)
T 3e5z_A          150 LPGRWVFRLAPD---GTL-SAPI-----RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPG  218 (296)
T ss_dssp             SSSCEEEEECTT---SCE-EEEE-----CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSS
T ss_pred             CCCcEEEEECCC---CCE-EEee-----cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCC
Confidence              2345445443   222 2222     334456889999999988777778999999996 33210  00111123455


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcEEEEecCCCeEEE
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~s~~~dg~v~v  302 (351)
                      .+.+++++++|+++++.  ++.|.+||.. ++          .+..+..+.. +++++|. +  +++.|.+++.++. .-
T Consensus       219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~----------~~~~~~~~~~-~~~~~f~~~--d~~~L~v~t~~~l-~~  281 (296)
T 3e5z_A          219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GD----------ELGRVLTPQT-TSNLCFGGP--EGRTLYMTVSTEF-WS  281 (296)
T ss_dssp             CCCSEEEBTTSCEEEEE--TTEEEEECTT-SC----------EEEEEECSSC-CCEEEEEST--TSCEEEEEETTEE-EE
T ss_pred             CCCeEEECCCCCEEEEc--CCeEEEECCC-CC----------EEEEEECCCC-ceeEEEECC--CCCEEEEEcCCeE-EE
Confidence            67789999999877665  7899999986 33          2333334445 8999995 5  7777877777643 33


Q ss_pred             EecC
Q 048511          303 FEAP  306 (351)
Q Consensus       303 w~~~  306 (351)
                      ++..
T Consensus       282 ~~~~  285 (296)
T 3e5z_A          282 IETN  285 (296)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            3444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=6.9e-13  Score=113.29  Aligned_cols=233  Identities=9%  Similarity=0.005  Sum_probs=153.6

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      +.++.++.|.    +  .....+..+...+.+++|+        +++++++++..++.|.+||..+++....        
T Consensus        24 ~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~--------~~g~l~~~~~~~~~i~~~d~~~~~~~~~--------   81 (333)
T 2dg1_A           24 ISESELQTIT----A--EPWLEISKKGLQLEGLNFD--------RQGQLFLLDVFEGNIFKINPETKEIKRP--------   81 (333)
T ss_dssp             CCGGGSCEEE----C--EEEEEEESSCCCEEEEEEC--------TTSCEEEEETTTCEEEEECTTTCCEEEE--------
T ss_pred             eecccCcccc----c--ceeEEEeccCccccCcEEC--------CCCCEEEEECCCCEEEEEeCCCCcEEEE--------
Confidence            3466777782    2  3345666677788999999        7888888888899999999876543210        


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC----CeEEEEeccCC
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----KTMMIWQPEKT  158 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~  158 (351)
                                                 ...+...+.+++++      +++++      +++...+    +.|.+||... 
T Consensus        82 ---------------------------~~~~~~~~~~i~~~------~dg~l------~v~~~~~~~~~~~i~~~d~~~-  121 (333)
T 2dg1_A           82 ---------------------------FVSHKANPAAIKIH------KDGRL------FVCYLGDFKSTGGIFAATENG-  121 (333)
T ss_dssp             ---------------------------EECSSSSEEEEEEC------TTSCE------EEEECTTSSSCCEEEEECTTS-
T ss_pred             ---------------------------eeCCCCCcceEEEC------CCCcE------EEEeCCCCCCCceEEEEeCCC-
Confidence                                       11244679999999      78877      7776666    6899999887 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------CCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                       +.....+.  . ......+..++++|+++++++...      .+.|..+|..+++      ...+......+..++|+|
T Consensus       122 -~~~~~~~~--~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          122 -DNLQDIIE--D-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT------VTPIIQNISVANGIALST  191 (333)
T ss_dssp             -CSCEEEEC--S-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC------EEEEEEEESSEEEEEECT
T ss_pred             -CEEEEEEc--c-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE------EEEeecCCCcccceEECC
Confidence             43322221  0 123456899999999987776553      2556666655432      122222334578899999


Q ss_pred             CCCEEE-EEeCCCcEEEEcCCCc-cccccCccce--EEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          233 SSDYLL-SVSHDQTTRVFAPWKN-VASLMGENSW--HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       233 ~~~~l~-s~~~dg~i~vwd~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                      ++++|+ +.+.++.|.+||+... ...    ..+  .....+..+ ..+..+++++  ++.++++...++.|.+|+.+++
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~~~~~~~-~~~~~i~~d~--~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTI----QPFGATIPYYFTGH-EGPDSCCIDS--DDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEEEECCSS-SEEEEEEEBT--TCCEEEEEETTTEEEEECTTSC
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCc----ccccceEEEecCCC-CCCCceEECC--CCCEEEEEcCCCEEEEECCCCC
Confidence            998654 4456789999998642 200    001  011111122 3578899998  8888888888899999998776


Q ss_pred             hhhcee
Q 048511          309 FLKTLN  314 (351)
Q Consensus       309 ~~~~~~  314 (351)
                      .+..+.
T Consensus       265 ~~~~~~  270 (333)
T 2dg1_A          265 PIGQIL  270 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            655553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=3.5e-13  Score=115.72  Aligned_cols=233  Identities=13%  Similarity=0.077  Sum_probs=149.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---Cc--EEEEecCCCcccceeecc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KV--IRIWKLALRGSSANTQST   78 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~--i~iwd~~~~~~~~~~~~~   78 (351)
                      .++.|.+||+.+ ++...+       ..+..+.|+        |+|++|+.++.+   +.  |.+|++.+++....... 
T Consensus        41 ~~~~l~~~d~~~-~~~~~l-------~~~~~~~~S--------pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-  103 (347)
T 2gop_A           41 YENTIVIENLKN-NARRFI-------ENATMPRIS--------PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-  103 (347)
T ss_dssp             EEEEEEEEETTT-CCEEEE-------ESCEEEEEC--------TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-
T ss_pred             ccceEEEEeCCC-CceEEc-------ccCCCeEEC--------CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-
Confidence            367899999988 654332       468899999        889999888754   33  77778876654333222 


Q ss_pred             cccceeeeEeeecCCeEEecCC---------------------------ceeEEEEEe--------ccccccceEEEEec
Q 048511           79 YRKEVISLASYIEGPVLVAGSS---------------------------SYQVSVESL--------LIGHEDWVYSVQWE  123 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~---------------------------~~~~~~~~~--------~~~h~~~v~~l~~~  123 (351)
                       .. +..+.|+|+|+.|+....                           ...+.++..        +.. . .+..+.|+
T Consensus       104 -~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s  179 (347)
T 2gop_A          104 -KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH  179 (347)
T ss_dssp             -SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE
T ss_pred             -CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC
Confidence             12 778899999998877542                           123333221        111 2 56678899


Q ss_pred             CCCCCCCCCcccCCCceeEEeecCC-------eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC
Q 048511          124 PPSTAPSDGVSCQQPSSILSASMDK-------TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG  196 (351)
Q Consensus       124 p~~~~~~~~~~~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d  196 (351)
                            +++ +      ++++..+.       ...||.+..  +.... +.     .+ ..+..+  +|+|+.|+.++.+
T Consensus       180 ------pdg-~------~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~-l~-----~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          180 ------RDK-I------VVNVPHREIIPQYFKFWDIYIWED--GKEEK-MF-----EK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             ------TTE-E------EEEEECCCSSCCSSCCEEEEEEET--TEEEE-EE-----EE-ESEEEE--EECSSCEEEEECC
T ss_pred             ------CCe-E------EEEEecccccccccccccEEEeCC--CceEE-ec-----cC-cceeeE--CCCCCEEEEEEcc
Confidence                  788 7      88876542       445555543  44332 22     12 334444  9999988877744


Q ss_pred             --------CeEEEEEcccCcccCcccccccccccccEEE-EEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEe
Q 048511          197 --------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD-ISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV  267 (351)
Q Consensus       197 --------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  267 (351)
                              ..|.+||  ++     ........+...+.. +.|+ ++ ++++++.++.++|| +.+++        ...+
T Consensus       236 ~~~~~~~~~~l~~~d--~~-----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~--------~~~~  297 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GK-----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE--------IKPI  297 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SS-----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--------EEEE
T ss_pred             ccCCccccceEEEEC--CC-----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--------eEEE
Confidence                    4688888  43     223334456677886 8999 88 88999999999999 87432        1122


Q ss_pred             ccccccccceeEEEEeeeCCCcEEEEecCCCeE-EEEecC
Q 048511          268 ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVA-RVFEAP  306 (351)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v-~vw~~~  306 (351)
                         ..+...|.+++|++    .++++++.++.. .||.++
T Consensus       298 ---~~~~~~v~~~~~s~----~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          298 ---AKGRHWIMGFDVDE----IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ---ECSSSEEEEEEESS----SEEEEEECSSSCCEEEEES
T ss_pred             ---ecCCCeEEeeeeeC----cEEEEEcCCCChHHheEeC
Confidence               12355688888875    566676666654 777765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=1.4e-12  Score=123.03  Aligned_cols=236  Identities=10%  Similarity=0.000  Sum_probs=153.2

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCCC-----cEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-----VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      |...+..++|+        |+|++||.++.++     .|++||+.+++........  .....++|+|||+.|+.+..+.
T Consensus       123 ~~~~~~~~~~S--------PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          123 GTVALRGYAFS--------EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             SCEEEEEEEEC--------TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCC
T ss_pred             CCEEEEEEEEC--------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECC
Confidence            44468899999        8899998776543     8999999988765432211  1245789999999888754432


Q ss_pred             e----------------EEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCe
Q 048511          103 Q----------------VSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKT  149 (351)
Q Consensus       103 ~----------------~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~  149 (351)
                      .                +..+..            ...|...+..+.|+      +|+++      |+.++.     +..
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S------pDg~~------l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS------DDGRY------VLLSIREGCDPVNR  260 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC------TTSCE------EEEEEECSSSSCCE
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc------CCCCE------EEEEEEccCCCccE
Confidence            2                433321            11134457789999      78888      877765     578


Q ss_pred             EEEEeccC------CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccc
Q 048511          150 MMIWQPEK------TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       150 i~iwd~~~------~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      |.+||+..      ... ....+.     .+...+.. .|+|+|..|+..+..    +.|.+||+.++...   ....+.
T Consensus       261 l~~~d~~~~~~~~~~~~-~~~~l~-----~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~  330 (710)
T 2xdw_A          261 LWYCDLQQESNGITGIL-KWVKLI-----DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLV  330 (710)
T ss_dssp             EEEEEGGGSSSSSCSSC-CCEEEE-----CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEE
T ss_pred             EEEEECcccccccCCcc-ceEEee-----CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceecc
Confidence            99999975      211 223333     23333333 478898887766653    36999999775321   123344


Q ss_pred             cccc--cEEEEEeecCCCEEEEEeCCCc--EEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE-E-
Q 048511          220 GHFA--AVMDISWSRSSDYLLSVSHDQT--TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-S-  293 (351)
Q Consensus       220 ~~~~--~v~~v~~sp~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s-  293 (351)
                      .|..  .+..++|++++.++++...|+.  |++||+.+++          .+..+..+...+..+++++  ++..++ + 
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----------~~~~l~~~~~~v~~~~~s~--d~~~l~~~~  398 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----------LLKIFPLEVGSVVGYSGQK--KDTEIFYQF  398 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----------EEEEECCCSSEEEEEECCT--TCSEEEEEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----------EEEecCCCCceEEEEecCC--CCCEEEEEE
Confidence            4433  6888999988888888888885  5566765554          2222334456688888888  665554 3 


Q ss_pred             --ecCCCeEEEEecCc
Q 048511          294 --GADEKVARVFEAPL  307 (351)
Q Consensus       294 --~~~dg~v~vw~~~~  307 (351)
                        ....+.|++||+..
T Consensus       399 ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          399 TSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             ECSSCCCEEEEEETTS
T ss_pred             eCCCCCCEEEEEECCC
Confidence              23567999999873

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.58  E-value=4e-13  Score=114.64  Aligned_cols=215  Identities=10%  Similarity=0.004  Sum_probs=151.2

Q ss_pred             CceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCc-ccceee------
Q 048511            5 DNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRG-SSANTQ------   76 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~------   76 (351)
                      +++|.+||..+ +++.  ..+. ++-.....|+++        ++++++++...++.|++|+..... .+..+.      
T Consensus        68 ~~~i~~~d~~~-g~~~--~~~~~~~~~~p~gia~d--------~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g  136 (329)
T 3fvz_A           68 EDTILVIDPNN-AEIL--QSSGKNLFYLPHGLSID--------TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG  136 (329)
T ss_dssp             SCCEEEECTTT-CCEE--EEECTTTCSSEEEEEEC--------TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred             CCcEEEEECCC-CeEE--eccCCCccCCceEEEEC--------CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence            36899999987 6542  2332 455678999999        889988888889999999986542 222221      


Q ss_pred             --cccccceeeeEeee-cCCeEEecC-CceeEEEEE-------ecc----------ccccceEEEEecCCCCCCCC-Ccc
Q 048511           77 --STYRKEVISLASYI-EGPVLVAGS-SSYQVSVES-------LLI----------GHEDWVYSVQWEPPSTAPSD-GVS  134 (351)
Q Consensus        77 --~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~~~-------~~~----------~h~~~v~~l~~~p~~~~~~~-~~~  134 (351)
                        .........+++++ ++.++++.. ....+..+.       .+.          ++-.....++++      ++ +.+
T Consensus       137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d------~~~g~l  210 (329)
T 3fvz_A          137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV------PHLDQL  210 (329)
T ss_dssp             CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE------TTTTEE
T ss_pred             CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE------CCCCEE
Confidence              11223577899999 777777764 466664433       121          122347899999      56 777


Q ss_pred             cCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE-------EeeCCeEEEEEcccC
Q 048511          135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA-------HGYGGAFHLWRNVGV  207 (351)
Q Consensus       135 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-------~~~dg~i~~~d~~~~  207 (351)
                            +++...++.|++||..+  ++.+..+..   ..+...+..++++| +..+.+       ...+..|++||+.++
T Consensus       211 ------~v~d~~~~~I~~~~~~~--G~~~~~~~~---~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g  278 (329)
T 3fvz_A          211 ------CVADRENGRIQCFKTDT--KEFVREIKH---ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG  278 (329)
T ss_dssp             ------EEEETTTTEEEEEETTT--CCEEEEECC---TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred             ------EEEECCCCEEEEEECCC--CcEEEEEec---cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence                  88888899999999987  776666542   23455688999999 333333       233458999998876


Q ss_pred             cccCccccccc---ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          208 DIDNWQPQKVP---SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       208 ~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +     .+..+   .++...+.+|+++|+|.++++...++.|++|++..
T Consensus       279 ~-----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          279 E-----IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             C-----EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             e-----EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            3     34444   35667789999999998888888899999999743

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=2.5e-13  Score=118.73  Aligned_cols=254  Identities=11%  Similarity=0.006  Sum_probs=152.2

Q ss_pred             EEccCCCceEEEEeeeecCCc-----eeEEEeeCCcccCCCCCccEEEEeeCC---CcEEEEecCCCcccceeecccccc
Q 048511           11 YRGQRTGKFVRACELKGHTDW-----IRSLDFSLPVCTSGEAISILLVSSSQD---KVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus        11 w~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      .|..+ ++  .+..+..+...     +..++|+        |+|++|+.....   ..|.+||+.+++..... ......
T Consensus        15 ~d~~~-g~--~~~~l~~~~~~~~~~~~~~~~~S--------pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~   82 (396)
T 3c5m_A           15 VDSDT-QV--KVTRLTPTDIICHRNYFYQKCFT--------QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDN   82 (396)
T ss_dssp             ECTTT-CC--EEEECSCTTSCEECCCTTSCCBC--------TTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBC
T ss_pred             ecCCC-Cc--ceEEEecCCCCccceeeecCcCC--------CCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCc
Confidence            35666 53  33455444333     7788999        889998776543   36888898876543221 111111


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEec--------cccccceEE-------------------EEecCCCCCCCCCccc
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLL--------IGHEDWVYS-------------------VQWEPPSTAPSDGVSC  135 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~h~~~v~~-------------------l~~~p~~~~~~~~~~~  135 (351)
                      ...+.|+|+|+.|+....+..+.++..-        ..+......                   +.|+      ++++. 
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s------pdg~~-  155 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ------PLTSW-  155 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC------CCCSH-
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC------CCCcc-
Confidence            2237789999988776655555444321        112222222                   2344      55655 


Q ss_pred             CCCceeEEe-----ecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CCCEEEEEeeC------CeEEEEE
Q 048511          136 QQPSSILSA-----SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DGRSILAHGYG------GAFHLWR  203 (351)
Q Consensus       136 ~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------g~i~~~d  203 (351)
                           ++.+     ..+..|.+||+..  +......      .+...+..+.|+| +++.|+..+.+      ..|.+||
T Consensus       156 -----~~~~~~~~~~~~~~l~~~d~~~--g~~~~~~------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d  222 (396)
T 3c5m_A          156 -----EKFAEFYHTNPTCRLIKVDIET--GELEVIH------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVN  222 (396)
T ss_dssp             -----HHHHHHHHTCCCEEEEEEETTT--CCEEEEE------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEE
T ss_pred             -----eeeeeeccCCCcceEEEEECCC--CcEEeec------cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEE
Confidence                 5544     3566899999987  5443322      2345688999999 78877666543      3688888


Q ss_pred             cccCcccCcccccccccc--cccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccc
Q 048511          204 NVGVDIDNWQPQKVPSGH--FAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                      +.++.      ...+..+  ...+..++|+|+|++|+..+.+     +.|++||+.+++.        ..+.....    
T Consensus       223 ~~~~~------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------~~l~~~~~----  284 (396)
T 3c5m_A          223 EDGSN------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--------EEVMVMPP----  284 (396)
T ss_dssp             TTSCC------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--------EEEEECCS----
T ss_pred             CCCCc------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--------EEeeeCCC----
Confidence            86643      1222222  2357889999999987776543     4599999987652        12222211    


Q ss_pred             eeEEEEeeeCCCcEEEEec----------------CCCeEEEEecCchhhhceeec
Q 048511          277 INCVTIIQGKGNHRFVSGA----------------DEKVARVFEAPLSFLKTLNHA  316 (351)
Q Consensus       277 i~~~~~~~~~~~~~l~s~~----------------~dg~v~vw~~~~~~~~~~~~~  316 (351)
                      .. +.|+| .++.+++.++                .+..|++||+.+..+..+..+
T Consensus       285 ~~-~~~s~-~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (396)
T 3c5m_A          285 CS-HLMSN-FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH  338 (396)
T ss_dssp             EE-EEEEC-SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred             CC-CCccC-CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence            22 77775 3677777654                357899999875444555443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=1.5e-12  Score=109.33  Aligned_cols=217  Identities=11%  Similarity=0.045  Sum_probs=146.8

Q ss_pred             EeeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           23 CELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        23 ~~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ..+..+.....+++|+        ++++ +++++..++.|..|+..++  ..                            
T Consensus        21 ~~l~~~~~~~eg~~~d--------~~g~~l~~~~~~~~~i~~~~~~~~--~~----------------------------   62 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYV--------PARSAVIFSDVRQNRTWAWSDDGQ--LS----------------------------   62 (296)
T ss_dssp             EEEECCCSSEEEEEEE--------GGGTEEEEEEGGGTEEEEEETTSC--EE----------------------------
T ss_pred             EEEecCCccccCCeEe--------CCCCEEEEEeCCCCEEEEEECCCC--eE----------------------------
Confidence            3444566678899999        7887 7888888999999998765  21                            


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEE
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGG  181 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i  181 (351)
                             .+..+...+.+++++      +++++      +++...++.|.+||..+  +........ ........+..+
T Consensus        63 -------~~~~~~~~~~~l~~~------~dg~l------~v~~~~~~~i~~~d~~~--g~~~~~~~~-~~~~~~~~~~~i  120 (296)
T 3e5z_A           63 -------PEMHPSHHQNGHCLN------KQGHL------IACSHGLRRLERQREPG--GEWESIADS-FEGKKLNSPNDV  120 (296)
T ss_dssp             -------EEESSCSSEEEEEEC------TTCCE------EEEETTTTEEEEECSTT--CCEEEEECE-ETTEECCCCCCE
T ss_pred             -------EEECCCCCcceeeEC------CCCcE------EEEecCCCeEEEEcCCC--CcEEEEeec-cCCCCCCCCCCE
Confidence                   112245668899999      78887      87777778999999977  543322211 011112346789


Q ss_pred             EEcCCCCEEEEE----ee-------------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511          182 HWSPDGRSILAH----GY-------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       182 ~~~~~~~~l~~~----~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      +++|+|+++++.    ..             .+.|..++.. ++      +..+..+......++|+|+++.|++.+.++
T Consensus       121 ~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~  193 (296)
T 3e5z_A          121 CLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN  193 (296)
T ss_dssp             EECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC------EEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred             EECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC------EEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence            999999988873    21             3456666554 22      223334556678999999999987777789


Q ss_pred             cEEEEcCC-CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhceeecc
Q 048511          245 TTRVFAPW-KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAT  317 (351)
Q Consensus       245 ~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~  317 (351)
                      .|++||+. .+...    .....+   ..+...+..+++++  +++++++.  ++.|.+|+..++.+..+....
T Consensus       194 ~i~~~~~~~~g~~~----~~~~~~---~~~~~~p~~i~~d~--~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~  256 (296)
T 3e5z_A          194 ATHRYCLNARGETE----YQGVHF---TVEPGKTDGLRVDA--GGLIWASA--GDGVHVLTPDGDELGRVLTPQ  256 (296)
T ss_dssp             EEEEEEECSSSCEE----EEEEEE---CCSSSCCCSEEEBT--TSCEEEEE--TTEEEEECTTSCEEEEEECSS
T ss_pred             eEEEEEECCCCcCc----CCCeEe---eCCCCCCCeEEECC--CCCEEEEc--CCeEEEECCCCCEEEEEECCC
Confidence            99999987 33210    001122   22444577899998  88877776  789999999887776665443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=1.8e-12  Score=121.96  Aligned_cols=242  Identities=9%  Similarity=-0.042  Sum_probs=152.1

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEE-----EeeCCCcEEEEecCCCccc-ceeecccccceeeeEeeecCCeEEecCC
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLV-----SSSQDKVIRIWKLALRGSS-ANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~-----t~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      +|...+..++|+        |+|++||     .|+.+.+|++||+.+++.. .....  ......++|+|+|+.|+....
T Consensus       118 ~~~~~~~~~~~S--------PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          118 DGTVSLGTWAVS--------WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             SSCEEEEEEEEC--------TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEEC
T ss_pred             CCCEEEEEEEEC--------CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEe
Confidence            455678999999        8899998     4455678999999988764 21111  111267899999998887654


Q ss_pred             cee-------------EEEEEe------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC----eEE
Q 048511          101 SYQ-------------VSVESL------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK----TMM  151 (351)
Q Consensus       101 ~~~-------------~~~~~~------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~----~i~  151 (351)
                      +..             +..+..            ...|...+..+.|+      +||++      |+.++.++    .|.
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S------pDG~~------l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS------RDGKY------LFVYILRGWSENDVY  255 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC------TTSCC------EEEEEEETTTEEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC------CCCCE------EEEEEeCCCCceEEE
Confidence            322             433321            12244578899999      78988      88877766    667


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe---eCCeEEEEEcccCcccCcccccccccc--cccEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGH--FAAVM  226 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~v~  226 (351)
                      +||...  +... .+.     .+...+....+ +++.+++.+.   .++.|.+||+.++....   ...+..+  ...+.
T Consensus       256 ~~~~~~--~~~~-~l~-----~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          256 WKRPGE--KDFR-LLV-----KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS---WKEIVPEDSSASLL  323 (695)
T ss_dssp             EECTTC--SSCE-EEE-----ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG---CEEEECCCSSCEEE
T ss_pred             EEcCCC--CceE-Eee-----cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC---CeEEecCCCCCeEE
Confidence            776544  4332 222     22334455556 5666444433   25889999997753211   1222222  44678


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCC-ccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEE----EecCCCeE
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWK-NVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFV----SGADEKVA  300 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~----s~~~dg~v  300 (351)
                      .++|+ ++.++++...|+..+||.+.. +.          ....+..+ ...+..+++++  ++..++    +....+.|
T Consensus       324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~----------~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~v  390 (695)
T 2bkl_A          324 SVSIV-GGHLSLEYLKDATSEVRVATLKGK----------PVRTVQLPGVGAASNLMGLE--DLDDAYYVFTSFTTPRQI  390 (695)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEEETTCC----------EEEECCCSSSSEECCCBSCT--TCSEEEEEEEETTEEEEE
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEEEeCCCC----------eeEEecCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEE
Confidence            88888 667888888999888886642 22          12222233 44577888888  676666    44456889


Q ss_pred             EEEecCchhhhceee
Q 048511          301 RVFEAPLSFLKTLNH  315 (351)
Q Consensus       301 ~vw~~~~~~~~~~~~  315 (351)
                      ++||+.......+..
T Consensus       391 ~~~d~~~g~~~~l~~  405 (695)
T 2bkl_A          391 YKTSVSTGKSELWAK  405 (695)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEec
Confidence            999987433444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=2.9e-11  Score=101.23  Aligned_cols=239  Identities=9%  Similarity=0.011  Sum_probs=161.3

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      .+..+...+.++++.        +++.++++...++.|.+||.. +.............+..+++.++|.++++....+.
T Consensus         9 ~~~~~~~~~~~i~~d--------~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~   79 (299)
T 2z2n_A            9 NLTNQDTGPYGITVS--------DKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANK   79 (299)
T ss_dssp             ECCSSSCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             cCCCcCCCccceEEC--------CCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCe
Confidence            344456789999999        788887776668899999987 43322111112346778888899888777554443


Q ss_pred             EEEEE------e--ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          104 VSVES------L--LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       104 ~~~~~------~--~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +..+.      .  +......+.++++.      +++.+      +++...++.|..||. .  +.... +.   .....
T Consensus        80 i~~~~~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~d~-~--g~~~~-~~---~~~~~  140 (299)
T 2z2n_A           80 IGRITKKGIIKEYTLPNPDSAPYGITEG------PNGDI------WFTEMNGNRIGRITD-D--GKIRE-YE---LPNKG  140 (299)
T ss_dssp             EEEECTTSCEEEEECSSTTCCEEEEEEC------TTSCE------EEEETTTTEEEEECT-T--CCEEE-EE---CSSTT
T ss_pred             EEEECCCCcEEEEeCCCcCCCceeeEEC------CCCCE------EEEecCCceEEEECC-C--CCEEE-ec---CCCCC
Confidence            33221      1  11234468889998      67777      777777889999998 4  43322 21   11234


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..+..++++++++.+++...++.|..||. +++.   . ...+......+.+++++++++++++...++.|.+||. ++.
T Consensus       141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDI---T-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE---E-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            46889999999987777666789999998 5431   1 1112233456889999999997777767889999998 544


Q ss_pred             ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          256 ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      .        ..+ ....+...+.++++++  ++.++++...++.|.+|+..+
T Consensus       215 ~--------~~~-~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~~g  255 (299)
T 2z2n_A          215 I--------TEF-KIPTPNARPHAITAGA--GIDLWFTEWGANKIGRLTSNN  255 (299)
T ss_dssp             E--------EEE-ECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEEETTT
T ss_pred             E--------EEE-ECCCCCCCceeEEECC--CCCEEEeccCCceEEEECCCC
Confidence            1        111 1223345688999998  788777777889999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=6.8e-11  Score=98.97  Aligned_cols=251  Identities=10%  Similarity=0.010  Sum_probs=162.8

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec-ccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS-TYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~   83 (351)
                      ++.|.+||...  ++.. ..+..+...+.++++.        +++.++++...++.|..|+.. +. ...... .....+
T Consensus        35 ~~~v~~~d~~~--~~~~-~~~~~~~~~~~~i~~~--------~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~  101 (299)
T 2z2n_A           35 ANMISCINLDG--KITE-YPLPTPDAKVMCLTIS--------SDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAP  101 (299)
T ss_dssp             TTEEEEECTTC--CEEE-EECSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCE
T ss_pred             CCcEEEEcCCC--CeEE-ecCCcccCceeeEEEC--------CCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCc
Confidence            56788888763  3322 2233345678999999        788888877778889999976 22 222211 123456


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEe--------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      ..+++.++|.++++......+..+..        ...+...+..+++.      +++.+      +++...++.|..||.
T Consensus       102 ~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~  169 (299)
T 2z2n_A          102 YGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG------SDNAL------WFTENQNNAIGRITE  169 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC------TTSCE------EEEETTTTEEEEECT
T ss_pred             eeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEc------CCCCE------EEEeCCCCEEEEEcC
Confidence            78888888887776544443332221        12234567889998      67776      777667789999998


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                       +  +.... +.   .......+..++++++++.+++...++.|.+||. ++..   . ...+..+...+.+++++++|+
T Consensus       170 -~--g~~~~-~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~~~~g~  237 (299)
T 2z2n_A          170 -S--GDITE-FK---IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI---T-EFKIPTPNARPHAITAGAGID  237 (299)
T ss_dssp             -T--CCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECSTTC
T ss_pred             -C--CcEEE-ee---CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE---E-EEECCCCCCCceeEEECCCCC
Confidence             5  44332 21   1123446789999999987666666889999998 5432   1 112233456789999999998


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ++++...++.|.+||. ++.        +..+. ...+...+.++++ +  ++.++++.. .+.+..++..
T Consensus       238 l~v~~~~~~~i~~~d~-~g~--------~~~~~-~~~~~~~~~~i~~-~--~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          238 LWFTEWGANKIGRLTS-NNI--------IEEYP-IQIKSAEPHGICF-D--GETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             EEEEETTTTEEEEEET-TTE--------EEEEE-CSSSSCCEEEEEE-C--SSCEEEEET-TTEEEEEEEC
T ss_pred             EEEeccCCceEEEECC-CCc--------eEEEe-CCCCCCccceEEe-c--CCCEEEEec-CCcEEEEEcC
Confidence            7776667889999998 332        11221 1233456889999 7  788777766 4556666655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=2.1e-11  Score=104.03  Aligned_cols=221  Identities=10%  Similarity=0.031  Sum_probs=136.7

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC----CcEEEEecCCCcccceeec
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD----KVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~   77 (351)
                      +..++.|.+||.++ ++...+  ...+...+.+++++        ++++++++...+    +.|.+||..++....... 
T Consensus        62 ~~~~~~i~~~d~~~-~~~~~~--~~~~~~~~~~i~~~--------~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~-  129 (333)
T 2dg1_A           62 DVFEGNIFKINPET-KEIKRP--FVSHKANPAAIKIH--------KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE-  129 (333)
T ss_dssp             ETTTCEEEEECTTT-CCEEEE--EECSSSSEEEEEEC--------TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC-
T ss_pred             ECCCCEEEEEeCCC-CcEEEE--eeCCCCCcceEEEC--------CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc-
Confidence            35678899999887 654332  22456789999999        788888877666    689999987654321110 


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec------CCeEE
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM------DKTMM  151 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~------d~~i~  151 (351)
                                                      ...+...+.++.+.      +++++      +++...      .+.|.
T Consensus       130 --------------------------------~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A          130 --------------------------------DLSTAYCIDDMVFD------SKGGF------YFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             --------------------------------SSSSCCCEEEEEEC------TTSCE------EEEECCCBTTBCCEEEE
T ss_pred             --------------------------------cCccCCcccceEEC------CCCCE------EEEeccccccCCCceEE
Confidence                                            01133568899999      67776      666543      24565


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccC-cc-cCc--ccccccccccccEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGV-DI-DNW--QPQKVPSGHFAAVM  226 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~-~~-~~~--~~~~~~~~~~~~v~  226 (351)
                      .+|...  +.... +.     .....+..++|+|+++.++.+ ..++.|.+||+.+. .. ..+  .....+.++ ..+.
T Consensus       166 ~~~~~~--~~~~~-~~-----~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          166 YVSPDF--RTVTP-II-----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             EECTTS--CCEEE-EE-----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             EEeCCC--CEEEE-ee-----cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence            666544  33322 21     122346889999999866555 45789999999642 10 000  000112222 4678


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc---ccccceeEEEEeeeCCCcEEEEecCC
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ---VHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      .++++++|+++++...++.|.+||.. ++       ....+....   +|...+.+++|++  ++..|+.++.+
T Consensus       237 ~i~~d~~G~l~v~~~~~~~v~~~d~~-g~-------~~~~~~~~~~~~g~~~~~~~~~~~~--dg~~L~v~~~~  300 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGRVLVFNKR-GY-------PIGQILIPGRDEGHMLRSTHPQFIP--GTNQLIICSND  300 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTT-SC-------EEEEEECTTGGGTCSCBCCEEEECT--TSCEEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEECCC-CC-------EEEEEEcCCCccccccCcceEEECC--CCCEEEEEeCc
Confidence            89999999988887778999999984 33       111222111   1222588999987  76555544444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=2e-12  Score=107.24  Aligned_cols=198  Identities=14%  Similarity=0.046  Sum_probs=141.1

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccc-cceEEEEecCCC
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHE-DWVYSVQWEPPS  126 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~  126 (351)
                      .+++|++++.|+.|.+||..+++.+....                                   .+. ..+.++.+.   
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-----------------------------------~~~~~~~~~~~~~---   45 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-----------------------------------LEKGWECNSVAAT---   45 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEE-----------------------------------CCTTCCCCEEEEC---
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeC-----------------------------------CCccCCCcCeEEC---
Confidence            36799999999999999998887654433                                   122 357788899   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcc
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNV  205 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~  205 (351)
                         +++++      ++  +.++.|..||. +  ++.+..+..    .....+.++.+.++|+.+++.+. ++.|..+|..
T Consensus        46 ---pdG~i------lv--s~~~~V~~~d~-~--G~~~W~~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~  107 (276)
T 3no2_A           46 ---KAGEI------LF--SYSKGAKMITR-D--GRELWNIAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK  107 (276)
T ss_dssp             ---TTSCE------EE--ECBSEEEEECT-T--SCEEEEEEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT
T ss_pred             ---CCCCE------EE--eCCCCEEEECC-C--CCEEEEEcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeCC
Confidence               78887      77  45788999998 6  666666652    12246788999999999998887 7788888764


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ......+........+......+++.++|+++++...++.|..||.. ++      ..|+.-    .. ..+..+.+.+ 
T Consensus       108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~------~~w~~~----~~-~~~~~~~~~~-  174 (276)
T 3no2_A          108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ------LLNSVK----LS-GTPFSSAFLD-  174 (276)
T ss_dssp             SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC------EEEEEE----CS-SCCCEEEECT-
T ss_pred             CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC------EEEEEE----CC-CCccceeEcC-
Confidence            32211111101111222345567789999999999999999999987 65      233322    22 2355677777 


Q ss_pred             CCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          286 KGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                       +++++++++.+++|..+|.. ++.+..+..
T Consensus       175 -~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          175 -NGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             -TSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             -CCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence             89999999999999999988 888877763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=3e-11  Score=102.01  Aligned_cols=237  Identities=11%  Similarity=0.045  Sum_probs=151.8

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEE-------eeCCCcEEEEecCCCcccceee---cccccceeeeEeeec-CCeEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVS-------SSQDKVIRIWKLALRGSSANTQ---STYRKEVISLASYIE-GPVLV   96 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t-------~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~   96 (351)
                      .-....+++|.        +++.++++       ...++.|.+||..+++......   ......+..+++.++ +.+++
T Consensus        16 ~~~~~~~~~~~--------~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v   87 (314)
T 1pjx_A           16 DIPGAEGPVFD--------KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CCTTCEEEEEC--------TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             cCCCccCceEC--------CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence            34567899999        78888888       6778999999987765432111   012345778889998 77666


Q ss_pred             ecCCceeEEEEE------ec-c----c-cccceEEEEecCCCCCCCCCcccCCCceeEEeecC---------------Ce
Q 048511           97 AGSSSYQVSVES------LL-I----G-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---------------KT  149 (351)
Q Consensus        97 ~~~~~~~~~~~~------~~-~----~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---------------~~  149 (351)
                      +.... .+..+.      .+ .    + ....+.++++.      +++++      +++...+               +.
T Consensus        88 ~~~~~-~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           88 ADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD------YEGNL------WITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             EETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC------TTSCE------EEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             EECCC-CEEEEeCCCCEEEEEeccCCCccccCCcCEEEC------CCCCE------EEEecCcccccccccccccCCCCe
Confidence            54433 222221      11 1    1 11347789998      67776      7666554               45


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEc----CCCCEEEEE-eeCCeEEEEEcc-cCcccCccccccccccc-
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS----PDGRSILAH-GYGGAFHLWRNV-GVDIDNWQPQKVPSGHF-  222 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~-~~dg~i~~~d~~-~~~~~~~~~~~~~~~~~-  222 (351)
                      |..||..   +......      ........++|+    |+++.++++ ..++.|.+||+. .+..........+..+. 
T Consensus       155 l~~~~~~---g~~~~~~------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          155 IYCFTTD---GQMIQVD------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             EEEECTT---SCEEEEE------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             EEEECCC---CCEEEec------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence            6666654   2222211      122345788999    999766655 467899999986 33211011223333343 


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEE
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVAR  301 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~  301 (351)
                      ..+..++++++|+++++...++.|.+||..+++          .+..+..+...+.+++|++  +++ ++++...++.|.
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~----------~~~~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ----------PKMRIRCPFEKPSNLHFKP--QTKTIFVTEHENNAVW  293 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS----------CSEEEECSSSCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc----------EeEEEeCCCCCceeEEECC--CCCEEEEEeCCCCeEE
Confidence            567889999999988887788999999987554          1112223445689999988  787 556666778999


Q ss_pred             EEecC
Q 048511          302 VFEAP  306 (351)
Q Consensus       302 vw~~~  306 (351)
                      .|++.
T Consensus       294 ~~~~~  298 (314)
T 1pjx_A          294 KFEWQ  298 (314)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            99975

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=5e-11  Score=108.44  Aligned_cols=267  Identities=11%  Similarity=0.054  Sum_probs=167.3

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecC--CCcccceeecccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA--LRGSSANTQSTYR   80 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~~~~   80 (351)
                      ..+++|.++|..+ ++  .+.++.. ...+..+.|+        ++++++++++.|+.|.+||+.  +.+....+..  .
T Consensus       174 ~~~~~V~viD~~t-~~--v~~~i~~-g~~p~~v~~S--------pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G  239 (567)
T 1qks_A          174 RDAGQIALIDGST-YE--IKTVLDT-GYAVHISRLS--------ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G  239 (567)
T ss_dssp             TTTTEEEEEETTT-CC--EEEEEEC-SSCEEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C
T ss_pred             CCCCeEEEEECCC-Ce--EEEEEeC-CCCccceEEC--------CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C
Confidence            4578999999998 63  3445543 3356789999        899999999999999999996  5555544433  3


Q ss_pred             cceeeeEee----ecCCeEEecCCc-eeEEEEE--------ecc--c--------ccc-ceEEEEecCCCCCCCCCcccC
Q 048511           81 KEVISLASY----IEGPVLVAGSSS-YQVSVES--------LLI--G--------HED-WVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus        81 ~~~~~~~~~----~~~~~l~~~~~~-~~~~~~~--------~~~--~--------h~~-~v~~l~~~p~~~~~~~~~~~~  136 (351)
                      .....++++    |+|++++++... ..+.++.        .+.  +        |.. .+..+..++     ....+  
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~-----~~~~~--  312 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-----YRPEF--  312 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-----SSSEE--
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC-----CCCEE--
Confidence            456789999    699988876533 3333322        111  0        112 466777773     22334  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccc
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~  215 (351)
                          ++....+|.|.++|....+...+..+.      .......+.|+|++++++++. .++.|.++|+.+++......+
T Consensus       313 ----vv~~~~~g~v~~vd~~~~~~~~v~~i~------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          313 ----IVNVKETGKILLVDYTDLNNLKTTEIS------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             ----EEEETTTTEEEEEETTCSSEEEEEEEE------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             ----EEEecCCCeEEEEecCCCccceeeeee------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence                666677899999998873222222221      223466889999999987766 579999999998742111111


Q ss_pred             cccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEE
Q 048511          216 KVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVS  293 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  293 (351)
                      --...|.+.-..+ ++|++. .+++.. .++.|.++|.......   ...|+.+..+...+..-..+..+|  ++.++.+
T Consensus       383 gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~p--~~~~l~v  456 (567)
T 1qks_A          383 GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTHP--NSQYLYV  456 (567)
T ss_dssp             SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCT--TCSEEEE
T ss_pred             cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeCC--CCCeEEE
Confidence            0012243322222 578744 445543 4689999998764311   123555555544433334577888  7877766


Q ss_pred             ecC-------CCeEEEEecC
Q 048511          294 GAD-------EKVARVFEAP  306 (351)
Q Consensus       294 ~~~-------dg~v~vw~~~  306 (351)
                      ...       ...|.|+|+.
T Consensus       457 ~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          457 DATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             ECTTCSSHHHHTCEEEEEGG
T ss_pred             ecCCCCCcccCceEEEEECC
Confidence            542       4599999976

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.45  E-value=7.2e-11  Score=100.56  Aligned_cols=215  Identities=6%  Similarity=-0.148  Sum_probs=139.0

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc---
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR---   80 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---   80 (351)
                      .++.|.+||..+ ++.  +.++. .......++++        +++.++++...++.|.+||..+.+....+.....   
T Consensus        62 ~~~~v~viD~~t-~~~--~~~i~-~~~~p~~i~~~--------~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           62 NSHVIFAIDINT-FKE--VGRIT-GFTSPRYIHFL--------SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             GGTEEEEEETTT-CCE--EEEEE-CCSSEEEEEEE--------ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             CCCEEEEEECcc-cEE--EEEcC-CCCCCcEEEEe--------CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence            468999999998 643  34443 34678899998        6775555555899999999998776544443220   


Q ss_pred             -cceeeeEeeecCCeEEecC-CceeEEEEEeccc-------cccceEEEEecCCCCCCCCCcccCCCceeEEeecC----
Q 048511           81 -KEVISLASYIEGPVLVAGS-SSYQVSVESLLIG-------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----  147 (351)
Q Consensus        81 -~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----  147 (351)
                       .....+++ .++.++++.. .+..+.++..-.+       -......+.++      +++++      ++++..+    
T Consensus       130 ~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~------~dG~l------~v~~~~~~~~~  196 (328)
T 3dsm_A          130 SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD------KYNKM------WTITDGGYEGS  196 (328)
T ss_dssp             TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEEC------TTSEE------EEEBCCBCTTC
T ss_pred             CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEc------CCCCE------EEEECCCccCC
Confidence             13445555 4444444432 2445544432111       01223566777      67777      7777655    


Q ss_pred             ------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc
Q 048511          148 ------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       148 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                            +.|.++|..+  ++....+.+.    .......++|+|+++.|+++..  .|.+||..+++..   ....+...
T Consensus       197 ~~~~~~~~v~~id~~t--~~v~~~~~~~----~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~---~~~~~~~~  265 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAET--FTVEKQFKFK----LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP---VRPFLEFR  265 (328)
T ss_dssp             SSCBCCCEEEEEETTT--TEEEEEEECC----TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC---SSCSBCCC
T ss_pred             ccccCCceEEEEECCC--CeEEEEEecC----CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee---eeeeecCC
Confidence                  7899999988  6665555421    1235789999999998888755  8999999876421   11112222


Q ss_pred             cccEEEEEeec-CCCEEEEE----eCCCcEEEEcCCCcc
Q 048511          222 FAAVMDISWSR-SSDYLLSV----SHDQTTRVFAPWKNV  255 (351)
Q Consensus       222 ~~~v~~v~~sp-~~~~l~s~----~~dg~i~vwd~~~~~  255 (351)
                      ......++++| ++.++++.    ..++.|.+||.. ++
T Consensus       266 ~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          266 DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            45688999999 55666665    568999999987 54

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=2.7e-10  Score=98.57  Aligned_cols=262  Identities=10%  Similarity=0.014  Sum_probs=162.3

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccceee
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +|.+||..+ ++  .+..+..-..+  .++++        +++++|+.+.          .++.|.+||..+.+....+.
T Consensus        48 ~v~v~D~~t-~~--~~~~i~~g~~p--~i~~s--------pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~  114 (373)
T 2mad_H           48 QQWVLDAGS-GS--ILGHVNGGFLP--NPVAA--------HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE  114 (373)
T ss_pred             EEEEEECCC-Ce--EEEEecCCCCC--CeEEC--------CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE
Confidence            889999988 64  44556543333  89999        8899998885          36789999998776655443


Q ss_pred             cc-c-----ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccc-cc-e---EEEEecCCCCCCCCCcccCCCceeEE
Q 048511           77 ST-Y-----RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHE-DW-V---YSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        77 ~~-~-----~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~-~~-v---~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      .. .     ......++++|+|+.++++..  ...+.++. -.+.. .. +   .++.+.|     .....      +++
T Consensus       115 ~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~-----~~~~~------~~~  182 (373)
T 2mad_H          115 LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHP-----GAPST------FYL  182 (373)
T ss_pred             CCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEe-----CCCce------EEE
Confidence            32 0     124558899999999998763  35566655 22210 00 0   1233332     12234      677


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc---
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS---  219 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~---  219 (351)
                      .+.||.+.++|. .  +................+ .....+.+++..++..+.++.+.+.|+......   .+..+.   
T Consensus       183 ~~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~---v~~~~~~~~  256 (373)
T 2mad_H          183 LCAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT---NKAPIDALS  256 (373)
T ss_pred             EcCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce---EeeeeeecC
Confidence            788999999999 6  544422211000011111 223456666665555557889999998754311   111111   


Q ss_pred             -------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511          220 -------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI  282 (351)
Q Consensus       220 -------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (351)
                             ........+.++|+++.++.+..          .+.|.++|..+.+          .+..+. .+.....++|
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----------vv~~i~-~g~~p~~i~~  325 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----------TSSQIS-LGHDVDAISV  325 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----------EEEEEE-CCCCcCeEEE
Confidence                   01223445788999888777543          3579999998876          333332 2235789999


Q ss_pred             eeeCCCc-EEEEec-CCCeEEEEecC-chhhhc
Q 048511          283 IQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       283 ~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~  312 (351)
                      ++  |++ +++++. .++.|.+||+. ++.+++
T Consensus       326 s~--Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          326 AQ--DGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CC--CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            99  888 677766 58999999987 565555

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=5.7e-10  Score=93.33  Aligned_cols=252  Identities=11%  Similarity=0.033  Sum_probs=161.2

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .++.|.+|+..  +++.. ..+..+...+.+|++.        +++.++++...++.|..||.. +.............+
T Consensus        39 ~~~~v~~~~~~--~~~~~-~~~~~~~~~~~~i~~~--------~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~  106 (300)
T 2qc5_A           39 KANKISSLDQS--GRIKE-FEVPTPDAKVMCLIVS--------SLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGP  106 (300)
T ss_dssp             TTTEEEEECTT--SCEEE-EECSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred             CCCeEEEECCC--CceEE-EECCCCCCcceeEEEC--------CCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCC
Confidence            35778888766  33332 2333444678999998        778877777667889999987 443211111123457


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEec
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQP  155 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  155 (351)
                      ..+++.++|.++++......+..+.        .+......+..+++.      +++++      +++...++.|..+|.
T Consensus       107 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d------~~g~l------~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          107 YGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLG------SDNAL------WFTENQNNSIGRITN  174 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC------TTSSE------EEEETTTTEEEEECT
T ss_pred             ccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEEC------CCCCE------EEEecCCCeEEEECC
Confidence            7888888888777654333332221        122234567888988      67777      777766888999998


Q ss_pred             cCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCC
Q 048511          156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSD  235 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  235 (351)
                       .  +.... +.   .......+..++++++++..++....+.|.+||. ++..    ....+..+...+.++++.++|+
T Consensus       175 -~--g~~~~-~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~----~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          175 -T--GKLEE-YP---LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI----SEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             -T--CCEEE-EE---CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCEEEEEECSTTC
T ss_pred             -C--CcEEE-ee---CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE----EEEECCCCCCCceEEEECCCCC
Confidence             4  44332 22   1123346889999999987776666788999998 3321    1112223445688999999998


Q ss_pred             EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          236 YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       236 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ++++...++.|..||.. +.        +.... .......+.++++.+  ++.++++.. . .|..++.
T Consensus       243 l~v~~~~~~~i~~~~~~-g~--------~~~~~-~~~~~~~~~~i~~~~--~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          243 IWFTEWGANQIGRITND-NT--------IQEYQ-LQTENAEPHGITFGK--DGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEEETTTTEEEEECTT-SC--------EEEEE-CCSTTCCCCCEEECT--TSCEEEECS-S-EEEEEEE
T ss_pred             EEEeccCCCeEEEECCC-Cc--------EEEEE-CCccCCccceeEeCC--CCCEEEEcc-C-ceEEeCC
Confidence            77776667899999983 33        11111 112334578899988  787777665 4 6666664

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=1.9e-10  Score=100.90  Aligned_cols=236  Identities=9%  Similarity=-0.045  Sum_probs=149.1

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce--eEEEE
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY--QVSVE  107 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~  107 (351)
                      .....|+|+        ++++++++...++.|++||..++........  ..... ++++++++.+++++...  .+..+
T Consensus       131 ~~P~~la~d--------~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          131 KYMWGIAAV--------GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCEEEEEEC--------STTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred             CCceEEEEe--------CCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence            357889999        7888888777789999999987654433222  22233 88999999887766543  33332


Q ss_pred             Ee--------c---cc-cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          108 SL--------L---IG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       108 ~~--------~---~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      ..        +   .. ....+.+++++|     .++.+      ++ +..++.|+.||...  +.. ..+.........
T Consensus       200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p-----~~g~l------yv-~d~~~~I~~~d~~~--~~~-~~~~~~~~~g~~  264 (409)
T 3hrp_A          200 MKASGWAPTRIGQLGSTFSGKIGAVALDE-----TEEWL------YF-VDSNKNFGRFNVKT--QEV-TLIKQLELSGSL  264 (409)
T ss_dssp             EGGGTTCEEEEEECCTTSCSCCCBCEECT-----TSSEE------EE-ECTTCEEEEEETTT--CCE-EEEEECCCCSCC
T ss_pred             EcCCCceeEEeeeccchhcCCcEEEEEeC-----CCCeE------EE-EECCCcEEEEECCC--CCE-EEEecccccCCC
Confidence            21        1   11 334567788883     25554      44 66788999999987  332 222100011111


Q ss_pred             cce-E-EEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccc---------------cccEEEEEeecCCCEE
Q 048511          176 LGF-Y-GGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH---------------FAAVMDISWSRSSDYL  237 (351)
Q Consensus       176 ~~i-~-~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~---------------~~~v~~v~~sp~~~~l  237 (351)
                      ..- . .++|+|+ +.++++-..++.|+.|+....       +..+.++               -.....++++|+|+++
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence            111 3 8999996 555555556789999987653       1111111               2347899999999988


Q ss_pred             EEEe-CCCcEEEEcCCCccccccCccceEEeccc---------cccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          238 LSVS-HDQTTRVFAPWKNVASLMGENSWHEVARP---------QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       238 ~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ++-+ .++.|+.|++.++...     .+.-....         ...-.....+++++  ++.++++-..+++|+.+++
T Consensus       338 vad~~~~~~I~~~~~~~G~v~-----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~--~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYVS-----TVAGQVDVASQIDGTPLEATFNYPYDICYDG--EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEEE-----EEEECTTCBSCCCBSTTTCCBSSEEEEEECS--SSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCEEEEEECCCCEEE-----EEeCCCCCCCcCCCChhceEeCCceEEEEcC--CCCEEEEECCCCeEEEEEe
Confidence            8877 8899999997666411     11100000         00123478999999  7889999999999998875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=3.4e-10  Score=94.70  Aligned_cols=239  Identities=8%  Similarity=-0.048  Sum_probs=157.4

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV  104 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  104 (351)
                      +......+.+|.+.        +++.++++...++.|.+||.. +.............+..+++.+++.++++......+
T Consensus        15 ~~~~~~~p~~i~~d--------~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v   85 (300)
T 2qc5_A           15 LSIPDSGPYGITSS--------EDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKI   85 (300)
T ss_dssp             CSSTTCCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             cCCCCCCcceeeEC--------CCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeE
Confidence            33445678899999        788888877778999999987 433221111122456788888888877765544433


Q ss_pred             EEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511          105 SVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL  176 (351)
Q Consensus       105 ~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      ..+.        .+......+.++++.      +++++      +++...++.|..+|...   ... .+.   ......
T Consensus        86 ~~~d~~g~~~~~~~~~~~~~~~~i~~~------~~g~l------~v~~~~~~~i~~~~~~g---~~~-~~~---~~~~~~  146 (300)
T 2qc5_A           86 GKLSKKGGFTEYPLPQPDSGPYGITEG------LNGDI------WFTQLNGDRIGKLTADG---TIY-EYD---LPNKGS  146 (300)
T ss_dssp             EEECTTSCEEEEECSSTTCCEEEEEEC------STTCE------EEEETTTTEEEEECTTS---CEE-EEE---CSSTTC
T ss_pred             EEECCCCCeEEecCCCCCCCCccceEC------CCCCE------EEEccCCCeEEEECCCC---CEE-Ecc---CCCCCC
Confidence            3221        112223568889988      67777      77776688899998762   222 222   112345


Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                      .+..++++++++..++...++.|..||. +++.   . ......+...+..+++.+++.++++....+.|.+||. ++. 
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-  219 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL---E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-  219 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcE---E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-
Confidence            6889999999996666656789999998 4321   1 1122233456889999999987777666778999998 333 


Q ss_pred             cccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCch
Q 048511          257 SLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~  308 (351)
                             +.... ...+...+.++++.+  ++.++++...++.|..|+..+.
T Consensus       220 -------~~~~~-~~~~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~g~  261 (300)
T 2qc5_A          220 -------ISEYD-IPTPNARPHAITAGK--NSEIWFTEWGANQIGRITNDNT  261 (300)
T ss_dssp             -------EEEEE-CSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTTSC
T ss_pred             -------EEEEE-CCCCCCCceEEEECC--CCCEEEeccCCCeEEEECCCCc
Confidence                   11111 112345578999998  7888887777899999998653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.42  E-value=3.2e-11  Score=99.59  Aligned_cols=200  Identities=8%  Similarity=-0.031  Sum_probs=134.1

Q ss_pred             ceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           31 WIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      ...++++.        +++++++ +.+.++.|.+|+..+..... .                                  
T Consensus        25 ~p~~i~~~--------~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~----------------------------------   61 (270)
T 1rwi_B           25 SPSGVAVD--------SAGNVYVTSEGMYGRVVKLATGSTGTTV-L----------------------------------   61 (270)
T ss_dssp             CEEEEEEC--------TTCCEEEEECSSSCEEEEECC-----EE-C----------------------------------
T ss_pred             CccceEEC--------CCCCEEEEccCCCCcEEEecCCCcccce-E----------------------------------
Confidence            67889999        7788777 54778899999865432110 0                                  


Q ss_pred             ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      ...+...+.++++.      +++++      +++.. ++.|.+||...  ... ..+.    ......+..++++++++.
T Consensus        62 ~~~~~~~p~~i~~~------~~g~l------~v~~~-~~~i~~~d~~~--~~~-~~~~----~~~~~~p~~i~~~~~g~l  121 (270)
T 1rwi_B           62 PFNGLYQPQGLAVD------GAGTV------YVTDF-NNRVVTLAAGS--NNQ-TVLP----FDGLNYPEGLAVDTQGAV  121 (270)
T ss_dssp             CCCSCCSCCCEEEC------TTCCE------EEEET-TTEEEEECTTC--SCC-EECC----CCSCSSEEEEEECTTCCE
T ss_pred             eeCCcCCcceeEEC------CCCCE------EEEcC-CCEEEEEeCCC--ceE-eeee----cCCcCCCcceEECCCCCE
Confidence            01122456788998      67776      66665 88999999875  322 1121    122246789999999997


Q ss_pred             EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc
Q 048511          190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      +++...++.|.+|+..+..     ...........+.+++++++++++++...++.|.+||.....          ....
T Consensus       122 ~v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~----------~~~~  186 (270)
T 1rwi_B          122 YVADRGNNRVVKLAAGSKT-----QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN----------QVVL  186 (270)
T ss_dssp             EEEEGGGTEEEEECTTCCS-----CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC----------EEEC
T ss_pred             EEEECCCCEEEEEECCCce-----eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc----------eEee
Confidence            7777778999999765432     111112223457889999999977777778899999987654          1111


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhh
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFL  310 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  310 (351)
                      ...+...+..+++++  ++.++++...++.|.+|+..+...
T Consensus       187 ~~~~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          187 PFTDITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSSCCSEEEEEECT--TCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCCceEEEECC--CCCEEEEECCCCcEEEEcCCCCcc
Confidence            112224578999998  788888888899999999876543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=2.2e-10  Score=96.14  Aligned_cols=215  Identities=6%  Similarity=-0.035  Sum_probs=131.1

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .++.|+.||..+ ++..   .+ .+...+.+++++        ++++++++ . ++.|.+||..++.......       
T Consensus        33 ~~~~i~~~d~~~-~~~~---~~-~~~~~~~~i~~~--------~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~-------   90 (297)
T 3g4e_A           33 PAKKVCRWDSFT-KQVQ---RV-TMDAPVSSVALR--------QSGGYVAT-I-GTKFCALNWKEQSAVVLAT-------   90 (297)
T ss_dssp             TTTEEEEEETTT-CCEE---EE-ECSSCEEEEEEB--------TTSSEEEE-E-TTEEEEEETTTTEEEEEEE-------
T ss_pred             CCCEEEEEECCC-CcEE---EE-eCCCceEEEEEC--------CCCCEEEE-E-CCeEEEEECCCCcEEEEEe-------
Confidence            467788888877 5432   22 235678999999        77885554 3 5678899987654221110       


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC---------CeEEEE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD---------KTMMIW  153 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d---------~~i~iw  153 (351)
                                               ... .....++.+++.      +++++      +++....         ..-.||
T Consensus        91 -------------------------~~~~~~~~~~~di~~d------~dG~l------~~~~~~~~~~~~~~~~~~~~l~  133 (297)
T 3g4e_A           91 -------------------------VDNDKKNNRFNDGKVD------PAGRY------FAGTMAEETAPAVLERHQGALY  133 (297)
T ss_dssp             -------------------------CCTTCSSEEEEEEEEC------TTSCE------EEEEEECCSBTTBCCTTCEEEE
T ss_pred             -------------------------cCCCCCCCCCCCEEEC------CCCCE------EEecCCcccccccccCCCcEEE
Confidence                                     000 112347788888      67776      6654322         234556


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcc--cCcccCcccccccccccccEEEEEe
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNV--GVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~--~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      .+... +.... +.     ........++|+|+++.|+.+ +.++.|.+|++.  ++..........+..+...+..+++
T Consensus       134 ~~d~~-g~~~~-~~-----~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          134 SLFPD-HHVKK-YF-----DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             EECTT-SCEEE-EE-----EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             EEECC-CCEEE-Ee-----eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            55431 22222 11     122345789999999877555 457899999974  3321111122333334457889999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcE-EEEecC
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHR-FVSGAD  296 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-l~s~~~  296 (351)
                      .++|++.++...++.|.+||..+++          .+..+..+...+++++|. |  +++. +++...
T Consensus       207 d~~G~lwva~~~~~~v~~~d~~tG~----------~~~~i~~p~~~~t~~~f~g~--d~~~L~vt~~~  262 (297)
T 3g4e_A          207 DAEGKLWVACYNGGRVIRLDPVTGK----------RLQTVKLPVDKTTSCCFGGK--NYSEMYVTCAR  262 (297)
T ss_dssp             BTTSCEEEEEETTTEEEEECTTTCC----------EEEEEECSSSBEEEEEEESG--GGCEEEEEEBC
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCce----------EEEEEECCCCCceEEEEeCC--CCCEEEEEcCC
Confidence            9999888877778889999998776          333333444568999998 6  5544 444443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.41  E-value=8.8e-12  Score=107.21  Aligned_cols=186  Identities=16%  Similarity=0.099  Sum_probs=124.9

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL  110 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  110 (351)
                      .++.++++        +...++++|+.++ +++|++............   .                     .... ..
T Consensus        39 ~~nlLais--------~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~---~---------------------~~~~-~~   84 (388)
T 1xip_A           39 SLQNLDIS--------NSKSLFVAASGSK-AVVGELQLLRDHITSDST---P---------------------LTFK-WE   84 (388)
T ss_dssp             CCBCEEEE--------TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC---C---------------------CCCS-EE
T ss_pred             cccEEEEc--------CCCCEEEEeCCCE-EEEEEhhHhhhhhccccc---c---------------------ccce-EE
Confidence            68999999        7888999999885 666998654311100000   0                     0000 01


Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  190 (351)
                      ..+.. |+.++|.        ++.      |+++ .++.|++||++..  .......     .+...+.++.+.+.  .+
T Consensus        85 ~~lp~-V~~l~fd--------~~~------L~v~-~~~~l~v~dv~sl--~~~~~~~-----~~~~~v~~i~~~~p--~~  139 (388)
T 1xip_A           85 KEIPD-VIFVCFH--------GDQ------VLVS-TRNALYSLDLEEL--SEFRTVT-----SFEKPVFQLKNVNN--TL  139 (388)
T ss_dssp             EECTT-EEEEEEE--------TTE------EEEE-ESSEEEEEESSST--TCEEEEE-----ECSSCEEEEEECSS--EE
T ss_pred             eeCCC-eeEEEEC--------CCE------EEEE-cCCcEEEEEchhh--hccCccc-----eeecceeeEEecCC--CE
Confidence            12455 9999983        345      7777 8899999999873  3333333     34456777776654  38


Q ss_pred             EEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc-
Q 048511          191 LAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR-  269 (351)
Q Consensus       191 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-  269 (351)
                      +++..||.|.+||+.++..     .    .+...|++++|+|+|  ++.|..||.+++|+.......     .-..+.. 
T Consensus       140 av~~~dG~L~v~dl~~~~~-----~----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~-----~k~~I~~P  203 (388)
T 1xip_A          140 VILNSVNDLSALDLRTKST-----K----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME-----KQFEFSLP  203 (388)
T ss_dssp             EEEETTSEEEEEETTTCCE-----E----EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE-----EEEEECCC
T ss_pred             EEEECCCCEEEEEccCCcc-----c----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc-----ccceecCC
Confidence            8899999999999987631     2    145689999999999  677889999999988665410     0112211 


Q ss_pred             --cc---ccccceeEEEEeeeCCCcEEEE
Q 048511          270 --PQ---VHGHDINCVTIIQGKGNHRFVS  293 (351)
Q Consensus       270 --~~---~~~~~i~~~~~~~~~~~~~l~s  293 (351)
                        +.   +|...|.++.|.+  ++.++++
T Consensus       204 p~~~~~~~~~~~V~sI~wl~--~~~flv~  230 (388)
T 1xip_A          204 SELEELPVEEYSPLSVTILS--PQDFLAV  230 (388)
T ss_dssp             HHHHTSCTTTSEEEEEEESS--SSEEEEE
T ss_pred             cccccccCCCeeEEEEEEec--CCeEEEE
Confidence              11   3677899999998  7888775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.39  E-value=4.8e-11  Score=102.33  Aligned_cols=194  Identities=10%  Similarity=0.136  Sum_probs=125.0

Q ss_pred             CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc-----eeEEEEE-------eccccccceEEEEecCC
Q 048511           58 DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS-----YQVSVES-------LLIGHEDWVYSVQWEPP  125 (351)
Q Consensus        58 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~-------~~~~h~~~v~~l~~~p~  125 (351)
                      ++.|.+||+.+++....      .....+.|+|+|+.|+.....     ..+.++.       .+..+.. +..+.|+  
T Consensus        42 ~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ws--  112 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWN--  112 (347)
T ss_dssp             EEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEEC--
T ss_pred             cceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeEC--
Confidence            56799999987654222      356788999999988875432     2232222       1222233 8899999  


Q ss_pred             CCCCCCCcccCCCceeEEeecC---------------------------CeEEEEeccCCCcceEEEEEeccccccccce
Q 048511          126 STAPSDGVSCQQPSSILSASMD---------------------------KTMMIWQPEKTTGIWMNVVTVGELSHSALGF  178 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  178 (351)
                          |+++.      |+.++.+                           ..|.+||+..  +..+..+.     . . .+
T Consensus       113 ----pdg~~------l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~-----~-~-~~  173 (347)
T 2gop_A          113 ----EDSRK------LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFE-----K-P-RF  173 (347)
T ss_dssp             ----TTSSE------EEEEEECCCC---------CCCC---------CEEEEEEEETTT--TEEEEEEE-----E-E-TT
T ss_pred             ----CCCCE------EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeec-----C-C-Cc
Confidence                78887      8777642                           5789999987  55434443     1 2 57


Q ss_pred             EEEEEcCCCCEEEEEeeCC-------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC--------
Q 048511          179 YGGHWSPDGRSILAHGYGG-------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------  243 (351)
Q Consensus       179 ~~i~~~~~~~~l~~~~~dg-------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------  243 (351)
                      ..++|+|++ +++++..++       ...||.+.+++      ...+..+ ..+..+  +|+|++|+.++.+        
T Consensus       174 ~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~  243 (347)
T 2gop_A          174 SSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEH  243 (347)
T ss_dssp             CEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSS
T ss_pred             ccccCCCCe-EEEEEecccccccccccccEEEeCCCc------eEEeccC-cceeeE--CCCCCEEEEEEccccCCcccc
Confidence            789999999 777776542       34555544332      2233333 445444  9999998877644        


Q ss_pred             CcEEEEcCCCccccccCccceEEeccccccccceeE-EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC-VTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..|.+||  +++          .......+...+.. +.|+   ++ ++++++.++.++|| +.
T Consensus       244 ~~l~~~d--~~~----------~~~l~~~~~~~~~~~~~~s---dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          244 NKLYIYD--GKE----------VMGILDEVDRGVGQAKIKD---GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             CEEEEEC--SSC----------EEESSTTCCSEEEEEEEET---TE-EEEEEEETTEEEEE-EE
T ss_pred             ceEEEEC--CCc----------eEeccccCCcccCCccEEc---Cc-EEEEEecCCcEEEE-Ec
Confidence            3688888  333          12222344556775 7775   46 88999999999999 86

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.39  E-value=1.2e-10  Score=99.84  Aligned_cols=269  Identities=12%  Similarity=0.072  Sum_probs=166.5

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~   74 (351)
                      ++.|.+.|..+ +  +.+.++..-..+  .+.++        +++++|+.+.          .++.|.+||..+.+....
T Consensus        58 ~~~V~ViD~~t-~--~v~~~I~vG~~P--~va~s--------pDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~  124 (386)
T 3sjl_D           58 VTQQFVIDGEA-G--RVIGMIDGGFLP--NPVVA--------DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD  124 (386)
T ss_dssp             SEEEEEEETTT-T--EEEEEEEECSSC--EEEEC--------TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEECCC-C--eEEEEEECCCCC--cEEEC--------CCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEE
Confidence            67999999988 6  445666644444  49999        8899887765          367899999999887766


Q ss_pred             eeccc------ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEE------EecCCCCCCCCCcccCCCce
Q 048511           75 TQSTY------RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSV------QWEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        75 ~~~~~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l------~~~p~~~~~~~~~~~~~~~~  140 (351)
                      +..+.      ......++++++|+.++++..  ...+.++..-...  .+..+      .+.|     ...+.      
T Consensus       125 I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~--vv~tI~v~g~~~~~P-----~g~~~------  191 (386)
T 3sjl_D          125 IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVPDCYHIFP-----TAPDT------  191 (386)
T ss_dssp             EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEE-----EETTE------
T ss_pred             EECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc--EEEEEECCCcceeec-----CCCce------
Confidence            64432      235678999999999888753  4566555432211  11111      2232     23344      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEc-CCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      +++.+.||.+.+.++... +....... .........+. ...|. ++|++++ .+.+|.|++.|+.+...........+
T Consensus       192 ~~~~~~DG~~~~v~~~~~-g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~  268 (386)
T 3sjl_D          192 FFMHCRDGSLAKVAFGTE-GTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEAL  268 (386)
T ss_dssp             EEEEETTSCEEEEECCSS-SCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             eEEECCCCCEEEEECCCC-CeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecc
Confidence            778888999999998752 22221111 11111112222 24554 6776555 55589999999976532111111100


Q ss_pred             c-------cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511          219 S-------GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       219 ~-------~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                      .       ........++++|+++.++....          ...|.++|+.+.+          .+.++. -+..++.++
T Consensus       269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----------v~~~i~-vg~~~~~la  337 (386)
T 3sjl_D          269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----------RLAKFE-MGHEIDSIN  337 (386)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----------EEEEEE-EEEEECEEE
T ss_pred             ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----------EEEEEE-CCCCcceEE
Confidence            0       01223445778999888877542          2579999998887          333322 123688999


Q ss_pred             EeeeCCCc-EE-EEecCCCeEEEEecC-chhhhceee
Q 048511          282 IIQGKGNH-RF-VSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       282 ~~~~~~~~-~l-~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      +++  |++ +| ++...++.|.++|.. ++.++++..
T Consensus       338 vs~--D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          338 VSQ--DEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             ECS--SSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             ECC--CCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            999  765 54 445679999999986 776666644

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.38  E-value=9.3e-10  Score=100.11  Aligned_cols=282  Identities=10%  Similarity=0.042  Sum_probs=172.4

Q ss_pred             CCCCceEEEEEcc--CCCceEEEEeeeecCCceeEEEeeCCcccCCCC----CccEEEEee-CCCcEEEEecCCCcccce
Q 048511            2 GGLDNKIHLYRGQ--RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEA----ISILLVSSS-QDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         2 g~~dg~i~vw~~~--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~----~~~~l~t~~-~dg~i~iwd~~~~~~~~~   74 (351)
                      ++.|+.|.+||+.  + .  ..+..+.... ....++|+        +    +|++++++. .+++|.++|..+.+.+..
T Consensus       214 ~~~dg~V~viD~~~~t-~--~~v~~i~~G~-~P~~ia~s--------~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          214 IGRDGKVNMIDLWMKE-P--TTVAEIKIGS-EARSIETS--------KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             EETTSEEEEEETTSSS-C--CEEEEEECCS-EEEEEEEC--------CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EcCCCeEEEEECCCCC-C--cEeEEEecCC-CCceeEEc--------cccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            4568899999995  4 4  3445565433 45789998        4    788877765 459999999988777655


Q ss_pred             eeccc----------ccceeeeEeeecCCeEEec-CCceeEEEEEecc---------ccccceEEEEecCCCCCCCCCcc
Q 048511           75 TQSTY----------RKEVISLASYIEGPVLVAG-SSSYQVSVESLLI---------GHEDWVYSVQWEPPSTAPSDGVS  134 (351)
Q Consensus        75 ~~~~~----------~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~---------~h~~~v~~l~~~p~~~~~~~~~~  134 (351)
                      +....          ...+..+..++++..+++. ...+.+.++....         .......++.|+      +++++
T Consensus       282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~------pdgr~  355 (567)
T 1qks_A          282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD------GSHRY  355 (567)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC------TTSCE
T ss_pred             EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC------CCCCE
Confidence            43221          1134566666665544432 3334443332111         122346678899      78887


Q ss_pred             cCCCceeEEee-cCCeEEEEeccCCCcceEEEEEe-ccccccc-cceEEEEEcCCCCEEE-EEe-eCCeEEEEEcccCcc
Q 048511          135 CQQPSSILSAS-MDKTMMIWQPEKTTGIWMNVVTV-GELSHSA-LGFYGGHWSPDGRSIL-AHG-YGGAFHLWRNVGVDI  209 (351)
Q Consensus       135 ~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~-~~i~~i~~~~~~~~l~-~~~-~dg~i~~~d~~~~~~  209 (351)
                            |+++. .++.|.++|+.+  ++.+..+.+ ... .|. ..+. + ++|++..++ ++. .++.|.++|......
T Consensus       356 ------~~va~~~sn~V~ViD~~t--~kl~~~i~vgg~~-Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~  424 (567)
T 1qks_A          356 ------FITAANARNKLVVIDTKE--GKLVAIEDTGGQT-PHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGH  424 (567)
T ss_dssp             ------EEEEEGGGTEEEEEETTT--TEEEEEEECSSSS-BCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ------EEEEeCCCCeEEEEECCC--CcEEEEEeccCcC-CCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence                  65554 688999999998  777776665 332 232 2222 2 588755444 443 468999999876332


Q ss_pred             c--CcccccccccccccEEEEEeecCCCEEEEEeC-------CCcEEEEcCCCccccccCccceEEec-----ccccccc
Q 048511          210 D--NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-------DQTTRVFAPWKNVASLMGENSWHEVA-----RPQVHGH  275 (351)
Q Consensus       210 ~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~  275 (351)
                      .  .++.++++......-..+..+|++++|.+...       ..+|.|+|+.+.+.... ...++.+.     .+...+.
T Consensus       425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~  503 (567)
T 1qks_A          425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS-DPEFKTLPIAEWAGITEGQP  503 (567)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS-CCCEEEECHHHHHTCCSSCC
T ss_pred             ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc-CCCcEEeccccccccCCCCc
Confidence            1  23455666544333345788999999887653       35999999987610000 01112221     1111245


Q ss_pred             ceeEEEEeeeCCCcEEEEe--c---CCCeEEEEecC-chhhhceee
Q 048511          276 DINCVTIIQGKGNHRFVSG--A---DEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~--~---~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .+..+.|++  +|..+..+  +   .++.|.|+|.. .+.+.+++.
T Consensus       504 ~~~~~~~~~--~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          504 RVVQGEFNK--DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEEEEECT--TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             ceEeeeECC--CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            688999999  77666544  2   47899999976 555555543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=4.7e-10  Score=94.63  Aligned_cols=224  Identities=10%  Similarity=0.064  Sum_probs=138.6

Q ss_pred             CCCceEEEEEccCCCceEEEEe--eeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccce-eec-
Q 048511            3 GLDNKIHLYRGQRTGKFVRACE--LKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSAN-TQS-   77 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~-   77 (351)
                      ..++.|.+||..+ +++..+..  ..++...+.++++.        ++ ++++++.. .+.|.+||.. ++.... ... 
T Consensus        43 ~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~--------~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~  111 (314)
T 1pjx_A           43 KPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCD--------RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDS  111 (314)
T ss_dssp             EECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEEC--------SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCT
T ss_pred             CCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEe--------cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccC
Confidence            4578899999877 65433221  01255678999999        77 66555444 4478899987 543221 111 


Q ss_pred             --ccccceeeeEeeecCCeEEecCCc---------------eeEEEEEe------ccccccceEEEEec----CCCCCCC
Q 048511           78 --TYRKEVISLASYIEGPVLVAGSSS---------------YQVSVESL------LIGHEDWVYSVQWE----PPSTAPS  130 (351)
Q Consensus        78 --~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~------~~~h~~~v~~l~~~----p~~~~~~  130 (351)
                        .....+..+++.++|.++++....               ..+..+..      +..+......++++    |      
T Consensus       112 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~------  185 (314)
T 1pjx_A          112 EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDG------  185 (314)
T ss_dssp             TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTS------
T ss_pred             CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCC------
Confidence              112346788899999887775443               23322221      11122335667777    5      


Q ss_pred             CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc-cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc
Q 048511          131 DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA-LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       131 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~  209 (351)
                      +++.     ++++...++.|.+||+... +.............+. ..+..++++++|+++++...++.|.+||..+++ 
T Consensus       186 dg~~-----l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~-  258 (314)
T 1pjx_A          186 RPYQ-----LIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-  258 (314)
T ss_dssp             CEEE-----EEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-
T ss_pred             CCCE-----EEEEECCCCeEEEEECCCC-CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-
Confidence            4433     0455556889999998721 3322111111122232 457889999999888877788999999988542 


Q ss_pred             cCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~  254 (351)
                          .+..+..+...+.+++|+|+++.| ++...++.|..|++...
T Consensus       259 ----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          259 ----PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ----CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ----EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence                334444455778999999999955 45556789999998654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.7e-10  Score=109.32  Aligned_cols=241  Identities=12%  Similarity=-0.013  Sum_probs=147.4

Q ss_pred             cCCceeEEEeeCCcccCCCCCccEEEEeeCC-----CcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           28 HTDWIRSLDFSLPVCTSGEAISILLVSSSQD-----KVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      |...+..++|+        |+|++||.++.+     ..|++||+.+++.......  ......++|+|+ +.|+.+..+.
T Consensus       161 ~~~~~~~~~~S--------PDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          161 GATALDAWAAS--------DDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--WVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             --EEEEEEEEC--------TTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--EEESCCCEESTT-SEEEEEECCC
T ss_pred             CCEEEEeEEEC--------CCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--CceeccEEEECC-CEEEEEEecC
Confidence            44468899999        889999877654     4699999998876543211  112257889999 8777654322


Q ss_pred             --------------eEEEEEe----------c--cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC-----eEE
Q 048511          103 --------------QVSVESL----------L--IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK-----TMM  151 (351)
Q Consensus       103 --------------~~~~~~~----------~--~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~-----~i~  151 (351)
                                    .+..+..          +  ..+...+..+.|+      +||++      |+..+.++     .|.
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~S------pDG~~------l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVS------SDGRW------VVITSSEGTDPVNTVH  297 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC------TTSCE------EEEEEECTTCSCCEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEEC------CCCCE------EEEEEEccCCCcceEE
Confidence                          2333221          1  1122357889999      79988      88777554     899


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC----CeEEEEEcccCcccCcccccccccccccEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      +||+..........+.     .+...+.... +|+++.|+..+.+    +.|.+||+.+.. .  .....+..+...+..
T Consensus       298 ~~d~~~~~~~~~~~l~-----~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~--~~~~l~~~~~~~l~~  368 (741)
T 1yr2_A          298 VARVTNGKIGPVTALI-----PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-P--RFDTVVPESKDNLES  368 (741)
T ss_dssp             EEEEETTEECCCEEEE-----CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-C--EEEEEECCCSSEEEE
T ss_pred             EEECCCCCCcccEEec-----CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-c--ccEEEecCCCCeEEE
Confidence            9999872113122332     2222334443 4888888877753    569999987641 0  112223344455777


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCC-CccccccCccceEEeccccc-cccceeEEEEeeeCCCcEEE----EecCCCeEE
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPW-KNVASLMGENSWHEVARPQV-HGHDINCVTIIQGKGNHRFV----SGADEKVAR  301 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~----s~~~dg~v~  301 (351)
                      ++++ ++.++++...|+..+||.+. .+.          ....+.. ....+..+++++  ++..|+    +....+.|+
T Consensus       369 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g~----------~~~~l~~~~~~~v~~~~~s~--d~~~l~~~~ss~~~P~~i~  435 (741)
T 1yr2_A          369 VGIA-GNRLFASYIHDAKSQVLAFDLDGK----------PAGAVSLPGIGSASGLSGRP--GDRHAYLSFSSFTQPATVL  435 (741)
T ss_dssp             EEEE-BTEEEEEEEETTEEEEEEEETTSC----------EEEECBCSSSCEEEEEECCB--TCSCEEEEEEETTEEEEEE
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCCC----------ceeeccCCCCeEEEEeecCC--CCCEEEEEEcCCCCCCEEE
Confidence            8887 56678888889988777654 222          1222222 245588889988  666555    334568999


Q ss_pred             EEecCchhhhce
Q 048511          302 VFEAPLSFLKTL  313 (351)
Q Consensus       302 vw~~~~~~~~~~  313 (351)
                      +||+.......+
T Consensus       436 ~~d~~tg~~~~l  447 (741)
T 1yr2_A          436 ALDPATAKTTPW  447 (741)
T ss_dssp             EEETTTTEEEEC
T ss_pred             EEECCCCcEEEE
Confidence            999874334434

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.33  E-value=4.5e-10  Score=105.91  Aligned_cols=217  Identities=9%  Similarity=-0.079  Sum_probs=137.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCc----------------EEEEecCC
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKV----------------IRIWKLAL   68 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~----------------i~iwd~~~   68 (351)
                      ..+|++||+.+ ++.... .+..  ..+..++|+        ++++.|+.++.++.                |.+|++.+
T Consensus       150 ~~~i~v~d~~t-g~~~~~-~~~~--~~~~~~~ws--------pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t  217 (710)
T 2xdw_A          150 WVTIKFMKVDG-AKELPD-VLER--VKFSCMAWT--------HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT  217 (710)
T ss_dssp             CEEEEEEETTT-TEEEEE-EEEE--ECSCCEEEC--------TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS
T ss_pred             eEEEEEEECCC-CCCCcc-cccC--cccceEEEE--------eCCCEEEEEEECCccccccccccccCCCCEEEEEECCC
Confidence            34899999998 754332 2322  236789999        88999999888776                99999987


Q ss_pred             Cccccee-ecc--cccceeeeEeeecCCeEEecCC-----ceeEEEEEe---------------ccccccceEEEEecCC
Q 048511           69 RGSSANT-QST--YRKEVISLASYIEGPVLVAGSS-----SYQVSVESL---------------LIGHEDWVYSVQWEPP  125 (351)
Q Consensus        69 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~---------------~~~h~~~v~~l~~~p~  125 (351)
                      +...... ...  .......+.++++|+.|+....     ...+.++..               +..+...+.. .|+  
T Consensus       218 ~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s--  294 (710)
T 2xdw_A          218 DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVT--  294 (710)
T ss_dssp             CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEE--
T ss_pred             CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEe--
Confidence            6532111 111  1233568899999998887542     334444332               1223333333 366  


Q ss_pred             CCCCCCCcccCCCceeEEeecC----CeEEEEeccCCCcceEEEEEeccccccc-cceEEEEEcCCCCEEEEEeeCCe--
Q 048511          126 STAPSDGVSCQQPSSILSASMD----KTMMIWQPEKTTGIWMNVVTVGELSHSA-LGFYGGHWSPDGRSILAHGYGGA--  198 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~--  198 (351)
                          +++..      |+..+..    ..|.+||+...+......+.    .... ..+..++|++++.++++...++.  
T Consensus       295 ----~dg~~------l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          295 ----NEGTV------FTFKTNRHSPNYRLINIDFTDPEESKWKVLV----PEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             ----EETTE------EEEEECTTCTTCEEEEEETTSCCGGGCEEEE----CCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             ----ccCCE------EEEEECCCCCCCEEEEEeCCCCCcccceecc----CCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence                56665      5555442    36999998873211122222    1222 35778999888888888888885  


Q ss_pred             EEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-e---CCCcEEEEcCCCcc
Q 048511          199 FHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-S---HDQTTRVFAPWKNV  255 (351)
Q Consensus       199 i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~---~dg~i~vwd~~~~~  255 (351)
                      |.+|++.++     ..+..+..+.+.+..+.++|++..++.. +   ..++|++||+.+++
T Consensus       361 l~~~~~~~g-----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATG-----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTC-----CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCC-----CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            555566454     2345555667788999999998766533 2   35789999997765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=2.9e-10  Score=99.14  Aligned_cols=266  Identities=11%  Similarity=0.027  Sum_probs=166.5

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANT   75 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~   75 (351)
                      +.|.++|..+ .  +.+.++..-..+  .+.++        +++++|+.+.          .++.|.++|..+.+....+
T Consensus        99 ~~VsVID~~t-~--~vv~~I~vG~~P--gia~S--------pDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I  165 (426)
T 3c75_H           99 TQQFVIDGST-G--RILGMTDGGFLP--HPVAA--------EDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADI  165 (426)
T ss_dssp             EEEEEEETTT-T--EEEEEEEECSSC--EEEEC--------TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEECCC-C--EEEEEEECCCCC--ceEEC--------CCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEE
Confidence            7999999998 6  445566543445  89999        8898888775          4678999999998877665


Q ss_pred             ecc------cccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEE------EecCCCCCCCCCcccCCCcee
Q 048511           76 QST------YRKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSV------QWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        76 ~~~------~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l------~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      ...      .......+.++++|+.++++..  ...+.++..-...  .+..+      ...|     .....      +
T Consensus       166 ~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k--vv~~I~v~g~~~~~p-----~g~~~------~  232 (426)
T 3c75_H          166 ELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT--FDRMLDVPDCYHIFP-----ASPTV------F  232 (426)
T ss_dssp             EETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEE-----EETTE------E
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe--EEEEEEcCCceeecc-----CCCcE------E
Confidence            432      1234568899999999998753  4555555432211  11122      2221     11233      6


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccccccccc-eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV---  217 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---  217 (351)
                      ++.+.||.+.+.+...  +....... ........+ ...+.+.+++..++.....+.+.+.|+.............   
T Consensus       233 v~~~~dG~~~~V~~~~--~~v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~  309 (426)
T 3c75_H          233 YMNCRDGSLARVDFAD--GETKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE  309 (426)
T ss_dssp             EEEETTSSEEEEECCT--TCCEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred             EEEcCCCCEEEEECCC--CcEEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence            7777899988888854  33332111 001111111 1235678998888777888999999986543210000000   


Q ss_pred             --cc--cccccEEEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511          218 --PS--GHFAAVMDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII  283 (351)
Q Consensus       218 --~~--~~~~~v~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (351)
                        ..  ........++++|+++.+++...          ++.|.++|..+.+          .+.++.. +.....++|+
T Consensus       310 ~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k----------vv~~I~v-g~~P~gia~s  378 (426)
T 3c75_H          310 AERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE----------RINKIEL-GHEIDSINVS  378 (426)
T ss_dssp             TTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----------EEEEEEE-EEEECEEEEC
T ss_pred             cccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe----------EEEEEEC-CCCcCeEEEc
Confidence              00  01112233789999887766542          3579999998887          3333322 2247899999


Q ss_pred             eeCCCc-EEEEec-CCCeEEEEecC-chhhhce
Q 048511          284 QGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       284 ~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~  313 (351)
                      +  |++ ++++.. .++.|.|+|+. .+.++++
T Consensus       379 p--Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          379 Q--DAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             C--SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             c--CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9  887 676666 69999999987 6666665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.33  E-value=3.4e-10  Score=106.43  Aligned_cols=235  Identities=12%  Similarity=0.060  Sum_probs=144.9

Q ss_pred             CCccEEEEeeCCC---cEEEEecC--CCcccceeecc------cccceeeeEeeecCCeEE-----ecCCceeEEEEEec
Q 048511           47 AISILLVSSSQDK---VIRIWKLA--LRGSSANTQST------YRKEVISLASYIEGPVLV-----AGSSSYQVSVESLL  110 (351)
Q Consensus        47 ~~~~~l~t~~~dg---~i~iwd~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~  110 (351)
                      ++|++++....++   .-.+|...  .+.. ..+...      +...+..+.|+|+|+.|+     .|+....+.++..-
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            5677777665544   34555543  3322 112111      122467889999999998     35555667666542


Q ss_pred             cc------cccce--EEEEecCCCCCCCCCcccCCCceeEEeecCCe-------------EEEEeccCCCcceEEEEEec
Q 048511          111 IG------HEDWV--YSVQWEPPSTAPSDGVSCQQPSSILSASMDKT-------------MMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       111 ~~------h~~~v--~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~-------------i~iwd~~~~~~~~~~~~~~~  169 (351)
                      .+      +...+  ..++|+      +|++.      |+.++.|..             |++|++.+........+.  
T Consensus       156 tg~~~~~~~~~~~~~~~~~ws------pDg~~------l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--  221 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWT------PDSKG------FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--  221 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEEC------TTSSE------EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--
T ss_pred             CCCCcCCcccCcccccceEEe------cCCCE------EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--
Confidence            21      22223  678999      78888      999888776             999999873222111111  


Q ss_pred             cccccccceEEEEEcCCCCEEEEEeeCC----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe---C
Q 048511          170 ELSHSALGFYGGHWSPDGRSILAHGYGG----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS---H  242 (351)
Q Consensus       170 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---~  242 (351)
                       ...+...+..+.|+|+|++|+.++.++    .|++++..++.      ...+..+...+....+ +++.+++...   .
T Consensus       222 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~  293 (695)
T 2bkl_A          222 -RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAP  293 (695)
T ss_dssp             -CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred             -cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence             223445788999999999998887766    66666554432      3344445555566666 5666444443   2


Q ss_pred             CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC--chhhhce
Q 048511          243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP--LSFLKTL  313 (351)
Q Consensus       243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~--~~~~~~~  313 (351)
                      ++.|.+||+.++.     ...|..+... .....+..++|+   ++.++++...|+..+||.++  ++.++.+
T Consensus       294 ~~~l~~~d~~~~~-----~~~~~~l~~~-~~~~~l~~~~~~---~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          294 RQRVFEVDPAKPA-----RASWKEIVPE-DSSASLLSVSIV---GGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             TCEEEEEBTTBCS-----GGGCEEEECC-CSSCEEEEEEEE---TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             CCEEEEEeCCCCC-----ccCCeEEecC-CCCCeEEEEEEE---CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            5889999997764     1234444321 113457778886   47889999999998888653  5444333

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=3.5e-09  Score=89.98  Aligned_cols=214  Identities=14%  Similarity=0.029  Sum_probs=126.2

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .++.|.+||..+ ++...   +. +...+.++.|.        ++++++++. .+ .|.+||..+++......       
T Consensus        69 ~~~~i~~~d~~~-~~~~~---~~-~~~~v~~i~~~--------~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~-------  126 (326)
T 2ghs_A           69 LERELHELHLAS-GRKTV---HA-LPFMGSALAKI--------SDSKQLIAS-DD-GLFLRDTATGVLTLHAE-------  126 (326)
T ss_dssp             GGTEEEEEETTT-TEEEE---EE-CSSCEEEEEEE--------ETTEEEEEE-TT-EEEEEETTTCCEEEEEC-------
T ss_pred             CCCEEEEEECCC-CcEEE---EE-CCCcceEEEEe--------CCCeEEEEE-CC-CEEEEECCCCcEEEEee-------
Confidence            456788888876 54322   22 34578889998        778777654 33 48888876654211000       


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecC----CeEEEEeccCC
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----KTMMIWQPEKT  158 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~  158 (351)
                                               ... .....+.++.++      +++++      +++...+    +...||.+.. 
T Consensus       127 -------------------------~~~~~~~~~~~~i~~d------~~G~l------~v~~~~~~~~~~~~~l~~~~~-  168 (326)
T 2ghs_A          127 -------------------------LESDLPGNRSNDGRMH------PSGAL------WIGTMGRKAETGAGSIYHVAK-  168 (326)
T ss_dssp             -------------------------SSTTCTTEEEEEEEEC------TTSCE------EEEEEETTCCTTCEEEEEEET-
T ss_pred             -------------------------CCCCCCCCCCCCEEEC------CCCCE------EEEeCCCcCCCCceEEEEEeC-
Confidence                                     000 112357889999      67776      6654322    2233444433 


Q ss_pred             CcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcc--cC-cccCcccccccccccccEEEEEeecCC
Q 048511          159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNV--GV-DIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~--~~-~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                       +.... +.     ........++|+|+++.++.+. .++.|.+||+.  ++ ..........+......+..+++.++|
T Consensus       169 -g~~~~-~~-----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G  241 (326)
T 2ghs_A          169 -GKVTK-LF-----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  241 (326)
T ss_dssp             -TEEEE-EE-----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             -CcEEE-ee-----CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence             43322 11     1122457899999998776554 56899999986  43 211111122222334567889999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe-eeCCCcEE-EEecCC
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII-QGKGNHRF-VSGADE  297 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l-~s~~~d  297 (351)
                      .++++...++.|.+||. +++          .+..+..+...+++++|. +  ++..| ++...+
T Consensus       242 ~lwva~~~~~~v~~~d~-~g~----------~~~~i~~~~~~~~~~af~g~--d~~~L~vt~~~~  293 (326)
T 2ghs_A          242 HIWNARWGEGAVDRYDT-DGN----------HIARYEVPGKQTTCPAFIGP--DASRLLVTSARE  293 (326)
T ss_dssp             CEEEEEETTTEEEEECT-TCC----------EEEEEECSCSBEEEEEEEST--TSCEEEEEEBCT
T ss_pred             CEEEEEeCCCEEEEECC-CCC----------EEEEEECCCCCcEEEEEecC--CCCEEEEEecCC
Confidence            88777766789999998 343          222233444568999998 6  65544 444444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=4e-11  Score=103.11  Aligned_cols=148  Identities=6%  Similarity=-0.029  Sum_probs=107.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-------cceEEEEEeccccccccceEEEEEcCCCC
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-------GIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .++.++++      +...+      +++|+.++ +++|++....       +.......    ..... |+.++|  +++
T Consensus        39 ~~nlLais------~~~gl------l~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~----~~lp~-V~~l~f--d~~   98 (388)
T 1xip_A           39 SLQNLDIS------NSKSL------FVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE----KEIPD-VIFVCF--HGD   98 (388)
T ss_dssp             CCBCEEEE------TTTTE------EEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE----EECTT-EEEEEE--ETT
T ss_pred             cccEEEEc------CCCCE------EEEeCCCE-EEEEEhhHhhhhhccccccccceEE----eeCCC-eeEEEE--CCC
Confidence            58889999      66677      88888875 6669977521       00110011    12344 999999  899


Q ss_pred             EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec
Q 048511          189 SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA  268 (351)
Q Consensus       189 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  268 (351)
                      +|+++ .++.|++||+++..     .......|...+.++.+.+.  .+++++.||.|.+||+.++.          .. 
T Consensus        99 ~L~v~-~~~~l~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----------~~-  159 (388)
T 1xip_A           99 QVLVS-TRNALYSLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----------TK-  159 (388)
T ss_dssp             EEEEE-ESSEEEEEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC----------EE-
T ss_pred             EEEEE-cCCcEEEEEchhhh-----ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc----------cc-
Confidence            99998 88999999997753     22334456667888777654  38888999999999998775          11 


Q ss_pred             cccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          269 RPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                         .+...|+|++|+|  +|  ++.|..||.+++|+.++..
T Consensus       160 ---~~~~~Vs~v~WSp--kG--~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          160 ---QLAQNVTSFDVTN--SQ--LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             ---EEEESEEEEEECS--SE--EEEEETTSCEEEEEEETTE
T ss_pred             ---cccCCceEEEEcC--Cc--eEEEEcCCcEEEEcCCCcc
Confidence               1345699999999  67  6788899999999877444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=9.3e-09  Score=86.14  Aligned_cols=214  Identities=13%  Similarity=0.045  Sum_probs=135.4

Q ss_pred             cCCceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511           28 HTDWIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        28 h~~~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (351)
                      +..-.-+..|+        + ++.++++...++.|..||..++... ..                               
T Consensus        11 ~~~~~Egp~w~--------~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-------------------------------   50 (297)
T 3g4e_A           11 NCRCGESPVWE--------EVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-------------------------------   50 (297)
T ss_dssp             CCSBEEEEEEE--------TTTTEEEEEETTTTEEEEEETTTCCEE-EE-------------------------------
T ss_pred             CCccccCCeEE--------CCCCEEEEEECCCCEEEEEECCCCcEE-EE-------------------------------
Confidence            33445578888        5 4567777777899999998865421 00                               


Q ss_pred             EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511          107 ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       107 ~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (351)
                           .....+.++++.      +++++      +++.  ++.|.+||..+  +........ ........+..++++|+
T Consensus        51 -----~~~~~~~~i~~~------~dG~l------~v~~--~~~l~~~d~~~--g~~~~~~~~-~~~~~~~~~~di~~d~d  108 (297)
T 3g4e_A           51 -----TMDAPVSSVALR------QSGGY------VATI--GTKFCALNWKE--QSAVVLATV-DNDKKNNRFNDGKVDPA  108 (297)
T ss_dssp             -----ECSSCEEEEEEB------TTSSE------EEEE--TTEEEEEETTT--TEEEEEEEC-CTTCSSEEEEEEEECTT
T ss_pred             -----eCCCceEEEEEC------CCCCE------EEEE--CCeEEEEECCC--CcEEEEEec-CCCCCCCCCCCEEECCC
Confidence                 123568899999      67776      6554  56799999987  443322221 11112345788999999


Q ss_pred             CCEEEEEeeC---------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCC--Cc
Q 048511          187 GRSILAHGYG---------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPW--KN  254 (351)
Q Consensus       187 ~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~--~~  254 (351)
                      |+++++....         ..-.+|.+....    . ...+.......+.++|+|+++.|+ +.+.++.|.+||+.  ++
T Consensus       109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G  183 (297)
T 3g4e_A          109 GRYFAGTMAEETAPAVLERHQGALYSLFPDH----H-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG  183 (297)
T ss_dssp             SCEEEEEEECCSBTTBCCTTCEEEEEECTTS----C-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred             CCEEEecCCcccccccccCCCcEEEEEECCC----C-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence            9966654332         234555554321    1 122223344568899999998764 45567899999873  33


Q ss_pred             cccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      ..     ...+.+..+..+...+..+++.+  ++++.++...++.|.+||.. ++.+..+..
T Consensus       184 ~~-----~~~~~~~~~~~~~~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          184 QI-----SNRRSVYKLEKEEQIPDGMCIDA--EGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             CE-----EEEEEEEECCGGGCEEEEEEEBT--TSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             cc-----cCcEEEEECCCCCCCCCeeEECC--CCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            31     01112222323334578899988  88888888888999999987 777766653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.21  E-value=2.2e-09  Score=92.09  Aligned_cols=259  Identities=9%  Similarity=-0.029  Sum_probs=157.4

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccceee
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~   76 (351)
                      +|.++|..+ +  +.+.++..-..+  .+.++        +++++++.+.          .+++|.+||+.+.+....+.
T Consensus        47 ~vsvID~~t-~--~v~~~i~vG~~P--~i~~s--------pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGC-G--VTLGHSLGAFLS--LAVAG--------HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTT-T--EEEEEEEECTTC--EEEEC--------TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCC-C--eEEEEEeCCCCC--ceEEC--------CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            888999988 6  455666644455  79999        8898888876          47899999999998877765


Q ss_pred             ccc------ccceeeeEeeecCCeEEecCC--ceeEEEEEeccccccceEEEE------ecCCCCCCCCCcccCCCceeE
Q 048511           77 STY------RKEVISLASYIEGPVLVAGSS--SYQVSVESLLIGHEDWVYSVQ------WEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        77 ~~~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~h~~~v~~l~------~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .+.      ......++++|+|+.++++..  ...+.+ ..+...+  +..+.      +.      +++..     .++
T Consensus       114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V-~~iD~~t--v~~i~v~~~~~~~------p~g~~-----~~~  179 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL-SVPGASD--DQLTKSASCFHIH------PGAAA-----THY  179 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE-EETTTEE--EEEEECSSCCCCE------EEETT-----EEE
T ss_pred             CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE-EEEchhh--ceEEECCCceEEc------cCCCe-----EEE
Confidence            431      135678999999999988753  233433 1111111  22222      22      22221     155


Q ss_pred             EeecCCeEEEEeccCCC---cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511          143 SASMDKTMMIWQPEKTT---GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                      +.+.|+.+.+.|+....   ++...... ........+.   . .+++..++..+. +.+.+.|+.+...   +.+..+.
T Consensus       180 ~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~---~v~~~~~  250 (368)
T 1mda_H          180 LGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA---TMKAAID  250 (368)
T ss_dssp             CCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC---EEECCCC
T ss_pred             EEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc---eEEEEEE
Confidence            66778888888876400   11110000 0011112233   3 555665555555 8999999865321   1111111


Q ss_pred             -------c---ccccEEEEEeecCCCEEEEEeC---------CCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          220 -------G---HFAAVMDISWSRSSDYLLSVSH---------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       220 -------~---~~~~v~~v~~sp~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                             .   .......++++|+++.++.+..         ++.+.++|+.+.+          .+.++... .....+
T Consensus       251 ~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------vv~~i~vg-~~p~gi  319 (368)
T 1mda_H          251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----------TSGPISNG-HDSDAI  319 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----------EEECCEEE-EEECEE
T ss_pred             eccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----------EEEEEECC-CCcceE
Confidence                   0   1111222689999988876533         2356699998887          44444333 258899


Q ss_pred             EEeeeCCCc-EEEEec-CCCeEEEEecC-chhhhcee
Q 048511          281 TIIQGKGNH-RFVSGA-DEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       281 ~~~~~~~~~-~l~s~~-~dg~v~vw~~~-~~~~~~~~  314 (351)
                      +|++  |++ ++++.. .++.|.++|+. .+.++++.
T Consensus       320 ~~s~--Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          320 IAAQ--DGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EECC--SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EECC--CCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            9999  776 567776 69999999987 66666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=9.6e-09  Score=86.40  Aligned_cols=229  Identities=11%  Similarity=0.026  Sum_probs=137.2

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .+..+........|+        ++++ ++++...++.|..|+.. +.. ... .........+++.++|+++++.....
T Consensus        39 ~l~~~~~~~egp~~~--------~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~  107 (305)
T 3dr2_A           39 TLYDQATWSEGPAWW--------EAQRTLVWSDLVGRRVLGWRED-GTV-DVL-LDATAFTNGNAVDAQQRLVHCEHGRR  107 (305)
T ss_dssp             EEECCCSSEEEEEEE--------GGGTEEEEEETTTTEEEEEETT-SCE-EEE-EESCSCEEEEEECTTSCEEEEETTTT
T ss_pred             EEecCCcCccCCeEe--------CCCCEEEEEECCCCEEEEEeCC-CCE-EEE-eCCCCccceeeECCCCCEEEEECCCC
Confidence            334445567789999        7787 66777788999999874 332 212 22234567888999999777654433


Q ss_pred             eEEEEE------ec----ccc-ccceEEEEecCCCCCCCCCcccCCCceeEE----eec-------------CCeEEEEe
Q 048511          103 QVSVES------LL----IGH-EDWVYSVQWEPPSTAPSDGVSCQQPSSILS----ASM-------------DKTMMIWQ  154 (351)
Q Consensus       103 ~~~~~~------~~----~~h-~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd  154 (351)
                      .+..+.      .+    .+. ...+..+++.      ++|++      +++    |..             .+.|..||
T Consensus       108 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d------~dG~l------~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A          108 AITRSDADGQAHLLVGRYAGKRLNSPNDLIVA------RDGAI------WFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             EEEEECTTSCEEEEECEETTEECSCCCCEEEC------TTSCE------EEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeccCCCccCCCCCEEEC------CCCCE------EEeCcCCCccccccccccccccCCCeEEEEc
Confidence            332221      11    111 1235678888      78887      776    332             24577777


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcccCcccccccccccccEEEE
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI  228 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v  228 (351)
                      ..+  +.......       ......++|+|+++.|+++...      +.|.+|++..............  ....+..+
T Consensus       176 ~~~--g~~~~~~~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi  244 (305)
T 3dr2_A          176 PDG--SPLQRMAD-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGF  244 (305)
T ss_dssp             SSS--CCCEEEEE-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSE
T ss_pred             CCC--CcEEEEec-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeE
Confidence            655  43322111       1235789999999988877765      7899999875421000111111  23345678


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      ++.++|++.++ +.+ .|.+|+.. ++          .+..+..+. .+.+++|.+  +++.|..++.++..++
T Consensus       245 ~~d~~G~lwv~-~~~-gv~~~~~~-g~----------~~~~~~~~~-~~~~~~f~~--d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          245 CVDRGGWLWSS-SGT-GVCVFDSD-GQ----------LLGHIPTPG-TASNCTFDQ--AQQRLFITGGPCLWML  302 (305)
T ss_dssp             EECTTSCEEEC-CSS-EEEEECTT-SC----------EEEEEECSS-CCCEEEECT--TSCEEEEEETTEEEEE
T ss_pred             EECCCCCEEEe-cCC-cEEEECCC-CC----------EEEEEECCC-ceeEEEEeC--CCCEEEEEcCCeEEEE
Confidence            99999995554 444 49999984 33          122222222 488899997  7777777666655444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.16  E-value=4.6e-09  Score=98.65  Aligned_cols=241  Identities=12%  Similarity=0.027  Sum_probs=142.0

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEe-----eCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSS-----SQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      +|...+..++|+        |++++||-+     +.+.+|++||+.+++.+......  .....++|+ |++.|+....+
T Consensus       126 ~~~~~l~~~~~S--------pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          126 DGTTALDQLSFS--------RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             TSCCEEEEEEEC--------TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESS
T ss_pred             CCcEEEEEEEEC--------CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEec
Confidence            355578889999        889988843     33357999999998754432211  113577899 99877765433


Q ss_pred             -------------eeEEEEEe------------ccc-cccceEEEEecCCCCCCCCCcccCCCceeEEeec----CCeEE
Q 048511          102 -------------YQVSVESL------------LIG-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM----DKTMM  151 (351)
Q Consensus       102 -------------~~~~~~~~------------~~~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~----d~~i~  151 (351)
                                   ..+..+..            ... |...+..+.|+      +|+++      |+....    ++.|.
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S------pDg~~------l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT------EDDRF------LLISAANSTSGNRLY  262 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC------TTSCE------EEEEEESSSSCCEEE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc------CCCCE------EEEEEccCCCCcEEE
Confidence                         12333221            112 33356788999      78887      654432    35899


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eC---CeEEEEEcccCcccCcccccccccccccEEE
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      ++|+...+.... .+.     .+....... +++++..|+..+ .+   +.|..+|+.++....   ...+..|...+. 
T Consensus       263 ~~d~~~~~~~~~-~l~-----~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~-  331 (693)
T 3iuj_A          263 VKDLSQENAPLL-TVQ-----GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH---WRDLIPERQQVL-  331 (693)
T ss_dssp             EEETTSTTCCCE-EEE-----CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEECCCSSCE-
T ss_pred             EEECCCCCCceE-EEe-----CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---cEEEecCCCCEE-
Confidence            999987332332 232     223333443 566666555444 33   689999998764211   234445555554 


Q ss_pred             EEeecCCCEEEEEeC-CC--cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC----CeE
Q 048511          228 ISWSRSSDYLLSVSH-DQ--TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE----KVA  300 (351)
Q Consensus       228 v~~sp~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----g~v  300 (351)
                       .|++++++|+.... ++  .|++||+..+.        ...+..  .....+..+.+++  ++..|+....+    +.+
T Consensus       332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~--------~~~l~~--p~~~~~~~~~~~~--d~~~l~~~~ss~~tP~~l  398 (693)
T 3iuj_A          332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKR--------VREVAL--PGLGSVSGFNGKH--DDPALYFGFENYAQPPTL  398 (693)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEEECTTSCE--------EEEECC--SSSSEEEECCCCT--TCSCEEEEEECSSSCCEE
T ss_pred             -EEEEECCEEEEEEEECCeeEEEEEECCCCe--------eEEeec--CCCceEEeeecCC--CCCEEEEEecCCCCCCEE
Confidence             88999988876654 43  68999987443        112211  1223466666766  55555443333    789


Q ss_pred             EEEecCchhhhcee
Q 048511          301 RVFEAPLSFLKTLN  314 (351)
Q Consensus       301 ~vw~~~~~~~~~~~  314 (351)
                      ..||+.+.....+.
T Consensus       399 ~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          399 YRFEPKSGAISLYR  412 (693)
T ss_dssp             EEECTTTCCEEEEE
T ss_pred             EEEECCCCeEEEEE
Confidence            99998643333333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.15  E-value=8.4e-08  Score=82.89  Aligned_cols=221  Identities=7%  Similarity=-0.081  Sum_probs=125.9

Q ss_pred             CCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN   74 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~   74 (351)
                      .++.|.+||..+ .+.  +..+.--       ...-..+.|+        +++++|+.+..  ++.|.++| .+++....
T Consensus        95 ~~~~v~viD~~t-~~~--~~~i~~~~~~~~~~g~~p~~~~~s--------pDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H           95 RTDYVEVFDPVT-FLP--IADIELPDAPRFDVGPYSWMNANT--------PNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             CCCeEEEEECCC-CcE--EEEEECCCccccccCCCccceEEC--------CCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            467899999987 533  3333211       1234578999        88999998874  57899999 88766544


Q ss_pred             -eecccc------cceeeeEeeecCCeEEecCCceeEEEEEe---ccccccce-EEEEecCCCCCCCCCcccCCCceeEE
Q 048511           75 -TQSTYR------KEVISLASYIEGPVLVAGSSSYQVSVESL---LIGHEDWV-YSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        75 -~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~h~~~v-~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                       +.....      ....-+..+++|..++... .+.......   ......++ ....+.      +++..      ++.
T Consensus       163 ~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~------~~~  229 (373)
T 2mad_H          163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA------NKSGR------IVW  229 (373)
T ss_pred             EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE------ecCCE------EEE
Confidence             332110      0001122333444433333 222110000   00011111 122334      33333      344


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCc
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVD  208 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~  208 (351)
                      .+..+.+.+.|+.......+..+.+..     ..........+.++|+++.++++..          ++.|.++|+.+. 
T Consensus       230 ~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-  308 (373)
T 2mad_H          230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-  308 (373)
T ss_pred             EcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-
Confidence            446789999999763223333332111     0011223445789999998887653          358999999886 


Q ss_pred             ccCcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV  255 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~  255 (351)
                          +.+.++.. ......+.|+|||+ +++++. .++.|.++|..+.+
T Consensus       309 ----~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          309 ----QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ----EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence                34555542 33578999999999 777776 48999999998887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=5.8e-09  Score=89.30  Aligned_cols=228  Identities=10%  Similarity=0.012  Sum_probs=136.6

Q ss_pred             CceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee--CCCcEEEEecCCCcccceeecccccceeeeEeeecCCe
Q 048511           17 GKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS--QDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        17 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      ++++.+..+.   ..+..|+++        ++++++++..  .++.++||.+.++. +...              |+.. 
T Consensus         7 g~~~~v~~~~---~~p~~va~~--------~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~--------------p~~~-   59 (343)
T 2qe8_A            7 DRLEVVAELS---LAPGNITLT--------PDGRLFLSLHQFYQPEMQVAELTQDG-LIPF--------------PPQS-   59 (343)
T ss_dssp             -CCEEEEEES---SCEEEEEEC--------TTSCEEEEECGGGCCSCSEEEEETTE-EEES--------------CCCC-
T ss_pred             ceeEEEEEcC---CCcceEEEC--------CCCCEEEEeCCCCCCceEEEEECCCC-eecC--------------CCcc-
Confidence            4445555544   678999999        8899988864  23436677665221 1100              0000 


Q ss_pred             EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-----CCeEEEEeccCCCcceEEEEEec
Q 048511           95 LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-----DKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus        95 l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                                   .....|...+..+++.      +++++      +++-..     +..|.+||+.+  ++.+..+.+.
T Consensus        60 -------------~~~~~~~~~p~gv~~d------~~g~L------~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~  112 (343)
T 2qe8_A           60 -------------GNAIITFDTVLGIKSD------GNGIV------WMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLP  112 (343)
T ss_dssp             -------------SSCCCCCSCEEEEEEC------SSSEE------EEEECHHHHTSCCEEEEEETTT--TEEEEEEECC
T ss_pred             -------------cCcccceeEeeEEEEc------CCCcE------EEEcCCCCcCCCCeEEEEECCC--CeEEEEEECC
Confidence                         0012355679999999      67776      665544     57899999988  7666666542


Q ss_pred             c-ccccccceEEEEEcCCCCEE-EEEe---eCCeEEEEEcccCcccCcccccccccc-----------------------
Q 048511          170 E-LSHSALGFYGGHWSPDGRSI-LAHG---YGGAFHLWRNVGVDIDNWQPQKVPSGH-----------------------  221 (351)
Q Consensus       170 ~-~~~~~~~i~~i~~~~~~~~l-~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~-----------------------  221 (351)
                      . ...+...+..+++++++..+ ++-.   .++.|.+||+.+++.     ...+.+|                       
T Consensus       113 ~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-----~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~  187 (343)
T 2qe8_A          113 PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-----ARVLQGYPGIAPEDIDLVIDGVPVQIGQPD  187 (343)
T ss_dssp             TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-----EEECTTCTTTSCCSCCCEETTEECBEECTT
T ss_pred             hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-----EEEecCCCcccccccceeECCEEEEeccCC
Confidence            1 11223456889999865555 4444   578999999876532     1111110                       


Q ss_pred             ------cccEEEEEeecCCCEEEEEeCCC-cEEEEcCCC---ccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          222 ------FAAVMDISWSRSSDYLLSVSHDQ-TTRVFAPWK---NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       222 ------~~~v~~v~~sp~~~~l~s~~~dg-~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                            ...+..|+|+|+++.|+.+..++ .+..++...   .....  ...+..+. ..++......+++++  ++.++
T Consensus       188 g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~g~~g~pdgia~d~--~G~l~  262 (343)
T 2qe8_A          188 GTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD--AELGSKIE-RYSEKPICDGISIDK--DHNIY  262 (343)
T ss_dssp             SCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH--HHHHTTCE-EEEECCSCSCEEECT--TCCEE
T ss_pred             CceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh--hhhhcceE-ecccCCCCceEEECC--CCCEE
Confidence                  12368899999999888877665 444444311   10000  00000000 012223466789998  89999


Q ss_pred             EEecCCCeEEEEec-Cch
Q 048511          292 VSGADEKVARVFEA-PLS  308 (351)
Q Consensus       292 ~s~~~dg~v~vw~~-~~~  308 (351)
                      ++...++.|.+||. .++
T Consensus       263 va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          263 VGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EEEGGGTEEEEEETTTTE
T ss_pred             EEccCCCeEEEEECCCCC
Confidence            99999999999998 565

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.14  E-value=1.1e-08  Score=96.86  Aligned_cols=236  Identities=14%  Similarity=0.094  Sum_probs=137.9

Q ss_pred             CCccEEEEeeCCCc---EEEEecCC----Ccccceeec------ccccceeeeEeeecCCeEEecCCc-----eeEEEEE
Q 048511           47 AISILLVSSSQDKV---IRIWKLAL----RGSSANTQS------TYRKEVISLASYIEGPVLVAGSSS-----YQVSVES  108 (351)
Q Consensus        47 ~~~~~l~t~~~dg~---i~iwd~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~  108 (351)
                      ++|++++....++.   -.+|....    +.....+..      ..........|+|||+.++.+...     ..+.++.
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            56777776654433   55665542    122121111      111245678999999998875332     4455544


Q ss_pred             ecccc-----ccc--eEEEEecCCCCCCCCCcccCCCceeEEeecCCe--------------EEEEeccCCCcceEEEEE
Q 048511          109 LLIGH-----EDW--VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT--------------MMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus       109 ~~~~h-----~~~--v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~--------------i~iwd~~~~~~~~~~~~~  167 (351)
                      .-.+.     ...  +..++|+      +| +.      |+.++.++.              |++|++.+........+.
T Consensus       196 l~tg~~~~~~~~~~~~~~~~ws------pD-~~------l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~  262 (741)
T 1yr2_A          196 VADGKPLADELKWVKFSGLAWL------GN-DA------LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA  262 (741)
T ss_dssp             TTTCCEEEEEEEEEESCCCEES------TT-SE------EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             CCCCCCCCccCCCceeccEEEE------CC-CE------EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence            32221     111  2467899      67 77      777776554              889998763221111111


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH  242 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~  242 (351)
                         ...+...+..+.|+|+|++|+..+.++     .|++||+.++..   .+...+..+...+... ++|+++.|+..+.
T Consensus       263 ---~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~  335 (741)
T 1yr2_A          263 ---TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDLKAQWDF-VDGVGDQLWFVSG  335 (741)
T ss_dssp             ---CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred             ---cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCCCceEEE-EeccCCEEEEEEC
Confidence               122333588999999999998887654     899999987521   1023333444444444 3588888877765


Q ss_pred             ----CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec--Cchhhhce
Q 048511          243 ----DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA--PLSFLKTL  313 (351)
Q Consensus       243 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~--~~~~~~~~  313 (351)
                          ++.|.+||+.++.      ..|..+.  ..+...+..+++..   +.++++...|+..+||.+  .++..+.+
T Consensus       336 ~~~~~~~l~~~d~~~~~------~~~~~l~--~~~~~~l~~~~~~~---~~lv~~~~~dg~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          336 DGAPLKKIVRVDLSGST------PRFDTVV--PESKDNLESVGIAG---NRLFASYIHDAKSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             TTCTTCEEEEEECSSSS------CEEEEEE--CCCSSEEEEEEEEB---TEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred             CCCCCCEEEEEeCCCCc------cccEEEe--cCCCCeEEEEEEEC---CEEEEEEEECCEEEEEEEeCCCCceeec
Confidence                3459999987641      0233332  23334466777764   778889999998887764  45444433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=2.2e-08  Score=84.99  Aligned_cols=206  Identities=8%  Similarity=-0.030  Sum_probs=126.1

Q ss_pred             eeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511           32 IRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL  110 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  110 (351)
                      ..+..|+        ++ +.++++...++.|..||..++...                                 .   +
T Consensus        51 ~egp~~~--------~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------------------------~---~   86 (326)
T 2ghs_A           51 GEGPTFD--------PASGTAWWFNILERELHELHLASGRKT---------------------------------V---H   86 (326)
T ss_dssp             EEEEEEE--------TTTTEEEEEEGGGTEEEEEETTTTEEE---------------------------------E---E
T ss_pred             CcCCeEe--------CCCCEEEEEECCCCEEEEEECCCCcEE---------------------------------E---E
Confidence            3567788        54 556666667788988888754321                                 0   0


Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  190 (351)
                      . ....+.++.+.      +++++      +++. . ..|.+||..+  +........ ........+..++++|+|+++
T Consensus        87 ~-~~~~v~~i~~~------~dg~l------~v~~-~-~gl~~~d~~~--g~~~~~~~~-~~~~~~~~~~~i~~d~~G~l~  148 (326)
T 2ghs_A           87 A-LPFMGSALAKI------SDSKQ------LIAS-D-DGLFLRDTAT--GVLTLHAEL-ESDLPGNRSNDGRMHPSGALW  148 (326)
T ss_dssp             E-CSSCEEEEEEE------ETTEE------EEEE-T-TEEEEEETTT--CCEEEEECS-STTCTTEEEEEEEECTTSCEE
T ss_pred             E-CCCcceEEEEe------CCCeE------EEEE-C-CCEEEEECCC--CcEEEEeeC-CCCCCCCCCCCEEECCCCCEE
Confidence            0 23468899999      67776      6654 3 4499999877  443322111 001112458899999999966


Q ss_pred             EEEeeC------CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCC--Cc-cccccC
Q 048511          191 LAHGYG------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPW--KN-VASLMG  260 (351)
Q Consensus       191 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~--~~-~~~~~~  260 (351)
                      ++...+      +.|..++  +++      ...+..+......++|+|+++.|+.+ +.++.|.+||+.  ++ ...   
T Consensus       149 v~~~~~~~~~~~~~l~~~~--~g~------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---  217 (326)
T 2ghs_A          149 IGTMGRKAETGAGSIYHVA--KGK------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---  217 (326)
T ss_dssp             EEEEETTCCTTCEEEEEEE--TTE------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---
T ss_pred             EEeCCCcCCCCceEEEEEe--CCc------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---
Confidence            654432      4555555  332      12222233456789999999876544 557899999986  44 210   


Q ss_pred             ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                        ....+..+......+..+++.+  ++.+.++...++.|.+|+..++.+..+.
T Consensus       218 --~~~~~~~~~~~~~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~g~~~~~i~  267 (326)
T 2ghs_A          218 --KAEVFIDSTGIKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTDGNHIARYE  267 (326)
T ss_dssp             --CCEEEEECTTSSSEEEEEEECT--TSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             --CceEEEECCCCCCCCCeeEECC--CCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence              0011222222234467888888  7888887777789999998776655544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=2.9e-08  Score=85.92  Aligned_cols=227  Identities=10%  Similarity=0.039  Sum_probs=135.3

Q ss_pred             CCCCceEEEEEccC-CCceEEEEeee------e-cCCceeEEEeeCCcccCCCCCccEEEEeeCC------CcEEEEecC
Q 048511            2 GGLDNKIHLYRGQR-TGKFVRACELK------G-HTDWIRSLDFSLPVCTSGEAISILLVSSSQD------KVIRIWKLA   67 (351)
Q Consensus         2 g~~dg~i~vw~~~~-~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d------g~i~iwd~~   67 (351)
                      |..+++|+|+|+.+ ..+++...+++      . -...-..+...        +++ +++++..+      +.|.+.|..
T Consensus       102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~--------pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A          102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG--------PDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC--------SSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC--------CCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            55678999999874 24445555552      0 11134456677        778 77776555      789999998


Q ss_pred             CCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee--
Q 048511           68 LRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS--  145 (351)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~--  145 (351)
                      +.+...........                                ...-+.+-|+      ++++.      +++..  
T Consensus       173 T~~v~~~~~~~~~~--------------------------------~~~~Yd~~~~------p~~~~------mvsS~wg  208 (462)
T 2ece_A          173 SFEPLGKWEIDRGD--------------------------------QYLAYDFWWN------LPNEV------LVSSEWA  208 (462)
T ss_dssp             TCCEEEECCSBCTT--------------------------------CCCCCCEEEE------TTTTE------EEECBCC
T ss_pred             CCeEEEEEccCCCC--------------------------------ccccceEEEC------CCCCE------EEEccCc
Confidence            87765444322110                                1112245555      45554      55553  


Q ss_pred             -----------------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE--cCCCCEEEEEee------CCeEE
Q 048511          146 -----------------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW--SPDGRSILAHGY------GGAFH  200 (351)
Q Consensus       146 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~------dg~i~  200 (351)
                                       .+.+|.+||+.+  ++.+.++.+..   .......+.|  +|+++++++++.      +++|.
T Consensus       209 ~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~tI~vg~---~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~  283 (462)
T 2ece_A          209 VPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHSLTLGE---ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW  283 (462)
T ss_dssp             CHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEEEESCT---TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE
T ss_pred             CccccccccchhhhhhccCCEEEEEECCC--CcEeeEEecCC---CCCccceeEeeECCCCCEEEEEEeeeccCCCceEE
Confidence                             478999999998  67777766421   1223445555  999998888775      56887


Q ss_pred             EEEcccCcccCccc--------cccc-------ccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCCCccccccCccce
Q 048511          201 LWRNVGVDIDNWQP--------QKVP-------SGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       201 ~~d~~~~~~~~~~~--------~~~~-------~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      +|..+.+.....+.        ...+       .+-......|.++||+++|.++.. .+.|.+||+....       ..
T Consensus       284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~-------~~  356 (462)
T 2ece_A          284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF-------KP  356 (462)
T ss_dssp             EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT-------SC
T ss_pred             EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC-------Cc
Confidence            76664432100000        0001       001245778999999999877665 7899999986432       11


Q ss_pred             EEecccccc--------------ccceeEEEEeeeCCCcEEEEec
Q 048511          265 HEVARPQVH--------------GHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       265 ~~~~~~~~~--------------~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      +.+......              ......+++++  ||++|+++.
T Consensus       357 ~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp--DGk~LyVaN  399 (462)
T 2ece_A          357 VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR--DGRRVYVTN  399 (462)
T ss_dssp             EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT--TSSEEEEEC
T ss_pred             EEEEEEEeCCeeccccccccccCCCCCCEEEEcC--CCCEEEEEc
Confidence            122221111              01357899999  888887776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.09  E-value=1.1e-08  Score=87.76  Aligned_cols=223  Identities=5%  Similarity=-0.040  Sum_probs=134.8

Q ss_pred             CCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN   74 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~   74 (351)
                      .++.|.+||..+ .+.  +.++.--       ...-..+.|+        ++|++|+.+..  ++.|.++|+.+.+....
T Consensus       107 ~~~~VsviD~~t-~~v--~~~I~v~~g~r~~~g~~P~~~a~s--------pDGk~lyVan~~~~~~VsVID~~t~~vv~t  175 (386)
T 3sjl_D          107 RTDYVEVFDPVT-LLP--TADIELPDAPRFLVGTYPWMTSLT--------PDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  175 (386)
T ss_dssp             EEEEEEEECTTT-CCE--EEEEEETTCCCCCBSCCGGGEEEC--------TTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCC-CeE--EEEEECCCccccccCCCCceEEEc--------CCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            367899999998 643  3343311       1245679999        88999888764  68999999999887666


Q ss_pred             eecccc------cceeeeEeeecCCeEEecCCc-eeEEEEEe--ccccccceE-EEEecCCCCCCCCCcccCCCceeEEe
Q 048511           75 TQSTYR------KEVISLASYIEGPVLVAGSSS-YQVSVESL--LIGHEDWVY-SVQWEPPSTAPSDGVSCQQPSSILSA  144 (351)
Q Consensus        75 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~--~~~h~~~v~-~l~~~p~~~~~~~~~~~~~~~~l~s~  144 (351)
                      +.....      ....-+..+++|+++.+.... +.+.....  +.....++. ...|.+     +++++      ++ .
T Consensus       176 I~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-----~dG~~------~~-v  243 (386)
T 3sjl_D          176 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-----KAGRL------VW-P  243 (386)
T ss_dssp             EECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-----TTTEE------EE-E
T ss_pred             EECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-----CCCcE------EE-E
Confidence            543211      011123566777776665443 33311110  000011111 123332     45654      44 5


Q ss_pred             ecCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCcc
Q 048511          145 SMDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVDI  209 (351)
Q Consensus       145 ~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~  209 (351)
                      +.+|.|.+.|+..........+.+...     .-....+..++++++++.+++...          .+.|.++|+.+.  
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--  321 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--  321 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--
Confidence            568999999997632233333321100     011123335777999998888754          257999999887  


Q ss_pred             cCcccccccccccccEEEEEeecCCC-EEEEE-eCCCcEEEEcCCCcc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSD-YLLSV-SHDQTTRVFAPWKNV  255 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~-~~dg~i~vwd~~~~~  255 (351)
                         +.+..+.. ...+.+|.+++|++ +|++. ..++.|.++|..+++
T Consensus       322 ---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          322 ---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             ---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence               44555542 24688999999996 66664 458999999998887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=2.9e-09  Score=91.17  Aligned_cols=216  Identities=6%  Similarity=-0.012  Sum_probs=126.6

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeC-----CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-----DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      +|-..+..|++.        ++++++++-..     ++.|.+||+.+++.........                      
T Consensus        64 ~~~~~p~gv~~d--------~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~----------------------  113 (343)
T 2qe8_A           64 ITFDTVLGIKSD--------GNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP----------------------  113 (343)
T ss_dssp             CCCSCEEEEEEC--------SSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT----------------------
T ss_pred             cceeEeeEEEEc--------CCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh----------------------
Confidence            355689999999        77876665433     5789999998775433222100                      


Q ss_pred             eeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEee---cCCeEEEEeccCCCcceEEEEEec-c-------
Q 048511          102 YQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS---MDKTMMIWQPEKTTGIWMNVVTVG-E-------  170 (351)
Q Consensus       102 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~-~-------  170 (351)
                             ....+...+..+++.|     .++..      +++-.   .++.|.+||+.+  +.....+... .       
T Consensus       114 -------~~~~~~~~~~~v~vd~-----~~g~~------yvtd~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A          114 -------PITLSNSFVNDLAVDL-----IHNFV------YISDPAPDDKAALIRVDLQT--GLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             -------TTSCTTCCCCEEEEET-----TTTEE------EEEECCSGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCC
T ss_pred             -------hhcccccccceEEEec-----CCCEE------EEEcCccCCCCeEEEEECCC--CCEEEEecCCCcccccccc
Confidence                   0011233456777773     23444      55555   677888888876  4333222100 0       


Q ss_pred             --ccc--------------cccceEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcc---cCccccc--ccccccccEEEE
Q 048511          171 --LSH--------------SALGFYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDI---DNWQPQK--VPSGHFAAVMDI  228 (351)
Q Consensus       171 --~~~--------------~~~~i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~---~~~~~~~--~~~~~~~~v~~v  228 (351)
                        ..+              ....+..++|+|+++.|+.+..++ .+..++......   .......  ...++......+
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence              000              012367899999999888887765 555555421100   0000011  111334456779


Q ss_pred             EeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          229 SWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       229 ~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      +++++|.++++...++.|.+||..+++        +..+... .+...++.++|.+  ++.++++.+..+.+-+|
T Consensus       254 a~d~~G~l~va~~~~~~V~~~d~~~G~--------~~~~~~~-~~~~~p~~va~~~--~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSAIGVITSADRA--------YKLLVTD-EKLSWTDSFNFGS--DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EECTTCCEEEEEGGGTEEEEEETTTTE--------EEEEEEC-GGGSCEEEEEECT--TSCEEEEECCGGGSGGG
T ss_pred             EECCCCCEEEEccCCCeEEEEECCCCC--------EEEEEEC-CceecCCeeEECC--CCcEEEEeCcccccccc
Confidence            999999999988889999999984443        1122211 1234578999988  78888887755544333

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.08  E-value=2.2e-11  Score=105.42  Aligned_cols=188  Identities=11%  Similarity=0.005  Sum_probs=97.7

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      -++..+++++.|+.|..||..+++.......                                     +.+.+..+.   
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------~~~~s~p~~---   46 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------DPVLQVPTH---   46 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------------------------CCSCCCC-----
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------------------------CCceecceE---
Confidence            3577899999999999999998876543321                                     122222333   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE-EEEEcCCCCEEEEEeeCCeEEEEEcc
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY-GGHWSPDGRSILAHGYGGAFHLWRNV  205 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~dg~i~~~d~~  205 (351)
                         .++.+      +++++.|+.|+.||.++  ++.+.......    ...+. +..+. .+..+++++.++.|+.||..
T Consensus        47 ---~~g~~------~v~~s~dg~l~a~d~~t--G~~~w~~~~~~----~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~  110 (369)
T 2hz6_A           47 ---VEEPA------FLPDPNDGSLYTLGSKN--NEGLTKLPFTI----PELVQASPCRS-SDGILYMGKKQDIWYVIDLL  110 (369)
T ss_dssp             ------CC------EEECTTTCCEEEC-------CCSEECSCCH----HHHHTTCSCC------CCCCEEEEEEEEECCC
T ss_pred             ---cCCCE------EEEeCCCCEEEEEECCC--CceeeeeeccC----ccccccCceEe-cCCEEEEEeCCCEEEEEECC
Confidence               45666      88888999999999988  44332222110    00010 00111 34567888899999999999


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      +++     .+..+..+.    ...++|++..+++++.|+.|+.||.++++      ..|..-.    +.  ....++.. 
T Consensus       111 tG~-----~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~------~~W~~~~----~~--~~~~~~~~-  168 (369)
T 2hz6_A          111 TGE-----KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE------LRWNATY----FD--YAASLPED-  168 (369)
T ss_dssp             -------------------------------EEEEEEEEEEECCCSSSSS------CCCEEEE----EE--ECCBCCCC-
T ss_pred             CCc-----EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCC------EEEeEec----cc--ccCccccC-
Confidence            884     333443332    23456788889999999999999999887      2343211    10  12222322 


Q ss_pred             CCC---cEEEEecCCCeEEEEecC-chhhhce
Q 048511          286 KGN---HRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       286 ~~~---~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                       +.   ..+++++.||.|+.||.. ++.+..+
T Consensus       169 -~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          169 -DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             -CTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             -CccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence             21   456778889999999985 6655443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.07  E-value=3.9e-08  Score=86.13  Aligned_cols=214  Identities=13%  Similarity=0.046  Sum_probs=132.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCccccee---ecc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANT---QST   78 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~---~~~   78 (351)
                      .++.|++||.++ +....+  ... ..... ++|+        ++++.|+.+..++  .|.+|+..........   ...
T Consensus       150 ~~~~I~~id~~~-g~~~~~--~~~-~~~~~-ia~~--------~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~  216 (409)
T 3hrp_A          150 DDPRVRLISVDD-NKVTTV--HPG-FKGGK-PAVT--------KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST  216 (409)
T ss_dssp             TTTEEEEEETTT-TEEEEE--EET-CCBCB-CEEC--------TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT
T ss_pred             CCCcEEEEECCC-CEEEEe--ecc-CCCCc-eeEe--------cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch
Confidence            457899999887 644332  222 23334 8899        7888888888766  7888887655432222   011


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEEEe------------ccccccce--EEEEecCCCCCCCCCcccCCCceeEEe
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVESL------------LIGHEDWV--YSVQWEPPSTAPSDGVSCQQPSSILSA  144 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~h~~~v--~~l~~~p~~~~~~~~~~~~~~~~l~s~  144 (351)
                      .......+++++++..|++....+.+..+..            ..++...-  ..++|+|     .++.+      +++-
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p-----~~g~l------yv~d  285 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF-----VDSNF------YMSD  285 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET-----TTTEE------EEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC-----CCCEE------EEEe
Confidence            2345678889995444444555555543321            11111111  2889994     25666      7777


Q ss_pred             ecCCeEEEEeccCCCcceEEEEEecc-cc---------ccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcc
Q 048511          145 SMDKTMMIWQPEKTTGIWMNVVTVGE-LS---------HSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       145 ~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---------~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~  213 (351)
                      ..++.|+.|+...  .  ...+.-.. ..         ..-.....++++++++++++-. .++.|+.|++.++.     
T Consensus       286 ~~~~~I~~~~~~g--~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-----  356 (409)
T 3hrp_A          286 QNLSSVYKITPDG--E--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-----  356 (409)
T ss_dssp             TTTTEEEEECTTC--C--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-----
T ss_pred             CCCCEEEEEecCC--C--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-----
Confidence            7789999998764  2  22221100 00         0013478899999999777766 78999999976553     


Q ss_pred             cccccccc---------------cccEEEEEeecCCCEEEEEeCCCcEEEEcC
Q 048511          214 PQKVPSGH---------------FAAVMDISWSRSSDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       214 ~~~~~~~~---------------~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~  251 (351)
                       +..+.++               -.....+++++++.++++-..++.|+.+++
T Consensus       357 -v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 -VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             2222222               245889999999888888778888888765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.06  E-value=8e-11  Score=101.88  Aligned_cols=177  Identities=10%  Similarity=0.000  Sum_probs=93.8

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.||.|+.||..+ |+.  +..+..  +.+.+..+.        .++..+++++.|+.|..||..+++.+......   
T Consensus        15 gs~dg~v~a~d~~t-G~~--~W~~~~--~~~~s~p~~--------~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~---   78 (369)
T 2hz6_A           15 STLDGSLHAVSKRT-GSI--KWTLKE--DPVLQVPTH--------VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT---   78 (369)
T ss_dssp             EETTSEEEEEETTT-CCE--EEEEEC--CCSCCCC-------------CCEEECTTTCCEEEC-----CCSEECSCC---
T ss_pred             EcCCCEEEEEECCC-CCE--EEEecC--CCceecceE--------cCCCEEEEeCCCCEEEEEECCCCceeeeeecc---
Confidence            57799999999998 743  445544  455555555        56778888889999999999887654332210   


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                     ....+   ..+|.-   .++..      +++++.|+.|+.||.++  ++
T Consensus        79 -------------------------------~~~~~---~~sp~~---~~~~~------v~~g~~dg~v~a~D~~t--G~  113 (369)
T 2hz6_A           79 -------------------------------IPELV---QASPCR---SSDGI------LYMGKKQDIWYVIDLLT--GE  113 (369)
T ss_dssp             -------------------------------HHHHH---TTCSCC--------------CCCCEEEEEEEEECCC-----
T ss_pred             -------------------------------Ccccc---ccCceE---ecCCE------EEEEeCCCEEEEEECCC--Cc
Confidence                                           00001   001100   12334      77888999999999998  65


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC---CEEE
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS---DYLL  238 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~l~  238 (351)
                      .+..+..     +.    ...++|++..+++++.++.|+.||.++++.     +..+..+  ......+.++.   ..++
T Consensus       114 ~~w~~~~-----~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~-----~W~~~~~--~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          114 KQQTLSS-----AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL-----RWNATYF--DYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ----------------------------EEEEEEEEEEECCCSSSSSC-----CCEEEEE--EECCBCCCCCTTCCCCEE
T ss_pred             EEEEecC-----CC----cccccccCCEEEEEecCCEEEEEECCCCCE-----EEeEecc--cccCccccCCccccceEE
Confidence            5444431     11    134566888999999999999999988742     2222211  11223334332   4577


Q ss_pred             EEeCCCcEEEEcCCCcc
Q 048511          239 SVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       239 s~~~dg~i~vwd~~~~~  255 (351)
                      +++.||.|+.||..+++
T Consensus       178 ~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EEETSCEEEEECTTTCC
T ss_pred             EECCCCEEEEEECCCCc
Confidence            78899999999999887

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.01  E-value=1.2e-07  Score=88.61  Aligned_cols=154  Identities=10%  Similarity=0.066  Sum_probs=92.4

Q ss_pred             eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccccc----
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQKV----  217 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----  217 (351)
                      .|..+|.++  ++.+-.++......    ............+|+   .++.++.+|.++++|.++++.........    
T Consensus       276 ~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          276 SIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             EEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence            399999999  66655555321100    111222223333554   78889999999999998885310000000    


Q ss_pred             -------------------ccccc-----------ccEEEEEeecCCCEEEEEeC-------------------------
Q 048511          218 -------------------PSGHF-----------AAVMDISWSRSSDYLLSVSH-------------------------  242 (351)
Q Consensus       218 -------------------~~~~~-----------~~v~~v~~sp~~~~l~s~~~-------------------------  242 (351)
                                         +....           ..-..++++|+..++++...                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                               00000           01123688888877776532                         


Q ss_pred             --------------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          243 --------------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       243 --------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                                          +|.|+.||+.+++      ..|+.-    .+ .+.....+..  .+.+++.|+.||.++.
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~----~~-~~~~~g~~~t--agglvf~gt~dg~l~a  500 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ------AAWEVP----YV-TIFNGGTLST--AGNLVFEGSADGRVIA  500 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE------EEEEEE----ES-SSCCCCEEEE--TTTEEEEECTTSEEEE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCC------eEeEcc----CC-CCccCccceE--CCCEEEEECCCCcEEE
Confidence                                3778999998887      244432    11 2233345555  6789999999999999


Q ss_pred             EecC-chhhhceeecc
Q 048511          303 FEAP-LSFLKTLNHAT  317 (351)
Q Consensus       303 w~~~-~~~~~~~~~~~  317 (351)
                      ||.+ |+.+..++...
T Consensus       501 ~D~~tG~~lw~~~~~~  516 (689)
T 1yiq_A          501 YAADTGEKLWEQPAAS  516 (689)
T ss_dssp             EETTTCCEEEEEECSS
T ss_pred             EECCCCccceeeeCCC
Confidence            9987 88887776543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.97  E-value=2e-07  Score=87.04  Aligned_cols=148  Identities=12%  Similarity=0.104  Sum_probs=94.5

Q ss_pred             eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCC---CEEEEEeeCCeEEEEEcccCcccCccccccccc-
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDG---RSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-  220 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-  220 (351)
                      .|..+|.++  ++.+-.++......    .......+....+|   ..++.++.+|.++++|..+++.     +..+.. 
T Consensus       284 sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-----l~~~~~~  356 (677)
T 1kb0_A          284 SIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF-----ISAKNFV  356 (677)
T ss_dssp             EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-----EEEEESS
T ss_pred             EEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE-----ecccccc
Confidence            599999998  66655555321100    01122223333467   6788999999999999988753     111110 


Q ss_pred             ----------ccccE------------------------EEEEeecCCCEEEEEeC------------------------
Q 048511          221 ----------HFAAV------------------------MDISWSRSSDYLLSVSH------------------------  242 (351)
Q Consensus       221 ----------~~~~v------------------------~~v~~sp~~~~l~s~~~------------------------  242 (351)
                                ....+                        ..++++|+..++++...                        
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence                      00000                        25788998888876543                        


Q ss_pred             -------------------CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          243 -------------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       243 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                                         .+.|..||+.+++      ..|+.-     +..++....+..  ++.+++.++.||.+++|
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~-----~~~~~~~g~~~~--~g~~v~~g~~dg~l~a~  503 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------AAWSVE-----HVSPWNGGTLTT--AGNVVFQGTADGRLVAY  503 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------EEEEEE-----ESSSCCCCEEEE--TTTEEEEECTTSEEEEE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCc------EEeecC-----CCCCCcCcceEe--CCCEEEEECCCCcEEEE
Confidence                               2779999998887      344432     223345555666  67788889999999999


Q ss_pred             ecC-chhhhceeec
Q 048511          304 EAP-LSFLKTLNHA  316 (351)
Q Consensus       304 ~~~-~~~~~~~~~~  316 (351)
                      |.. ++.+.++...
T Consensus       504 D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          504 HAATGEKLWEAPTG  517 (677)
T ss_dssp             ETTTCCEEEEEECS
T ss_pred             ECCCCceeeeeeCC
Confidence            986 8888777643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.96  E-value=3e-07  Score=85.79  Aligned_cols=107  Identities=9%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEecccc------ccccce------------------------EEEEEcCCCCEE
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELS------HSALGF------------------------YGGHWSPDGRSI  190 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~i------------------------~~i~~~~~~~~l  190 (351)
                      ++.++.+|.|+++|.++  ++.+..+......      .....+                        ..++++|+...+
T Consensus       330 l~~~~~~G~l~~lD~~t--G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          330 ILHAPKNGFFFVLDRTN--GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEECCTTSEEEEEETTT--CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEECCCCEEEEEECCC--CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            88899999999999999  7766555432110      000001                        257889988888


Q ss_pred             EEEeeC-------------------------------------------CeEEEEEcccCcccCcccccccccccccEEE
Q 048511          191 LAHGYG-------------------------------------------GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       191 ~~~~~d-------------------------------------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      ++...+                                           +.|..||+.+++.     +-++. +...+..
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-----~W~~~-~~~~~~~  481 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA-----AWSVE-HVSPWNG  481 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE-----EEEEE-ESSSCCC
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE-----EeecC-CCCCCcC
Confidence            776542                                           7899999988742     22222 2333445


Q ss_pred             EEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          228 ISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       228 v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..+..++.+++.++.|+.+++||.++++
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCc
Confidence            5567778888889999999999999998

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.95  E-value=1.1e-07  Score=82.94  Aligned_cols=223  Identities=5%  Similarity=-0.030  Sum_probs=135.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeee-------cCCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccce
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKG-------HTDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSAN   74 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~   74 (351)
                      .++.|.++|..+ .+.  +..+.-       .......+.|+        +++++|+.+..  ++.|.+.|+.+.+....
T Consensus       147 ~~~~VsviD~~t-~~v--v~~I~v~g~~r~~~g~~P~~~~~s--------pDGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          147 RTDYVEVFDPVT-FLP--IADIELPDAPRFLVGTYQWMNALT--------PDNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             EEEEEEEECTTT-CCE--EEEEEETTCCCCCBSCCGGGSEEC--------TTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCC-CcE--EEEEECCCccccccCCCcceEEEc--------CCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence            467899999998 643  333321       11234578899        88999998864  57899999999877665


Q ss_pred             eecccc------cceeeeEeeecCCeEEecCCceeEEEEE--eccccccce-EEEEecCCCCCCCCCcccCCCceeEEee
Q 048511           75 TQSTYR------KEVISLASYIEGPVLVAGSSSYQVSVES--LLIGHEDWV-YSVQWEPPSTAPSDGVSCQQPSSILSAS  145 (351)
Q Consensus        75 ~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~h~~~v-~~l~~~p~~~~~~~~~~~~~~~~l~s~~  145 (351)
                      +.....      ....-+.++++|+++++....+.+....  .+.....++ ..+.|.      +++..      ++..+
T Consensus       216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~------~dg~~------~~~~s  283 (426)
T 3c75_H          216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS------LRSGR------LVWPT  283 (426)
T ss_dssp             EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC------TTTCE------EEEEB
T ss_pred             EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec------CCCCE------EEEEe
Confidence            543211      0112245566666665544333332111  111111111 123445      55555      66667


Q ss_pred             cCCeEEEEeccCCCcceEEEEEecccc-----ccccceEEEEEcCCCCEEEEEee----------CCeEEEEEcccCccc
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELS-----HSALGFYGGHWSPDGRSILAHGY----------GGAFHLWRNVGVDID  210 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~----------dg~i~~~d~~~~~~~  210 (351)
                      ..+.|.+.|+..........+.+....     ........++++|+++.+++...          ++.|.++|..+.   
T Consensus       284 ~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---  360 (426)
T 3c75_H          284 YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---  360 (426)
T ss_dssp             TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---
T ss_pred             CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---
Confidence            788999999975222222222211000     00111223689999988877653          357999999887   


Q ss_pred             CcccccccccccccEEEEEeecCCC-EEEEEe-CCCcEEEEcCCCcc
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSD-YLLSVS-HDQTTRVFAPWKNV  255 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-~dg~i~vwd~~~~~  255 (351)
                        +.+.++.. ......+.|+|+++ ++++.. .++.|.++|+.+.+
T Consensus       361 --kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          361 --ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             --CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             --eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence              44555543 23578999999999 888877 58999999998887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=3e-07  Score=79.64  Aligned_cols=245  Identities=9%  Similarity=-0.018  Sum_probs=134.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      ++.++.|..+|.++ ++..  ................          +..++.++.++.|..+|..+++...........
T Consensus       109 ~~~~g~l~a~d~~t-G~~~--W~~~~~~~~~~~p~~~----------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          109 GSEKAQVYALNTSD-GTVA--WQTKVAGEALSRPVVS----------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             EETTSEEEEEETTT-CCEE--EEEECSSCCCSCCEEE----------TTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred             EcCCCEEEEEECCC-CCEE--EEEeCCCceEcCCEEE----------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence            45678899999988 7432  3333222211112222          447777888999999999988876655432211


Q ss_pred             c----eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEE-----------------ecCCCCCCCCCcccCCCce
Q 048511           82 E----VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQ-----------------WEPPSTAPSDGVSCQQPSS  140 (351)
Q Consensus        82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~-----------------~~p~~~~~~~~~~~~~~~~  140 (351)
                      .    ......  .+..++++..++.+..+....+..  ++...                 ..|.    ..+..      
T Consensus       176 ~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~------  241 (376)
T 3q7m_A          176 LSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQM--IWQQRISQATGSTEIDRLSDVDTTPV----VVNGV------  241 (376)
T ss_dssp             ---CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCE--EEEEECCC-----------CCCCCCE----EETTE------
T ss_pred             eeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcE--EEEEecccCCCCcccccccccCCCcE----EECCE------
Confidence            0    011111  234455555555444433222211  11111                 1110    01223      


Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-  219 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-  219 (351)
                      +..++.++.+..+|.++  ++.+-....       .....+..  ++..+++++.++.|..+|..+++.     +.... 
T Consensus       242 v~~~~~~g~l~~~d~~t--G~~~w~~~~-------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~-----~w~~~~  305 (376)
T 3q7m_A          242 VFALAYNGNLTALDLRS--GQIMWKREL-------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT-----LWTQSD  305 (376)
T ss_dssp             EEEECTTSCEEEEETTT--CCEEEEECC-------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-----EEEECT
T ss_pred             EEEEecCcEEEEEECCC--CcEEeeccC-------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-----EEeecc
Confidence            77777899999999988  655443321       12333333  466788888899999999988753     22211 


Q ss_pred             cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      .....+.....  .+..|+.++.+|.|.++|..+++.      .|+    .......+.......   +..|+.++.+|.
T Consensus       306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~------~~~----~~~~~~~~~~~~~~~---~~~l~v~~~~G~  370 (376)
T 3q7m_A          306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF------VAQ----QKVDSSGFQTEPVAA---DGKLLIQAKDGT  370 (376)
T ss_dssp             TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE------EEE----EECCTTCBCSCCEEE---TTEEEEEBTTSC
T ss_pred             cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE------EEE----EecCCCcceeCCEEE---CCEEEEEeCCCE
Confidence            11111222222  245788888999999999988872      222    222222232222223   456778888999


Q ss_pred             EEEEe
Q 048511          300 ARVFE  304 (351)
Q Consensus       300 v~vw~  304 (351)
                      |..|+
T Consensus       371 l~~~~  375 (376)
T 3q7m_A          371 VYSIT  375 (376)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99887

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.93  E-value=3.5e-07  Score=76.79  Aligned_cols=204  Identities=9%  Similarity=-0.016  Sum_probs=122.7

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---c
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST---Y   79 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~   79 (351)
                      ..++.|..|+..  ++.   ..+..+...+..+++.        ++++++++...++.|.+|+.. +.........   .
T Consensus        64 ~~~~~i~~~~~~--g~~---~~~~~~~~~~~gl~~d--------~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~  129 (305)
T 3dr2_A           64 LVGRRVLGWRED--GTV---DVLLDATAFTNGNAVD--------AQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR  129 (305)
T ss_dssp             TTTTEEEEEETT--SCE---EEEEESCSCEEEEEEC--------TTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred             CCCCEEEEEeCC--CCE---EEEeCCCCccceeeEC--------CCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence            356788888873  432   3444566778999999        788877665566789999976 3322111111   1


Q ss_pred             ccceeeeEeeecCCeEEe----cCC-------------ceeEEEEEeccc------cccceEEEEecCCCCCCCCCcccC
Q 048511           80 RKEVISLASYIEGPVLVA----GSS-------------SYQVSVESLLIG------HEDWVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~----~~~-------------~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~~~~~~~~  136 (351)
                      ...+..+++.++|.++++    +..             ...+..+..-.+      .......++|+      ++++.  
T Consensus       130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~s------pdg~~--  201 (305)
T 3dr2_A          130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFS------PDEQT--  201 (305)
T ss_dssp             CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEEC------TTSSE--
T ss_pred             cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEc------CCCCE--
Confidence            123557889999998885    211             122222211001      22345778999      78876  


Q ss_pred             CCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511          137 QPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID  210 (351)
Q Consensus       137 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  210 (351)
                          |..+...      +.|.+|++..  +..........  ........++++++|+ |.++..+ .|.+|+....   
T Consensus       202 ----lyv~~~~~~~~~~~~i~~~~~~~--~~l~~~~~~~~--~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g~---  268 (305)
T 3dr2_A          202 ----LYVSQTPEQGHGSVEITAFAWRD--GALHDRRHFAS--VPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDGQ---  268 (305)
T ss_dssp             ----EEEEECCC---CCCEEEEEEEET--TEEEEEEEEEC--CSSSCCCSEEECTTSC-EEECCSS-EEEEECTTSC---
T ss_pred             ----EEEEecCCcCCCCCEEEEEEecC--CCccCCeEEEE--CCCCCCCeEEECCCCC-EEEecCC-cEEEECCCCC---
Confidence                6666554      7899999876  32111111111  1223345688999999 4444444 5999998543   


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCCCc
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT  245 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~  245 (351)
                         .+..+..+. .+.+++|+|+++.|+.++.++.
T Consensus       269 ---~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          269 ---LLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             ---EEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             ---EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence               233443333 5788999999988887776643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=9.9e-07  Score=71.62  Aligned_cols=210  Identities=9%  Similarity=0.022  Sum_probs=132.8

Q ss_pred             EEEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511           20 VRACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        20 ~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      +.+.++. |..  ....+.|+        +++.++++.+.  ++.|++.|+.+++.......                  
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~--------~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l------------------   62 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYA--------ENDTLFESTGLYGRSSVRQVALQTGKVENIHKM------------------   62 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEC--------STTEEEEEECSTTTCEEEEEETTTCCEEEEEEC------------------
T ss_pred             eEEEEEE-CCCCCCcccEEEe--------CCCeEEEECCCCCCCEEEEEECCCCCEEEEEec------------------
Confidence            4455553 553  36899999        76655555553  57999999998876543321                  


Q ss_pred             EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511           96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus        96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                                     ..+ .....+++.       .+.+      .++.-.++.+.++|..+  .+.+.++... . . .
T Consensus        63 ---------------~~~-~fgeGi~~~-------g~~l------yv~t~~~~~v~viD~~t--~~v~~~i~~g-~-~-~  108 (266)
T 2iwa_A           63 ---------------DDS-YFGEGLTLL-------NEKL------YQVVWLKNIGFIYDRRT--LSNIKNFTHQ-M-K-D  108 (266)
T ss_dssp             ---------------CTT-CCEEEEEEE-------TTEE------EEEETTCSEEEEEETTT--TEEEEEEECC-S-S-S
T ss_pred             ---------------CCC-cceEEEEEe-------CCEE------EEEEecCCEEEEEECCC--CcEEEEEECC-C-C-C
Confidence                           111 112244544       1234      55555688999999998  7777777643 0 1 1


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-----cccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-----FAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-----~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                          ...++++++.++++..++.|.++|..+.+     .+..+.-.     -..++.+.|. ++..++..-.++.|.+-|
T Consensus       109 ----g~glt~Dg~~l~vs~gs~~l~viD~~t~~-----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          109 ----GWGLATDGKILYGSDGTSILYEIDPHTFK-----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             ----CCEEEECSSSEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             ----eEEEEECCCEEEEECCCCeEEEEECCCCc-----EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence                13355678878777788999999998853     23333211     1246788888 676555555678999999


Q ss_pred             CCCccccccCccceEEecccc--------ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          251 PWKNVASLMGENSWHEVARPQ--------VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..+++..     .+-.+..+.        ......+.++|+| ....+++++.....|.+.++.
T Consensus       179 ~~tg~V~-----~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          179 AKDGTLL-----GWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TTTCCEE-----EEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCSEEEEEEEE
T ss_pred             CCCCcEE-----EEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCCeEEEEEEe
Confidence            9988721     111111110        0112468999998 234677888899999998865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=8.4e-06  Score=70.43  Aligned_cols=267  Identities=11%  Similarity=0.069  Sum_probs=141.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      ++.++.|..+|.++ ++..-...+...       ...+.+.-.         ..+..++.++.++.|..+|..+++....
T Consensus        59 ~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           59 ADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGGVT---------VSGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             ECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEEEE---------EETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EcCCCeEEEEEccC-CceeeeecCccccccccccCcccccCce---------EeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            45678999999988 754322222211       122322211         2356788888899999999998887655


Q ss_pred             eecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCC--------CCCCCCCcccCCCceeEEeec
Q 048511           75 TQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPP--------STAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--------~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      .....  ........ .+..++++..++.+..+....+.  .++.......        ... ..+..      ++.+..
T Consensus       129 ~~~~~--~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~-~~~~~------v~~g~~  196 (376)
T 3q7m_A          129 TKVAG--EALSRPVV-SDGLVLIHTSNGQLQALNEADGA--VKWTVNLDMPSLSLRGESAPT-TAFGA------AVVGGD  196 (376)
T ss_dssp             EECSS--CCCSCCEE-ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC-----CCCCCCE-EETTE------EEECCT
T ss_pred             EeCCC--ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCc--EEEEEeCCCCceeecCCCCcE-EECCE------EEEEcC
Confidence            44321  11111111 23344444444444443322221  1111111000        000 11223      777888


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccc--cceEEEEEcC--CCCEEEEEeeCCeEEEEEcccCcccCccccccccccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSA--LGFYGGHWSP--DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHF  222 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~  222 (351)
                      ++.|..+|.++  ++.+-...........  ..+..+.-.|  .+..+++++.++.+..+|..+++.     +....  .
T Consensus       197 ~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~w~~~--~  267 (376)
T 3q7m_A          197 NGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----MWKRE--L  267 (376)
T ss_dssp             TTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----EEEEC--C
T ss_pred             CCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----Eeecc--C
Confidence            99999999998  6555444322110000  0000011111  246677788899999999988742     22221  1


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .....+..  ++..++.++.++.|..+|..+++      ..|+.-.   .....+......    +..|+.++.+|.|.+
T Consensus       268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~------~~w~~~~---~~~~~~~~~~~~----~~~l~v~~~~g~l~~  332 (376)
T 3q7m_A          268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV------TLWTQSD---LLHRLLTSPVLY----NGNLVVGDSEGYLHW  332 (376)
T ss_dssp             CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC------EEEEECT---TTTSCCCCCEEE----TTEEEEECTTSEEEE
T ss_pred             CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc------EEEeecc---cCCCcccCCEEE----CCEEEEEeCCCeEEE
Confidence            22333333  35677778889999999998887      2343321   111223333332    457888888999999


Q ss_pred             EecC-chhhhcee
Q 048511          303 FEAP-LSFLKTLN  314 (351)
Q Consensus       303 w~~~-~~~~~~~~  314 (351)
                      +|.. ++.+..+.
T Consensus       333 ~d~~tG~~~~~~~  345 (376)
T 3q7m_A          333 INVEDGRFVAQQK  345 (376)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCcEEEEEe
Confidence            9976 66655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.83  E-value=2e-07  Score=79.86  Aligned_cols=216  Identities=7%  Similarity=-0.084  Sum_probs=122.5

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeec-------CCceeEEEeeCCcccCCCCCccEEEEeeC--CCcEEE--EecCCCcc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGH-------TDWIRSLDFSLPVCTSGEAISILLVSSSQ--DKVIRI--WKLALRGS   71 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~~~~~~~~l~t~~~--dg~i~i--wd~~~~~~   71 (351)
                      ..++.|.+||+.+ ++  .+.++..+       ......+.++        +++++|+.+..  +..|.+  +|..+   
T Consensus        93 ~~~~~VsviD~~T-~~--vv~~I~v~~~~~~~~g~~P~~ia~S--------pDGk~lyVan~~~~~~v~V~~iD~~t---  158 (368)
T 1mda_H           93 KRTDYVEVFDPVT-FL--PIADIELPDAPRFSVGPRVHIIGNC--------ASSACLLFFLFGSSAAAGLSVPGASD---  158 (368)
T ss_dssp             SEEEEEEEECTTT-CC--EEEEEEETTSCSCCBSCCTTSEEEC--------TTSSCEEEEECSSSCEEEEEETTTEE---
T ss_pred             CCCCEEEEEECCC-CC--EEEEEECCCccccccCCCcceEEEc--------CCCCEEEEEccCCCCeEEEEEEchhh---
Confidence            3578999999998 64  34555432       1235689999        88999998864  467888  99876   


Q ss_pred             cceeeccc------ccceeeeEeeecCCeEEecCCc-----eeEEEEE--eccccccceEEEEecCCCCCCCCCcccCCC
Q 048511           72 SANTQSTY------RKEVISLASYIEGPVLVAGSSS-----YQVSVES--LLIGHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        72 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~--~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      ...+....      .....-+..++++..+.+....     +.+....  .+.....+.   . .      +++..    
T Consensus       159 v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~------~~~~~----  224 (368)
T 1mda_H          159 DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A------NYPGM----  224 (368)
T ss_dssp             EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E------TTTTE----
T ss_pred             ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c------ccCCE----
Confidence            22221110      0011122334444444433222     2211100  011111222   2 3      34444    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCCEEEEEee-C--------CeEEEEEc
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGRSILAHGY-G--------GAFHLWRN  204 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~~l~~~~~-d--------g~i~~~d~  204 (351)
                        ++..+. +.|.+.|+.......+..+.+...     .........++++|+++.++++.. .        +.+.++|+
T Consensus       225 --~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~  301 (368)
T 1mda_H          225 --LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             --EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             --EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence              555555 899999987522222222221100     000111122689999998887644 2        35669999


Q ss_pred             ccCcccCcccccccccccccEEEEEeecCCCE-EEEEe-CCCcEEEEcCCCcc
Q 048511          205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY-LLSVS-HDQTTRVFAPWKNV  255 (351)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-l~s~~-~dg~i~vwd~~~~~  255 (351)
                      .+.     +.+..+.... ....++|+|||++ +++.. .++.|.++|+.+.+
T Consensus       302 ~t~-----~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          302 SVG-----QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSC-----CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCC-----eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            887     4455555333 5789999999984 56666 58999999998876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.82  E-value=1.2e-06  Score=81.95  Aligned_cols=107  Identities=11%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEecccc-----------------------ccc-----------cceEEEEEcCC
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-----------------------HSA-----------LGFYGGHWSPD  186 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------------------~~~-----------~~i~~i~~~~~  186 (351)
                      ++.++.+|.++++|.++  ++.+....+....                       ...           .....++++|+
T Consensus       322 v~~~~~~G~l~~lD~~t--G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~  399 (689)
T 1yiq_A          322 LMQAPKNGFFYVIDRAT--GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD  399 (689)
T ss_dssp             EEECCTTSEEEEEETTT--CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             EEEECCCCeEEEEECCC--CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC
Confidence            88889999999999998  6665433321100                       000           00123688888


Q ss_pred             CCEEEEEee---------------------------------------------CCeEEEEEcccCcccCcccccccccc
Q 048511          187 GRSILAHGY---------------------------------------------GGAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       187 ~~~l~~~~~---------------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ...+++...                                             +|.|..||+.+++.     +-++..+
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-----~W~~~~~  474 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-----AWEVPYV  474 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-----EEEEEES
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe-----EeEccCC
Confidence            887776533                                             37799999988753     3333322


Q ss_pred             cccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                       ..+....+...+.+++.++.|+.++.||.++++
T Consensus       475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             -CCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence             223334566678899999999999999999998

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.80  E-value=9.6e-06  Score=68.49  Aligned_cols=140  Identities=9%  Similarity=0.014  Sum_probs=82.5

Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcccccccccccccE
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAV  225 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v  225 (351)
                      ++.|..||...  +.......      .-.....++++|+++.|+++ ...+.|..|++.............   ..+ .
T Consensus       164 ~g~v~~~d~~~--~~~~~~~~------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P  231 (322)
T 2fp8_A          164 TGRLIKYDPST--KETTLLLK------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-P  231 (322)
T ss_dssp             CEEEEEEETTT--TEEEEEEE------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-E
T ss_pred             CceEEEEeCCC--CEEEEecc------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-C
Confidence            36788888765  33222111      11234568999999977666 456899999987532111111111   123 7


Q ss_pred             EEEEeecCCCEEEEEeC----------CCcEEEEcCCCccccccCccceEEecccccc-ccceeEEEEeeeCCCcEEEEe
Q 048511          226 MDISWSRSSDYLLSVSH----------DQTTRVFAPWKNVASLMGENSWHEVARPQVH-GHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      ..+++.++|+++++...          .+.|..+|.. ++       ....+....+. ...++++++ .  ++.++++.
T Consensus       232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-------~~~~~~~~~g~~~~~~~~~~~-~--~g~L~v~~  300 (322)
T 2fp8_A          232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-------ILEVIPLPPPFAGEHFEQIQE-H--DGLLYIGT  300 (322)
T ss_dssp             EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC-------EEEEEECCTTTTTSCCCEEEE-E--TTEEEEEC
T ss_pred             CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC-------EEEEEECCCCCccccceEEEE-e--CCEEEEee
Confidence            78999999987766544          4678888864 33       11222222111 234666766 4  57888888


Q ss_pred             cCCCeEEEEecCchh
Q 048511          295 ADEKVARVFEAPLSF  309 (351)
Q Consensus       295 ~~dg~v~vw~~~~~~  309 (351)
                      ...+.|.++++..+.
T Consensus       301 ~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          301 LFHGSVGILVYDKKG  315 (322)
T ss_dssp             SSCSEEEEEEC----
T ss_pred             cCCCceEEEeccccc
Confidence            888999999987443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.79  E-value=4.9e-07  Score=84.90  Aligned_cols=216  Identities=13%  Similarity=0.075  Sum_probs=124.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC-------------cEEEEecCC
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK-------------VIRIWKLAL   68 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-------------~i~iwd~~~   68 (351)
                      |+.+.+|++||+++ ++.... .+.+.  ....++|+         +++.|+.++.+.             .|.+|++.+
T Consensus       151 G~~~~~i~v~dl~t-g~~~~~-~~~~~--k~~~~~Ws---------Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt  217 (693)
T 3iuj_A          151 GSDWREIHLMDVES-KQPLET-PLKDV--KFSGISWL---------GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGT  217 (693)
T ss_dssp             SCCEEEEEEEETTT-CSEEEE-EEEEE--ESCCCEEE---------TTTEEEEEESSCCC-------CCCCEEEEEETTS
T ss_pred             CCceEEEEEEECCC-CCCCcc-ccCCc--eeccEEEe---------CCCEEEEEEecCcccccccccCCCcEEEEEECCC
Confidence            45557899999998 764332 23221  12456776         466777777664             399999987


Q ss_pred             Ccccce-eecc---cccceeeeEeeecCCeEEecC----CceeEEEEE---------eccccccceEEEEecCCCCCCCC
Q 048511           69 RGSSAN-TQST---YRKEVISLASYIEGPVLVAGS----SSYQVSVES---------LLIGHEDWVYSVQWEPPSTAPSD  131 (351)
Q Consensus        69 ~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~---------~~~~h~~~v~~l~~~p~~~~~~~  131 (351)
                      ...... +...   .......+.++++|+.++...    ....+.++.         .+..+....... ++      ++
T Consensus       218 ~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~------~~  290 (693)
T 3iuj_A          218 AQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD------NK  290 (693)
T ss_dssp             CGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE------EE
T ss_pred             CcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee------cc
Confidence            654222 1111   122356788999999886532    222333332         122233333333 44      33


Q ss_pred             CcccCCCceeEEeecC---CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---eEEEEEcc
Q 048511          132 GVSCQQPSSILSASMD---KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---AFHLWRNV  205 (351)
Q Consensus       132 ~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~i~~~d~~  205 (351)
                      +..     +++....+   +.|..+|+..........+.     .+...+.  .|+++++.|+....++   .|++||+.
T Consensus       291 g~~-----l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-----~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          291 GST-----LYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-----PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             TTE-----EEEEECTTCTTCEEEEEETTSCCGGGCEEEE-----CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             CCE-----EEEEECCCCCCCEEEEEeCCCCCccccEEEe-----cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            333     14444443   67999998873221122333     2333343  8889998887766543   68889887


Q ss_pred             cCcccCcccccccc-cccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCcc
Q 048511          206 GVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNV  255 (351)
Q Consensus       206 ~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~  255 (351)
                      ++.      ...+. ...+.+..+.++++++.|+....+    +.++.||+.+++
T Consensus       359 g~~------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          359 GKR------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             SCE------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCe------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            542      22222 234567788888888776655444    789999987765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.74  E-value=1.7e-06  Score=80.71  Aligned_cols=256  Identities=11%  Similarity=0.025  Sum_probs=136.0

Q ss_pred             eEEEEEccCCCceEEEEeeee-cCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeeccccccee
Q 048511            7 KIHLYRGQRTGKFVRACELKG-HTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      .+.+||..+ +++..+..+.. +.....++++.        .++++++.|+. +..+.+||..+................
T Consensus       220 ~~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~--------~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~  290 (656)
T 1k3i_A          220 LTSSWDPST-GIVSDRTVTVTKHDMFCPGISMD--------GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ  290 (656)
T ss_dssp             EEEEECTTT-CCBCCCEEEECSCCCSSCEEEEC--------TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC
T ss_pred             EEEEEeCCC-CcEEeCcccCCCCCCccccccCC--------CCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc
Confidence            578888888 66655544432 23334456777        67889999984 457999999876543322222122223


Q ss_pred             eeEeeecCCeEEecCC-ce-----eEEEEEeccccccceEEEE---ecCCCC------CCCCCcccCCCceeEEeecCC-
Q 048511           85 SLASYIEGPVLVAGSS-SY-----QVSVESLLIGHEDWVYSVQ---WEPPST------APSDGVSCQQPSSILSASMDK-  148 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~-~~-----~~~~~~~~~~h~~~v~~l~---~~p~~~------~~~~~~~~~~~~~l~s~~~d~-  148 (351)
                      +++..+++++++.|+. +.     .+.++..   .+..-..+.   ..|...      ...++.+      ++.++.++ 
T Consensus       291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~---~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~i------yv~Gg~~g~  361 (656)
T 1k3i_A          291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSP---SSKTWTSLPNAKVNPMLTADKQGLYRSDNHA------WLFGWKKGS  361 (656)
T ss_dssp             EEEECTTSCEEEECCCCCSSSCCCCEEEEET---TTTEEEEETTSCSGGGCCCCTTGGGTTTCSC------CEEECGGGC
T ss_pred             ceEEecCCeEEEEeCcccCCcccccceEeCC---CCCcceeCCCccccccccccccceeecCCce------EEEECCCCc
Confidence            4455568999888873 31     2222211   111111110   000000      0023334      56665554 


Q ss_pred             --------eEEEEeccCCCcceEEEEEeccc----cccccceEEEEEcC-CCCEEEEEeeCC-----------eEEEEEc
Q 048511          149 --------TMMIWQPEKTTGIWMNVVTVGEL----SHSALGFYGGHWSP-DGRSILAHGYGG-----------AFHLWRN  204 (351)
Q Consensus       149 --------~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~-~~~~l~~~~~dg-----------~i~~~d~  204 (351)
                              .+..||...  ..+.........    ......-.++.|.. ++++++.|+.++           .+.+||.
T Consensus       362 ~~~~~~~~~v~~yd~~~--~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~  439 (656)
T 1k3i_A          362 VFQAGPSTAMNWYYTSG--SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  439 (656)
T ss_dssp             EEECCSSSEEEEEECST--TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             EEEecCccceeeeecCC--cceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence                    467888887  554433321111    00111223444543 677778877543           6778887


Q ss_pred             ccCcccCccccc--ccccccccEEEEEeecCCCEEEEEeCC-----------CcEEEEcCCCccccccCccceEEecccc
Q 048511          205 VGVDIDNWQPQK--VPSGHFAAVMDISWSRSSDYLLSVSHD-----------QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       205 ~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      .+..   |..+.  .+. ....-.+++..|++++++.|+.+           ..+.+||..+.        .|..+....
T Consensus       440 ~~~~---W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--------~W~~~~~~~  507 (656)
T 1k3i_A          440 GTSP---NTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--------TFYKQNPNS  507 (656)
T ss_dssp             TSCC---EEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--------EEEECCCCS
T ss_pred             CCCC---eeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--------ceeecCCCC
Confidence            6653   22221  111 11112345567899999998864           46889998654        466655443


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecC
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      .....-.+..+.+  ++++++.|+.
T Consensus       508 ~~R~~hs~a~ll~--dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLP--DGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECT--TSCEEEEECC
T ss_pred             CccccccHhhcCC--CcEEEecCCC
Confidence            2222223344556  8999999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.72  E-value=2.1e-05  Score=64.42  Aligned_cols=229  Identities=9%  Similarity=0.013  Sum_probs=133.5

Q ss_pred             CceEEEEEccCCCceEE---EEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            5 DNKIHLYRGQRTGKFVR---ACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      .+.|+.++++. .....   ...+......+..++|+        +++ .++++-..++.|..+++....... .     
T Consensus         9 ~~~I~~~~~~g-~~~~~~~~~~~~~~~~~~~~gi~~d--------~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~-----   73 (267)
T 1npe_A            9 TGKIERLPLER-NTMKKTEAKAFLHIPAKVIIGLAFD--------CVDKVVYWTDISEPSIGRASLHGGEPTT-I-----   73 (267)
T ss_dssp             EEEEEEEEESS-SCBCGGGCEEEEEEEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEESSSCCCEE-E-----
T ss_pred             CCeEEEEEecC-cccccccceeeecCCCCcEEEEEEe--------cCCCEEEEEECCCCEEEEEecCCCCcEE-E-----
Confidence            35788888876 32110   01111122356789999        644 445555567889999986542210 0     


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG  160 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  160 (351)
                                                   ..........+++.|     ..+.+      +++-...+.|.++++..  .
T Consensus        74 -----------------------------~~~~~~~p~~ia~d~-----~~~~l------yv~d~~~~~I~~~~~~g--~  111 (267)
T 1npe_A           74 -----------------------------IRQDLGSPEGIALDH-----LGRTI------FWTDSQLDRIEVAKMDG--T  111 (267)
T ss_dssp             -----------------------------ECTTCCCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--C
T ss_pred             -----------------------------EECCCCCccEEEEEe-----cCCeE------EEEECCCCEEEEEEcCC--C
Confidence                                         011123567888983     23445      55656678899999874  2


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  237 (351)
                      . ...+..    ........++++|++..|+.+..   .+.|..+++.....   ..+  ..........++++|++..|
T Consensus       112 ~-~~~~~~----~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~--~~~~~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          112 Q-RRVLFD----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RIL--AQDNLGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             S-CEEEEC----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEE--ECTTCSCEEEEEEETTTTEE
T ss_pred             C-EEEEEE----CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEE--EECCCCCCcEEEEcCCCCEE
Confidence            2 122210    11235688999997666665554   36888888865321   111  11123457889999987666


Q ss_pred             E-EEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          238 L-SVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       238 ~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      + +-...+.|.++|+.....       ...+.   . ......++..   ++.++++....+.|.++|.. ++.+.++.
T Consensus       182 yv~d~~~~~I~~~~~~g~~~-------~~~~~---~-~~~P~gi~~d---~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPGR-------RKVLE---G-LQYPFAVTSY---GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEETTTTEEEEEETTEEEE-------EEEEE---C-CCSEEEEEEE---TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEECCCCEEEEEecCCCce-------EEEec---C-CCCceEEEEe---CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            4 445568999999865431       01111   1 1223456543   46677777778899999986 66666664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=7.4e-06  Score=65.80  Aligned_cols=196  Identities=7%  Similarity=0.036  Sum_probs=119.6

Q ss_pred             EEEEeeeecCCc--eeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCeE
Q 048511           20 VRACELKGHTDW--IRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVL   95 (351)
Q Consensus        20 ~~~~~~~~h~~~--V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (351)
                      +.+.++ .|...  ...|.|+        . +.++.+.+.+|  .|+++|+.+++........                 
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~--------~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----------------   84 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR--------N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----------------   84 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE--------T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------------
T ss_pred             EEEEEe-cCCCCcccceEEEE--------C-CEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------------
Confidence            445555 45543  4888888        3 56777777776  8999999998765443311                 


Q ss_pred             EecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511           96 VAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus        96 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                                      . ...-..+.+.       ..++      .+..-.++.+.+||..+  .+.+.++...   .  
T Consensus        85 ----------------~-~~FgeGit~~-------g~~l------y~ltw~~~~v~v~D~~t--~~~~~ti~~~---~--  127 (262)
T 3nol_A           85 ----------------K-RYFGEGISDW-------KDKI------VGLTWKNGLGFVWNIRN--LRQVRSFNYD---G--  127 (262)
T ss_dssp             ----------------T-TCCEEEEEEE-------TTEE------EEEESSSSEEEEEETTT--CCEEEEEECS---S--
T ss_pred             ----------------C-ccceeEEEEe-------CCEE------EEEEeeCCEEEEEECcc--CcEEEEEECC---C--
Confidence                            0 1111223433       1233      44445688999999998  7778777732   1  


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc----cc-ccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG----HF-AAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~----~~-~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                         ....+.++++.|+.+..++.|.++|..+.+     .+.++.-    .. ..++.+.|. +|++++..-.+..|.+.|
T Consensus       128 ---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-----v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          128 ---EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-----PVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             ---CCCCEEECSSCEEECCSSSEEEEECTTTCS-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             ---CceEEecCCCEEEEECCCCeEEEEcCCCCe-----EEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence               112333577778777778899999998863     2333322    11 345667877 676665555688999999


Q ss_pred             CCCccccccCccceEEecccc-------ccccceeEEEEeeeCCCcEEEEe
Q 048511          251 PWKNVASLMGENSWHEVARPQ-------VHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      .++++..     .+-.+..+.       ......+.+||+| ..+.++++|
T Consensus       199 p~tG~V~-----~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG  243 (262)
T 3nol_A          199 PETGKVT-----GIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG  243 (262)
T ss_dssp             TTTCBEE-----EEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred             CCCCcEE-----EEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence            9998732     122222111       1123479999999 334555666

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=5.4e-06  Score=77.28  Aligned_cols=153  Identities=10%  Similarity=0.072  Sum_probs=88.9

Q ss_pred             eEEEEeccCCCcceEEEEEeccccc----cccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccc------
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSH----SALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQ------  215 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~------  215 (351)
                      .|..+|.++  ++.+-.++......    ...+.....+..+++   .++.++.+|.++++|..+++.......      
T Consensus       271 ~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          271 SILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             EEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence            499999998  66655555321110    012233333334665   688899999999999988753100000      


Q ss_pred             ccccc-ccc------------------------cEEEEEeecCCCEEEEE------------------------------
Q 048511          216 KVPSG-HFA------------------------AVMDISWSRSSDYLLSV------------------------------  240 (351)
Q Consensus       216 ~~~~~-~~~------------------------~v~~v~~sp~~~~l~s~------------------------------  240 (351)
                      ..+.. ...                        .-..++++|+..+++..                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence            00000 000                        01125777776665531                              


Q ss_pred             ------eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          241 ------SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       241 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                            ..+|.|..||+.+++      ..|+.-.     ........+..  .+.+++.++.|+.+++||.. ++.+..+
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~------~~W~~~~-----~~~~~~~~~~t--~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQK------AAWKVPY-----PTHWNGGTLST--AGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTE------EEEEEEE-----SSSCCCCEEEE--TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCccceEEEEeCCCCc------EEEEccC-----CCCCcCceeEe--CCCEEEEECCcccchhhhhhcChhheEe
Confidence                  124789999998887      3454321     12233344455  57788889999999999987 8777766


Q ss_pred             eec
Q 048511          314 NHA  316 (351)
Q Consensus       314 ~~~  316 (351)
                      +..
T Consensus       496 ~~~  498 (668)
T 1kv9_A          496 EAQ  498 (668)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.65  E-value=3.6e-05  Score=61.24  Aligned_cols=198  Identities=9%  Similarity=0.027  Sum_probs=122.1

Q ss_pred             eEEEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeecccccceeeeEeeecCCe
Q 048511           19 FVRACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        19 ~~~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (351)
                      ++.+.++ .|..  -...+.|+        . +.++.+.+.+|  .|+.+|+.+++........                
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~--------~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------------   62 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYL--------R-GHLYESTGETGRSSVRKVDLETGRILQRAEVP----------------   62 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEE--------T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC----------------
T ss_pred             eEEEEEc-CCCCccccccEEEE--------C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC----------------
Confidence            4555666 4654  56799998        4 56667777654  8999999998766544321                


Q ss_pred             EEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccc
Q 048511           95 LVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus        95 l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                                       .+ ..-..+.+.       .+++      .+..-.++.+.+||..+  .+.+.++...   . 
T Consensus        63 -----------------~~-~fgeGi~~~-------~~~l------y~ltw~~~~v~v~D~~t--l~~~~ti~~~---~-  105 (243)
T 3mbr_X           63 -----------------PP-YFGAGIVAW-------RDRL------IQLTWRNHEGFVYDLAT--LTPRARFRYP---G-  105 (243)
T ss_dssp             -----------------TT-CCEEEEEEE-------TTEE------EEEESSSSEEEEEETTT--TEEEEEEECS---S-
T ss_pred             -----------------CC-cceeEEEEe-------CCEE------EEEEeeCCEEEEEECCc--CcEEEEEeCC---C-
Confidence                             11 011223333       2333      45555688999999998  8888877732   1 


Q ss_pred             ccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--cc---ccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          175 ALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HF---AAVMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~---~~v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                        .-+.++  +++..|+.+..++.|.++|..+.+     .+.++.-  +.   ..++.+.+. +|+.++..-.+..|.+.
T Consensus       106 --~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~-----~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          106 --EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ-----QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI  175 (243)
T ss_dssp             --CCCEEE--ECSSCEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             --CceEEe--eCCCEEEEECCCCeEEEEeCCCCe-----EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence              113444  567777777778999999998853     2333332  11   345667766 66655555467899999


Q ss_pred             cCCCccccccCccceEEecccc--------ccccceeEEEEeeeCCCcEEEEec
Q 048511          250 APWKNVASLMGENSWHEVARPQ--------VHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      |.++++..     .+-.+..+.        ......+.+|++| ..+.++++|-
T Consensus       176 Dp~tG~V~-----~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK  223 (243)
T 3mbr_X          176 DPASGKVV-----AWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK  223 (243)
T ss_dssp             CTTTCBEE-----EEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred             ECCCCCEE-----EEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence            99998832     222222111        1223479999998 3455666663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.65  E-value=7.1e-07  Score=75.52  Aligned_cols=248  Identities=10%  Similarity=-0.021  Sum_probs=130.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      |+.++.|..|| .+ ++.  ...+..+...+.++...        .++. |..++.+  |..+|. +++......... .
T Consensus        36 ~t~~~~l~~~d-~~-g~~--~~~~~~~~~~~~~~~~~--------~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~-~   98 (330)
T 3hxj_A           36 GSSNKNLYAIN-TD-GSV--KWFFKSGEIIECRPSIG--------KDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK-A   98 (330)
T ss_dssp             SSTTTTTEEEC-TT-SCE--EESSCGGGEEEECCEET--------TTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred             EcCCCEEEEEC-CC-CcE--EEEEecCCCcccceEEe--------cCCc-EEEecCc--EEEECC-CCcEEEEEECCC-C
Confidence            56678888999 66 643  33333334445666665        4554 4445544  888886 444433322111 1


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEe
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ  154 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  154 (351)
                      ........  +..+.++..++.+..+..-       ......+.++...      +++.       +..++.++.|..+|
T Consensus        99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~------~~g~-------l~vgt~~~~l~~~d  163 (330)
T 3hxj_A           99 IVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVS------EDGT-------IYVGSNDNYLYAIN  163 (330)
T ss_dssp             --CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEEC------TTSC-------EEEECTTSEEEEEC
T ss_pred             cccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEc------CCCE-------EEEEcCCCEEEEEC
Confidence            11112222  3344444433333322211       1112222333333      3443       66777889999999


Q ss_pred             ccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC
Q 048511          155 PEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS  234 (351)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~  234 (351)
                      ..   +.....+.     .....+.++...+++...+ ++  +.|..|| .+++     ...........+.++...+++
T Consensus       164 ~~---g~~~~~~~-----~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~-----~~~~~~~~~~~~~~~~~~~~g  226 (330)
T 3hxj_A          164 PD---GTEKWRFK-----TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT-----EKWNFYAGYWTVTRPAISEDG  226 (330)
T ss_dssp             TT---SCEEEEEE-----CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC-----EEEEECCSSCCCSCCEECTTS
T ss_pred             CC---CCEeEEEe-----cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc-----EEEEEccCCcceeceEECCCC
Confidence            87   23333333     1233456677777777554 44  7789998 4442     233333334567778888887


Q ss_pred             CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          235 DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       235 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                      .+ ..++.++.|..+|. ++.      ..|...    .....+..+.+.+   +..|..++.+|.|..+|..++.+..+
T Consensus       227 ~l-~v~t~~~gl~~~~~-~g~------~~~~~~----~~~~~~~~~~~~~---~g~l~v~t~~ggl~~~d~~g~~~~~~  290 (330)
T 3hxj_A          227 TI-YVTSLDGHLYAINP-DGT------EKWRFK----TGKRIESSPVIGN---TDTIYFGSYDGHLYAINPDGTEKWNF  290 (330)
T ss_dssp             CE-EEEETTTEEEEECT-TSC------EEEEEE----CSSCCCSCCEECT---TSCEEEECTTCEEEEECTTSCEEEEE
T ss_pred             eE-EEEcCCCeEEEECC-CCC------EeEEee----CCCCccccceEcC---CCeEEEecCCCCEEEECCCCcEEEEE
Confidence            64 44667788888874 333      122221    1222234455544   44566777888899999766655443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.64  E-value=3.7e-06  Score=72.91  Aligned_cols=163  Identities=8%  Similarity=0.034  Sum_probs=103.7

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI  190 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l  190 (351)
                      -..+...      +++ +      ++++..+      +.|.++|.++  .+.+.++....  .....-+.+.|+|+++.+
T Consensus       140 Ph~~~~~------pdG-i------~Vs~~g~~~g~~~g~v~vlD~~T--~~v~~~~~~~~--~~~~~~Yd~~~~p~~~~m  202 (462)
T 2ece_A          140 LHTVHCG------PDA-I------YISALGNEEGEGPGGILMLDHYS--FEPLGKWEIDR--GDQYLAYDFWWNLPNEVL  202 (462)
T ss_dssp             EEEEEEC------SSC-E------EEEEEEETTSCSCCEEEEECTTT--CCEEEECCSBC--TTCCCCCCEEEETTTTEE
T ss_pred             ccceeEC------CCe-E------EEEcCCCcCCCCCCeEEEEECCC--CeEEEEEccCC--CCccccceEEECCCCCEE
Confidence            4456667      677 6      6776666      7899999998  67766665321  112234568889999988


Q ss_pred             EEEe-------------------eCCeEEEEEcccCcccCcccccccccc--cccEEEEEe--ecCCCEEEEEe------
Q 048511          191 LAHG-------------------YGGAFHLWRNVGVDIDNWQPQKVPSGH--FAAVMDISW--SRSSDYLLSVS------  241 (351)
Q Consensus       191 ~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~~~~~~--~~~v~~v~~--sp~~~~l~s~~------  241 (351)
                      +++.                   .+.+|.+||+.+.     +.+.++...  ......+.|  +|+++++++++      
T Consensus       203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~  277 (462)
T 2ece_A          203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD  277 (462)
T ss_dssp             EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred             EEccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence            8885                   3689999999875     334444432  123455555  99999987766      


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccc-------------cccccceeEEEEeeeCCCcEEEEec-CCCeEEEEecC
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARP-------------QVHGHDINCVTIIQGKGNHRFVSGA-DEKVARVFEAP  306 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~  306 (351)
                      .+++|.+|....+....  ..... +...             .+-......+.+++  |+++|.++. ..+.|.+||+.
T Consensus       278 Lss~V~v~~~d~g~~~~--~~vId-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          278 LSSSIWLWFYEDGKWNA--EKVIE-IPAEPLEGNLPEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCEEEEEEEEETTEEEE--EEEEE-ECCEECCSSCCGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECS
T ss_pred             CCceEEEEEecCCceeE--EEEEe-CCCccccccccccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEec
Confidence            46688887765432110  00000 0110             00023478899999  777775544 68899999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.64  E-value=1.4e-05  Score=64.18  Aligned_cols=195  Identities=9%  Similarity=0.047  Sum_probs=122.3

Q ss_pred             EEEeeeecCC--ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           21 RACELKGHTD--WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        21 ~~~~~~~h~~--~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      .+.++ .|..  -...|.|+        . +.++.+.+.+|.|+++|+.+++..... ..                    
T Consensus        45 Vv~~~-phd~~~ftqGL~~~--------~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--------------------   93 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH--------Q-GHFFESTGHQGTLRQLSLESAQPVWME-RL--------------------   93 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE--------T-TEEEEEETTTTEEEECCSSCSSCSEEE-EC--------------------
T ss_pred             EEEEE-cCCCccccceEEEE--------C-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC--------------------
Confidence            34455 3543  34788888        3 667788888999999999998766433 11                    


Q ss_pred             CCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccce
Q 048511           99 SSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGF  178 (351)
Q Consensus        99 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i  178 (351)
                                   . ...-..+++.       ...+      .+..-.++.+.+||..+  .+.+.++...   ..   -
T Consensus        94 -------------~-~~FgeGit~~-------g~~L------y~ltw~~~~v~V~D~~T--l~~~~ti~~~---~e---G  138 (268)
T 3nok_A           94 -------------G-NIFAEGLASD-------GERL------YQLTWTEGLLFTWSGMP--PQRERTTRYS---GE---G  138 (268)
T ss_dssp             -------------T-TCCEEEEEEC-------SSCE------EEEESSSCEEEEEETTT--TEEEEEEECS---SC---C
T ss_pred             -------------C-CcceeEEEEe-------CCEE------EEEEccCCEEEEEECCc--CcEEEEEeCC---Cc---e
Confidence                         1 1111234443       2233      44555688999999999  8888887732   11   1


Q ss_pred             EEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc--cc---ccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          179 YGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG--HF---AAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       179 ~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~--~~---~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +.++  ++++.|+.+..++.|.++|..+.+     .+.++.-  +.   ..++.+.|. +|++++..-.+..|.+-|.++
T Consensus       139 wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-----v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          139 WGLC--YWNGKLVRSDGGTMLTFHEPDGFA-----LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             CCEE--EETTEEEEECSSSEEEEECTTTCC-----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred             eEEe--cCCCEEEEECCCCEEEEEcCCCCe-----EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            3333  567888888889999999998863     2333322  11   245677877 676555555678999999999


Q ss_pred             ccccccCccceEEeccc--------cccccceeEEEEeeeCCCcEEEEec
Q 048511          254 NVASLMGENSWHEVARP--------QVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      ++..     .+-.+..+        .....-.+.+|++| ..+.++++|-
T Consensus       211 G~V~-----~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp-~~~rlfVTGK  254 (268)
T 3nok_A          211 GTVV-----GVIDASALTRAVAGQVTNPEAVLNGIAVEP-GSGRIFMTGK  254 (268)
T ss_dssp             CBEE-----EEEECHHHHHHHTTTCCCTTCCEEEEEECT-TTCCEEEEET
T ss_pred             CcEE-----EEEECCCCcccccccccCcCCceEEEEEcC-CCCEEEEeCC
Confidence            8732     12222211        01123479999998 3466777773

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.60  E-value=1.6e-06  Score=73.30  Aligned_cols=209  Identities=12%  Similarity=0.034  Sum_probs=110.2

Q ss_pred             ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-------ccccccceEEEE
Q 048511           49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-------LIGHEDWVYSVQ  121 (351)
Q Consensus        49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~h~~~v~~l~  121 (351)
                      +.+.+ ++.++.|..+|.. ++......... ....++...+++.+++. ..++.+..+..       +......+.++.
T Consensus       108 ~~l~v-~t~~~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~~g~l~vg-t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          108 DILYV-TSMDGHLYAINTD-GTEKWRFKTKK-AIYATPIVSEDGTIYVG-SNDNYLYAINPDGTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TEEEE-ECTTSEEEEECTT-SCEEEEEECSS-CCCSCCEECTTSCEEEE-CTTSEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred             CEEEE-EecCCEEEEEcCC-CCEEEEEcCCC-ceeeeeEEcCCCEEEEE-cCCCEEEEECCCCCEeEEEecCCCceeeeE
Confidence            44443 4556777777777 55444333321 12233344445554333 22222222111       111122344444


Q ss_pred             ecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEE
Q 048511          122 WEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHL  201 (351)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~  201 (351)
                      +.      .++.       +..++  +.|..+| .+  +.......     .....+.++...+++. +.+++.++.|..
T Consensus       184 ~d------~~g~-------l~v~t--~~l~~~d-~~--g~~~~~~~-----~~~~~~~~~~~~~~g~-l~v~t~~~gl~~  239 (330)
T 3hxj_A          184 IG------KDGT-------IYFGS--DKVYAIN-PD--GTEKWNFY-----AGYWTVTRPAISEDGT-IYVTSLDGHLYA  239 (330)
T ss_dssp             EC------TTCC-------EEEES--SSEEEEC-TT--SCEEEEEC-----CSSCCCSCCEECTTSC-EEEEETTTEEEE
T ss_pred             Ec------CCCE-------EEEEe--CEEEEEC-CC--CcEEEEEc-----cCCcceeceEECCCCe-EEEEcCCCeEEE
Confidence            44      3444       44444  7799999 55  44443333     2234577788887765 556677888888


Q ss_pred             EEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEE
Q 048511          202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVT  281 (351)
Q Consensus       202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (351)
                      +|.....      +..+......+..+...+++. |..++.++.|..+|. +++      ..|.    .......+.++.
T Consensus       240 ~~~~g~~------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~------~~~~----~~~~~~~~~~~~  301 (330)
T 3hxj_A          240 INPDGTE------KWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGT------EKWN----FETGSWIIATPV  301 (330)
T ss_dssp             ECTTSCE------EEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSC------EEEE----EECSSCCCSCCE
T ss_pred             ECCCCCE------eEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCc------EEEE----EEcCCccccceE
Confidence            8753321      222222223334455555664 666778889999996 444      1222    222334466777


Q ss_pred             EeeeCCCcEEEEecCCCeEEEEecC
Q 048511          282 IIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       282 ~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..+  ++. |..++.+|.+++...+
T Consensus       302 ~d~--~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          302 IDE--NGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             ECT--TCC-EEEECTTSCEEEEEC-
T ss_pred             EcC--CCE-EEEEcCCCeEEEEecc
Confidence            765  554 6668899999988765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.56  E-value=3.4e-06  Score=75.66  Aligned_cols=248  Identities=10%  Similarity=0.048  Sum_probs=138.3

Q ss_pred             CCccEEEEeeC-CCcEEEEecCCCcccceeecccccceeeeEe-e-ecCCeEEecCC------------------ceeEE
Q 048511           47 AISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVISLAS-Y-IEGPVLVAGSS------------------SYQVS  105 (351)
Q Consensus        47 ~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~------------------~~~~~  105 (351)
                      ++|++|+.+.. +..|.+.|+.+.+....+..+.......+++ . |++.+++++++                  +..+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47888777654 5579999999988776555444455667776 4 88888877631                  11222


Q ss_pred             EEEecccc-------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCC------------------------------
Q 048511          106 VESLLIGH-------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK------------------------------  148 (351)
Q Consensus       106 ~~~~~~~h-------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~------------------------------  148 (351)
                      ++..-...       .+....++++      +++++      +++.+.+.                              
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~s------pdGk~------~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDAD------YEGKW------AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEEC------SSSSE------EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             EEECCCCeEEEEEEeCCCccceEEC------CCCCE------EEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence            22211000       0011235566      66776      66665432                              


Q ss_pred             --------eEEEEeccCCCcce-EEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcc------cC-
Q 048511          149 --------TMMIWQPEKTTGIW-MNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDI------DN-  211 (351)
Q Consensus       149 --------~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~~-  211 (351)
                              .|.+.|.++.++.. +..+..      .....++.++|||+++++++ .+.+|.++|+.+.+.      .. 
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIPI------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEEE------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEec------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                    35555555411111 223321      12345789999999887776 568999999986420      00 


Q ss_pred             cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-----ceeEEEEeeeC
Q 048511          212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-----DINCVTIIQGK  286 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~  286 (351)
                      ...+..+. -......++|+|+|...++.-.|++|.+||+........+......+.++..|-.     .-..+.++|  
T Consensus       321 ~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~--  397 (595)
T 1fwx_A          321 SAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA--  397 (595)
T ss_dssp             GGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC--
T ss_pred             cceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC--
Confidence            01122222 2345788999999944455566999999998762100000011223333333322     123334567  


Q ss_pred             CCcEEEEec---CCCeE----------EEEecCchhhhceee
Q 048511          287 GNHRFVSGA---DEKVA----------RVFEAPLSFLKTLNH  315 (351)
Q Consensus       287 ~~~~l~s~~---~dg~v----------~vw~~~~~~~~~~~~  315 (351)
                      ||++|++..   .|+.+          .++|+++..++.+..
T Consensus       398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d  439 (595)
T 1fwx_A          398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD  439 (595)
T ss_dssp             CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence            888888765   24431          778887655555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.50  E-value=4.8e-05  Score=64.15  Aligned_cols=229  Identities=9%  Similarity=0.012  Sum_probs=126.9

Q ss_pred             CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           30 DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        30 ~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      ....+++|.        +++++++++..++.|..|+..++.... ......  ... ....++..        .    ..
T Consensus        19 ~~p~~i~~d--------~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~--~~~-~~~~~g~~--------~----~~   74 (322)
T 2fp8_A           19 YAPNSFTFD--------STNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASP--YWN-KAFCENST--------D----AE   74 (322)
T ss_dssp             SCCCCEECC--------TTCSSEEEECTTSEEEEECCTTTCEEE-EEESCT--TCC-HHHHTTCC--------C----GG
T ss_pred             CCceEEEEc--------CCCCEEEEEcCCCeEEEECCCCCceEE-Eecccc--ccc-cccccccc--------c----hh
Confidence            345678888        778878888888999999876543211 100000  000 00000000        0    00


Q ss_pred             ccccccceEEEEecCCCCCCC-CCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC-CC
Q 048511          110 LIGHEDWVYSVQWEPPSTAPS-DGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP-DG  187 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~  187 (351)
                      .......+..+++.      + +++       |..+...+.|..+|...  +.. ..+..............+++.+ +|
T Consensus        75 ~~~~~~~p~gi~~~------~~~g~-------l~v~d~~~~i~~~d~~~--g~~-~~~~~~~~~~~~~~p~~i~~d~~~G  138 (322)
T 2fp8_A           75 KRPLCGRTYDISYN------LQNNQ-------LYIVDCYYHLSVVGSEG--GHA-TQLATSVDGVPFKWLYAVTVDQRTG  138 (322)
T ss_dssp             GHHHHCCEEEEEEE------TTTTE-------EEEEETTTEEEEECTTC--EEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred             ccccCCCCceEEEc------CCCCc-------EEEEECCCCEEEEeCCC--CEE-EEecccCCCCcccccceEEEecCCC
Confidence            00112347788888      4 555       44454455588888765  322 1221000001123467899999 88


Q ss_pred             CEEEEEee-----------------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEE
Q 048511          188 RSILAHGY-----------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVF  249 (351)
Q Consensus       188 ~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vw  249 (351)
                      +..++-..                 ++.|..||..+++.      ..+.........++++|++++|+.+ +.++.|.+|
T Consensus       139 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~  212 (322)
T 2fp8_A          139 IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKY  212 (322)
T ss_dssp             CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             EEEEECCcccccccccceehcccCCCceEEEEeCCCCEE------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEE
Confidence            76665432                 36788888766531      1111112345679999999866555 556899999


Q ss_pred             cCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC----------CCeEEEEecCchhhhceee
Q 048511          250 APWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD----------EKVARVFEAPLSFLKTLNH  315 (351)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~~  315 (351)
                      ++.....     .....+....   . ...+++.+  +|.+.++...          .+.|..++..++.+..+..
T Consensus       213 ~~~~~~~-----~~~~~~~~~~---g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~  277 (322)
T 2fp8_A          213 WLEGPKK-----GTAEVLVKIP---N-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL  277 (322)
T ss_dssp             ESSSTTT-----TCEEEEEECS---S-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC
T ss_pred             ECCCCcC-----CccceEEeCC---C-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC
Confidence            9875321     1122222221   2 67788888  7877776654          5678888888777666654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.47  E-value=0.00037  Score=66.47  Aligned_cols=262  Identities=9%  Similarity=0.010  Sum_probs=149.6

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec------
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS------   77 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~------   77 (351)
                      .++.|..|+..+ +++..... ..+...|.++...        .++.+.+ ++.++-|..||..+.........      
T Consensus       191 ~~~Gl~~~~~~~-~~~~~~~~-~~~~~~i~~i~~d--------~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  259 (795)
T 4a2l_A          191 STDGLYTYSITQ-KTFEKVIP-ILGTKQIQAILQQ--------SPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKS  259 (795)
T ss_dssp             SSSCEEEEETTT-CCEEECC-----CCCEEEEEEE--------ETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTS
T ss_pred             CCCCEEEEeCCC-CeEEEecC-CCCCCeeEEEEEc--------CCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccc
Confidence            344577788776 54433211 1234578888887        6665555 44443488888876543211111      


Q ss_pred             ccccceeeeEeeecCCeEEecCCceeEEEEE-------ecc--------ccccceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           78 TYRKEVISLASYIEGPVLVAGSSSYQVSVES-------LLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .....+.++....+|.+.+.... +-. .+.       .+.        -....|.++...      +++.       |.
T Consensus       260 l~~~~i~~i~~d~~g~lWigt~~-Gl~-~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D------~~g~-------lW  324 (795)
T 4a2l_A          260 ISSNYIRSLAMDSQNRLWIGTFN-DLN-IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD------SQGG-------MW  324 (795)
T ss_dssp             CSCSBEEEEEECTTSCEEEEESS-CEE-EEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC------TTSC-------EE
T ss_pred             cCCCeEEEEEEcCCCCEEEEeCC-hhh-eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe------CCcC-------EE
Confidence            11345677777777776665433 322 111       111        123568888887      5665       67


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc--
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP--  218 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--  218 (351)
                      .|+.++-|..|+...  .... .+....  ..-....|.++...+++. |..|+.++-|..||..++....+.....-  
T Consensus       325 igt~~~Gl~~~~~~~--~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~  400 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIR--NRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESA  400 (795)
T ss_dssp             EEESSSCEEEECGGG--GSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC-----
T ss_pred             EEECCCCeEEeCCCc--ccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcc
Confidence            777777899999876  3222 121100  011234689999988876 55677777799998876532111100000  


Q ss_pred             -ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc--ccccccceeEEEEeeeCCCcEEEEec
Q 048511          219 -SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR--PQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       219 -~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                       ......|.+++..++++.|..|+.++-|.+||..++..        ..+..  .......|.++...+  ++.+.+...
T Consensus       401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--------~~~~~~~~~l~~~~v~~i~~d~--~g~lwigt~  470 (795)
T 4a2l_A          401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--------ENFNQRNSQLVNENVYAILPDG--EGNLWLGTL  470 (795)
T ss_dssp             -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--------EEECTTTSCCSCSCEEEEEECS--SSCEEEEES
T ss_pred             cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--------EEeecCCCCcCCCeeEEEEECC--CCCEEEEec
Confidence             01235789999988888455677777899999877651        12211  112345688888776  666555543


Q ss_pred             CCCeEEEEecCc
Q 048511          296 DEKVARVFEAPL  307 (351)
Q Consensus       296 ~dg~v~vw~~~~  307 (351)
                       + -+.+|+...
T Consensus       471 -~-Gl~~~~~~~  480 (795)
T 4a2l_A          471 -S-ALVRFNPEQ  480 (795)
T ss_dssp             -S-CEEEEETTT
T ss_pred             -C-ceeEEeCCC
Confidence             4 467788653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.44  E-value=0.00036  Score=66.55  Aligned_cols=261  Identities=9%  Similarity=0.091  Sum_probs=146.3

Q ss_pred             ceEEEEEccCCCceEEEEeeeec-CCc-eeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            6 NKIHLYRGQRTGKFVRACELKGH-TDW-IRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h-~~~-V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      +.|.+|+..+ +++....  .++ ... |.++...        .++.+.+ ++.++-|..|+..+..............+
T Consensus       150 ~gl~~~~~~~-~~~~~~~--~~~~~~~~i~~i~~d--------~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i  217 (795)
T 4a2l_A          150 EGLIMFDIKE-SKFIDDS--FSTAMHKTIASTLYR--------QGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQI  217 (795)
T ss_dssp             TEEEEEETTT-TEEECSS--SCHHHHTCCEEEEEE--------ETTEEEE-EESSSCEEEEETTTCCEEECC----CCCE
T ss_pred             CceEEEECCC-CEEEecc--CCCCCCcceEEEEEC--------CCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCee
Confidence            3466777665 4332111  111 123 8888887        6665555 55554588888776543221111123356


Q ss_pred             eeeEeeecCCeEEecCCceeEEE------EEecc--------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSV------ESLLI--------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~------~~~~~--------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                      .++....++.+++.....+-...      ...+.        -....|.++...      +++.       |..|+.+ -
T Consensus       218 ~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d------~~g~-------lWigt~~-G  283 (795)
T 4a2l_A          218 QAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD------SQNR-------LWIGTFN-D  283 (795)
T ss_dssp             EEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC------TTSC-------EEEEESS-C
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc------CCCC-------EEEEeCC-h
Confidence            66666777776665433332211      11111        113568888887      5665       4555555 5


Q ss_pred             EEEEeccCCCcceEEEEEecc---ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc-cccccccE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGE---LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV-PSGHFAAV  225 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~v  225 (351)
                      |.+||...  +.... +....   ..-....|.++..+++|. |..|+.++-|..|+..+.....+..... -.-....|
T Consensus       284 l~~~~~~~--~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V  359 (795)
T 4a2l_A          284 LNIYHEGT--DSFAS-YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV  359 (795)
T ss_dssp             EEEEETTT--TEEEE-ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE
T ss_pred             hheEcCCC--CeEEE-EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCee
Confidence            88999876  43322 21110   111235699999998887 5567777779999876653211111000 01124569


Q ss_pred             EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc------cccccceeEEEEeeeCCCcEEEEecCCCe
Q 048511          226 MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP------QVHGHDINCVTIIQGKGNHRFVSGADEKV  299 (351)
Q Consensus       226 ~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~dg~  299 (351)
                      .++...++|.+. .|+.++-|..||..++.        +......      ......|.++...+  ++.+|..|+.++-
T Consensus       360 ~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~G  428 (795)
T 4a2l_A          360 SCIVEDKDKNLW-IGTNDGGLNLYNPITQR--------FTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGG  428 (795)
T ss_dssp             EEEEECTTSCEE-EEESSSCEEEECTTTCC--------EEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTE
T ss_pred             EEEEECCCCCEE-EEECCCCeEEEcCCCCc--------EEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCc
Confidence            999988888754 47777789999987654        1122111      11234588888877  6774566666667


Q ss_pred             EEEEecCc
Q 048511          300 ARVFEAPL  307 (351)
Q Consensus       300 v~vw~~~~  307 (351)
                      |.+|+...
T Consensus       429 l~~~d~~~  436 (795)
T 4a2l_A          429 LSILHRNS  436 (795)
T ss_dssp             EEEEETTT
T ss_pred             eeEEeCCC
Confidence            88888763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.44  E-value=3.5e-05  Score=62.53  Aligned_cols=182  Identities=8%  Similarity=-0.027  Sum_probs=112.4

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      +++|+++|+.+ ++......+..+. ..-.+++.        . +.+.++.-.++.+.++|..+.+.+..+..       
T Consensus        43 ~s~v~~iD~~t-g~v~~~i~l~~~~-fgeGi~~~--------g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~-------  104 (266)
T 2iwa_A           43 RSSVRQVALQT-GKVENIHKMDDSY-FGEGLTLL--------N-EKLYQVVWLKNIGFIYDRRTLSNIKNFTH-------  104 (266)
T ss_dssp             TCEEEEEETTT-CCEEEEEECCTTC-CEEEEEEE--------T-TEEEEEETTCSEEEEEETTTTEEEEEEEC-------
T ss_pred             CCEEEEEECCC-CCEEEEEecCCCc-ceEEEEEe--------C-CEEEEEEecCCEEEEEECCCCcEEEEEEC-------
Confidence            57899999998 7544333333321 22245555        2 23444455688999999987765433321       


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  164 (351)
                                                 + ...  ...++      +|+..      ++.+..++.|.++|..+  .+...
T Consensus       105 ---------------------------g-~~~--g~glt------~Dg~~------l~vs~gs~~l~viD~~t--~~v~~  140 (266)
T 2iwa_A          105 ---------------------------Q-MKD--GWGLA------TDGKI------LYGSDGTSILYEIDPHT--FKLIK  140 (266)
T ss_dssp             ---------------------------C-SSS--CCEEE------ECSSS------EEEECSSSEEEEECTTT--CCEEE
T ss_pred             ---------------------------C-CCC--eEEEE------ECCCE------EEEECCCCeEEEEECCC--CcEEE
Confidence                                       1 011  12234      45555      66666789999999998  77777


Q ss_pred             EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-------------cccEEEEEee
Q 048511          165 VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-------------FAAVMDISWS  231 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-------------~~~v~~v~~s  231 (351)
                      .+.+......-..+..+.|. ++...+....++.|.+.|..+++.     +..+...             ......|+|+
T Consensus       141 ~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-----~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~  214 (266)
T 2iwa_A          141 KHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-----LGWILLPNLRKKLIDEGFRDIDVLNGIAWD  214 (266)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-----EEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred             EEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-----EEEEECCCcccccccccccccCceEEEEEc
Confidence            77654322222246677887 665444444678999999998743     3333211             1356899999


Q ss_pred             cCCCEE-EEEeCCCcEEEEcCCCc
Q 048511          232 RSSDYL-LSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       232 p~~~~l-~s~~~dg~i~vwd~~~~  254 (351)
                      |+++.| +++...+.|.+.++...
T Consensus       215 ~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          215 QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCEEEEECCCCCeEEEEEEecc
Confidence            998765 55656788888887543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.43  E-value=0.00059  Score=58.16  Aligned_cols=162  Identities=7%  Similarity=-0.113  Sum_probs=99.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-e
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-Y  195 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~  195 (351)
                      ...+++.+     ..+++      +++-...+.|.+.++..  .. ...+.    ...-.....++++|.+..|+.+. .
T Consensus       118 p~glavd~-----~~g~l------y~~d~~~~~I~~~~~dG--~~-~~~l~----~~~l~~P~~iavdp~~g~ly~td~~  179 (349)
T 3v64_C          118 PGGLAVDW-----VHDKL------YWTDSGTSRIEVANLDG--AH-RKVLL----WQSLEKPRAIALHPMEGTIYWTDWG  179 (349)
T ss_dssp             CCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CS-CEEEE----CTTCSCEEEEEEETTTTEEEEEECS
T ss_pred             ccEEEEec-----CCCeE------EEEcCCCCeEEEEcCCC--Cc-eEEEE----eCCCCCcceEEEecCcCeEEEeccC
Confidence            45677773     34555      66666678899998875  22 22221    12223468899999766665554 3


Q ss_pred             C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511          196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      . +.|..+++.....     .......-.....|+++|++..|+.+ ...+.|..+|+.....        ..+..  ..
T Consensus       180 ~~~~I~r~~~dG~~~-----~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--------~~~~~--~~  244 (349)
T 3v64_C          180 NTPRIEASSMDGSGR-----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAVIS--QG  244 (349)
T ss_dssp             SSCEEEEEETTSCSC-----EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------EEEEC--SS
T ss_pred             CCCEEEEEeCCCCCc-----EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--------EEEEe--CC
Confidence            4 7888888876421     11112223457899999876665544 4567899999864331        11111  11


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN  314 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~  314 (351)
                      ......+++ .  ++.++++-...+.|..++ ..++.+..+.
T Consensus       245 ~~~P~giav-~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          245 LPHPFAITV-F--EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             CSSEEEEEE-E--TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCceEEEE-E--CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            223567777 4  477778888888999888 5576666554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.42  E-value=0.00013  Score=59.60  Aligned_cols=160  Identities=9%  Similarity=-0.085  Sum_probs=98.6

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-  194 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-  194 (351)
                      .+..++|.|     ..+.+      +++-...+.|..+++..  .... .+.    .........+++++++..|+.+. 
T Consensus        37 ~~~gi~~d~-----~~~~l------y~~d~~~~~I~~~~~~g--~~~~-~~~----~~~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           37 VIIGLAFDC-----VDKVV------YWTDISEPSIGRASLHG--GEPT-TII----RQDLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEET-----TTTEE------EEEETTTTEEEEEESSS--CCCE-EEE----CTTCCCEEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEec-----CCCEE------EEEECCCCEEEEEecCC--CCcE-EEE----ECCCCCccEEEEEecCCeEEEEEC
Confidence            467899994     23455      56666678999999875  3222 221    11223578899999766565554 


Q ss_pred             eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEecccc
Q 048511          195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ..+.|.++++.....     .............++++|++..|+.+..   .+.|..+++.....        ..+..  
T Consensus        99 ~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------~~~~~--  163 (267)
T 1npe_A           99 QLDRIEVAKMDGTQR-----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RILAQ--  163 (267)
T ss_dssp             TTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEEEC--
T ss_pred             CCCEEEEEEcCCCCE-----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--------EEEEE--
Confidence            568999999875421     1111112245689999996665554443   36888888754321        12211  


Q ss_pred             ccccceeEEEEeeeCCC-cEEEEecCCCeEEEEecCchhh
Q 048511          272 VHGHDINCVTIIQGKGN-HRFVSGADEKVARVFEAPLSFL  310 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~-~~l~s~~~dg~v~vw~~~~~~~  310 (351)
                      ........+++++  ++ .++++-...+.|.+++..+...
T Consensus       164 ~~~~~P~gia~d~--~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          164 DNLGLPNGLTFDA--FSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             TTCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             CCCCCCcEEEEcC--CCCEEEEEECCCCEEEEEecCCCce
Confidence            1123478899998  54 5556666788999999885433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.42  E-value=0.00032  Score=60.79  Aligned_cols=162  Identities=7%  Similarity=-0.096  Sum_probs=98.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-  195 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-  195 (351)
                      ...+++.+     ..+.+      +++-...+.|.+.++..  .. ...+.    ...-.....++++|.+..|+.+.. 
T Consensus       161 p~glavd~-----~~g~l------Y~~d~~~~~I~~~~~dg--~~-~~~l~----~~~l~~P~giavdp~~g~ly~td~~  222 (386)
T 3v65_B          161 PGGLAVDW-----VHDKL------YWTDSGTSRIEVANLDG--AH-RKVLL----WQSLEKPRAIALHPMEGTIYWTDWG  222 (386)
T ss_dssp             CCCEEEET-----TTTEE------EEEETTTTEEEECBTTS--CS-CEEEE----CSSCSCEEEEEEETTTTEEEEEECS
T ss_pred             ccEEEEEe-----CCCeE------EEEcCCCCeEEEEeCCC--Cc-eEEee----cCCCCCCcEEEEEcCCCeEEEeccC
Confidence            34566663     34555      66666677888888764  22 22221    122235688999997776665553 


Q ss_pred             C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511          196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      . +.|..+++.....     .......-.....|+++|++..|+.+ +..+.|..+|+.....        ..+..  ..
T Consensus       223 ~~~~I~r~~~dG~~~-----~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~--------~~~~~--~~  287 (386)
T 3v65_B          223 NTPRIEASSMDGSGR-----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------KAVIS--QG  287 (386)
T ss_dssp             SSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC--------EEEEC--SS
T ss_pred             CCCEEEEEeCCCCCc-----EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee--------EEEEE--CC
Confidence            3 6888888876421     11112223457899999866665544 4567899999864331        11111  11


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN  314 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~  314 (351)
                      ......+++ .  ++.++++-...+.|..++ ..+..+..+.
T Consensus       288 ~~~P~giav-~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          288 LPHPFAITV-F--EDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             CSSEEEEEE-E--TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCceEEEE-E--CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            223567777 3  477778888889999998 5576666654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.38  E-value=0.00017  Score=65.93  Aligned_cols=152  Identities=9%  Similarity=-0.066  Sum_probs=87.1

Q ss_pred             eEEEEeccCCCcceEEEEEeccc-----cccccceEEEEEcCCCC---EEEEEeeCCeEEEEEcccCcccCcccccc-c-
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGEL-----SHSALGFYGGHWSPDGR---SILAHGYGGAFHLWRNVGVDIDNWQPQKV-P-  218 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~~~~---~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~-  218 (351)
                      .|..+|.++  ++.+-.++....     .....++. +....+|+   .++.++.+|.++++|..+++......... . 
T Consensus       273 ~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          273 TIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             EEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             EEEEEecCC--CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence            589999998  666555553211     01112222 22234674   56778889999999998875311000000 0 


Q ss_pred             -----c-cccccE--------------------------EEEEeecCCCEEEEEe-------------------------
Q 048511          219 -----S-GHFAAV--------------------------MDISWSRSSDYLLSVS-------------------------  241 (351)
Q Consensus       219 -----~-~~~~~v--------------------------~~v~~sp~~~~l~s~~-------------------------  241 (351)
                           . ....++                          ..++++|+..+|+..+                         
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                 0 000011                          2457788777766543                         


Q ss_pred             ------------CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-ch
Q 048511          242 ------------HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LS  308 (351)
Q Consensus       242 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~  308 (351)
                                  .++.|..||..+++      ..|+.-..     ..+....+..  .+.+++.++.|+.|+.||.. ++
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~------~~W~~~~~-----~~~~~~~~~t--~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGK------AKWTKWEK-----FAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCC------EEEEEEES-----SCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeccCccccCCCCCCeEEEEECCCCC------EEEEecCC-----CCccceeEEE--CCCEEEEEcCCCeEEEEECCCCC
Confidence                        35789999998886      24443211     1222333333  45677778999999999976 87


Q ss_pred             hhhceeec
Q 048511          309 FLKTLNHA  316 (351)
Q Consensus       309 ~~~~~~~~  316 (351)
                      .+.+++..
T Consensus       497 ~lw~~~~~  504 (571)
T 2ad6_A          497 ELWNFKMP  504 (571)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEeCC
Confidence            77766543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.33  E-value=5.5e-05  Score=60.74  Aligned_cols=170  Identities=11%  Similarity=0.095  Sum_probs=107.5

Q ss_pred             EEEEecccccc--ceEEEEecCCCCCCCCCcccCCCceeEEeecCC--eEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511          105 SVESLLIGHED--WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       105 ~~~~~~~~h~~--~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  180 (351)
                      ++.+.+. |..  ....|.|+       ++.+      +.+.+.+|  .|+++|+++  ++.+..+.+..    ...--.
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-------~~~L------yestG~~g~S~v~~vD~~T--gkv~~~~~l~~----~~FgeG   91 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-------NGYF------YESTGLNGRSSIRKVDIES--GKTLQQIELGK----RYFGEG   91 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-------TTEE------EEEEEETTEEEEEEECTTT--CCEEEEEECCT----TCCEEE
T ss_pred             EEEEEec-CCCCcccceEEEE-------CCEE------EEECCCCCCceEEEEECCC--CcEEEEEecCC----ccceeE
Confidence            4444443 433  34788887       3566      77777776  899999999  87777776321    111123


Q ss_pred             EEEcCCCCEEEEEe-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc
Q 048511          181 GHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       181 i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      +++  ++..|+... .++.+.+||..+.     +.+.++....   ....++++++.|+.+..++.|.++|..+.+.   
T Consensus        92 it~--~g~~ly~ltw~~~~v~v~D~~t~-----~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v---  158 (262)
T 3nol_A           92 ISD--WKDKIVGLTWKNGLGFVWNIRNL-----RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP---  158 (262)
T ss_dssp             EEE--ETTEEEEEESSSSEEEEEETTTC-----CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSE---
T ss_pred             EEE--eCCEEEEEEeeCCEEEEEECccC-----cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeE---
Confidence            444  345555444 6899999999886     4455554322   2234446777777766678899999988762   


Q ss_pred             CccceEEecccccccc---ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          260 GENSWHEVARPQVHGH---DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                          ...+... ..+.   .++.+.|.   ++.+++..-.+..|.+.|.. ++.+..+.-
T Consensus       159 ----~~~I~V~-~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          159 ----VRTITVT-AHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             ----EEEEECE-ETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ----EEEEEec-cCCccccccceeEEE---CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence                1122111 1122   24557775   47777777788899999986 777776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.32  E-value=0.0011  Score=63.08  Aligned_cols=244  Identities=8%  Similarity=-0.029  Sum_probs=136.9

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee--------ecccccceeeeEeeecCCeEEecCC
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT--------QSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      ...|.++...        .++. |..|+.++-|..++..........        .......+.++....+|.+.+....
T Consensus       312 ~~~v~~i~~D--------~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~  382 (781)
T 3v9f_A          312 NASARYIFQD--------SFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG  382 (781)
T ss_dssp             SSCEEEEEEC--------SSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS
T ss_pred             CCeEEEEEEe--------CCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC
Confidence            3578888887        6564 555666667888887654322111        0111334667777777776655423


Q ss_pred             ceeEEE------EEec----cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc
Q 048511          101 SYQVSV------ESLL----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE  170 (351)
Q Consensus       101 ~~~~~~------~~~~----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  170 (351)
                      .+-...      ...+    ......|.++...      +++.       |..|+.++-+..+|.++  +... .+... 
T Consensus       383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d------~~g~-------lWigt~~~Gl~~~~~~~--~~~~-~~~~~-  445 (781)
T 3v9f_A          383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKD------SEGN-------LWFGTYLGNISYYNTRL--KKFQ-IIELE-  445 (781)
T ss_dssp             SCEEEEETTEEEEECC-----CCCSBEEEEEEC------TTSC-------EEEEETTEEEEEECSSS--CEEE-ECCST-
T ss_pred             CcEEEEECCCCeEEEccCCCCCCCcceEEEEEC------CCCC-------EEEEeccCCEEEEcCCC--CcEE-EeccC-
Confidence            222111      1111    1123568888877      5555       55677767788998876  4322 12110 


Q ss_pred             ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       171 ~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                       ......|.++...+++. |..++. +-|..||..+++...+............|.++...++|.+.+ |+.++-+..||
T Consensus       446 -~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~  521 (781)
T 3v9f_A          446 -KNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYT  521 (781)
T ss_dssp             -TTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEEC
T ss_pred             -CCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEe
Confidence             12345789999888776 444555 568899987754211110000001135789999998887655 44444577888


Q ss_pred             CCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          251 PWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                      ..+..        +....... .....|.++...+  ++.+.++.. +|.|..||.....+..+
T Consensus       522 ~~~~~--------~~~~~~~~~l~~~~i~~i~~d~--~g~lWi~T~-~Glv~~~d~~~~~~~~~  574 (781)
T 3v9f_A          522 PDMQL--------VRKFNQYEGFCSNTINQIYRSS--KGQMWLATG-EGLVCFPSARNFDYQVF  574 (781)
T ss_dssp             TTCCE--------EEEECTTTTCSCSCEEEEEECT--TSCEEEEET-TEEEEESCTTTCCCEEE
T ss_pred             CCCCe--------EEEccCCCCCCCCeeEEEEECC--CCCEEEEEC-CCceEEECCCCCcEEEc
Confidence            76554        12222111 2234588888776  666555544 77768888764433333

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.30  E-value=0.0002  Score=56.94  Aligned_cols=173  Identities=10%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVIS   85 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   85 (351)
                      .+|+++|+++ ++......+..+. ---.+++.         ++++....-.++.+.++|..+.+.+..+..        
T Consensus        43 S~v~~vD~~t-gkv~~~~~l~~~~-fgeGi~~~---------~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~--------  103 (243)
T 3mbr_X           43 SSVRKVDLET-GRILQRAEVPPPY-FGAGIVAW---------RDRLIQLTWRNHEGFVYDLATLTPRARFRY--------  103 (243)
T ss_dssp             CEEEEEETTT-CCEEEEEECCTTC-CEEEEEEE---------TTEEEEEESSSSEEEEEETTTTEEEEEEEC--------
T ss_pred             ceEEEEECCC-CCEEEEEeCCCCc-ceeEEEEe---------CCEEEEEEeeCCEEEEEECCcCcEEEEEeC--------
Confidence            5899999999 7654433333221 11234444         234444455788999999988766544331        


Q ss_pred             eEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEE
Q 048511           86 LASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNV  165 (351)
Q Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  165 (351)
                                               .+ .+  ..++        .++..      |..+..++.|.++|..+  .+.+..
T Consensus       104 -------------------------~~-~G--wglt--------~dg~~------L~vSdgs~~l~~iDp~t--~~~~~~  139 (243)
T 3mbr_X          104 -------------------------PG-EG--WALT--------SDDSH------LYMSDGTAVIRKLDPDT--LQQVGS  139 (243)
T ss_dssp             -------------------------SS-CC--CEEE--------ECSSC------EEEECSSSEEEEECTTT--CCEEEE
T ss_pred             -------------------------CC-Cc--eEEe--------eCCCE------EEEECCCCeEEEEeCCC--CeEEEE
Confidence                                     11 11  2343        23444      55556688999999998  777777


Q ss_pred             EEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--------cccccEEEEEeecCCCEE
Q 048511          166 VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--------GHFAAVMDISWSRSSDYL  237 (351)
Q Consensus       166 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------~~~~~v~~v~~sp~~~~l  237 (351)
                      +.+......-..+..+.+. +|+..+....+..|.+.|..+++....-.+..+.        ......+.|+++|+++.|
T Consensus       140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            7754322222345566665 5665555546789999999887532111111111        122467899999988777


Q ss_pred             EEEeC
Q 048511          238 LSVSH  242 (351)
Q Consensus       238 ~s~~~  242 (351)
                      +..+.
T Consensus       219 fVTGK  223 (243)
T 3mbr_X          219 FVTGK  223 (243)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            66654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.29  E-value=0.00029  Score=56.81  Aligned_cols=184  Identities=10%  Similarity=0.079  Sum_probs=117.3

Q ss_pred             EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCC
Q 048511          108 SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDG  187 (351)
Q Consensus       108 ~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  187 (351)
                      +.+.+-.+.+..++|.|     ..+.+      +++...++.|...|+.   +..+..+.+.    .....-.+++.+++
T Consensus        20 ~~l~g~~~~lSGla~~~-----~~~~L------~aV~d~~~~I~~ld~~---g~v~~~i~l~----g~~D~EGIa~~~~g   81 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSA-----QSNTL------FSTINKPAAIVEMTTN---GDLIRTIPLD----FVKDLETIEYIGDN   81 (255)
T ss_dssp             EECTTCCSCEEEEEEET-----TTTEE------EEEEETTEEEEEEETT---CCEEEEEECS----SCSSEEEEEECSTT
T ss_pred             eECCCcccCcceeEEeC-----CCCEE------EEEECCCCeEEEEeCC---CCEEEEEecC----CCCChHHeEEeCCC
Confidence            45677777899999995     33445      6667778888888876   5566666532    12457788999888


Q ss_pred             CEEEEEeeCCeEEEEEcccCcc-cCccccc-cc--ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccc
Q 048511          188 RSILAHGYGGAFHLWRNVGVDI-DNWQPQK-VP--SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENS  263 (351)
Q Consensus       188 ~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~-~~--~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  263 (351)
                      .++++.-.++.+.++++..... ....... .+  .........|+|+|.++.|.++.+.....||.+.....    ...
T Consensus        82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~----~~~  157 (255)
T 3qqz_A           82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS----SNE  157 (255)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC----SSC
T ss_pred             EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc----CCc
Confidence            8777766778999998865421 0000000 11  12344578999999998877777665555665541100    001


Q ss_pred             eEEecc----ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          264 WHEVAR----PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       264 ~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                      ......    -..+-..+..++++| ..+.+++.......+.++|..++.+..+.
T Consensus       158 l~i~~~~~~~~~~~~~d~S~l~~dp-~tg~lliLS~~s~~L~~~d~~g~~~~~~~  211 (255)
T 3qqz_A          158 LHISKDKALQRQFTLDDVSGAEFNQ-QKNTLLVLSHESRALQEVTLVGEVIGEMS  211 (255)
T ss_dssp             CEEEECHHHHHTCCSSCCCEEEEET-TTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred             eeeecchhhccccccCCceeEEEcC-CCCeEEEEECCCCeEEEEcCCCCEEEEEE
Confidence            111110    012234589999999 46778888889999999999988655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.27  E-value=2.8e-05  Score=62.47  Aligned_cols=174  Identities=9%  Similarity=-0.009  Sum_probs=104.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeE--EEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRS--LDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY   79 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~--l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~   79 (351)
                      .+.+|.|+++|+++ ++..... +..   ....  +++.        . +++.+..-.++.+.++|..+.+.+..+..  
T Consensus        71 tG~~g~v~~iD~~T-gkv~~~~-l~~---~~FgeGit~~--------g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~--  134 (268)
T 3nok_A           71 TGHQGTLRQLSLES-AQPVWME-RLG---NIFAEGLASD--------G-ERLYQLTWTEGLLFTWSGMPPQRERTTRY--  134 (268)
T ss_dssp             ETTTTEEEECCSSC-SSCSEEE-ECT---TCCEEEEEEC--------S-SCEEEEESSSCEEEEEETTTTEEEEEEEC--
T ss_pred             cCCCCEEEEEECCC-CcEEeEE-CCC---CcceeEEEEe--------C-CEEEEEEccCCEEEEEECCcCcEEEEEeC--
Confidence            35677899999998 7543333 332   3333  5554        2 33444455788999999998766544331  


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT  159 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  159 (351)
                                                     .++   -+.+++        ++..      |+.+..++.|.++|.++  
T Consensus       135 -------------------------------~~e---GwGLt~--------Dg~~------L~vSdGs~~l~~iDp~T--  164 (268)
T 3nok_A          135 -------------------------------SGE---GWGLCY--------WNGK------LVRSDGGTMLTFHEPDG--  164 (268)
T ss_dssp             -------------------------------SSC---CCCEEE--------ETTE------EEEECSSSEEEEECTTT--
T ss_pred             -------------------------------CCc---eeEEec--------CCCE------EEEECCCCEEEEEcCCC--
Confidence                                           111   123332        3444      55556688999999998  


Q ss_pred             cceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc--------ccccccEEEEEee
Q 048511          160 GIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP--------SGHFAAVMDISWS  231 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--------~~~~~~v~~v~~s  231 (351)
                      .+.+..+.+......-..+..+.|. +|+..+....+..|.+.|..+++....-.+..+        .......+.|+++
T Consensus       165 ~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d  243 (268)
T 3nok_A          165 FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVE  243 (268)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred             CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEc
Confidence            7777777754432233345667776 666555444678999999988753211111101        1122467899999


Q ss_pred             cCCCEEEEEeC
Q 048511          232 RSSDYLLSVSH  242 (351)
Q Consensus       232 p~~~~l~s~~~  242 (351)
                      |+++.|+..+.
T Consensus       244 p~~~rlfVTGK  254 (268)
T 3nok_A          244 PGSGRIFMTGK  254 (268)
T ss_dssp             TTTCCEEEEET
T ss_pred             CCCCEEEEeCC
Confidence            98766655543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.26  E-value=0.0018  Score=56.34  Aligned_cols=232  Identities=9%  Similarity=-0.035  Sum_probs=132.2

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      ..|+..+++. ..+..+   ......+..|+|.        +.+ .++++-...+.|..+++..........        
T Consensus        92 ~~I~~i~l~~-~~~~~~---~~~~~~~~~l~~d--------~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~--------  151 (400)
T 3p5b_L           92 HEVRKMTLDR-SEYTSL---IPNLRNVVALDTE--------VASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------  151 (400)
T ss_dssp             TEEEEECTTS-CSCEEE---ECSCSCEEEEEEE--------TTTTEEEEEETTTTEEEEEEC------CCCE--------
T ss_pred             ceeEEEccCC-cceeEe---ccccCcceEEeee--------eccCceEEEecCCCeEEEEEcccCCCCCcce--------
Confidence            4566666665 333222   2234567889998        544 444444556778878776422100000        


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  164 (351)
                                             ..+.........+++.+     ..+++      +++-...+.|.+.++..  .....
T Consensus       152 -----------------------~~~~~~~~~p~glavD~-----~~~~l------Y~~d~~~~~I~~~~~~g--~~~~~  195 (400)
T 3p5b_L          152 -----------------------TVISRDIQAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VKRKT  195 (400)
T ss_dssp             -----------------------EEECSSCSCEEEEEEET-----TTTEE------EEEETTTTEEEEECTTT--CSEEE
T ss_pred             -----------------------EEEeCCCCCcccEEEEe-----cCCce------EEEECCCCeEEEEeCCC--CceEE
Confidence                                   01111233567788873     24555      66666778899998875  32222


Q ss_pred             EEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-e
Q 048511          165 VVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-S  241 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~  241 (351)
                      .+.     ..-.....++++|.+..|+.+..  .+.|...++.....     .......-.....|++++++..|+.+ +
T Consensus       196 l~~-----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~l~~P~glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          196 LFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDS  265 (400)
T ss_dssp             EEE-----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEe-----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECCCCceEEEEEEeCCCEEEEEEC
Confidence            221     22234688999997776666553  37888888876421     11112223467899999877766655 4


Q ss_pred             CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe-cCchhhhcee
Q 048511          242 HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE-APLSFLKTLN  314 (351)
Q Consensus       242 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~-~~~~~~~~~~  314 (351)
                      ....|..+|+.....        ..+............+++.   ++.++++-...+.|..++ ..++.+..+.
T Consensus       266 ~~~~I~~~d~dG~~~--------~~~~~~~~~l~~P~gl~v~---~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          266 KLHSISSIDVNGGNR--------KTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TTTEEEEEETTSCCC--------EEEEECSSTTSSEEEEEEE---TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CCCEEEEEeCCCCcc--------EEEEeCCCCCCCCEEEEEe---CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            567899999865431        1221111111224567763   466777777888899888 4566665554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.26  E-value=0.0014  Score=54.98  Aligned_cols=232  Identities=9%  Similarity=-0.032  Sum_probs=133.9

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCc-cEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAIS-ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ...|+..++.. .++..+  +. ....+.+++|.        +.+ .++++-...+.|..+++.....-....       
T Consensus         9 ~~~I~~i~~~~-~~~~~~--~~-~~~~p~g~~~d--------~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~-------   69 (316)
T 1ijq_A            9 RHEVRKMTLDR-SEYTSL--IP-NLRNVVALDTE--------VASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------   69 (316)
T ss_dssp             BSSEEEEETTS-CCCEEE--EC-SCSSEEEEEEE--------TTTTEEEEEETTTTEEEEEEC--------CE-------
T ss_pred             CCeEEEEECCC-cceEeh--hc-CCCceEEEEEE--------eCCCEEEEEECCCCcEEEEECCCCCCCcccE-------
Confidence            45688888887 543332  22 34567899999        544 455555566888888876521000000       


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                              ..+...-.....+++.+     ..+++      +++-...+.|.+.++..  .. .
T Consensus        70 ------------------------~~~~~~~~~p~glavd~-----~~~~l------y~~d~~~~~I~~~~~~g--~~-~  111 (316)
T 1ijq_A           70 ------------------------TVISRDIQAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-R  111 (316)
T ss_dssp             ------------------------EEECSSCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--SS-E
T ss_pred             ------------------------EEEeCCCCCcCEEEEee-----cCCeE------EEEECCCCEEEEEeCCC--Cc-e
Confidence                                    00111112346777773     24455      56666778899999874  22 2


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEeeC--CeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEE
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGYG--GAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ..+..    ..-.....++++|.+..|+.+...  +.|..+++....      ...+ ...-.....++++|++..|+.+
T Consensus       112 ~~~~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          112 KTLFR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             EEEEE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEECCCCCceEEEEeccCCEEEEE
Confidence            22211    122356889999977766655543  688888886542      1111 1223467899999877666544


Q ss_pred             -eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511          241 -SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN  314 (351)
Q Consensus       241 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~  314 (351)
                       +..+.|..+|+.....        +.+............+++.   ++.++++-...+.|..++. .++.+..+.
T Consensus       182 D~~~~~I~~~d~dg~~~--------~~~~~~~~~~~~P~giav~---~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNR--------KTILEDEKRLAHPFSLAVF---EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             ETTTTEEEEEETTSCSC--------EEEEECTTTTSSEEEEEEE---TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ECCCCeEEEEecCCCce--------EEEeecCCccCCcEEEEEE---CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence             4567899999864331        1221111111235677774   4677778788889999986 466555554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.25  E-value=0.0012  Score=55.33  Aligned_cols=229  Identities=7%  Similarity=-0.064  Sum_probs=133.2

Q ss_pred             CceEEEEEccCCC-ceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccc
Q 048511            5 DNKIHLYRGQRTG-KFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKE   82 (351)
Q Consensus         5 dg~i~vw~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~   82 (351)
                      ...|+..+++... ....  .+.+ ...+.+|+|.        +. +.++.+-...+.|..+++..........      
T Consensus        12 ~~~I~~i~l~~~~~~~~~--~~~~-~~~~~~ld~d--------~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~------   74 (318)
T 3sov_A           12 RRDLRLVDATNGKENATI--VVGG-LEDAAAVDFV--------FSHGLIYWSDVSEEAIKRTEFNKTESVQNVV------   74 (318)
T ss_dssp             EEEEEEEETTCTTSCCEE--EEEE-EEEEEEEEEE--------GGGTEEEEEETTTTEEEEEETTSSSCCCEEE------
T ss_pred             cCeEEEEECCCCceEEEE--EecC-CCccEEEEEE--------eCCCEEEEEECCCCcEEEEEccCCCceEEEE------
Confidence            4578888887621 1211  1111 2356689998        53 4555555567788888877542211000      


Q ss_pred             eeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcce
Q 048511           83 VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIW  162 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  162 (351)
                                                  ...-.....+++.+     ..+++      +++-...+.|.++++..  . .
T Consensus        75 ----------------------------~~~l~~p~glavd~-----~~g~l------y~~d~~~~~I~~~~~dG--~-~  112 (318)
T 3sov_A           75 ----------------------------VSGLLSPDGLACDW-----LGEKL------YWTDSETNRIEVSNLDG--S-L  112 (318)
T ss_dssp             ----------------------------EECCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--C-S
T ss_pred             ----------------------------cCCCCCccEEEEEc-----CCCeE------EEEECCCCEEEEEECCC--C-c
Confidence                                        00112345677773     34555      66666678899999874  2 2


Q ss_pred             EEEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          163 MNVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      ...+.    .........++++|.+..|+.+..  .+.|..+++.....     .......-.....|+++|++..|+.+
T Consensus       113 ~~~l~----~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          113 RKVLF----WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             CEEEE----CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEE----eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----EEEEECCCCCccEEEEeccCCEEEEE
Confidence            22221    122335688999997666666653  57888888875421     11111223456899999976665544


Q ss_pred             -eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511          241 -SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN  314 (351)
Q Consensus       241 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~  314 (351)
                       +..+.|..+|+.....        +.+..  ........+++..   +.++.+-...+.|..++. .++..+.+.
T Consensus       184 D~~~~~I~~~d~dG~~~--------~~~~~--~~~~~P~glav~~---~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNR--------QAVVK--GSLPHPFALTLFE---DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             ETTTTEEEEEETTSCSC--------EEEEC--SCCSCEEEEEEET---TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCCCEEEEEcCCCCce--------EEEec--CCCCCceEEEEeC---CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence             4578899999864331        12211  1123356777754   567777778889999997 466555544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.24  E-value=8e-05  Score=69.39  Aligned_cols=230  Identities=12%  Similarity=0.091  Sum_probs=120.5

Q ss_pred             CccEEEEeeCCC-----------cEEEEecCCCcccceeeccc--ccceeeeEeeecCCeEEecCCc-eeEEEEEe----
Q 048511           48 ISILLVSSSQDK-----------VIRIWKLALRGSSANTQSTY--RKEVISLASYIEGPVLVAGSSS-YQVSVESL----  109 (351)
Q Consensus        48 ~~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~----  109 (351)
                      ++++++.|+.+.           .+.+||..+...........  .......++..++++++.|+.. ..+.++..    
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            788888887643           58899998876543322211  1122235667889999988743 23333321    


Q ss_pred             ---ccc-ccc-ceEEEEecCCCCCCCCCcccCCCceeEEee-cC-----CeEEEEeccCCCcceEEEEEe--cccccccc
Q 048511          110 ---LIG-HED-WVYSVQWEPPSTAPSDGVSCQQPSSILSAS-MD-----KTMMIWQPEKTTGIWMNVVTV--GELSHSAL  176 (351)
Q Consensus       110 ---~~~-h~~-~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~  176 (351)
                         +.. +.. .-.++.+.      +++++      ++.|+ .+     ..+.+||..+  ..+...-..  ..+.....
T Consensus       277 W~~~~~~~~~R~~~s~~~~------~dg~i------yv~GG~~~~~~~~~~~e~yd~~t--~~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATM------SDGRV------FTIGGSWSGGVFEKNGEVYSPSS--KTWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             EEECCCCSSCCSSCEEEEC------TTSCE------EEECCCCCSSSCCCCEEEEETTT--TEEEEETTSCSGGGCCCCT
T ss_pred             eeECCCCCccccccceEEe------cCCeE------EEEeCcccCCcccccceEeCCCC--CcceeCCCccccccccccc
Confidence               110 111 11233444      47777      88888 34     5699999987  555432100  00000000


Q ss_pred             ceEEEEEcCCCCEEEEEeeC---------CeEEEEEcccCcccCccccccccc------ccccEEEEEeec-CCCEEEEE
Q 048511          177 GFYGGHWSPDGRSILAHGYG---------GAFHLWRNVGVDIDNWQPQKVPSG------HFAAVMDISWSR-SSDYLLSV  240 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp-~~~~l~s~  240 (351)
                         ...+..++..++.++.+         ..+..||..+..-  +........      ....-.++.|.. ++++++.|
T Consensus       343 ---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          343 ---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             ---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             ---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence               01223445555555444         3567888766431  011100000      011223444543 67788888


Q ss_pred             eCCC-----------cEEEEcCCCccccccCccceEEec--cccccccceeEEEEeeeCCCcEEEEecCC----------
Q 048511          241 SHDQ-----------TTRVFAPWKNVASLMGENSWHEVA--RPQVHGHDINCVTIIQGKGNHRFVSGADE----------  297 (351)
Q Consensus       241 ~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----------  297 (351)
                      +.++           .|.+||..+..        |..+.  .+. ....-.+++..+  ++.+++.|+.+          
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~--------W~~~~~~~mp-~~R~~~~~~~l~--~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSP--------NTVFASNGLY-FARTFHTSVVLP--DGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCC--------EEEECTTCCS-SCCBSCEEEECT--TSCEEEECCBSBCCTTCCCSB
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCC--------eeEEccCCCC-CCcccCCeEECC--CCCEEEECCcccCcCcCCCCc
Confidence            7542           67788876553        55543  221 112223445666  78999999854          


Q ss_pred             -CeEEEEecCc
Q 048511          298 -KVARVFEAPL  307 (351)
Q Consensus       298 -g~v~vw~~~~  307 (351)
                       ..+.+||...
T Consensus       487 ~~~v~~ydp~t  497 (656)
T 1k3i_A          487 VFTPEIYVPEQ  497 (656)
T ss_dssp             CCCCEEEEGGG
T ss_pred             ccceEEEcCCC
Confidence             4688999764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=0.00049  Score=62.81  Aligned_cols=107  Identities=8%  Similarity=0.023  Sum_probs=66.9

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEecc-cc-------ccccce--------------------------EEEEEcCC
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LS-------HSALGF--------------------------YGGHWSPD  186 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~-------~~~~~i--------------------------~~i~~~~~  186 (351)
                      ++.++.+|.+.++|.++  ++.+-...+.. ..       ....++                          ..++++|+
T Consensus       319 v~~~~~~G~l~~lD~~t--G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          319 LSHIDRNGILYTLNREN--GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEECTTSEEEEEETTT--CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEeCCCcEEEEEECCC--CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            67788899999999998  66655554321 00       000011                          24678888


Q ss_pred             CCEEEEEee-------------------------------------CCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          187 GRSILAHGY-------------------------------------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       187 ~~~l~~~~~-------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      ...+++...                                     ++.|..||+.+++.     +-++. +...+.+..
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~-----~W~~~-~~~~~~~~~  470 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA-----KWTKW-EKFAAWGGT  470 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE-----EEEEE-ESSCCCSBC
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE-----EEEec-CCCCcccee
Confidence            777776543                                     46888888887742     22222 112222223


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +...+..++.++.|+.|+.||.++++
T Consensus       471 ~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          471 LYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             EEECCCEEEEEcCCCeEEEEECCCCC
Confidence            33345677778999999999999987

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.23  E-value=0.00035  Score=65.15  Aligned_cols=54  Identities=11%  Similarity=0.049  Sum_probs=37.3

Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +|.|..||+.+++.     +-+... ........+...+.+++.++.|+.++.||.++++
T Consensus       437 ~g~l~A~D~~tG~~-----~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKA-----AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEE-----EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcE-----EEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            37899999988753     222221 1223333445567888899999999999999887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=0.0016  Score=54.32  Aligned_cols=213  Identities=12%  Similarity=0.054  Sum_probs=120.8

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      +.+..+... .....++|.        ++++++++-..++.|..||.... ....                         
T Consensus        23 ~~~~~~p~~-~~pegia~~--------~~g~lyv~d~~~~~I~~~d~~g~-~~~~-------------------------   67 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASA--------PDGTIFVTNHEVGEIVSITPDGN-QQIH-------------------------   67 (306)
T ss_dssp             EEEEEECTT-CCEEEEEEC--------TTSCEEEEETTTTEEEEECTTCC-EEEE-------------------------
T ss_pred             eEeEeCCCC-CCcceEEEC--------CCCCEEEEeCCCCeEEEECCCCc-eEEE-------------------------
Confidence            445555432 457789999        77887777667888888887542 1100                         


Q ss_pred             CceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC--eEEEEeccCCCcceEEEEEeccccccccc
Q 048511          100 SSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALG  177 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (351)
                             +.    ....+..+++.      +++++      +++.....  .|..+|..+  +.........    ....
T Consensus        68 -------~~----~~~~p~gia~~------~dG~l------~vad~~~~~~~v~~~d~~~--g~~~~~~~~~----~~~~  118 (306)
T 2p4o_A           68 -------AT----VEGKVSGLAFT------SNGDL------VATGWNADSIPVVSLVKSD--GTVETLLTLP----DAIF  118 (306)
T ss_dssp             -------EE----CSSEEEEEEEC------TTSCE------EEEEECTTSCEEEEEECTT--SCEEEEEECT----TCSC
T ss_pred             -------Ee----CCCCceeEEEc------CCCcE------EEEeccCCcceEEEEcCCC--CeEEEEEeCC----Cccc
Confidence                   00    12347788998      67776      66554332  466667665  5443222211    1122


Q ss_pred             eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc---cccc--ccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcC
Q 048511          178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW---QPQK--VPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAP  251 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~--~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~  251 (351)
                      ...++..+++..+++-..++.|+.+|..++....+   ....  .....-.....+  +|+++.|+.+ ...+.|.+|++
T Consensus       119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~  196 (306)
T 2p4o_A          119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV  196 (306)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred             cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence            34455555554444444578899998764311000   0000  111111234556  8888766544 55789999998


Q ss_pred             CC-ccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          252 WK-NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       252 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      .. +..     .....+...    .....+++.+  +|+++++....+.|.+++..++.
T Consensus       197 ~~~g~~-----~~~~~~~~~----~~P~gi~vd~--dG~l~va~~~~~~V~~~~~~G~~  244 (306)
T 2p4o_A          197 DSTDKP-----GEPEIFVEQ----TNIDDFAFDV--EGNLYGATHIYNSVVRIAPDRST  244 (306)
T ss_dssp             CTTSCB-----CCCEEEEES----CCCSSEEEBT--TCCEEEECBTTCCEEEECTTCCE
T ss_pred             CCCCCC-----CccEEEecc----CCCCCeEECC--CCCEEEEeCCCCeEEEECCCCCE
Confidence            64 221     011111111    2357789988  88888888888899999987654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=0.0021  Score=56.47  Aligned_cols=238  Identities=8%  Similarity=0.003  Sum_probs=130.5

Q ss_pred             ceeEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC-ce----eE
Q 048511           31 WIRSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS-SY----QV  104 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~  104 (351)
                      ....|+++        + ++..|+.+...+.|+.+|+..........  .......++++++++.|.+++. ..    .+
T Consensus       138 ~P~~lavd--------p~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFD--------PKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEE--------TTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEE
T ss_pred             CCCEEEEC--------CCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceE
Confidence            34678888        6 45566666555788889987654322221  3346778999999995555442 11    11


Q ss_pred             EEEEeccc---------cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          105 SVESLLIG---------HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       105 ~~~~~~~~---------h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      .... ..+         .......+++.|     .++.+      +++-..++.|..++...  +........    ...
T Consensus       208 ~~~~-~~g~~~~~~~l~~~~~p~giavdp-----~~g~l------yv~d~~~~~V~~~~~~~--~~~~~~~~~----~~~  269 (430)
T 3tc9_A          208 YILT-RESGFKVITELTKGQNCNGAETHP-----INGEL------YFNSWNAGQVFRYDFTT--QETTPLFTI----QDS  269 (430)
T ss_dssp             EEEE-GGGTSCSEEEEEECSSCCCEEECT-----TTCCE------EEEETTTTEEEEEETTT--TEEEEEEEC----SSS
T ss_pred             EEEe-CCCceeeeeeeccCCCceEEEEeC-----CCCEE------EEEECCCCEEEEEECCC--CcEEEEEEc----CCC
Confidence            1111 111         012235566773     25665      66666778899999876  433222221    112


Q ss_pred             cceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc---------------ccccEE-EEEee-------
Q 048511          176 LGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG---------------HFAAVM-DISWS-------  231 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~---------------~~~~v~-~v~~s-------  231 (351)
                      .....++|+|++++|+.+. ..+.|..++....... +.....+.+               .-.... .++..       
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~-~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKR-LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccc-ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            3467899999999665554 5689999887642100 000111110               011223 45543       


Q ss_pred             -cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc----ccc----------cccceeEEEEeeeCCCcEEEEecC
Q 048511          232 -RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR----PQV----------HGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       232 -p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~----------~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                       +++.++++-.....|+.++. ++..     ..  ....    ..+          .-.....+++.+ .++.++++-..
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~-~G~v-----~~--~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~-~~g~lyVaD~~  419 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTP-QGRV-----TT--FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE-ERECFFIGDRE  419 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECT-TSEE-----EE--EEECCTTSSSSCBCEETTTTCBCSSEEEEEEET-TTTEEEEEEGG
T ss_pred             CCCCeEEEEECCCcEEEEECC-CCcE-----EE--EEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC-CCCEEEEEECC
Confidence             33555565556778888884 3321     01  1110    001          112478899987 23667777667


Q ss_pred             CCeEEEEecC
Q 048511          297 EKVARVFEAP  306 (351)
Q Consensus       297 dg~v~vw~~~  306 (351)
                      ...|+.++++
T Consensus       420 n~rIr~i~~e  429 (430)
T 3tc9_A          420 NRRIRKIGYE  429 (430)
T ss_dssp             GTEEEEEEEC
T ss_pred             CCeEEEEccC
Confidence            7888887754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.21  E-value=0.0011  Score=56.45  Aligned_cols=164  Identities=10%  Similarity=-0.071  Sum_probs=99.3

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAH  193 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~  193 (351)
                      ..+..++|.+     .++.+      +++-...+.|..+++..  ......+.     ........+++++.+..| ++-
T Consensus        73 ~~~~~l~~d~-----~~~~l------y~~D~~~~~I~r~~~~g--~~~~~~~~-----~~~~~p~glavd~~~g~ly~~d  134 (349)
T 3v64_C           73 ENAIALDFHH-----RRELV------FWSDVTLDRILRANLNG--SNVEEVVS-----TGLESPGGLAVDWVHDKLYWTD  134 (349)
T ss_dssp             SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CSCEEEEC-----SSCSCCCEEEEETTTTEEEEEE
T ss_pred             CceEEEEEec-----cccEE------EEEeccCCceEEEecCC--CCceEEEe-----CCCCCccEEEEecCCCeEEEEc
Confidence            3478899985     44555      66656678899998876  32222111     112234678998755545 454


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCC-CcEEEEcCCCccccccCccceEEecccc
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHD-QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ...+.|.++++.....     ...+.........+++.|.+..|+ +-... +.|..+++.....        ..+..  
T Consensus       135 ~~~~~I~~~~~dG~~~-----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~--  199 (349)
T 3v64_C          135 SGTSRIEVANLDGAHR-----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------RIIAD--  199 (349)
T ss_dssp             TTTTEEEEEETTSCSC-----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EESCC--
T ss_pred             CCCCeEEEEcCCCCce-----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc--------EEEEE--
Confidence            5568999999876421     111222334578999999665554 44444 7788888764331        11111  


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhc
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKT  312 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~  312 (351)
                      ......+.+++++ .++.++++-...+.|..+++.+...+.
T Consensus       200 ~~~~~PnGla~d~-~~~~lY~aD~~~~~I~~~~~dG~~~~~  239 (349)
T 3v64_C          200 THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRKA  239 (349)
T ss_dssp             SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCCcceEEEeC-CCCEEEEEECCCCEEEEEeCCCCceEE
Confidence            1123468899997 245556666677899999988654443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.20  E-value=0.00019  Score=64.59  Aligned_cols=147  Identities=10%  Similarity=-0.045  Sum_probs=91.1

Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---------------e------------
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---------------A------------  198 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~------------  198 (351)
                      .++.+.+.|..+  .+...++.+..      ....++++|+|+++++.+.+.               .            
T Consensus       173 ~~~~vtvID~~t--~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          173 YVNVFTAVDADK--WEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EEEEEEEEETTT--TEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             cCceEEEEECCC--CeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            356899999998  67776666421      234577899999999888553               2            


Q ss_pred             -----------EEEEEcccCcccCccc-ccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccC--ccc
Q 048511          199 -----------FHLWRNVGVDIDNWQP-QKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMG--ENS  263 (351)
Q Consensus       199 -----------i~~~d~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~--~~~  263 (351)
                                 |.+.|..+.+.   .. +..+. -.....++.++|||+++++++ .+.+|.++|+.+.+.....  ...
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~---~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEAS---SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGC---CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             ccCCCeeEECcEEEEeCcccCC---ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                       44444443100   11 11221 122456789999999876665 5789999999855210000  000


Q ss_pred             eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          264 WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      -..+... .-+.....++|++  +|...++.--|+.|.+|++..
T Consensus       321 ~~v~~~v-~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          321 SAVVAEP-ELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGEEECC-BCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEEc-CCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence            0012222 2334578999999  887677888999999999864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.17  E-value=0.0012  Score=54.85  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             CCeEEEEecc---CCCcceEEEEEeccccc--------cccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCccc
Q 048511          147 DKTMMIWQPE---KTTGIWMNVVTVGELSH--------SALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQP  214 (351)
Q Consensus       147 d~~i~iwd~~---~~~~~~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~  214 (351)
                      +..|..+|+.   +  ++.+....+.....        .......++..++|+..++++.. +.|..++........+..
T Consensus        99 ~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~  176 (334)
T 2p9w_A           99 ASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW  176 (334)
T ss_dssp             CCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred             CCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence            6789999998   6  44444343321111        12347899999999999999988 888887776542111110


Q ss_pred             ccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--c--ccccceeEE-EEeeeCCCc
Q 048511          215 QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--Q--VHGHDINCV-TIIQGKGNH  289 (351)
Q Consensus       215 ~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~i~~~-~~~~~~~~~  289 (351)
                      ...........+.|+++|++..|++....+.+..+|+....       .+ ++...  -  ........+ ..-.  ++.
T Consensus       177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-------~~-~v~~~~~G~~~~~~~~dgilp~~~--~G~  246 (334)
T 2p9w_A          177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-------AW-PEPVKINGDFGTLSGTEKIVTVPV--GNE  246 (334)
T ss_dssp             CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-------CC-CEECEESSCCCCCTTEEEEEEEEE--TTE
T ss_pred             cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-------ce-eecccccCCcccccCccccccccc--CCE
Confidence            01011122346789999999988887679999999987432       11 11110  0  111123333 3323  566


Q ss_pred             E-EEEecCCCeEEEEecCc
Q 048511          290 R-FVSGADEKVARVFEAPL  307 (351)
Q Consensus       290 ~-l~s~~~dg~v~vw~~~~  307 (351)
                      . +++.+..+.+.+.+.++
T Consensus       247 vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEECSST
T ss_pred             EEEEEcCCCCEEEEECCCC
Confidence            6 56666677777777665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.16  E-value=0.0014  Score=57.64  Aligned_cols=240  Identities=12%  Similarity=0.077  Sum_probs=132.1

Q ss_pred             ceeEEEeeCCcccCCCCC--ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc---ee-E
Q 048511           31 WIRSLDFSLPVCTSGEAI--SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS---YQ-V  104 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~  104 (351)
                      ....|+|.        ++  +..|+.+...+.|+.++..++.......  .......++++++|.++++....   .. +
T Consensus       140 ~P~gvavd--------~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          140 NIWRMMFD--------PNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTGI  209 (433)
T ss_dssp             CCCEEEEC--------TTTTTCEEEEECBTSCEEEEETTTTEEEEECC--CCSCEEEEEECTTCCEEEEECCSCTTSEEE
T ss_pred             CCceEEEc--------cccCCCEEEEEeCCCCEEEEECCCCEEEEeec--CCCCccEEEECCCCCEEEEcCCCCcccceE
Confidence            35678888        53  3445545444889999987654432221  23457889999999955543311   11 1


Q ss_pred             EEEEecccc--------ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccccccc
Q 048511          105 SVESLLIGH--------EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSAL  176 (351)
Q Consensus       105 ~~~~~~~~h--------~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      .......+.        -.....+++.|     .++.+      +++-..++.|+.+|...  +.....+..  . ....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~P~giavd~-----~~G~l------yv~d~~~~~V~~~d~~~--g~~~~~~~~--~-~~~~  273 (433)
T 4hw6_A          210 YLFTRASGFTERLSLCNARGAKTCAVHP-----QNGKI------YYTRYHHAMISSYDPAT--GTLTEEEVM--M-DTKG  273 (433)
T ss_dssp             EEECGGGTTCCEEEEEECSSBCCCEECT-----TTCCE------EECBTTCSEEEEECTTT--CCEEEEEEE--C-SCCS
T ss_pred             EEEECCCCeeccccccccCCCCEEEEeC-----CCCeE------EEEECCCCEEEEEECCC--CeEEEEEec--c-CCCC
Confidence            111100111        11234456662     25555      55555678899999876  444222211  1 1112


Q ss_pred             ceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc---------------ccccEEEEEe---------e
Q 048511          177 GFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG---------------HFAAVMDISW---------S  231 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~---------------~~~~v~~v~~---------s  231 (351)
                      .-..++|+|++++|+.+. ..+.|+.+++...... +.....+.+               .-.....+++         .
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            234799999999666555 5688999887532100 000011111               1124677898         6


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--------------cccccceeEEEEeeeCCCcEEEEecCC
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--------------QVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      +++.++++-.....|+.++. ++..     ..  .....              ...-.....+++.| .++.++++=...
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~-~G~v-----~t--~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~-~~g~lyVaD~~n  423 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTP-EGRV-----TT--YAGRGNSREWGYVDGELRSQALFNHPTSIAYDM-KRKCFYIGDCDN  423 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECT-TSEE-----EE--EECCCTTCSSCCBCEETTTTCBCSSEEEEEEET-TTTEEEEEEGGG
T ss_pred             CCCcEEEEECCCCEEEEECC-CCCE-----EE--EEeCCCCCccccCCCccccccEeCCCcEEEEEC-CCCEEEEEeCCC
Confidence            77777777667788999985 3321     00  11100              00112367899983 267777777778


Q ss_pred             CeEEEEecC
Q 048511          298 KVARVFEAP  306 (351)
Q Consensus       298 g~v~vw~~~  306 (351)
                      .+|+.++++
T Consensus       424 ~rIr~i~~e  432 (433)
T 4hw6_A          424 HRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEecC
Confidence            888888754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.0024  Score=60.74  Aligned_cols=265  Identities=9%  Similarity=-0.004  Sum_probs=141.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEee-------eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACEL-------KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~   74 (351)
                      |+.++-|..|+... +.+......       .-....|.++...        .++. |..|+.++-|..|+..+......
T Consensus       329 gt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--------~~g~-lWigt~~~Gl~~~~~~~~~~~~~  398 (781)
T 3v9f_A          329 GTWGGGINFISNAP-PTFHTWSYSPTQMNESSLSNKVVSSVCDD--------GQGK-LWIGTDGGGINVFENGKRVAIYN  398 (781)
T ss_dssp             EEBSSCEEEECSSC-CSCEEEC----CCCSSCCSSSCEEEEEEC--------TTSC-EEEEEBSSCEEEEETTEEEEECC
T ss_pred             EecCCeEEEeCCCC-CcceeeccCccccccCCCCCcceEEEEEc--------CCCC-EEEEeCCCcEEEEECCCCeEEEc
Confidence            34455677777665 443332111       0123568888887        5565 44566556688888765432211


Q ss_pred             e--ecccccceeeeEeeecCCeEEecCCceeEEE------EEecc---ccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           75 T--QSTYRKEVISLASYIEGPVLVAGSSSYQVSV------ESLLI---GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        75 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~---~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      .  .......+.++....++.+.+.....+-...      ...+.   .....|.++...      +++.       |..
T Consensus       399 ~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d------~~g~-------lwi  465 (781)
T 3v9f_A          399 KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED------KNKK-------IWI  465 (781)
T ss_dssp             -----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC------TTSE-------EEE
T ss_pred             cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC------CCCC-------EEE
Confidence            1  0112345666766667776664332222211      11111   123568888877      5665       444


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccc
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFA  223 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  223 (351)
                      |+. +-|..||..+  +.................|.++...+++.+. .|+.++-|..||..+.+...+.....  ....
T Consensus       466 gt~-~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~--l~~~  539 (781)
T 3v9f_A          466 GTH-AGVFVIDLAS--KKVIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVRKFNQYEG--FCSN  539 (781)
T ss_dssp             EET-TEEEEEESSS--SSCCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEEEECTTTT--CSCS
T ss_pred             EEC-CceEEEeCCC--CeEEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEEEccCCCC--CCCC
Confidence            555 5588899876  4332221111001123578999998888754 45554447778876653211111011  1245


Q ss_pred             cEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccc-ccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          224 AVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQ-VHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       224 ~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .|.++...++|.+.++. .+|.|..||..+..        +....... .....|.++...+  ++.+.+++ .+| |..
T Consensus       540 ~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~--------~~~~~~~~gl~~~~i~~i~~d~--~g~lW~~t-~~G-l~~  606 (781)
T 3v9f_A          540 TINQIYRSSKGQMWLAT-GEGLVCFPSARNFD--------YQVFQRKEGLPNTHIRAISEDK--NGNIWAST-NTG-ISC  606 (781)
T ss_dssp             CEEEEEECTTSCEEEEE-TTEEEEESCTTTCC--------CEEECGGGTCSCCCCCEEEECS--SSCEEEEC-SSC-EEE
T ss_pred             eeEEEEECCCCCEEEEE-CCCceEEECCCCCc--------EEEccccCCCCCceEEEEEECC--CCCEEEEc-CCc-eEE
Confidence            78999988888866544 46665889987654        12222211 1223477777776  66655554 555 455


Q ss_pred             EecCch
Q 048511          303 FEAPLS  308 (351)
Q Consensus       303 w~~~~~  308 (351)
                      |+....
T Consensus       607 ~~~~~~  612 (781)
T 3v9f_A          607 YITSKK  612 (781)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            665533

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.14  E-value=0.0026  Score=53.65  Aligned_cols=232  Identities=9%  Similarity=0.084  Sum_probs=123.3

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc--cccceeeeEeeecCCeEEecCCceeEE-
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST--YRKEVISLASYIEGPVLVAGSSSYQVS-  105 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-  105 (351)
                      ...+.+|.|.        + +..++ ++.++.|.. ..+.++.-......  .......+.+..++..++++......+ 
T Consensus        79 ~~~~~~i~~~--------~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S  147 (327)
T 2xbg_A           79 DYRFNSVSFQ--------G-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT  147 (327)
T ss_dssp             CCEEEEEEEE--------T-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE
T ss_pred             CccEEEEEec--------C-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE
Confidence            3468888888        5 33444 455664433 22223322222111  122355666666666666553221111 


Q ss_pred             -----EEEe-ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceE
Q 048511          106 -----VESL-LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFY  179 (351)
Q Consensus       106 -----~~~~-~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~  179 (351)
                           .|.. .......+..+.+.      +++.+      ++.+...+..+-+|-..  ..+.. +.    ......+.
T Consensus       148 ~DgG~tW~~~~~~~~~~~~~~~~~------~~~~~------~~~g~~G~~~~S~d~gG--~tW~~-~~----~~~~~~~~  208 (327)
T 2xbg_A          148 KDSGKNWQALVQEAIGVMRNLNRS------PSGEY------VAVSSRGSFYSTWEPGQ--TAWEP-HN----RTTSRRLH  208 (327)
T ss_dssp             SSTTSSEEEEECSCCCCEEEEEEC------TTSCE------EEEETTSSEEEEECTTC--SSCEE-EE----CCSSSCEE
T ss_pred             cCCCCCCEEeecCCCcceEEEEEc------CCCcE------EEEECCCcEEEEeCCCC--CceeE-CC----CCCCCccc
Confidence                 1221 22344568889998      56666      66554444333344311  22222 11    12345688


Q ss_pred             EEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccc
Q 048511          180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASL  258 (351)
Q Consensus       180 ~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~  258 (351)
                      .+.+.+++..+ .++.+|.+++.+...+..  |..+..- ..+...+.++.+.+++.+++++ .++.| .+....+.   
T Consensus       209 ~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~---  280 (327)
T 2xbg_A          209 NMGFTPDGRLW-MIVNGGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ---  280 (327)
T ss_dssp             EEEECTTSCEE-EEETTTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS---
T ss_pred             eeEECCCCCEE-EEeCCceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc---
Confidence            89999988755 455678877764322211  2222211 1122358889999888776665 46766 33444443   


Q ss_pred             cCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          259 MGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                          .|..+.........+.++.|.+  ++ .+++++.+|.|.-++-
T Consensus       281 ----tW~~~~~~~~~~~~~~~v~~~~--~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          281 ----TWQQDVDVKKVPSNFYKILFFS--PD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ----SCEECGGGTTSSSCCCEEEEEE--TT-EEEEECSTTEEEEECC
T ss_pred             ----ccEEcCccCCCCCCeEEEEEEC--CC-ceEEEcCCceEEEEcC
Confidence                7777654333335578898876  45 4666677888766653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.12  E-value=0.0021  Score=51.80  Aligned_cols=218  Identities=12%  Similarity=0.097  Sum_probs=125.9

Q ss_pred             eeeecCCceeEEEeeCCcccCCCCCcc-EEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce
Q 048511           24 ELKGHTDWIRSLDFSLPVCTSGEAISI-LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY  102 (351)
Q Consensus        24 ~~~~h~~~V~~l~~~~~~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (351)
                      .+.+-.+.+..|+|.        ++++ ++++...++.|...|.. ++....+.                          
T Consensus        21 ~l~g~~~~lSGla~~--------~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~--------------------------   65 (255)
T 3qqz_A           21 EIAGITNNISSLTWS--------AQSNTLFSTINKPAAIVEMTTN-GDLIRTIP--------------------------   65 (255)
T ss_dssp             ECTTCCSCEEEEEEE--------TTTTEEEEEEETTEEEEEEETT-CCEEEEEE--------------------------
T ss_pred             ECCCcccCcceeEEe--------CCCCEEEEEECCCCeEEEEeCC-CCEEEEEe--------------------------
Confidence            455666789999999        5555 44556677788877876 43322221                          


Q ss_pred             eEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEecc-ccccccceEE
Q 048511          103 QVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGE-LSHSALGFYG  180 (351)
Q Consensus       103 ~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~i~~  180 (351)
                             +.+ ......|++.      .++.+      +++.-.++.+.++++..... ..+....+.. ..........
T Consensus        66 -------l~g-~~D~EGIa~~------~~g~~------~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EG  125 (255)
T 3qqz_A           66 -------LDF-VKDLETIEYI------GDNQF------VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEG  125 (255)
T ss_dssp             -------CSS-CSSEEEEEEC------STTEE------EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEE
T ss_pred             -------cCC-CCChHHeEEe------CCCEE------EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcce
Confidence                   122 1346677887      66666      66665678888888876321 1222332211 1133456789


Q ss_pred             EEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCcccccc--c--ccccccEEEEEeecCC-CEEEEEeCCCcEEEEcCCCc
Q 048511          181 GHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKV--P--SGHFAAVMDISWSRSS-DYLLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~--~--~~~~~~v~~v~~sp~~-~~l~s~~~dg~i~vwd~~~~  254 (351)
                      ++|+|.++.|+++.......+|.+..... ........  +  ..+...+.+++++|.. ++++.....+.+.++|....
T Consensus       126 LA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          126 LAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             EEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             EEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence            99999998888877765556666542100 00011100  0  0123357889999965 45566666788999997644


Q ss_pred             cccccCccceEEec-cccc---cccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          255 VASLMGENSWHEVA-RPQV---HGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       255 ~~~~~~~~~~~~~~-~~~~---~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      ..      ....+. ...+   .-...-.|+|.+  +|.++++ ++-..+++|..
T Consensus       206 ~~------~~~~L~~g~~~l~~~~~qpEGia~d~--~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          206 VI------GEMSLTKGSRGLSHNIKQAEGVAMDA--SGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EE------EEEECSTTGGGCSSCCCSEEEEEECT--TCCEEEE-ETTTEEEEEEC
T ss_pred             EE------EEEEcCCccCCcccccCCCCeeEECC--CCCEEEE-cCCceEEEEEe
Confidence            21      111111 1100   012467899999  8876666 56667766653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.10  E-value=0.0036  Score=57.30  Aligned_cols=60  Identities=8%  Similarity=0.086  Sum_probs=38.3

Q ss_pred             CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      +|.|.-||+.+++      ..|+.-...     +...-....  .+.+++.++.|+.++.||.. |+.+-.++-
T Consensus       452 ~G~l~A~D~~tG~------~~W~~~~~~-----~~~~g~~~t--agg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          452 LGQIKAYNAITGD------YKWEKMERF-----AVWGGTMAT--AGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CEEEEEECTTTCC------EEEEEEESS-----CCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCeEEEEECCCCC------EEeEecCCC-----CccCcceEe--cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            4678888888876      345432211     121111222  46677779999999999976 887776653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.10  E-value=0.0029  Score=52.69  Aligned_cols=137  Identities=7%  Similarity=-0.077  Sum_probs=74.0

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEe-c--cccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEccc-CcccCcccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTV-G--ELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVG-VDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~~~~~  215 (351)
                      +++-..++.|.++|.....+........ .  .....-.....+  +++++.|+.+. ..+.|..|++.. +..   ...
T Consensus       131 ~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---~~~  205 (306)
T 2p4o_A          131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---GEP  205 (306)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---CCC
T ss_pred             EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---Ccc
Confidence            5554457888888876411111100000 0  000111123445  78887666655 568999999875 221   111


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEe---eeCCCcEEE
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII---QGKGNHRFV  292 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~l~  292 (351)
                      ..+. .......+++.++|+++++....+.|.++|.. ++.        ..+..........++++|.   +  ++..|.
T Consensus       206 ~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~--------~~~~~~~~~~~~p~~~a~~g~~~--d~~~Ly  273 (306)
T 2p4o_A          206 EIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST--------TIIAQAEQGVIGSTAVAFGQTEG--DCTAIY  273 (306)
T ss_dssp             EEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE--------EEEECGGGTCTTEEEEEECCSTT--TTTEEE
T ss_pred             EEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE--------EEEeecccccCCceEEEEecccC--CCCEEE
Confidence            1111 11345678999999887777778899999974 331        1222222223457899997   6  554444


Q ss_pred             Ee
Q 048511          293 SG  294 (351)
Q Consensus       293 s~  294 (351)
                      ..
T Consensus       274 Vt  275 (306)
T 2p4o_A          274 VV  275 (306)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.06  E-value=0.0031  Score=57.70  Aligned_cols=62  Identities=11%  Similarity=0.166  Sum_probs=41.2

Q ss_pred             CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       243 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +|.|.-||+.+++      ..|+.-...     ++..-....  .+.+++.|+.|+.++.||.+ |+.+-.++.-.
T Consensus       465 ~G~l~A~D~~tG~------~~W~~~~~~-----~~~~g~~~t--agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~  527 (582)
T 1flg_A          465 VGSLRAMDPVSGK------VVWEHKEHL-----PLWAGVLAT--AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             SEEEEEECTTTCC------EEEEEEESS-----CCCSCCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEEEEECCCCC------EEEEecCCC-----CCcccceEe--CCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence            5789999998887      345433211     222222222  36678889999999999986 88887776543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.05  E-value=0.0016  Score=59.65  Aligned_cols=54  Identities=11%  Similarity=-0.016  Sum_probs=32.4

Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .|.|..||+.+++.     +-+.. +..+...-.+...+.+++.++.|+.++.||.++++
T Consensus       452 ~G~l~A~D~~tG~~-----~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~  505 (599)
T 1w6s_A          452 LGQIKAYNAITGDY-----KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (599)
T ss_dssp             CEEEEEECTTTCCE-----EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCeEEEEECCCCCE-----EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence            36677777777642     11111 11111111123356677789999999999999998

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.04  E-value=0.00066  Score=64.24  Aligned_cols=153  Identities=13%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             EEEecCCCCCCCCCcccCCCceeEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511          119 SVQWEPPSTAPSDGVSCQQPSSILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH  193 (351)
Q Consensus       119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  193 (351)
                      .+.|+      +|++.      |+....|     ..|.++++.+........+.  .  ........+.|+||+++|+..
T Consensus       225 ~~~Ws------pDg~~------l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~--~--~~~~~~~~~~~SpDg~~l~~~  288 (751)
T 2xe4_A          225 EIVWG------PDHTS------LFYVTKDETLRENKVWRHVMGKLQSEDVCLYE--E--HNPLFSAFMYKAADTNTLCIG  288 (751)
T ss_dssp             CCEEC------SSTTE------EEEEEECTTCCEEEEEEEETTSCGGGCEEEEE--C--CCTTCEEEEEECTTSSEEEEE
T ss_pred             eEEEe------cCCCE------EEEEEECCCCCCCEEEEEECCCCchhcEEEEe--c--CCCceEEEEEECCCCCEEEEE
Confidence            56788      67766      6665554     25777777652211111221  0  112345678999999988876


Q ss_pred             ee---CCeEEEEEcccCcccCccc--ccccccccccEEEEEeecCCCEEEEEeCC----CcEEEEcCCCccccccCccce
Q 048511          194 GY---GGAFHLWRNVGVDIDNWQP--QKVPSGHFAAVMDISWSRSSDYLLSVSHD----QTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       194 ~~---dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~  264 (351)
                      ..   ...|+++|+.++..   ..  ............++.|+.++.+++....+    ..|..+|+.+..       .|
T Consensus       289 ~~~~~~~~l~~~d~~~~~~---~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~-------~~  358 (751)
T 2xe4_A          289 SQSPETAEVHLLDLRKGNA---HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS-------DW  358 (751)
T ss_dssp             EECSSCEEEEEEESSSCTT---CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT-------CC
T ss_pred             ecCCCCceEEEEECCCCCC---CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc-------cc
Confidence            63   34688888876421   11  11222233444555555444444444433    356666765421       22


Q ss_pred             EE-ecccccccc--ceeEEEEeeeCCCcEEEEecCCCeEEEE
Q 048511          265 HE-VARPQVHGH--DINCVTIIQGKGNHRFVSGADEKVARVF  303 (351)
Q Consensus       265 ~~-~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~v~vw  303 (351)
                      .. +.   .+..  .+..+++.   ++.++++...++..+||
T Consensus       359 ~~~li---~~~~~~~l~~~~~~---~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          359 SHVLV---DHSEDVFMESIAVR---SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             CCEEE---CCCSSEEEEEEEEC---SSEEEEEEEETTEEEEE
T ss_pred             eeeEE---CCCCCcEEEEEEEE---CCEEEEEEEeCCEEEEE
Confidence            22 21   1222  34444443   35667777788865554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.04  E-value=0.0029  Score=52.48  Aligned_cols=145  Identities=10%  Similarity=0.116  Sum_probs=77.9

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  210 (351)
                      ++.|+.+     ..+.+||+.+  ..+...-.+.   ........+.+  +++.++.|+.+     ..+.+||+.+..  
T Consensus       116 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--  186 (301)
T 2vpj_A          116 YVSGGFDGSRRHTSMERYDPNI--DQWSMLGDMQ---TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH--  186 (301)
T ss_dssp             EEECCBCSSCBCCEEEEEETTT--TEEEEEEECS---SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred             EEEcccCCCcccceEEEEcCCC--CeEEECCCCC---CCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence            5555543     3578888887  5555433211   11111222222  66777777654     468899987754  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                       |..+..+.........+.  -++++++.|+.+     ..+.+||+.+.        .|..+..+....... ++ ... 
T Consensus       187 -W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~r~~~-~~-~~~-  252 (301)
T 2vpj_A          187 -WTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD--------SWTTVTSMTTPRCYV-GA-TVL-  252 (301)
T ss_dssp             -EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT--------EEEEECCCSSCCBSC-EE-EEE-
T ss_pred             -EEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCC--------cEEECCCCCCcccce-eE-EEE-
Confidence             233322222111112222  256777777764     46889998765        466665443222212 22 223 


Q ss_pred             CCCcEEEEecCC-----CeEEEEecCchh
Q 048511          286 KGNHRFVSGADE-----KVARVFEAPLSF  309 (351)
Q Consensus       286 ~~~~~l~s~~~d-----g~v~vw~~~~~~  309 (351)
                       ++.+++.|+.+     ..+.+||+....
T Consensus       253 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          253 -RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             -TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             -CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             57788888765     457788876443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.03  E-value=0.0022  Score=55.41  Aligned_cols=163  Identities=10%  Similarity=-0.065  Sum_probs=98.4

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAH  193 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~  193 (351)
                      ..+..++|.+     .++.+      +++-...+.|..+++..  ......+.     ........+++++.+..| ++-
T Consensus       116 ~~~~gl~~d~-----~~~~l------y~~D~~~~~I~r~~~~g--~~~~~~~~-----~~~~~p~glavd~~~g~lY~~d  177 (386)
T 3v65_B          116 ENAIALDFHH-----RRELV------FWSDVTLDRILRANLNG--SNVEEVVS-----TGLESPGGLAVDWVHDKLYWTD  177 (386)
T ss_dssp             SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CCEEEEEC-----SSCSCCCCEEEETTTTEEEEEE
T ss_pred             CccEEEEEec-----CCCeE------EEEeCCCCcEEEEecCC--CCcEEEEe-----CCCCCccEEEEEeCCCeEEEEc
Confidence            3477899995     44555      66666778899999875  32222211     111234578888765555 444


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CC-CcEEEEcCCCccccccCccceEEecccc
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HD-QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ...+.|.++++....     ....+.........+++.|.+..|+... .. +.|..+++.....        ..+..  
T Consensus       178 ~~~~~I~~~~~dg~~-----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~--  242 (386)
T 3v65_B          178 SGTSRIEVANLDGAH-----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--------RIIAD--  242 (386)
T ss_dssp             TTTTEEEECBTTSCS-----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--
T ss_pred             CCCCeEEEEeCCCCc-----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--------EEEEE--
Confidence            456889888887642     1112222334678999998766655443 34 6788888754431        11111  


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhh
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLK  311 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~  311 (351)
                      ......+.+++++ .++.++++-+..+.|..+++.+...+
T Consensus       243 ~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~  281 (386)
T 3v65_B          243 THLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHRK  281 (386)
T ss_dssp             SSCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred             CCCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCCCeeE
Confidence            1123468899997 24556666667889999998865443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.02  E-value=0.00056  Score=56.85  Aligned_cols=166  Identities=8%  Similarity=0.040  Sum_probs=104.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc--c-cccceEEEEE---cCCCCEE
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS--H-SALGFYGGHW---SPDGRSI  190 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~i~~i~~---~~~~~~l  190 (351)
                      -.++.|.+     .++.+      +++.-..++|..||...  +..... .+....  + ....+..+.|   .|+++++
T Consensus        15 PE~~~wd~-----~~g~~------~vs~l~~g~V~~~~~~~--~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~   80 (334)
T 2p9w_A           15 PEDTIYDR-----TRQVF------YQSNLYKGRIEVYNPKT--QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLF   80 (334)
T ss_dssp             CSCEEEET-----TTTEE------EEEETTTTEEEEECTTT--CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEE
T ss_pred             CcCccCcC-----CCCEE------EEEeccCCEEEEEcCCC--CeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEE
Confidence            44678874     34555      55555799999999875  333222 222111  1 1224578999   6887777


Q ss_pred             EEEee-------------CCeEEEEEcc---cCcccCccccccccc-----------ccccEEEEEeecCCCEEEEEeCC
Q 048511          191 LAHGY-------------GGAFHLWRNV---GVDIDNWQPQKVPSG-----------HFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       191 ~~~~~-------------dg~i~~~d~~---~~~~~~~~~~~~~~~-----------~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      ++...             +..|..||+.   +++..   ....+..           -......++..++|+..++++.-
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~---~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~  157 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV---WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG  157 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS---EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE---EEecCccccccccccccccccCCceeEECCCCCEEEeCCCC
Confidence            75442             6789999998   55321   1111111           11347899999999999998888


Q ss_pred             -CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          244 -QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       244 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       +.|...+.....     ...|..-..........+.++++|  ++.+|++...+|.+..+|+.
T Consensus       158 ~~~I~rV~pdG~~-----~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          158 MPAIARVSADGKT-----VSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SCEEEEECTTSCC-----EEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECS
T ss_pred             CCeEEEEeCCCCE-----EeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCC
Confidence             888877775443     122322111112223478999999  88877777669999999977

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.00  E-value=0.0095  Score=56.35  Aligned_cols=166  Identities=9%  Similarity=-0.093  Sum_probs=99.2

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      .....|++.+     ..+++      +++-...+.|.+.++..  .. ...+..    ..-.....|+++|...+|+.+.
T Consensus       471 ~~P~GLAvD~-----~~~~L------Y~tD~~~~~I~v~~ldG--~~-~~~l~~----~~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          471 QAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-RKTLFR----ENGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             SCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--SS-EEEEEE----CTTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceeeeee-----cCCcE------EEEecCCCeEEEEeCCC--Ce-EEEEEe----CCCCCcceEEEecCCCCEEEec
Confidence            3455777773     23355      66666788999999875  22 222221    2223478999999876666655


Q ss_pred             e-C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEecccc
Q 048511          195 Y-G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       195 ~-d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      . . +.|...++.....     ...+...-.....|++.+.+..|+.+ .....|..+++.....       ...+.. .
T Consensus       533 ~g~~~~I~~~~~dG~~~-----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~-~  599 (791)
T 3m0c_C          533 WGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILED-E  599 (791)
T ss_dssp             CSSSCEEEEEETTSCCE-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEEC-T
T ss_pred             CCCCCeEEEEecCCCce-----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecC-C
Confidence            3 2 7888888876431     11222233568899999876666555 4467899998865431       111111 1


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN  314 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~  314 (351)
                      ..-.....|++..   +.++++-...+.|...+. .+..+..+.
T Consensus       600 ~~l~~P~glav~~---~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          600 KRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TTTSSEEEEEEET---TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CccCCCCEEEEeC---CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            1111244666643   567777777888888874 465555553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.95  E-value=0.0027  Score=52.85  Aligned_cols=148  Identities=8%  Similarity=0.091  Sum_probs=79.0

Q ss_pred             eEEeecC------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---------CCeEEEEEcc
Q 048511          141 ILSASMD------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---------GGAFHLWRNV  205 (351)
Q Consensus       141 l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---------dg~i~~~d~~  205 (351)
                      ++.|+.+      ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.         -..+.+||+.
T Consensus       105 yv~GG~~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          105 YTSGGSEVGNSALYLFECYDTRT--ESWHTKPS---MLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             EEECCBBTTBSCCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             EEECCCCCCCcEeeeEEEEeCCC--CceEeCCC---CcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence            6666654      4588889887  55544322   1111111222222  5666666664         3458899987


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      +..   |..+..+......-. ++.. ++++++.|+.+     ..+.+||+.+.        .|..+..+........++
T Consensus       178 ~~~---W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~~~~  244 (306)
T 3ii7_A          178 TET---WTELCPMIEARKNHG-LVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--------EWKMVSPMPWKGVTVKCA  244 (306)
T ss_dssp             TTE---EEEECCCSSCCBSCE-EEEE-TTEEEEECCEETTEEBCCEEEEETTTT--------EEEECCCCSCCBSCCEEE
T ss_pred             CCe---EEECCCccchhhcce-EEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--------cEEECCCCCCCccceeEE
Confidence            764   233332222111112 2222 56677777653     35888988665        477665443322222222


Q ss_pred             EEeeeCCCcEEEEecCC-----CeEEEEecCchhhhc
Q 048511          281 TIIQGKGNHRFVSGADE-----KVARVFEAPLSFLKT  312 (351)
Q Consensus       281 ~~~~~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~  312 (351)
                      .+    ++.+++.|+.+     ..+.+||+....-..
T Consensus       245 ~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          245 AV----GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             EE----TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             EE----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            22    57788888854     468888887543333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.92  E-value=0.006  Score=55.76  Aligned_cols=54  Identities=9%  Similarity=0.063  Sum_probs=34.4

Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +|.|..||+.+++.     +-+.... ..+..-.....+.+++.++.|+.++.||.++++
T Consensus       465 ~G~l~A~D~~tG~~-----~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~  518 (582)
T 1flg_A          465 VGSLRAMDPVSGKV-----VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             SEEEEEECTTTCCE-----EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEECCCCCE-----EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence            57888899888753     2121111 112111222346678889999999999999998

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.88  E-value=0.0078  Score=50.38  Aligned_cols=168  Identities=10%  Similarity=-0.076  Sum_probs=97.1

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEeccccccccceEEEEEcCCCCEEE-E
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGRSIL-A  192 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~  192 (351)
                      ..+..++|.+     .++.+      +++-...+.|..+++.... +.....+.    ...-.....+++++.+..|+ +
T Consensus        30 ~~p~g~~~d~-----~~~~l------y~~D~~~~~I~~~~~~g~~~~~~~~~~~----~~~~~~p~glavd~~~~~ly~~   94 (316)
T 1ijq_A           30 RNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWT   94 (316)
T ss_dssp             SSEEEEEEET-----TTTEE------EEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEEE
T ss_pred             CceEEEEEEe-----CCCEE------EEEECCCCcEEEEECCCCCCCcccEEEE----eCCCCCcCEEEEeecCCeEEEE
Confidence            3567889984     34455      6666667889999887410 01111111    01112356788987555454 4


Q ss_pred             EeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C-CcEEEEcCCCccccccCccceEEeccc
Q 048511          193 HGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D-QTTRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       193 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                      -...+.|.++++.....     ...+.........+++.|.+..|+.+.. . +.|..+++....        .+.+.. 
T Consensus        95 d~~~~~I~~~~~~g~~~-----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--------~~~~~~-  160 (316)
T 1ijq_A           95 DSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVT-  160 (316)
T ss_dssp             ETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--------EEEEEC-
T ss_pred             ECCCCEEEEEeCCCCce-----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--------eEEEEE-
Confidence            45678999999876421     1112222346789999996665554443 2 678888875432        111211 


Q ss_pred             cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          271 QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                       ......+.+++++ .++.++++-+..+.|..+++.+...+.+
T Consensus       161 -~~~~~P~gla~d~-~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          161 -ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             -SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -CCCCCceEEEEec-cCCEEEEEECCCCeEEEEecCCCceEEE
Confidence             1123478899997 2345556666778999999987555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.88  E-value=0.0062  Score=52.90  Aligned_cols=169  Identities=10%  Similarity=-0.059  Sum_probs=99.2

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCEE-E
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRSI-L  191 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~  191 (351)
                      ...+..++|.+     .++.+      +++-...+.|+.+++..... .....+.    .........+++++.+..| +
T Consensus       111 ~~~~~~l~~d~-----~~~~l------ywsD~~~~~I~~~~~~g~~~~~~~~~~~----~~~~~~p~glavD~~~~~lY~  175 (400)
T 3p5b_L          111 LRNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYW  175 (400)
T ss_dssp             CSCEEEEEEET-----TTTEE------EEEETTTTEEEEEEC------CCCEEEE----CSSCSCEEEEEEETTTTEEEE
T ss_pred             cCcceEEeeee-----ccCce------EEEecCCCeEEEEEcccCCCCCcceEEE----eCCCCCcccEEEEecCCceEE
Confidence            45678899995     34555      56655678888888864110 1111111    1223356789998854444 4


Q ss_pred             EEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEecc
Q 048511          192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      +-...+.|.+.++....     ....+.........|++.|.+.+|+....  .+.|...++.....        ..+..
T Consensus       176 ~d~~~~~I~~~~~~g~~-----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~~~~  242 (400)
T 3p5b_L          176 TDSVLGTVSVADTKGVK-----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLVT  242 (400)
T ss_dssp             EETTTTEEEEECTTTCS-----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--------EEEEC
T ss_pred             EECCCCeEEEEeCCCCc-----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--------EEEEE
Confidence            44567899999987652     11122223345789999996666554432  46788888765431        11111


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                        ..-...+.|++++ .++.++++-.....|..+++.+...+.+
T Consensus       243 --~~l~~P~glavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          243 --ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             --SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             --CCCCceEEEEEEe-CCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence              1123478899997 2345555556778999999887655544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.88  E-value=0.0086  Score=50.39  Aligned_cols=224  Identities=10%  Similarity=0.108  Sum_probs=116.1

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEeeecCCeEEecCCceeEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQVS  105 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~  105 (351)
                      ...+.+|.|.        ..+..++ ++.+|.| +...+.++.-......   .......+.+.+ +..++++.. +.+.
T Consensus        35 ~~~~~~v~~~--------~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~-g~i~  102 (327)
T 2xbg_A           35 TATILDMSFI--------DRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEP-PIML  102 (327)
T ss_dssp             SSCEEEEEES--------SSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEET-TEEE
T ss_pred             CCcEEEEEEC--------CCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECC-CeEE
Confidence            4578999987        5566666 5567765 3333333322211111   123456677764 444444322 2211


Q ss_pred             -------EEEecc---ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          106 -------VESLLI---GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       106 -------~~~~~~---~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                             .|....   .+...+..+.+.      .++..      ++.+ .++.|  |.-......+.....     ...
T Consensus       103 ~S~DgG~tW~~~~~~~~~~~~~~~i~~~------~~~~~------~~~~-~~g~v--~~S~DgG~tW~~~~~-----~~~  162 (327)
T 2xbg_A          103 HTTDGGQSWSQIPLDPKLPGSPRLIKAL------GNGSA------EMIT-NVGAI--YRTKDSGKNWQALVQ-----EAI  162 (327)
T ss_dssp             EESSTTSSCEECCCCTTCSSCEEEEEEE------ETTEE------EEEE-TTCCE--EEESSTTSSEEEEEC-----SCC
T ss_pred             EECCCCCCceECccccCCCCCeEEEEEE------CCCCE------EEEe-CCccE--EEEcCCCCCCEEeec-----CCC
Confidence                   122211   123456777776      45555      5554 45543  322221123333222     234


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      ..+..+++.+++.+++++...+..+-.|-. +  ..|+.+.  ......+..+.+.+++++++ ++.+|.+++.+...+.
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G--~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q--TAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTT-C--SSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCC-C--CceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC
Confidence            468899999988877766444433333321 1  1123332  12345788899999987665 4567888776422233


Q ss_pred             ccccCccceEEeccc-cccccceeEEEEeeeCCCcEEEEecCCCeE
Q 048511          256 ASLMGENSWHEVARP-QVHGHDINCVTIIQGKGNHRFVSGADEKVA  300 (351)
Q Consensus       256 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v  300 (351)
                             .|..+... ......+.++++.+  ++.+++++. +|.|
T Consensus       237 -------tW~~~~~~~~~~~~~~~~v~~~~--~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          237 -------NWGELLSPLRRNSVGFLDLAYRT--PNEVWLAGG-AGAL  272 (327)
T ss_dssp             -------EECCCBCTTSSCCSCEEEEEESS--SSCEEEEES-TTCE
T ss_pred             -------eeEeccCCcccCCcceEEEEecC--CCEEEEEeC-CCeE
Confidence                   55554433 12234578888887  676666654 5655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.87  E-value=0.0045  Score=51.35  Aligned_cols=147  Identities=14%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             eEEeecCC-----eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-------CeEEEEEcccCc
Q 048511          141 ILSASMDK-----TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-------GAFHLWRNVGVD  208 (351)
Q Consensus       141 l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-------g~i~~~d~~~~~  208 (351)
                      ++.|+.++     .+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+       ..+.+||+.+..
T Consensus       112 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          112 YAVGGFDGSTGLSSVEAYNIKS--NEWFHVAP---MNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             EEEEEECSSCEEEEEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             EEEcCCCCCccCceEEEEeCCC--CeEeecCC---CCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            66666543     477888887  55544322   1111112222222  56666666643       358889987754


Q ss_pred             ccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEe
Q 048511          209 IDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTII  283 (351)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (351)
                         |..+..+.........+.  -++++++.|+.+     ..+.+||+.+.        .|..+..+...... ..++. 
T Consensus       185 ---W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~~~~r~~-~~~~~-  249 (302)
T 2xn4_A          185 ---WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN--------AWRQVADMNMCRRN-AGVCA-  249 (302)
T ss_dssp             ---EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT--------EEEEECCCSSCCBS-CEEEE-
T ss_pred             ---EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC--------CEeeCCCCCCcccc-CeEEE-
Confidence               233322222111112222  256777777754     36889998665        46666544322211 12222 


Q ss_pred             eeCCCcEEEEecCCC-----eEEEEecCchhhh
Q 048511          284 QGKGNHRFVSGADEK-----VARVFEAPLSFLK  311 (351)
Q Consensus       284 ~~~~~~~l~s~~~dg-----~v~vw~~~~~~~~  311 (351)
                      .  ++.+++.|+.++     .+.+||+....-.
T Consensus       250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          250 V--NGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             E--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             E--CCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            3  578888888654     4788888744333

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=0.00021  Score=66.86  Aligned_cols=164  Identities=9%  Similarity=-0.086  Sum_probs=93.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-  195 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-  195 (351)
                      ...|++.+     ..+++      +++-...+.|.++++..  .. ...+..    ........++++|.+.+|+.+.. 
T Consensus       455 P~glavD~-----~~g~L------Y~tD~~~~~I~v~d~dg--~~-~~~l~~----~~~~~P~giavDp~~g~ly~td~~  516 (699)
T 1n7d_A          455 PDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VK-RKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG  516 (699)
T ss_dssp             CCCEECCC-----SSSBC------EECCTTTSCEEEEBSSS--CC-EEEECC----CSSCCCCCEECCSSSSCCEECCCS
T ss_pred             cceEEEEe-----eCCcE------EEEeccCCeEEEEecCC--Cc-eEEEEe----CCCCCcceEEEccCCCcEEEcccC
Confidence            34566663     34455      55555678899998875  22 222210    11223467889997666655543 


Q ss_pred             C-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEecccccc
Q 048511          196 G-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVH  273 (351)
Q Consensus       196 d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
                      . +.|..+++.....     ...+...-.....|+|+|++..| ++-+..+.|.++++.....        +.+......
T Consensus       517 ~~~~I~~~~~dG~~~-----~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--------~~~~~~~~~  583 (699)
T 1n7d_A          517 TPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--------KTILEDEKR  583 (699)
T ss_dssp             SSCCEEBCCSSSCCC-----CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--------EEECCCSSS
T ss_pred             CCCeEEEEeCCCCCe-----eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--------EEEEecCCc
Confidence            2 6788887765321     11111122346789999876554 4445678899999864331        122211111


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhcee
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTLN  314 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~~  314 (351)
                      ......|++..   +.++++....+.|..++. .++.+..+.
T Consensus       584 ~~~P~glavd~---~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          584 LAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CSSCCCCEEET---TEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             CCCceEeEEEC---CEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            12245666654   467777778889999986 466555553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.023  Score=50.38  Aligned_cols=243  Identities=11%  Similarity=0.032  Sum_probs=132.4

Q ss_pred             eeEEEeeCCcccCCCC-CccEEEEee-CCCcEEEEecCCCcccceeecc--cccceeeeEe-------eecCCeEEecCC
Q 048511           32 IRSLDFSLPVCTSGEA-ISILLVSSS-QDKVIRIWKLALRGSSANTQST--YRKEVISLAS-------YIEGPVLVAGSS  100 (351)
Q Consensus        32 V~~l~~~~~~~~~~~~-~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~l~~~~~  100 (351)
                      ...|+|.        | ++..|+.+. ..+.|++.|+..+.........  .......+++       ++++..|++++.
T Consensus       141 p~~la~d--------p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~  212 (496)
T 3kya_A          141 NGRLAFD--------PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID  212 (496)
T ss_dssp             EEEEEEE--------TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred             CCEEEEc--------cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence            4578888        5 344455444 3467888888765543322221  1235778889       999986665443


Q ss_pred             ce-------eEEEEEecc--ccc-----------cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEecc----
Q 048511          101 SY-------QVSVESLLI--GHE-----------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE----  156 (351)
Q Consensus       101 ~~-------~~~~~~~~~--~h~-----------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----  156 (351)
                      ..       .+..+..-.  ...           .....++++|     .++.+      +++-..++.|..+|+.    
T Consensus       213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp-----~~g~L------Yvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHP-----INGEL------YFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECT-----TTCCE------EEEETTTTEEEEECHHHHHH
T ss_pred             CCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcC-----CCCeE------EEEECCCCEEEEEecccccc
Confidence            32       122221111  000           1123455663     24555      6667778889999997    


Q ss_pred             ---CCCcce-----------EEE-EEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccCccccccccc
Q 048511          157 ---KTTGIW-----------MNV-VTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       157 ---~~~~~~-----------~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                         +  +..           ... +..    ......+.++|+|++++|+.+. ..+.|+.++....... +.....+.+
T Consensus       282 ~~~t--g~~~tp~~~~~~g~~~~l~~~----~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~-~~~~~~~aG  354 (496)
T 3kya_A          282 TIKN--GGSWDPIVKNNPNTFKQLFTI----ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE-FITPYNFVG  354 (496)
T ss_dssp             HHHT--TCCCCCBGGGCTTTEEEEEEC----SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-ECCCEEEEE
T ss_pred             cccC--ceeecccccccccccceeEec----CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce-ecccEEecC
Confidence               4  221           111 221    2233467899999999666554 5688988776442100 000011111


Q ss_pred             ---------------ccccEE-EEEee-------cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecc--------
Q 048511          221 ---------------HFAAVM-DISWS-------RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVAR--------  269 (351)
Q Consensus       221 ---------------~~~~v~-~v~~s-------p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------  269 (351)
                                     .-.... .++..       +++.++++=..+..|+.++. ++..     .++.-...        
T Consensus       355 ~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-----~TiaG~g~~~~~~~~~  428 (496)
T 3kya_A          355 GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-----STYAGRGASTSLADGN  428 (496)
T ss_dssp             BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-----EEEEESCTTHHHHHSC
T ss_pred             CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-----EEEecccccccccCcc
Confidence                           111244 44554       45666666667789999984 3321     11110000        


Q ss_pred             ----------ccccccceeEEEEeeeCC-CcEEEEecCCCeEEEEecCch
Q 048511          270 ----------PQVHGHDINCVTIIQGKG-NHRFVSGADEKVARVFEAPLS  308 (351)
Q Consensus       270 ----------~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~v~vw~~~~~  308 (351)
                                ..+.-.....|++.+  + +.++++=....+||.+++++.
T Consensus       429 ~~G~~dG~~~~~a~f~~P~gIavd~--~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          429 QWGTDDGDLREVARFRDVSGLVYDD--VKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             SCCCCCEETTTTCCCSSEEEEEEET--TTTEEEEEETTTTEEEEEEECCC
T ss_pred             ccccCCCCchhhhhcCCCcEEEEEC--CCCEEEEEeCCCCEEEEEECCCC
Confidence                      000112367889987  5 777787778889999998753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.008  Score=50.36  Aligned_cols=165  Identities=10%  Similarity=-0.068  Sum_probs=98.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEe
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHG  194 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~  194 (351)
                      .+..++|.+     .++.+      +++-...+.|..+++..  ......+..    ..-.....+++.+.+..| ++-.
T Consensus        36 ~~~~ld~d~-----~~~~l------yw~D~~~~~I~r~~~~g--~~~~~~~~~----~~l~~p~glavd~~~g~ly~~d~   98 (318)
T 3sov_A           36 DAAAVDFVF-----SHGLI------YWSDVSEEAIKRTEFNK--TESVQNVVV----SGLLSPDGLACDWLGEKLYWTDS   98 (318)
T ss_dssp             EEEEEEEEG-----GGTEE------EEEETTTTEEEEEETTS--SSCCCEEEE----ECCSCCCEEEEETTTTEEEEEET
T ss_pred             ccEEEEEEe-----CCCEE------EEEECCCCcEEEEEccC--CCceEEEEc----CCCCCccEEEEEcCCCeEEEEEC
Confidence            456788884     34555      66666678898888876  221111111    111235678888755544 4445


Q ss_pred             eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccccc
Q 048511          195 YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQV  272 (351)
Q Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                      ..+.|.++++.....     ...+.........+++.|.+..|+.+.  ..+.|...++.....        ..+..  .
T Consensus        99 ~~~~I~~~~~dG~~~-----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------~~~~~--~  163 (318)
T 3sov_A           99 ETNRIEVSNLDGSLR-----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------FIIIN--S  163 (318)
T ss_dssp             TTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--S
T ss_pred             CCCEEEEEECCCCcE-----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--------EEEEE--C
Confidence            668999999876421     111222334578999999766655544  357788888754321        11111  1


Q ss_pred             cccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                      .-...+.+++++ .++.++++=+..+.|..+++.+...+.+
T Consensus       164 ~l~~Pnglavd~-~~~~lY~aD~~~~~I~~~d~dG~~~~~~  203 (318)
T 3sov_A          164 EIYWPNGLTLDY-EEQKLYWADAKLNFIHKSNLDGTNRQAV  203 (318)
T ss_dssp             SCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCCccEEEEec-cCCEEEEEECCCCEEEEEcCCCCceEEE
Confidence            123368899997 2355556666788999999886555444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.70  E-value=0.016  Score=48.18  Aligned_cols=147  Identities=10%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  210 (351)
                      ++.|+.+     ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+..  
T Consensus       125 yv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--  195 (308)
T 1zgk_A          125 YAVGGSHGCIHHNSVERYEPER--DEWHLVAP---MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--  195 (308)
T ss_dssp             EEECCEETTEECCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred             EEEcCCCCCcccccEEEECCCC--CeEeECCC---CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--
Confidence            5555533     3578888887  55543222   1111112222233  56677777654     458899987754  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                       |..+..+......-..+.+  ++++++.|+.+     ..+.+||+.+.        .|..+..+...... .+++. - 
T Consensus       196 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p~~r~~-~~~~~-~-  261 (308)
T 1zgk_A          196 -WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE--------TWTFVAPMKHRRSA-LGITV-H-  261 (308)
T ss_dssp             -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--------EEEECCCCSSCCBS-CEEEE-E-
T ss_pred             -EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC--------cEEECCCCCCCccc-eEEEE-E-
Confidence             2333222222222222222  66777777664     46889998765        46666544322221 22222 2 


Q ss_pred             CCCcEEEEecCC-----CeEEEEecCchhhh
Q 048511          286 KGNHRFVSGADE-----KVARVFEAPLSFLK  311 (351)
Q Consensus       286 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~  311 (351)
                       ++.+++.|+.+     ..+.+||+....-.
T Consensus       262 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          262 -QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             -TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             -CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence             57888888754     35778887644333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.67  E-value=0.016  Score=48.27  Aligned_cols=138  Identities=7%  Similarity=0.060  Sum_probs=73.2

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-C-----CeEEEEEcccCcccCcccccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-G-----GAFHLWRNVGVDIDNWQPQKVPSGH  221 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d-----g~i~~~d~~~~~~~~~~~~~~~~~~  221 (351)
                      ..+.+||+.+  ..+...-.   .+........+.  .+++.++.|+. +     ..+.+||+.+..   |..+..+...
T Consensus       117 ~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~  186 (315)
T 4asc_A          117 DSVMCYDRLS--FKWGESDP---LPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE---WKELAPMQTA  186 (315)
T ss_dssp             CCEEEEETTT--TEEEECCC---CSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE---EEECCCCSSC
T ss_pred             ceEEEECCCC--CcEeECCC---CCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe---EEECCCCCCc
Confidence            4588888887  55543222   111111122222  35667777776 2     468899987754   3333332222


Q ss_pred             cccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          222 FAAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       222 ~~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      ...-..+.  -++++++.|+.++     .+.+||+.+.        .|..+..+....... +++. -  ++.+++.|+.
T Consensus       187 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~-~~~~-~--~~~l~v~GG~  252 (315)
T 4asc_A          187 RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDN--------KWAPFEAFPQERSSL-SLVS-L--VGTLYAIGGF  252 (315)
T ss_dssp             CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTT--------EEEEECCCSSCCBSC-EEEE-E--TTEEEEEEEE
T ss_pred             hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCC--------eEEECCCCCCcccce-eEEE-E--CCEEEEECCc
Confidence            11112222  2667777777654     5788888665        477665443222212 2222 2  5778888876


Q ss_pred             CC--------------eEEEEecCchh
Q 048511          297 EK--------------VARVFEAPLSF  309 (351)
Q Consensus       297 dg--------------~v~vw~~~~~~  309 (351)
                      ++              .+.+||+..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          253 ATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             cccCcCCccccccccCcEEEecCCCCh
Confidence            42              36778877443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=0.017  Score=50.60  Aligned_cols=218  Identities=10%  Similarity=0.078  Sum_probs=110.3

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CC---cEEEEecCCCcccceeeccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DK---VIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg---~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +.|+.+|.+. +....   +.........|+|+        +++++|+.+.. ++   ...+|-...+............
T Consensus       159 ~~I~~id~~~-~~v~~---~~~~~~~P~~ia~d--------~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~  226 (430)
T 3tc9_A          159 HPTRLIDFEK-EYVST---VYSGLSKVRTICWT--------HEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQ  226 (430)
T ss_dssp             EEEEEEETTT-TEEEE---EECCCSCEEEEEEC--------TTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECS
T ss_pred             CcEEEEECCC-CEEEE---EecCCCCcceEEEe--------CCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCC
Confidence            5677888876 54332   22234567899999        78886665543 22   1223333333222111111233


Q ss_pred             ceeeeEeee-cCCeEEecCCceeEEEEEe-------c--cccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeE
Q 048511           82 EVISLASYI-EGPVLVAGSSSYQVSVESL-------L--IGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTM  150 (351)
Q Consensus        82 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~-------~--~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i  150 (351)
                      ....+++.+ ++.++++......+..+..       +  .+.......++|+      ++++ +      +++-...+.|
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~------pdG~~l------yv~d~~~~~I  294 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH------PSGNYA------YIVVVNQHYI  294 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC------TTSSEE------EEEETTTTEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc------CCCCEE------EEEECCCCEE
Confidence            556778888 6666665444444433221       0  1111346789999      7887 4      5565677889


Q ss_pred             EEEeccCCCcce--EEEEEec-cccc---------cccceE-EEEEc--------CCCCEEEEEeeCCeEEEEEcccCcc
Q 048511          151 MIWQPEKTTGIW--MNVVTVG-ELSH---------SALGFY-GGHWS--------PDGRSILAHGYGGAFHLWRNVGVDI  209 (351)
Q Consensus       151 ~iwd~~~~~~~~--~~~~~~~-~~~~---------~~~~i~-~i~~~--------~~~~~l~~~~~dg~i~~~d~~~~~~  209 (351)
                      ..++.....+..  ...+.-. ...+         .-.... .++..        +++.++++-...+.|+.++... ..
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G-~v  373 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG-RV  373 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS-EE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC-cE
Confidence            998876421221  1111100 0000         001122 44443        3355555545567888887432 11


Q ss_pred             cCcccccc-----ccc----------ccccEEEEEeecC-CCEEEEEeCCCcEEEEcC
Q 048511          210 DNWQPQKV-----PSG----------HFAAVMDISWSRS-SDYLLSVSHDQTTRVFAP  251 (351)
Q Consensus       210 ~~~~~~~~-----~~~----------~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~  251 (351)
                         ..+.-     ..+          .-.....|+++|+ +.++++-..+..|+.+++
T Consensus       374 ---~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          374 ---TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             ---EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ---EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence               00000     001          1125788999994 555555555677887765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.58  E-value=0.0018  Score=61.25  Aligned_cols=116  Identities=9%  Similarity=-0.082  Sum_probs=72.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeec-CC----eEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DK----TMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~----~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      .+....|+|     |||++      ||.+.. +|    +|+++|+.+  + +.+.. .      .......++|+||++.
T Consensus       175 ~~~~~~~S~-----PDG~~------lAy~~~~~G~~~~~l~v~dl~~--g~~~l~~-~------~~~~~~~~~WspDg~~  234 (751)
T 2xe4_A          175 DVMEVKPAP-----PEHDL------VAFSVDMSGNEVYTIEFKRISD--PSQTIAD-K------VSGTNGEIVWGPDHTS  234 (751)
T ss_dssp             EEEEEEECT-----TTTCE------EEEEEESSSSSCEEEEEEETTC--TTCCCCC-C------EEEECSCCEECSSTTE
T ss_pred             EEeeeEecC-----CCCCE------EEEEEeCCCCceEEEEEEECCC--CCEeCCc-c------ccCceeeEEEecCCCE
Confidence            577889993     37776      665433 22    599999988  4 32110 0      0111346899999998


Q ss_pred             EEEEeeC-----CeEEEEEcccCcccCcccccccc-cccccEEEEEeecCCCEEEEEeC---CCcEEEEcCCCc
Q 048511          190 ILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPS-GHFAAVMDISWSRSSDYLLSVSH---DQTTRVFAPWKN  254 (351)
Q Consensus       190 l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~l~s~~~---dg~i~vwd~~~~  254 (351)
                      |+....+     ..|+++++.++..   .....+. ........+.|+|||++|+..+.   ...|+++|+.++
T Consensus       235 l~y~~~d~~~~~~~v~~~~lgt~~~---~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          235 LFYVTKDETLRENKVWRHVMGKLQS---EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEECTTCCEEEEEEEETTSCGG---GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEECCCCCCCEEEEEECCCCch---hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            8877765     3678888876531   1111111 12234567899999998876552   456888888765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.57  E-value=0.027  Score=53.27  Aligned_cols=169  Identities=10%  Similarity=-0.070  Sum_probs=99.6

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCc-ceEEEEEeccccccccceEEEEEcCCCCEEEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTG-IWMNVVTVGELSHSALGFYGGHWSPDGRSILA  192 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  192 (351)
                      ...+..|+|.+     .++.+      +++-...+.|+.+++..... .....+.    .........|++++.+..|+.
T Consensus       423 ~~~~~gl~~d~-----~~~~l------Y~sD~~~~~I~~~~l~g~~~~~~~~~vi----~~~l~~P~GLAvD~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEET-----TTTEE------EEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEeecc-----cCCee------EEeeccceeEEEEeccCCCCCcceeEEE----ecCCCCcceeeeeecCCcEEE
Confidence            34577889884     34555      66666678888888874211 0111111    112234567899887765555


Q ss_pred             E-eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC--CCcEEEEcCCCccccccCccceEEecc
Q 048511          193 H-GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--DQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       193 ~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      + ...+.|.+.++.....     ...+.........|++.|.+.+|+....  .+.|.+.++.....        ..+. 
T Consensus       488 tD~~~~~I~v~~ldG~~~-----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--------~~lv-  553 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKR-----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLV-  553 (791)
T ss_dssp             EETTTTEEEEEETTSSSE-----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--------EEEE-
T ss_pred             EecCCCeEEEEeCCCCeE-----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--------EEEE-
Confidence            4 4568999999976531     1112223345789999997666555442  26788888765431        1111 


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                       .......+.|++.+ .++.++++=.....|...++.|...+.+
T Consensus       554 -~~~l~~P~GLavD~-~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          554 -TENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             -CSSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -eCCCCCceEEEEec-CCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence             11223578899986 2455556656778899999887655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.44  E-value=0.038  Score=48.48  Aligned_cols=218  Identities=10%  Similarity=0.092  Sum_probs=110.4

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---Cc-EEEEecCCCcccceeeccccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---KV-IRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---g~-i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      +.|+.++..+ +...   .+.........|+++        ++++++++....   .. +...+.. .............
T Consensus       162 ~~I~~id~~~-g~v~---~~~~~~~~P~giavd--------~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~~~  228 (433)
T 4hw6_A          162 DAFRHVDFVN-QYVD---IKTTNIGQCADVNFT--------LNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCNAR  228 (433)
T ss_dssp             SCEEEEETTT-TEEE---EECCCCSCEEEEEEC--------TTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEEECS
T ss_pred             CCEEEEECCC-CEEE---EeecCCCCccEEEEC--------CCCCEEEEcCCCCcccceEEEEECC-CCeeccccccccC
Confidence            5677777766 5432   233334568899999        788855544311   12 2222222 1111101111123


Q ss_pred             ceeeeEeee-cCCeEEecCCceeEEEEEec----------cccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCe
Q 048511           82 EVISLASYI-EGPVLVAGSSSYQVSVESLL----------IGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKT  149 (351)
Q Consensus        82 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~  149 (351)
                      ....+++.+ ++.++++......+..+..-          .+....-..++|+      ++++ +      +++-...+.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d------pdG~~L------Yvad~~~~~  296 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH------PTGDWA------YIIYNGKHC  296 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC------TTSSEE------EEEETTTTE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe------CCCCEE------EEEeCCCCE
Confidence            456677888 55555554444433322211          0111223468999      6777 4      555566788


Q ss_pred             EEEEeccCCCcceE--EEEEec-ccc---------ccccceEEEEE---------cCCCCEEEEEeeCCeEEEEEcccCc
Q 048511          150 MMIWQPEKTTGIWM--NVVTVG-ELS---------HSALGFYGGHW---------SPDGRSILAHGYGGAFHLWRNVGVD  208 (351)
Q Consensus       150 i~iwd~~~~~~~~~--~~~~~~-~~~---------~~~~~i~~i~~---------~~~~~~l~~~~~dg~i~~~d~~~~~  208 (351)
                      |+.++.....+...  ..+.-. ...         ..-.....+++         .+++.++++-...+.|+.++... .
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G-~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG-R  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS-E
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC-C
Confidence            99988753212211  111100 000         01123567888         66777666666678899988532 1


Q ss_pred             ccCcccccc---------------cccccccEEEEEee-cCCCEEEEEeCCCcEEEEcCC
Q 048511          209 IDNWQPQKV---------------PSGHFAAVMDISWS-RSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       209 ~~~~~~~~~---------------~~~~~~~v~~v~~s-p~~~~l~s~~~dg~i~vwd~~  252 (351)
                      .   ..+.-               ....-.....|+++ +++.++++=..+..|+.++++
T Consensus       376 v---~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 V---TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             E---EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             E---EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            1   00000               00112346789999 566666655567788877653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.045  Score=46.37  Aligned_cols=145  Identities=8%  Similarity=0.047  Sum_probs=78.5

Q ss_pred             eEEeec--CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-----------------CCeEEE
Q 048511          141 ILSASM--DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-----------------GGAFHL  201 (351)
Q Consensus       141 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----------------dg~i~~  201 (351)
                      +++-..  +.+|.+|++....+.....-...  ...-.....+++.++|.+.++...                 .|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~--g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEEC--CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccc--cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            444333  56788888876323222111111  122345788999999987776541                 244544


Q ss_pred             EEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          202 WRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       202 ~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      +|.  ++      +..+...-...+.++|+||++.|+.+. ..+.|..|++.....    ....+.+ .   .....-.+
T Consensus       208 ~d~--~~------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~----l~~~~~~-~---~~g~PDGi  271 (355)
T 3sre_A          208 YSP--ND------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT----LTPLRVL-S---FDTLVDNI  271 (355)
T ss_dssp             ECT--TC------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC----EEEEEEE-E---CSSEEEEE
T ss_pred             EEC--Ce------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc----EecCEEE-e---CCCCCceE
Confidence            443  21      222222234568899999998876654 578999999864220    0011111 1   12345667


Q ss_pred             EEeeeCC-CcEEEEecCC-CeEEEEec
Q 048511          281 TIIQGKG-NHRFVSGADE-KVARVFEA  305 (351)
Q Consensus       281 ~~~~~~~-~~~l~s~~~d-g~v~vw~~  305 (351)
                      ++.+  + |++.+++..+ +.|..|+.
T Consensus       272 ~vD~--e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          272 SVDP--VTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EECT--TTCCEEEEEESCHHHHHSCCT
T ss_pred             EEeC--CCCcEEEEecCCceEEEEECC
Confidence            7765  4 6666655433 34444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.37  E-value=0.037  Score=45.87  Aligned_cols=96  Identities=6%  Similarity=0.028  Sum_probs=52.2

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccccccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHF  222 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~  222 (351)
                      ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+.+   |..+..+....
T Consensus       169 ~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r  238 (306)
T 3ii7_A          169 NSCEVYDPAT--ETWTELCP---MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE---WKMVSPMPWKG  238 (306)
T ss_dssp             CCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE---EEECCCCSCCB
T ss_pred             ceEEEeCCCC--CeEEECCC---ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc---EEECCCCCCCc
Confidence            4588899887  55544322   1111111222222  56677777654     468899987764   33333333222


Q ss_pred             ccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511          223 AAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV  255 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~  255 (351)
                      .....+.+  ++++++.|+.+     ..+.+||+.+.+
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            22222222  66777778754     468888887653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.36  E-value=0.051  Score=45.65  Aligned_cols=161  Identities=12%  Similarity=0.150  Sum_probs=93.4

Q ss_pred             CCeEEEEeccCCCcceEEEEEec--cccccccceEEEEE--cCC-CC-EEEEEeeCCeEEEEEcccCcc--cCccccccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVG--ELSHSALGFYGGHW--SPD-GR-SILAHGYGGAFHLWRNVGVDI--DNWQPQKVP  218 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~i~~i~~--~~~-~~-~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~  218 (351)
                      +++|.+|++....+. +..+.-.  .....-..++.+|+  +|. ++ ++++...+|.+..|++.....  ...+.++++
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            588999977422132 2222100  00011145677787  774 44 688888999999999943210  112445555


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccc--cccccceeEEEEeeeCCCc-EE-EEe
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGKGNH-RF-VSG  294 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~-~l-~s~  294 (351)
                      .. .+.+..+...+....|+.+-++..|..++.+....     ...+.+...  ......+..|++.+..++. +| +++
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-----~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-----SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-----SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-----CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            53 35788889999888999999987666666442210     011233222  1122358888886522333 44 455


Q ss_pred             cCCCeEEEEecC--chhhhcee
Q 048511          295 ADEKVARVFEAP--LSFLKTLN  314 (351)
Q Consensus       295 ~~dg~v~vw~~~--~~~~~~~~  314 (351)
                      -.+....|||..  .+.+.+|.
T Consensus       251 QG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          251 QGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             GGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCcEEEEEE
Confidence            477899999985  45555554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.34  E-value=0.051  Score=45.32  Aligned_cols=144  Identities=11%  Similarity=0.158  Sum_probs=75.2

Q ss_pred             eEEeecC-------CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccC
Q 048511          141 ILSASMD-------KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGV  207 (351)
Q Consensus       141 l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~  207 (351)
                      ++.|+.+       ..+.+||+.+  ..+...-.   .+........+.  .+++.++.|+.+      ..+.+||+.+.
T Consensus       113 yv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          113 YVVAGKDLQTEASLDSVLCYDPVA--AKWSEVKN---LPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EEEEEEBTTTCCEEEEEEEEETTT--TEEEEECC---CSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             EEEcCccCCCCcccceEEEEeCCC--CCEeECCC---CCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            6666653       3477888887  55554322   111111111222  366666777642      45889998775


Q ss_pred             cccCcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI  282 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (351)
                      .   |..+..+....... +++. -++++++.|+.+     ..+.+||+.+.        .|..+..+...... .+++.
T Consensus       186 ~---W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~-~~~~~  251 (318)
T 2woz_A          186 D---WKDLAPMKTPRSMF-GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN--------KWEVMTEFPQERSS-ISLVS  251 (318)
T ss_dssp             E---EEEECCCSSCCBSC-EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC--------CEEECCCCSSCCBS-CEEEE
T ss_pred             E---EEECCCCCCCcccc-eEEE-ECCEEEEEcCcCCCCccceEEEEECCCC--------eEEECCCCCCcccc-eEEEE
Confidence            4   23332222111111 2222 256777777643     35778888665        47666544322221 22222


Q ss_pred             eeeCCCcEEEEecCC--------------CeEEEEecCch
Q 048511          283 IQGKGNHRFVSGADE--------------KVARVFEAPLS  308 (351)
Q Consensus       283 ~~~~~~~~l~s~~~d--------------g~v~vw~~~~~  308 (351)
                       .  ++.+++.|+.+              ..+.+||+...
T Consensus       252 -~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          252 -L--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             -E--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             -E--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence             2  57788888754              34778887643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.29  E-value=0.11  Score=47.88  Aligned_cols=228  Identities=9%  Similarity=-0.061  Sum_probs=122.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEE-EeeCCCcEEEEecCCCcccceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLV-SSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ...|+..+++. .... ...+...-.....|+|+        +.+..|+ +=...+.|..+++........         
T Consensus        17 ~~~I~~i~~~~-~~~~-~~~~~~~~~~~~~ld~~--------~~~~~ly~sD~~~~~I~r~~~~g~~~~~~---------   77 (619)
T 3s94_A           17 RRDLRLVDATN-GKEN-ATIVVGGLEDAAAVDFV--------FSHGLIYWSDVSEEAIKRTEFNKTESVQN---------   77 (619)
T ss_dssp             SSBEEEECCC-----------CBCCSCEEEEEEE--------TTTTEEEEEETTTTEEEEEEC-----CEE---------
T ss_pred             cccEEEEeCCC-Ccce-EEEEEcCCCceEEEEEE--------eCCCEEEEEECCCCeEEEEEccCCCceEE---------
Confidence            45677777765 2111 11122234457788888        5444444 444456777777764321110         


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                               .+.........+++.+     ..+++      +++-...+.|.+.++..   ...
T Consensus        78 -------------------------v~~~~~~~P~GlAvD~-----~~~~l------y~~d~~~~~I~v~~~dG---~~~  118 (619)
T 3s94_A           78 -------------------------VVVSGLLSPDGLACDW-----LGEKL------YWTDSETNRIEVSNLDG---SLR  118 (619)
T ss_dssp             -------------------------EECSSCSCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS---CSC
T ss_pred             -------------------------EEeCCCCCcCeEEEEe-----cCCEE------EEEeCCCCEEEEEECCC---CCE
Confidence                                     0111123577888883     24555      66666778999999875   222


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-  240 (351)
                      ..+..    ..-.....|+++|.+..|+.+..  .+.|...++.....     .......-.....|++++++..|+.+ 
T Consensus       119 ~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-----~~l~~~~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          119 KVLFW----QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSEIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             EEEEC----SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEe----CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-----EEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence            22221    12234568999997666666553  36777777765421     11111223467899999976665544 


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                      ...+.|..+|+......        .+..  ........+++..   +.++++-...+.|...|.. ++....
T Consensus       190 ~~~~~I~~~~~dG~~~~--------~~~~--~~~~~P~gi~~~~---~~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          190 AKLNFIHKSNLDGTNRQ--------AVVK--GSLPHPFALTLFE---DILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             TTTCCEEEESSSCCEEC-------------------CCCEEESS---SEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCCCeEEEecCCCCccE--------EEEe--CCCCCceEEEEeC---CEEEEecCCCCEEEEEECCCCcccEE
Confidence            45678999998654310        1111  1112235667755   4666676678888888864 544433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.28  E-value=0.11  Score=47.88  Aligned_cols=226  Identities=8%  Similarity=-0.102  Sum_probs=132.6

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCC-ccEEEEeeCCCcEEEEecCCCcccceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAI-SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .+.|+..+++. ........+.+ -..+..|+|.        +. +.++++-..++.|..+++.........        
T Consensus        14 ~~~I~~i~l~~-~~~~~~~~~~~-~~~~~~l~~d--------~~~~~lywtD~~~~~I~r~~~~g~~~~~v~--------   75 (628)
T 4a0p_A           14 RADIRRISLET-NNNNVAIPLTG-VKEASALDFD--------VTDNRIYWTDISLKTISRAFMNGSALEHVV--------   75 (628)
T ss_dssp             TTEEEEEESSC-TTCEEECCCCS-CSCEEEEEEE--------TTTTEEEEEETTTTEEEEEETTSCSCEEEE--------
T ss_pred             CCcEEEEECCC-CCcceEEEcCC-CCceEEEEEE--------CCCCEEEEEECCCCeEEEEECCCCCcEEEE--------
Confidence            45678888876 43333222222 3467889999        54 444555556788888887643221100        


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                                 .........+++.+     ..+++      +++-...+.|.+.++..  .. .
T Consensus        76 ---------------------------~~g~~~P~GlAvD~-----~~~~L------Y~tD~~~~~I~v~~~dG--~~-~  114 (628)
T 4a0p_A           76 ---------------------------EFGLDYPEGMAVDW-----LGKNL------YWADTGTNRIEVSKLDG--QH-R  114 (628)
T ss_dssp             ---------------------------CSSCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--TT-C
T ss_pred             ---------------------------eCCCCCcceEEEEe-----CCCEE------EEEECCCCEEEEEecCC--Cc-E
Confidence                                       11112355677763     34455      66666678899988874  22 2


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-  240 (351)
                      ..+..    ..-.....++++|....|+.+..  .+.|...++.....      ..+...-.....|++++++..|+.+ 
T Consensus       115 ~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~~l~~~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          115 QVLVW----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------TTLVPNVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEEEC----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEe----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------EEEECCCCCcceEEEccccCEEEEEE
Confidence            22211    12234689999997666666553  56788888876532      2222234567899999976666555 


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec-Cchhhhce
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA-PLSFLKTL  313 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~-~~~~~~~~  313 (351)
                      ...+.|..+|+.....        +.+..   .......+++..   +.++++-...+.|...|. .++....+
T Consensus       185 ~~~~~I~~~d~dG~~~--------~v~~~---~l~~P~glav~~---~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          185 LDTNLIESSNMLGLNR--------EVIAD---DLPHPFGLTQYQ---DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TTTTEEEEEETTSCSC--------EEEEE---CCSCEEEEEEET---TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCCEEEEEcCCCCce--------EEeec---cCCCceEEEEEC---CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            4567899999865431        12211   112245777754   567777777888988884 35444444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.25  E-value=0.044  Score=46.52  Aligned_cols=139  Identities=9%  Similarity=0.060  Sum_probs=65.9

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee------CCeEEEEEc--ccCcccCcccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY------GGAFHLWRN--VGVDIDNWQPQKVPS  219 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------dg~i~~~d~--~~~~~~~~~~~~~~~  219 (351)
                      ..+.+||+.+  ..+...-.+.   .....-.+++. -+++.++.|+.      ...+..||+  .+..   |..+..+.
T Consensus       168 ~~v~~yd~~~--~~W~~~~~~p---~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~---W~~~~~~~  238 (357)
T 2uvk_A          168 KFLLSFDPST--QQWSYAGESP---WYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLK---WNKLAPVS  238 (357)
T ss_dssp             CEEEEEETTT--TEEEEEEECS---SCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CE---EEECCCSS
T ss_pred             ccEEEEeCCC--CcEEECCCCC---CCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCc---EEecCCCC
Confidence            5788999988  6665543211   11111012222 25666666664      345777876  4332   33333332


Q ss_pred             cccccEEEEEeecCCCEEEEEeCC----------------------CcEEEEcCCCccccccCccceEEeccccccccce
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHD----------------------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDI  277 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (351)
                      .........+...++++++.|+.+                      ..+.+||+.+.        .|..+..+...... 
T Consensus       239 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~-  309 (357)
T 2uvk_A          239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--------KWDKSGELSQGRAY-  309 (357)
T ss_dssp             TTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----------CEEEEECSSCCBS-
T ss_pred             CCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--------ceeeCCCCCCCccc-
Confidence            111111111223356677777632                      25778888755        46666544332222 


Q ss_pred             eEEEEeeeCCCcEEEEecCCC------eEEEEecCc
Q 048511          278 NCVTIIQGKGNHRFVSGADEK------VARVFEAPL  307 (351)
Q Consensus       278 ~~~~~~~~~~~~~l~s~~~dg------~v~vw~~~~  307 (351)
                       ..+...  ++.+++.|+.++      .|.+++++.
T Consensus       310 -~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          310 -GVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             -SEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred             -ceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence             222333  678888888543      244456663

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.09  E-value=0.092  Score=43.31  Aligned_cols=96  Identities=9%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcccCccccccccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDIDNWQPQKVPSGHF  222 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~  222 (351)
                      ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+.+   |..+..+....
T Consensus       173 ~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~r  242 (302)
T 2xn4_A          173 STVECYNATT--NEWTYIAE---MSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA---WRQVADMNMCR  242 (302)
T ss_dssp             CCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE---EEEECCCSSCC
T ss_pred             cEEEEEeCCC--CcEEECCC---CccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC---EeeCCCCCCcc
Confidence            3588889887  55554322   1111112222222  56777777764     468899987754   23332222111


Q ss_pred             ccEEEEEeecCCCEEEEEeCCC-----cEEEEcCCCcc
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQ-----TTRVFAPWKNV  255 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg-----~i~vwd~~~~~  255 (351)
                      .... ++ .-++++++.|+.++     .+.+||+.+..
T Consensus       243 ~~~~-~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          243 RNAG-VC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BSCE-EE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccCe-EE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1111 22 22667777777653     48899987653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.07  E-value=0.052  Score=44.80  Aligned_cols=103  Identities=12%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  210 (351)
                      ++.|+.+     ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+.+  
T Consensus       163 yv~GG~~~~~~~~~~~~~d~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--  233 (301)
T 2vpj_A          163 YCLGGYDGLNILNSVEKYDPHT--GHWTNVTP---MATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS--  233 (301)
T ss_dssp             EEECCBCSSCBCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--
T ss_pred             EEECCCCCCcccceEEEEeCCC--CcEEeCCC---CCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc--
Confidence            6666543     4588889887  55544321   1111112222332  56777777764     468999998764  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV  255 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~  255 (351)
                       |..+..+.........+.  -++++++.|+.+     ..+.+||+.+.+
T Consensus       234 -W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          234 -WTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             -EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             -EEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             233332222211112222  266777777765     457888886653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.06  E-value=0.29  Score=48.55  Aligned_cols=64  Identities=14%  Similarity=0.025  Sum_probs=42.5

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCccc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSS   72 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~   72 (351)
                      ++.|.+++++. +++..+.... -...|.|+++.+.....  ..+++++.|.. |++|+|+++.+.+.+
T Consensus       531 g~~l~~fel~~-~~L~~~~~~~-l~~evscl~i~~~~~~~--~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          531 GRALYYLQIHP-QELRQISHTE-MEHEVACLDITPLGDSN--GLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             TTEEEEEEEET-TEEEEEEEEE-CSSCEEEEECCCCSSST--TCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCEEEEEEeeC-CceeeecccC-CCCceEEEEeecCCCCc--ccccEEEEEECCCCEEEEEECCCCCeE
Confidence            45677777776 5554443332 35689999998321111  34579999997 999999999865443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.03  E-value=0.075  Score=45.77  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeecc---cccceeeeEeeecCCeEEecCCceeE--------------------
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQST---YRKEVISLASYIEGPVLVAGSSSYQV--------------------  104 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------  104 (351)
                      ++..++.+- ++.||.=++.....-+.+...   ....+..+..+|+|.+|++.+...-.                    
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            454555443 467877777744333333332   12356789999999999985432211                    


Q ss_pred             EEEE-ecc----ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec----cccccc
Q 048511          105 SVES-LLI----GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG----ELSHSA  175 (351)
Q Consensus       105 ~~~~-~~~----~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~  175 (351)
                      ++.. .+.    ....+|..+.|+|.+   ..+..      |++-..|+.|++||+........ .+...    ......
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~---~~ds~------LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKS---YRDSC------IVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV  179 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTB---GGGCE------EEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred             ceeEEEcCCcccCCCCceeEEEecccc---CCCCe------EEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence            1101 010    024679999999866   44556      99999999999999986322222 22100    112233


Q ss_pred             cceEEEEEcCCCCEEEEEe--eCCeEEEE
Q 048511          176 LGFYGGHWSPDGRSILAHG--YGGAFHLW  202 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~--~dg~i~~~  202 (351)
                      ..|.+++|.+++-.|++.+  .+|.|+-.
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            6789999999887777655  77887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.048  Score=48.35  Aligned_cols=170  Identities=2%  Similarity=-0.044  Sum_probs=95.0

Q ss_pred             ceEEEEecCCCCCCCC-CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE-------cCCC
Q 048511          116 WVYSVQWEPPSTAPSD-GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW-------SPDG  187 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-------~~~~  187 (351)
                      ....|+|.|     .+ +++      +++-...+.|++.|+..  +..........  ........++|       ++++
T Consensus       140 ~p~~la~dp-----~~~~~L------yv~~~~~~~i~~ID~~~--~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G  204 (496)
T 3kya_A          140 DNGRLAFDP-----LNKDHL------YICYDGHKAIQLIDLKN--RMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEA  204 (496)
T ss_dssp             SEEEEEEET-----TEEEEE------EEEEETEEEEEEEETTT--TEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTT
T ss_pred             CCCEEEEcc-----CCCCEE------EEEECCCCeEEEEECCC--CEEEEEEccCc--cccCCCcEEEEeecccccCCCC
Confidence            356788884     12 333      44444446788888886  44443332111  12235789999       9999


Q ss_pred             CEEEEEeeCC-------eEEEEEccc-CcccCccc-c--cccccccccEEEEEeecC-CCEEEEEeCCCcEEEEcCC---
Q 048511          188 RSILAHGYGG-------AFHLWRNVG-VDIDNWQP-Q--KVPSGHFAAVMDISWSRS-SDYLLSVSHDQTTRVFAPW---  252 (351)
Q Consensus       188 ~~l~~~~~dg-------~i~~~d~~~-~~~~~~~~-~--~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~i~vwd~~---  252 (351)
                      ..|+++...+       .|.+++... +.   +.. .  ..+.. ......++++|+ +.++++-..++.|..+|+.   
T Consensus       205 ~~lyvad~~~~~~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~  280 (496)
T 3kya_A          205 EYMIVAIDYDGKGDESPSVYIIKRNADGT---FDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF  280 (496)
T ss_dssp             CEEEEEECCCTTGGGEEEEEEEECCTTSC---CSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred             CEEEEEeCCCCCcccCceEEEEecCCCCc---eeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence            9777776554       255665333 11   110 0  11111 123456788994 5555566678889999987   


Q ss_pred             ----Cccc-cc---cCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEecCc
Q 048511          253 ----KNVA-SL---MGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEAPL  307 (351)
Q Consensus       253 ----~~~~-~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~~~  307 (351)
                          ++.. .+   ........+... ........++|+|  ++. ++++-....+|+.++..+
T Consensus       281 ~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          281 KTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             HHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccCceeecccccccccccceeEec-CCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence                4431 00   000001122111 1223467899999  887 466667788999977654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.89  E-value=0.16  Score=42.72  Aligned_cols=106  Identities=8%  Similarity=0.042  Sum_probs=68.3

Q ss_pred             eEEeecCCeEEEEeccCC-----CcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccc
Q 048511          141 ILSASMDKTMMIWQPEKT-----TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ  215 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  215 (351)
                      +++...+|.+..|++...     +.+.+.++.+      ...+..+...+....|+.+-.+..|..|+.+.......+.+
T Consensus       146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v  219 (355)
T 3amr_A          146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVI  219 (355)
T ss_dssp             EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEE
T ss_pred             EEEECCCCeEEEEEEEeCCCCcccceEEEEecC------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEE
Confidence            777778899999998531     1344555543      24678889999889999999997777777542211001223


Q ss_pred             cccc-cc-cccEEEEEe--ecCCC-EEEEEe-CCCcEEEEcCC
Q 048511          216 KVPS-GH-FAAVMDISW--SRSSD-YLLSVS-HDQTTRVFAPW  252 (351)
Q Consensus       216 ~~~~-~~-~~~v~~v~~--sp~~~-~l~s~~-~dg~i~vwd~~  252 (351)
                      ..+. ++ ...+..|++  .++++ +|++++ .+.+..+||.+
T Consensus       220 ~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          220 DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            2221 12 235777877  45555 666555 57799999996

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.82  E-value=0.3  Score=44.99  Aligned_cols=164  Identities=9%  Similarity=-0.076  Sum_probs=98.9

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE-
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH-  193 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-  193 (351)
                      ..+..++|.+     .++.+      +++-..++.|..+++..  ......+.     ........+++++.+..|+.+ 
T Consensus        37 ~~~~~l~~d~-----~~~~l------ywtD~~~~~I~r~~~~g--~~~~~v~~-----~g~~~P~GlAvD~~~~~LY~tD   98 (628)
T 4a0p_A           37 KEASALDFDV-----TDNRI------YWTDISLKTISRAFMNG--SALEHVVE-----FGLDYPEGMAVDWLGKNLYWAD   98 (628)
T ss_dssp             SCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CSCEEEEC-----SSCSCCCEEEEETTTTEEEEEE
T ss_pred             CceEEEEEEC-----CCCEE------EEEECCCCeEEEEECCC--CCcEEEEe-----CCCCCcceEEEEeCCCEEEEEE
Confidence            4577899995     45555      66666788898888875  22222121     111245678888766655544 


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEecccc
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ...+.|.+.++.....     ...+...-....+|++.|....|+...  ..+.|...++.....        ..+..  
T Consensus        99 ~~~~~I~v~~~dG~~~-----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--------~~l~~--  163 (628)
T 4a0p_A           99 TGTNRIEVSKLDGQHR-----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--------TTLVP--  163 (628)
T ss_dssp             TTTTEEEEEETTSTTC-----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------EEEEC--
T ss_pred             CCCCEEEEEecCCCcE-----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--------EEEEC--
Confidence            4568899999876421     111112334578999999655555444  256777777754431        12211  


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                       .......+++++ .++.++++-...+.|...++.+...+.+
T Consensus       164 -~~~~P~GlalD~-~~~~LY~aD~~~~~I~~~d~dG~~~~v~  203 (628)
T 4a0p_A          164 -NVGRANGLTIDY-AKRRLYWTDLDTNLIESSNMLGLNREVI  203 (628)
T ss_dssp             -SCSSEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -CCCCcceEEEcc-ccCEEEEEECCCCEEEEEcCCCCceEEe
Confidence             223478899988 2345555656778999999886544433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.77  E-value=0.18  Score=41.71  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             eEEeecC-----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCccc
Q 048511          141 ILSASMD-----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~  210 (351)
                      ++.|+.+     ..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+.+  
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~--  242 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPER--NEWRMITA---MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET--  242 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--
T ss_pred             EEEeCCCCCCcCceEEEEeCCC--CeEeeCCC---CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc--
Confidence            5555543     4588888887  55543221   1111122222333  66777777654     568999988764  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCC-----CcEEEEcCCCcc
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-----QTTRVFAPWKNV  255 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-----g~i~vwd~~~~~  255 (351)
                       |..+..+........ ++. -++++++.|+.+     ..+.+||+.+.+
T Consensus       243 -W~~~~~~p~~r~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          243 -WTFVAPMKHRRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             -EEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             -EEECCCCCCCccceE-EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence             333333322221212 222 256777777754     357888886653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.69  E-value=0.11  Score=44.69  Aligned_cols=152  Identities=7%  Similarity=-0.003  Sum_probs=89.7

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCc-----cc-
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNW-----QP-  214 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-----~~-  214 (351)
                      ++.+ .++.||.-++..  ...-+.+..... ..-..|..+..+|+|++||..+ +..|.|..+..+.....     .. 
T Consensus        35 i~~a-~~n~iR~~~i~~--~~~Yk~L~~~~~-i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           35 IVFI-QDNIIRWYNVLT--DSLYHSLNFSRH-LVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             EEEE-ETTEEEEEETTT--CSSCEEEECTTT-CCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             EEEE-ECCEEEEEECCC--CCcceEEecCcc-cccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            4444 457888888875  222223332100 0122578899999999998875 45788988863321100     00 


Q ss_pred             -ccccc------cccccEEEEEeecC---CCEEEEEeCCCcEEEEcCCCccccccCccceEEe-c--cccccccceeEEE
Q 048511          215 -QKVPS------GHFAAVMDISWSRS---SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEV-A--RPQVHGHDINCVT  281 (351)
Q Consensus       215 -~~~~~------~~~~~v~~v~~sp~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~~~~  281 (351)
                       .+.+.      ....+|..+.|+|-   +..|++-..|+.|++||+......+.   .+... .  .+......|.+++
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCEEEEE
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chhccccccCCCcccceEEEEE
Confidence             01111      12567999999994   46789999999999999987332110   11100 0  1112225688999


Q ss_pred             EeeeCCCcEEEE--ecCCCeEEE
Q 048511          282 IIQGKGNHRFVS--GADEKVARV  302 (351)
Q Consensus       282 ~~~~~~~~~l~s--~~~dg~v~v  302 (351)
                      |..  ++-.|..  ....|-|+-
T Consensus       187 Fg~--~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          187 FSK--DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ECT--TSSCEEEEECTTSCEEEE
T ss_pred             EcC--CCcEEEEEecCCCCCEEE
Confidence            988  6665555  557787764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.60  E-value=0.0049  Score=57.69  Aligned_cols=167  Identities=9%  Similarity=-0.090  Sum_probs=90.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEeccccccccceEEEEEcCCCC-EEEEE
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELSHSALGFYGGHWSPDGR-SILAH  193 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~  193 (351)
                      .+..++|.+     ..+.+      +++-...+.|+.+++.... +.....+.    .........+++.+.+. ++++-
T Consensus       407 ~p~gla~d~-----~~~~L------y~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~~~~P~glavD~~~g~LY~tD  471 (699)
T 1n7d_A          407 NVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWTD  471 (699)
T ss_dssp             TCCCCEEET-----TTTEE------EECCTTTTSBEEEESCCCCC-CCCCCBC----CSCC--CCCEECCCSSSBCEECC
T ss_pred             ceEEEcccc-----ccCeE------EEEecCCCeEEEEecCCCCCCcceEEEE----eCCCCCcceEEEEeeCCcEEEEe
Confidence            355677773     23343      4444456788888876410 00000000    01111245678876444 44444


Q ss_pred             eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C-CcEEEEcCCCccccccCccceEEecccc
Q 048511          194 GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D-QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      ...+.|.++++.....     ...+.........|++.|.+.+|+.+.. . +.|.++++.....        ..+..  
T Consensus       472 ~~~~~I~v~d~dg~~~-----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--------~~l~~--  536 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKR-----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLVT--  536 (699)
T ss_dssp             TTTSCEEEEBSSSCCE-----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--------CEESC--
T ss_pred             ccCCeEEEEecCCCce-----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--------eEEEe--
Confidence            4568899999876421     1111212234577899986555544432 2 6788887754321        11111  


Q ss_pred             ccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          272 VHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                      ......+.|+|++ .++.++++-+..+.|.++++.+...+.+
T Consensus       537 ~~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~~~~  577 (699)
T 1n7d_A          537 ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNRKTI  577 (699)
T ss_dssp             SSCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCCEEE
T ss_pred             CCCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCceEEE
Confidence            1123367899997 2356666777788999999876544433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.55  E-value=0.22  Score=41.35  Aligned_cols=103  Identities=14%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             eEEeec------CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC-----eEEEEEcccCcc
Q 048511          141 ILSASM------DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG-----AFHLWRNVGVDI  209 (351)
Q Consensus       141 l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~  209 (351)
                      ++.|+.      -..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.++     .+.+||+.+.+ 
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-  223 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKK--FEWKELAP---MQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-  223 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTT--TEEEECCC---CSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-
T ss_pred             EEEeCCCCCCcccceEEEEeCCC--CeEEECCC---CCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-
Confidence            566655      24688889887  55544222   1111111222222  667777777654     58888887754 


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCC--------------CcEEEEcCCCcc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------------QTTRVFAPWKNV  255 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------------g~i~vwd~~~~~  255 (351)
                        |..+..+.........+.  -++++++.|+.+              ..+.+||+.+.+
T Consensus       224 --W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          224 --WAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             --EEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             --EEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence              333333222222212222  256677777653              246778876653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.50  E-value=0.23  Score=42.06  Aligned_cols=144  Identities=12%  Similarity=0.049  Sum_probs=81.5

Q ss_pred             cCCeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcC--CCC-EEEEEe-e--CCeEEEEEcccCcccCcccccc
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSP--DGR-SILAHG-Y--GGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~--~~~-~l~~~~-~--dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                      .+|.|.++|+.+..... ..+.+..  ..........+.+.+  ++. +|+++. .  +.+|.+|++..... ....+..
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~  158 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKT  158 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEec
Confidence            68999999998532332 2333222  122234566677655  453 444443 3  46888888865321 1123334


Q ss_pred             cccc-cccEEEEEeecCCCEEEEEeC-----------------CCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          218 PSGH-FAAVMDISWSRSSDYLLSVSH-----------------DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       218 ~~~~-~~~v~~v~~sp~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                      +.+. -...+.+.+.++|.++++...                 .|.|.-+|..  +.        +.+.   ..-...+.
T Consensus       159 ~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~--------~~~~---~~l~~pNG  225 (355)
T 3sre_A          159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV--------RVVA---EGFDFANG  225 (355)
T ss_dssp             ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC--------EEEE---EEESSEEE
T ss_pred             cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE--------EEee---cCCcccCc
Confidence            4332 235789999999987776541                 2445555542  20        1111   11123688


Q ss_pred             EEEeeeCCCcEE-EEecCCCeEEEEecC
Q 048511          280 VTIIQGKGNHRF-VSGADEKVARVFEAP  306 (351)
Q Consensus       280 ~~~~~~~~~~~l-~s~~~dg~v~vw~~~  306 (351)
                      ++|+|  |++.| ++-+..+.|..|++.
T Consensus       226 ia~sp--Dg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          226 INISP--DGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEECT--TSSEEEEEEGGGTEEEEEEEC
T ss_pred             ceECC--CCCEEEEEeCCCCeEEEEEEC
Confidence            99999  77655 455577899999975

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.49  E-value=0.26  Score=46.10  Aligned_cols=113  Identities=11%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             eEEeecCC--eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEee--C-----CeEEEEEcccCcc-
Q 048511          141 ILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGY--G-----GAFHLWRNVGVDI-  209 (351)
Q Consensus       141 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~--d-----g~i~~~d~~~~~~-  209 (351)
                      ++.|+.++  .+.+||+.+  ..+...-..............+.+..+ ++.++.|+.  +     ..+.+||+.+..- 
T Consensus       504 yv~GG~~~~~~v~~yd~~t--~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~  581 (695)
T 2zwa_A          504 LILGGVTEGPAMLLYNVTE--EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT  581 (695)
T ss_dssp             EEECCBCSSCSEEEEETTT--TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSS
T ss_pred             EEECCCCCCCCEEEEECCC--CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccc
Confidence            77777654  689999988  666543221111112222233555555 667777765  2     4688999987641 


Q ss_pred             --cCcccccccccccccEEEEEeecCCCEEEEEeC--------CCcEEEEcCCCcc
Q 048511          210 --DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH--------DQTTRVFAPWKNV  255 (351)
Q Consensus       210 --~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~--------dg~i~vwd~~~~~  255 (351)
                        ..|..+.........-.+++...++++++.|+.        ...+.+||+.+..
T Consensus       582 ~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             CCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             cceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence              001111111001111112333333677777774        3468999987664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.12  E-value=0.13  Score=40.06  Aligned_cols=144  Identities=10%  Similarity=0.000  Sum_probs=80.1

Q ss_pred             eEEeecCCeEEEEeccCCCc-ceE-EEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          141 ILSASMDKTMMIWQPEKTTG-IWM-NVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      |.....| +++.=....... .+. ...++...  .-..+..++|+|++.+.++  .+|.++-.+..+....      ..
T Consensus         7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~--gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~------~W   75 (236)
T 1tl2_A            7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGKG--GWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND------NW   75 (236)
T ss_dssp             EEEEETT-EEEEESCCCSTTCCHHHHSEEEESS--SCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC------CH
T ss_pred             EEEEeCC-cEEecCCCCCcccchhhhccccCcc--ccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc------cc
Confidence            7777777 655544444111 010 11121110  0235779999998886666  7887666665443211      11


Q ss_pred             ccccccE--------EEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccc--cccceeEEEEeeeCCC
Q 048511          219 SGHFAAV--------MDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV--HGHDINCVTIIQGKGN  288 (351)
Q Consensus       219 ~~~~~~v--------~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~  288 (351)
                      .+....|        .++.|.|+|.+.++  .||.|+-++..+..     ...|.--....+  -=..+..|.+.|  +|
T Consensus        76 ~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~-----~~~Wl~~a~~vg~~gw~~~~~lff~p--~G  146 (236)
T 1tl2_A           76 MGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD-----TDNWIARATEVGSGGWSGFKFLFFHP--NG  146 (236)
T ss_dssp             HHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST-----TCCHHHHSEEEECSSGGGEEEEEECT--TS
T ss_pred             cccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC-----CCceeccccEeccCCCCceEEEEECC--Cc
Confidence            1112233        78899999987777  56999888864433     123311111100  113478999999  88


Q ss_pred             cEEEEecCCCeEEEEecC
Q 048511          289 HRFVSGADEKVARVFEAP  306 (351)
Q Consensus       289 ~~l~s~~~dg~v~vw~~~  306 (351)
                      .+.+..  |+.++-+..+
T Consensus       147 ~Lyav~--dg~lyr~~~P  162 (236)
T 1tl2_A          147 YLYAVH--GQQFYKALPP  162 (236)
T ss_dssp             CEEEEE--TTEEEEECCC
T ss_pred             eEEEEe--CCcEEecCCC
Confidence            777776  7775444433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.12  E-value=1.2  Score=44.10  Aligned_cols=142  Identities=14%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             eEEee----------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc
Q 048511          141 ILSAS----------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  210 (351)
                      |+.|.          ..|.|++|++..  ++.. .+..   ....+.+++++-- +| +|++ +....|++|++...+  
T Consensus       847 lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~-lv~~---~~v~g~v~al~~~-~g-~Lla-~ig~~l~vy~l~~~~--  915 (1158)
T 3ei3_A          847 FIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQ-TVAE---KEVKGAVYSMVEF-NG-KLLA-SINSTVRLYEWTTEK--  915 (1158)
T ss_dssp             EEEEEEECCTTCSSCCCEEEEEEEEET--TEEE-EEEE---EEESSCEEEEEEE-TT-EEEE-EETTEEEEEEECTTS--
T ss_pred             EEEEeeecCCCCCCCCceEEEEEEEEC--CEEE-EEEE---EEcCCcCEEEeee-CC-EEEE-EcCCEEEEEECCCCc--
Confidence            77775          347899999974  3222 1111   1235678887643 34 4443 346889999997642  


Q ss_pred             CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcE
Q 048511          211 NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHR  290 (351)
Q Consensus       211 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  290 (351)
                         .+..-..+-..|..+.....+.+++.|..-..|.++..+...      ..+..+.+- .....++++.+..   ...
T Consensus       916 ---~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~------~~L~~~a~D-~~~~~vta~~~ld---~~t  982 (1158)
T 3ei3_A          916 ---ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME------GNFEEIARD-FNPNWMSAVEILD---DDN  982 (1158)
T ss_dssp             ---CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT------TEEEEEEEC-CSCBCEEEEEEEE---TTE
T ss_pred             ---eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC------CeEEEEEee-cccccEEEEEEEc---cCc
Confidence               122100111123333333457789999888888777654332      233444433 3345688999886   457


Q ss_pred             EEEecCCCeEEEEecC
Q 048511          291 FVSGADEKVARVFEAP  306 (351)
Q Consensus       291 l~s~~~dg~v~vw~~~  306 (351)
                      ++.+..+|.+.+...+
T Consensus       983 ~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          983 FLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EEEEETTSEEEEEEEC
T ss_pred             EEEEcCCCcEEEEecC
Confidence            8889999999998765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.81  E-value=0.84  Score=39.56  Aligned_cols=223  Identities=9%  Similarity=-0.023  Sum_probs=127.0

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YR   80 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~   80 (351)
                      ..++.|||+++ +  ..+..+.- ...|.-=.|.         +.+.|+-.+ +..|.-|++............    ..
T Consensus        85 g~~lQiFnle~-K--~klks~~~-~e~VvfWkWi---------s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~  150 (494)
T 1bpo_A           85 GKTLQIFNIEM-K--SKMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (494)
T ss_dssp             TTEEEEEETTT-T--EEEEEEEC-SSCCCEEEEE---------ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTT
T ss_pred             CCeEEEEchHH-h--hhhcceec-CCCceEEEec---------CCCeEEEEc-CCeeEEecccCCCCchhheecchhccc
Confidence            46789999998 5  23333332 3456667776         234555554 457999999754333222211    14


Q ss_pred             cceeeeEeeecCCeEEecC-------CceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           81 KEVISLASYIEGPVLVAGS-------SSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~-------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ..+.....+++.+.++..+       -.+.+.+.       +.+.||...-..+...-+.   ....+      ++-+..
T Consensus       151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~---~~~~l------f~fa~r  221 (494)
T 1bpo_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVR  221 (494)
T ss_dssp             CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCS---SEEEE------EEEEEC
T ss_pred             ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCC---CCceE------EEEEEe
Confidence            5566666777777666532       12333332       3466776555444443111   11222      444444


Q ss_pred             C---CeEEEEeccCC-Ccce---EEEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          147 D---KTMMIWQPEKT-TGIW---MNVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       147 d---~~i~iwd~~~~-~~~~---~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      .   +.++|-++... .+..   .+...+... ........++..++....++.-+.-|.|++||++++     .++..-
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-----t~i~~n  296 (494)
T 1bpo_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMN  296 (494)
T ss_dssp             STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEEE
T ss_pred             cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-----eeeeee
Confidence            2   78999998642 1111   112222111 223445567888888889999999999999999998     455554


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +-....|..-+......=++.....|.|.--.+....
T Consensus       297 rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            4455566555555544445555577777666655443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.77  E-value=0.16  Score=43.07  Aligned_cols=110  Identities=11%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc---ccccccccEEEEEeecC---CCEEEEE-eCC-----C
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK---VPSGHFAAVMDISWSRS---SDYLLSV-SHD-----Q  244 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~v~~v~~sp~---~~~l~s~-~~d-----g  244 (351)
                      ....++|.|+|+ |+++..++.|++++  .++.   ..+.   ...........|+|+|+   +..|+.+ ..+     .
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~---~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRL---STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETTTEEEEEE--TTEE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCc---cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            467899999998 45556679999998  3321   1111   11122456789999998   4454443 322     6


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      .|..|+........ ....+..+.......+....++|.|  ++.++++-+
T Consensus       106 ~v~r~~~~~~~~~~-~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVL-DRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEE-EEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECC
T ss_pred             EEEEEEeCCCCcCc-eEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEEC
Confidence            78888876432100 0001111111011122357899999  888777754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.52  E-value=0.64  Score=36.21  Aligned_cols=143  Identities=15%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEecc-------ccccce--------EEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLI-------GHEDWV--------YSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~h~~~v--------~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ....++|+|+|.+.++  ..+.+.......       +-...|        .++.|.      +++.+      .++  .
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD------~~G~L------Yav--~  105 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD------PNGYL------YAV--S  105 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC------TTSCE------EEE--E
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC------CCCCE------EEe--C
Confidence            5668999999998777  444333222211       111223        577888      67776      665  6


Q ss_pred             CCeEEEEeccCC-CcceEEE-EEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc--ccc
Q 048511          147 DKTMMIWQPEKT-TGIWMNV-VTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS--GHF  222 (351)
Q Consensus       147 d~~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--~~~  222 (351)
                      ||.|.-++..+. ...++.. -.+.  ..--..+..+.+.|+|.+.++.  |+.++-....+.....+....+..  ..-
T Consensus       106 dG~iyr~~pP~~~~~~Wl~~a~~vg--~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~  181 (236)
T 1tl2_A          106 KDKLYKASPPQSDTDNWIARATEVG--SGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW  181 (236)
T ss_dssp             TTEEEEESCCCSTTCCHHHHSEEEE--CSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG
T ss_pred             CCEEEEeCCCcCCCCceeccccEec--cCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc
Confidence            799887776431 1112111 0100  0122457899999999977766  777543322211110010011111  112


Q ss_pred             ccEEEEEeecCCCEEEEEeCCCcE
Q 048511          223 AAVMDISWSRSSDYLLSVSHDQTT  246 (351)
Q Consensus       223 ~~v~~v~~sp~~~~l~s~~~dg~i  246 (351)
                      ...+-+.|.+++.+.+..  ++.+
T Consensus       182 ~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          182 DTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             GGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ceEEEEEECCCCcEEEEe--CCeE
Confidence            234456789998876655  6633

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.39  E-value=1.6  Score=40.08  Aligned_cols=155  Identities=5%  Similarity=-0.102  Sum_probs=88.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                      ....+++.+     ..+++      +++-+..+.|.+.++..   .....+..    ..-.....++++|....|+.+..
T Consensus       393 ~p~GlAvD~-----~~~~l------Y~tD~~~~~I~v~~~~G---~~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~  454 (619)
T 3s94_A          393 HPDGIAVDW-----VARNL------YWTDTGTDRIEVTRLNG---TMRKILIS----EDLEEPRAIVLDPMVGYMYWTDW  454 (619)
T ss_dssp             CCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS---CSCEEEEC----TTCCSEEEEEEETTTTEEEEEEC
T ss_pred             CcCceEEec-----ccCcE------EEEeCCCCcEEEEeCCC---CeEEEEEE----CCCCCeeeEEEEcCCCcEEEecC
Confidence            455677763     24555      66666678898888875   22222221    22345789999997555555543


Q ss_pred             --CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEeccccc
Q 048511          196 --GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVARPQV  272 (351)
Q Consensus       196 --dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  272 (351)
                        ...|...++.....     .......-...+.|++++++..|+.+. ..+.|..+++.....     +.  .+.....
T Consensus       455 g~~~~I~r~~~dG~~~-----~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-----~~--~~~~~l~  522 (619)
T 3s94_A          455 GEIPKIERAALDGSDR-----VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-----RV--LVEDKIP  522 (619)
T ss_dssp             SSSCEEEEEETTSCSC-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----EE--EEECCCC
T ss_pred             CCCCEEEEEccCCCcc-----EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-----EE--EeccCCC
Confidence              36777777765421     111122335678999998766666554 457888888854431     11  1111111


Q ss_pred             cccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          273 HGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       273 ~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |   ...+++..   +.++++-...+.|...+..
T Consensus       523 ~---P~glav~~---~~ly~tD~~~~~I~~~~k~  550 (619)
T 3s94_A          523 H---IFGFTLLG---DYVYWTDWQRRSIERVHKR  550 (619)
T ss_dssp             S---SCCEEEET---TEEEEECTTSSCEEEEESS
T ss_pred             C---cEEEEEEC---CEEEEeecCCCeEEEEEcC
Confidence            2   34566654   4566666666666666643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.39  E-value=1.3  Score=38.94  Aligned_cols=114  Identities=13%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecccc---ccccceEEEEEcCC---CC
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS---HSALGFYGGHWSPD---GR  188 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~---~~  188 (351)
                      ...+.|+|.      +++++      +++-...+.|++++...  +.......+....   ........|+|+|+   +.
T Consensus        27 ~~P~~~a~~------pdG~l------~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           27 NKPHALLWG------PDNQI------WLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             SSEEEEEEC------TTSCE------EEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             CCceEEEEc------CCCcE------EEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            356799999      78876      66654445788887654  3322222222111   12456789999996   55


Q ss_pred             EEEEEee-------------CCeEEEEEcccCc--ccCccccc-ccc-cccccEEEEEeecCCCEEEEEeC
Q 048511          189 SILAHGY-------------GGAFHLWRNVGVD--IDNWQPQK-VPS-GHFAAVMDISWSRSSDYLLSVSH  242 (351)
Q Consensus       189 ~l~~~~~-------------dg~i~~~d~~~~~--~~~~~~~~-~~~-~~~~~v~~v~~sp~~~~l~s~~~  242 (351)
                      .|+++..             ...|.-|+.....  ....+.+. .+. ........|+|.|+|.++++.+.
T Consensus        93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            5555443             2356666554321  00001111 111 11224688999999988776543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.38  E-value=1.2  Score=38.58  Aligned_cols=160  Identities=9%  Similarity=0.048  Sum_probs=94.0

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-------CCeEEEEEcccCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-------GGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-------dg~i~~~d~~~~~~~~~~  213 (351)
                      |+-.+ +..|+-|++.. +..+.+.+.....- ....|..-..+++.++++..+-       .|.+.+|..+.+      
T Consensus       119 l~lVT-~taVyHWsi~~-~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------  189 (494)
T 1bpo_A          119 VALVT-DNAVYHWSMEG-ESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------  189 (494)
T ss_dssp             EEEEC-SSEEEEEESSS-SCCCEEEEECCGGG-TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC------
T ss_pred             EEEEc-CCeeEEecccC-CCCchhheecchhc-ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc------
Confidence            44433 45699999875 23445555432221 2456888888999998876552       478889988774      


Q ss_pred             cccccccccccEEEEEeecC---CCEEEEEeC---CCcEEEEcCCCc-ccccc-CccceEEeccccccccceeEEEEeee
Q 048511          214 PQKVPSGHFAAVMDISWSRS---SDYLLSVSH---DQTTRVFAPWKN-VASLM-GENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~sp~---~~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ..+.+++|...-..+.+.-+   ..+++.+..   .+.++|-++... ..... ..+.......+.....-.-++..++ 
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-  268 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-  268 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-
Confidence            35677788665544443221   123444433   278899888543 11110 0011111111122233356788888 


Q ss_pred             CCCcEEEEecCCCeEEEEecC-chhhh
Q 048511          286 KGNHRFVSGADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~  311 (351)
                       ....+..-..-|.|++||+. +.++.
T Consensus       269 -kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          269 -KHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             -TTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -cCCEEEEEecCceEEEEecccceeee
Confidence             77888889999999999987 55443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.22  E-value=1.1  Score=37.07  Aligned_cols=102  Identities=12%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             eEEeec------CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-----CeEEEEEcccCcc
Q 048511          141 ILSASM------DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-----GAFHLWRNVGVDI  209 (351)
Q Consensus       141 l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~  209 (351)
                      ++.|+.      -..+.+||+.+  ..+...-.   ..........+.+  +++.++.|+.+     ..+.+||+.+.+ 
T Consensus       162 yv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-  233 (318)
T 2woz_A          162 YCLGGKTDDKKCTNRVFIYNPKK--GDWKDLAP---MKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-  233 (318)
T ss_dssp             EEECCEESSSCBCCCEEEEETTT--TEEEEECC---CSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-
T ss_pred             EEEcCCCCCCCccceEEEEcCCC--CEEEECCC---CCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-
Confidence            555553      23588899887  65554322   1111111222222  56777777653     357788887754 


Q ss_pred             cCcccccccccccccEEEEEeecCCCEEEEEeCC--------------CcEEEEcCCCc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD--------------QTTRVFAPWKN  254 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d--------------g~i~vwd~~~~  254 (351)
                        |..+..+....... +++ .-++++++.|+.+              ..+.+||+.+.
T Consensus       234 --W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          234 --WEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             --EEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             --EEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence              33333332222211 222 2356677777653              35778887665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.07  E-value=0.38  Score=40.80  Aligned_cols=110  Identities=10%  Similarity=-0.001  Sum_probs=61.1

Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc---cccccccEEEEEeecC---CCEE-EEEeC---C---
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV---PSGHFAAVMDISWSRS---SDYL-LSVSH---D---  243 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~v~~v~~sp~---~~~l-~s~~~---d---  243 (351)
                      ....++|.|+++ |+++..++.|++++. .+.    ..+..   ..........|+++|+   +..| ++-+.   +   
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~----~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK----KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEECS-SCE----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc----eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            467899999998 555566799999873 221    11111   1122346889999997   4444 43332   3   


Q ss_pred             -CcEEEEcCCCccccccCcc-ceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          244 -QTTRVFAPWKNVASLMGEN-SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       244 -g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                       ..|..|+............ .+..+.....|  ....++|.|  |+.++++-++
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p--DG~Lyvt~G~  154 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP--DGMLYITTGD  154 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT--TSCEEEECCC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC--CCcEEEEECC
Confidence             5677777654410000000 01111111122  357899999  8888777543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.05  E-value=0.5  Score=40.00  Aligned_cols=124  Identities=12%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             ceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc----cccccccEEEEEeecC---CCEE-EEEeC------
Q 048511          177 GFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV----PSGHFAAVMDISWSRS---SDYL-LSVSH------  242 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~~~v~~v~~sp~---~~~l-~s~~~------  242 (351)
                      ..+.++|.|+++.|+++...|.|++++......   ..+..    ..........|+++|+   +..| ++-+.      
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEEC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCcee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            467899999998455566789999998543211   11111    1122346789999995   4444 43322      


Q ss_pred             -CCcEEEEcCCCccccccCccceEEe-cccc---ccccceeEEEEeeeCCCcEEEEecCC-------------CeEEEEe
Q 048511          243 -DQTTRVFAPWKNVASLMGENSWHEV-ARPQ---VHGHDINCVTIIQGKGNHRFVSGADE-------------KVARVFE  304 (351)
Q Consensus       243 -dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d-------------g~v~vw~  304 (351)
                       ...|..|++.......   ...+.+ ..+.   ...+....++|.|  |+.++++-++.             |.|.-++
T Consensus        96 ~~~~v~r~~~~~~~~~~---~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKV---TDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             EEEEEEEEEECTTSSBE---EEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             ceeEEEEEEECCCCCCC---CceEEEEEECCCCCCCcccCccEEECC--CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence             2356666654331100   011111 1111   1122356799999  88777775442             4566666


Q ss_pred             cCch
Q 048511          305 APLS  308 (351)
Q Consensus       305 ~~~~  308 (351)
                      ..+.
T Consensus       171 ~dG~  174 (353)
T 2g8s_A          171 DQGE  174 (353)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            6553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.56  E-value=1.1  Score=37.77  Aligned_cols=53  Identities=11%  Similarity=-0.053  Sum_probs=26.2

Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC------eEEEEEcccCc
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG------AFHLWRNVGVD  208 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~i~~~d~~~~~  208 (351)
                      .+.+||+.+  ..+...-.+   ........++  ..+++.++.|+.++      .+.++++++++
T Consensus       286 ~~~~yd~~~--~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          286 STDIHLWHN--GKWDKSGEL---SQGRAYGVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CCEEEECC-----CEEEEEC---SSCCBSSEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             eEEEEecCC--CceeeCCCC---CCCcccceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            477889887  555543221   1111112222  23677788888652      35566777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.51  E-value=1.8  Score=40.38  Aligned_cols=153  Identities=8%  Similarity=0.017  Sum_probs=82.2

Q ss_pred             eEEeecC----CeEEEEeccCCCcceEEEE-Ee--ccccccccceEEEEEcCCCCEEEEEeeC------CeEEEEEcccC
Q 048511          141 ILSASMD----KTMMIWQPEKTTGIWMNVV-TV--GELSHSALGFYGGHWSPDGRSILAHGYG------GAFHLWRNVGV  207 (351)
Q Consensus       141 l~s~~~d----~~i~iwd~~~~~~~~~~~~-~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~  207 (351)
                      ++.|+.+    ..+.+||+.+  ..+...- ..  .........-..+.+..+++.++.|+.+      ..+.+||+.+.
T Consensus       401 yv~GG~~~~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~  478 (695)
T 2zwa_A          401 FYMGGSNPYRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR  478 (695)
T ss_dssp             EEECCBSSSBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred             EEECCCCCCCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence            6667643    4688899888  6665433 10  0111111222233332267777777754      35788888775


Q ss_pred             cccCcccccccccccccEEEEEeecCCCEEEEEeCCC--cEEEEcCCCccccccCccceEEecc---ccccccceeEEEE
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ--TTRVFAPWKNVASLMGENSWHEVAR---PQVHGHDINCVTI  282 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~  282 (351)
                      .   |..+..+...... .+++...++++++.|+.++  .+.+||..+.        .|..+..   .......-.++.+
T Consensus       479 ~---W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--------~W~~~~~~g~~p~~r~~~~a~v~  546 (695)
T 2zwa_A          479 E---WSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE--------IFKDVTPKDEFFQNSLVSAGLEF  546 (695)
T ss_dssp             E---EEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT--------EEEECCCSSGGGGSCCBSCEEEE
T ss_pred             c---EEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC--------ceEEccCCCCCCCcccceeEEEE
Confidence            4   3333333222211 1223324778888887654  6899998765        4666653   1111122233444


Q ss_pred             eeeCCCcEEEEecC--C-----CeEEEEecCch
Q 048511          283 IQGKGNHRFVSGAD--E-----KVARVFEAPLS  308 (351)
Q Consensus       283 ~~~~~~~~l~s~~~--d-----g~v~vw~~~~~  308 (351)
                      .. .++.+++.||.  +     ..+.+||+...
T Consensus       547 ~~-~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          547 DP-VSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             ET-TTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             eC-CCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            44 12667788875  2     35888887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.26  E-value=0.9  Score=38.09  Aligned_cols=115  Identities=9%  Similarity=0.028  Sum_probs=65.1

Q ss_pred             ccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCC
Q 048511           49 SILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTA  128 (351)
Q Consensus        49 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~  128 (351)
                      +.+++.++.||.|.-.|..+++........                                  ...++.... .|... 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~----------------------------------~~~p~~~~~-~~~~~-   53 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE----------------------------------NFQPLIEIQ-EPSRL-   53 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG----------------------------------GSCCSEECC-CSCTT-
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC----------------------------------ccCCcEEec-CCccc-
Confidence            458888999999999999988776655421                                  001111110 00000 


Q ss_pred             CCCCcccCCCceeEEe-ecCCeEEEEeccCCCcceEEEEEeccccccccceEE---EEE-c----CCCCEEEEEeeCCeE
Q 048511          129 PSDGVSCQQPSSILSA-SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG---GHW-S----PDGRSILAHGYGGAF  199 (351)
Q Consensus       129 ~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~---i~~-~----~~~~~l~~~~~dg~i  199 (351)
                       .++..      ++.. +.||.|..++..+  |.....+.+..+. ...++..   ... .    ..+..+++++.+|.+
T Consensus        54 -~~~~~------~vv~p~~dG~l~a~~~~~--G~~~~~~~~~~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l  123 (339)
T 2be1_A           54 -ETYET------LIIEPFGDGNIYYFNAHQ--GLQKLPLSIRQLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM  123 (339)
T ss_dssp             -TSSEE------EEECCSTTTEEEEEETTT--EEEEEEEEHHHHH-TTCSEEEECC----------CCEEEEECEEEEEE
T ss_pred             -cCCcE------EEEEECCCCEEEEEECCC--CcEEeeeccccce-eccccccCCCceeecccccccCCEEEEEecCCEE
Confidence             12233      4443 6899999999887  6444444322211 1112221   000 0    145678999999999


Q ss_pred             EEEEcccCcc
Q 048511          200 HLWRNVGVDI  209 (351)
Q Consensus       200 ~~~d~~~~~~  209 (351)
                      ...|+++++.
T Consensus       124 ~ald~~tG~~  133 (339)
T 2be1_A          124 YTINMLNGEI  133 (339)
T ss_dssp             EEEETTTCCE
T ss_pred             EEEECCCCcE
Confidence            9999999853

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.18  E-value=4.1  Score=41.13  Aligned_cols=220  Identities=10%  Similarity=-0.020  Sum_probs=112.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----cc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YR   80 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~   80 (351)
                      ..+++|||+++ +.  .+..+.- ...|.-=.|.         +.+.|+-.+ +..|.-|++............    ..
T Consensus        85 g~~lQiFnl~~-k~--klks~~~-~e~VvfWkWi---------s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~  150 (1630)
T 1xi4_A           85 GKTLQIFNIEM-KS--KMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG  150 (1630)
T ss_pred             CCeEEEeehHH-hh--hhccccc-CCCceEEEec---------CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence            35678888877 32  1222221 2356566665         233454444 457999999753322222111    14


Q ss_pred             cceeeeEeeecCCeEEecC-------CceeEEEEE-------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           81 KEVISLASYIEGPVLVAGS-------SSYQVSVES-------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      ..+.....+++.+.++..+       -.|.+.+.+       .+.||...-..+...-..   ....+      ++.+..
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~---~~~~l------~~f~~~  221 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVR  221 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCC---CCceE------EEEEEe
Confidence            5566667777777666522       223333332       355665544444332111   12222      443332


Q ss_pred             ---CCeEEEEeccCC-CcceE---EEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          147 ---DKTMMIWQPEKT-TGIWM---NVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       147 ---d~~i~iwd~~~~-~~~~~---~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                         .+.++|-++... .+...   +...+... ........++..++....++.-+.-|.|++||+.++     .++..-
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~-----~~i~~~  296 (1630)
T 1xi4_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMN  296 (1630)
T ss_pred             cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc-----hhhhhc
Confidence               368999988652 11111   11111111 122333456777888888888999999999999998     445444


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      +-....|...+......-++.....|.|.--.+.
T Consensus       297 ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             cccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            3344444444433322223333455555444443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.41  E-value=3.1  Score=34.99  Aligned_cols=41  Identities=17%  Similarity=-0.065  Sum_probs=28.8

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR   69 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~   69 (351)
                      .+..+...-..-+.|+|.        ++++++++--..|.|++++...+
T Consensus        23 ~~~~va~gL~~P~~ia~~--------pdG~llVter~~G~I~~v~~~~g   63 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPL--------PGGDLLVSSRDEATITRVDAKTG   63 (347)
T ss_dssp             EEEEEECCCSSEEEEEEC--------TTSCEEEEETTTCEEEEECTTTC
T ss_pred             eeEEeecCCCCceEEEEc--------CCCcEEEEEecCCEEEEEECCCC
Confidence            344444445567899999        88887776655899988876543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.30  E-value=3.2  Score=34.87  Aligned_cols=117  Identities=11%  Similarity=-0.002  Sum_probs=65.3

Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc-ccccccceEEEEEcCC---
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-LSHSALGFYGGHWSPD---  186 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~---  186 (351)
                      ...-...+.|+|.      +++.+      +++--..|.|++++...  +.......+.. ..........|+++|+   
T Consensus        28 a~gL~~P~~ia~~------pdG~l------lVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~   93 (347)
T 3das_A           28 ATGLNSPWGLAPL------PGGDL------LVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYAS   93 (347)
T ss_dssp             ECCCSSEEEEEEC------TTSCE------EEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred             ecCCCCceEEEEc------CCCcE------EEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEecccccc
Confidence            3334567899999      78876      66665589999998655  33221111111 1123456889999995   


Q ss_pred             CCEEEEEe---eCCeEEEEEcccCc-----ccCcccc-cccc-cccccEEEEEeecCCCEEEEEe
Q 048511          187 GRSILAHG---YGGAFHLWRNVGVD-----IDNWQPQ-KVPS-GHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       187 ~~~l~~~~---~dg~i~~~d~~~~~-----~~~~~~~-~~~~-~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      +..|++..   .++.|.-|.+....     ....+.+ ..+. ........|.|.|+|.++++.+
T Consensus        94 ~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           94 DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            44454432   34566666665421     1111111 1111 1112345699999998777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.22  E-value=3.5  Score=41.57  Aligned_cols=160  Identities=9%  Similarity=0.047  Sum_probs=87.8

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-------eCCeEEEEEcccCcccCcc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-------YGGAFHLWRNVGVDIDNWQ  213 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~  213 (351)
                      |+-.+ +..|.-|++.. +..+.+.+..... -....|..-..+++.++++..+       ..|.+.+|..+.+      
T Consensus       119 l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~-L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------  189 (1630)
T 1xi4_A          119 VALVT-DNAVYHWSMEG-ESQPVKMFDRHSS-LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------  189 (1630)
T ss_pred             eEEEc-CCeEEEeccCC-CCccHHHHhcchh-cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------
Confidence            44433 34699999964 1233332221111 1135677778889999887655       3488999988774      


Q ss_pred             cccccccccccEEEEEee--cC-CCEEEEEeC---CCcEEEEcCCCc-ccccc-CccceEEeccccccccceeEEEEeee
Q 048511          214 PQKVPSGHFAAVMDISWS--RS-SDYLLSVSH---DQTTRVFAPWKN-VASLM-GENSWHEVARPQVHGHDINCVTIIQG  285 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~s--p~-~~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (351)
                      ..+.+.||.+.-..+...  +. ...++.+..   .+.++|-++... ..... ..+.......+.....-..++..++ 
T Consensus       190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-  268 (1630)
T 1xi4_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-  268 (1630)
T ss_pred             cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-
Confidence            355666776544333332  11 223332222   268888888543 11110 0010001111111222355777887 


Q ss_pred             CCCcEEEEecCCCeEEEEecC-chhhh
Q 048511          286 KGNHRFVSGADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~-~~~~~  311 (351)
                       ....+...+.-|.|+++|+. +.++.
T Consensus       269 -k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          269 -KHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             -ccCEEEEEecCceEEEEecccchhhh
Confidence             67788888899999999987 55443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.78  E-value=3.9  Score=34.44  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             ccEEEEEeec-------CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          223 AAVMDISWSR-------SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       223 ~~v~~v~~sp-------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      ..+..+.|..       ++.++++.-..+.|...++..+..       ......+......+..+++.|  ||.++++..
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~rp~~v~~~p--dG~lyv~td  341 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-------TEDGRILTDRGQRIRDVRTGP--DGYLYVLTD  341 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-------EEEEEESGGGCCCEEEEEECT--TSCEEEEEC
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-------eeeEEcccCCCCceeEEEECC--CCcEEEEEe
Confidence            3567788764       466666666677787777764321       111111112234588999998  888776533


Q ss_pred             -CCCeE
Q 048511          296 -DEKVA  300 (351)
Q Consensus       296 -~dg~v  300 (351)
                       .+|.|
T Consensus       342 ~~~g~I  347 (353)
T 2g8s_A          342 ESSGEL  347 (353)
T ss_dssp             STTEEE
T ss_pred             CCCCEE
Confidence             45543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.13  E-value=2.9  Score=36.76  Aligned_cols=119  Identities=12%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             ceEEEEEcCCCC-EEEEEeeCCeEEEEEcccCcc-cCcccccc-cc-----cccccEEEEEeecC----CCEEEEEeC--
Q 048511          177 GFYGGHWSPDGR-SILAHGYGGAFHLWRNVGVDI-DNWQPQKV-PS-----GHFAAVMDISWSRS----SDYLLSVSH--  242 (351)
Q Consensus       177 ~i~~i~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~-~~-----~~~~~v~~v~~sp~----~~~l~s~~~--  242 (351)
                      ..+.|+|.|++. .|+++...|.|++++...... ..+.-+.. +.     ........|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            457899999996 566677899999997543211 00010111 11     11456889999996    444443332  


Q ss_pred             C----------CcEEEEcCCCcc---ccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          243 D----------QTTRVFAPWKNV---ASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       243 d----------g~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      +          ..|.-|.+....   ......+.+..+.. ....+....|+|.|  |+.+.++.++.+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~-~~~~H~g~~l~fgp--DG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE-LHRKHLGGQLLFGP--DGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE-SSSSSCEEEEEECT--TSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC-CCCcccCCcEeECC--CCcEEEEeCCCC
Confidence            1          134445554321   00000111112211 12223468899999  888888777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.86  E-value=6.2  Score=34.62  Aligned_cols=32  Identities=6%  Similarity=-0.085  Sum_probs=22.1

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCC
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLAL   68 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~   68 (351)
                      -...+.|+|.        ++++++++-...+.|++++..+
T Consensus        26 l~~P~~~a~~--------pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           26 LNKPHALLWG--------PDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             CSSEEEEEEC--------TTSCEEEEETTTCEEEEECTTT
T ss_pred             CCCceEEEEc--------CCCcEEEEEcCCCEEEEEECCC
Confidence            3456799999        8888777654434687776543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.75  E-value=5.3  Score=33.61  Aligned_cols=28  Identities=7%  Similarity=0.071  Sum_probs=20.2

Q ss_pred             ceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          276 DINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ....++|.   ++.++++.-..+.|...+++
T Consensus       269 ap~G~~~~---~G~l~v~~~~~~~v~~v~~~  296 (352)
T 2ism_A          269 PPGNLAFF---RGDLYVAGLRGQALLRLVLE  296 (352)
T ss_dssp             CEEEEEEE---TTEEEEEETTTTEEEEEEEE
T ss_pred             CCcceEEE---CCEEEEEECCCCEEEEEEEC
Confidence            35677773   57777777777888877765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.53  E-value=9.2  Score=35.97  Aligned_cols=232  Identities=7%  Similarity=0.006  Sum_probs=113.1

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVES  108 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  108 (351)
                      ...|++|.-.        .+| +|-.|..+| +..||-................+.++....+|.+.+ +...+.. ...
T Consensus        21 ~n~V~~I~qD--------~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gT~~Gl~-~yd   88 (758)
T 3ott_A           21 ASVVSCFLQD--------SEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYM-GTDNGIL-VYN   88 (758)
T ss_dssp             CCCEEEEEEC--------TTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEE-EETTEEE-EEE
T ss_pred             cceEEEEEEC--------CCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEE-EeCCCeE-EEe
Confidence            4578888877        555 455566777 445664322111101111123455655555554444 3333322 111


Q ss_pred             e----c----cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEE
Q 048511          109 L----L----IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYG  180 (351)
Q Consensus       109 ~----~----~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~  180 (351)
                      .    +    ......|.++...       ++.       |..++.+ -+..+|..+  +... .+...........|.+
T Consensus        89 ~~~~~f~~~~~~~~~~i~~i~~~-------~g~-------lWigt~~-Gl~~~~~~~--~~~~-~~~~~~~~l~~~~i~~  150 (758)
T 3ott_A           89 YRADRYEQPETDFPTDVRTMALQ-------GDT-------LWLGALN-GLYTYQLQS--RKLT-SFDTRRNGLPNNTIYS  150 (758)
T ss_dssp             TTTTEECCCSCCCCSCEEEEEEE-------TTE-------EEEEETT-EEEEEETTT--CCEE-EECHHHHCCSCSCEEE
T ss_pred             CCCCEEECcccCCCceEEEEEec-------CCc-------EEEEcCC-cceeEeCCC--CeEE-EeccCCCCcCCCeEEE
Confidence            1    0    0112235555432       333       5555555 577888765  3322 2210001112346888


Q ss_pred             EEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC
Q 048511          181 GHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG  260 (351)
Q Consensus       181 i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~  260 (351)
                      +....++.+.+ ++. +-|..|+..+.....+............|.++...+++..|..|+. +-+..+|..+..     
T Consensus       151 i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~-----  222 (758)
T 3ott_A          151 IIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ-----  222 (758)
T ss_dssp             EEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE-----
T ss_pred             EEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe-----
Confidence            88887777554 444 4577888766432100000000001234888888777665444553 458888876654     


Q ss_pred             ccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          261 ENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                         +.....+  ....|.++....  ++.+.+. +.+| +.+++...
T Consensus       223 ---~~~~~~l--~~~~i~~i~~d~--~g~lWig-T~~G-l~~~~~~~  260 (758)
T 3ott_A          223 ---IKQTEAF--HNNSIKSLALDG--NGDLLAG-TDNG-LYVYHNDT  260 (758)
T ss_dssp             ---EEEEEEE--EEEEEEEEEECT--TCCEEEE-ETTE-EEEECCTT
T ss_pred             ---EEeccCC--CCCeEEEEEEcC--CCCEEEE-eCCc-eeEEecCC
Confidence               1111111  223477777665  5555443 3444 66777653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=89.95  E-value=8  Score=32.56  Aligned_cols=65  Identities=11%  Similarity=-0.063  Sum_probs=39.2

Q ss_pred             ccEEEEEee-------cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          223 AAVMDISWS-------RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       223 ~~v~~v~~s-------p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      .....++|.       .+|.++++.-..+.|...++......    .....+  +......+..+++.|  |+.++++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~----~~~~~~--~~~~~~rp~~v~~~p--DG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV----RKISTF--FKNVFGRLRDVVIDD--DGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE----EEEEEE--CTTTSCCEEEEEECT--TSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc----cceeee--ccCCCCCeeEEEECC--CCcEEEEEe
Confidence            356788883       46777776666778888887653210    001111  112234588999998  887777664

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.28  E-value=9.4  Score=32.48  Aligned_cols=155  Identities=12%  Similarity=0.061  Sum_probs=86.3

Q ss_pred             CeEEEEeccCCCc--ceEEEEEecc-ccccccceEEEEEc---CC----CCEEEEEe-eCCeEEEEEcccCcccCcc---
Q 048511          148 KTMMIWQPEKTTG--IWMNVVTVGE-LSHSALGFYGGHWS---PD----GRSILAHG-YGGAFHLWRNVGVDIDNWQ---  213 (351)
Q Consensus       148 ~~i~iwd~~~~~~--~~~~~~~~~~-~~~~~~~i~~i~~~---~~----~~~l~~~~-~dg~i~~~d~~~~~~~~~~---  213 (351)
                      -.|.+||+.+  .  +.++++.+.. .......+..+++.   |.    +.+++.+. ....|.+||+.+++.....   
T Consensus       123 pkLv~~DL~t--~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~  200 (381)
T 3q6k_A          123 PAIVAYDLKQ--PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT  200 (381)
T ss_dssp             CEEEEEESSS--TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred             ceEEEEECCC--CCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence            3688999999  6  7888777632 22334567888887   22    34555554 4678999999876431110   


Q ss_pred             --cc----cccccc----cccEEEEEeecC----CCEEEEEeCCCcEEEEcCCCccccccC-ccceEEecccccccccee
Q 048511          214 --PQ----KVPSGH----FAAVMDISWSRS----SDYLLSVSHDQTTRVFAPWKNVASLMG-ENSWHEVARPQVHGHDIN  278 (351)
Q Consensus       214 --~~----~~~~~~----~~~v~~v~~sp~----~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  278 (351)
                        +-    ..+.+.    ...|..|+++|+    ++.|.-....+ -++|.+.+.-..... ...++.+... +....-.
T Consensus       201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~  278 (381)
T 3q6k_A          201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAI  278 (381)
T ss_dssp             GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEE
T ss_pred             CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeec-CCCCCcc
Confidence              00    000111    236888999997    67776655443 245544322111000 0122222211 1112223


Q ss_pred             EEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          279 CVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       279 ~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      .+++.+ .+|.++++--+...|..|+..+
T Consensus       279 ~~~~D~-~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          279 ALAYDP-KTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEEECT-TTCEEEEEESSSSEEEEEETTS
T ss_pred             eEEEeC-CCCeEEEEeccCCeEEEEeCCC
Confidence            455542 2688888888999999999876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.91  E-value=5.1  Score=36.00  Aligned_cols=75  Identities=12%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             EEEEEcCCCCEEEEEe-eCCeEEEEEcccCcc----cCccc----ccccccccccEEEEEeecCCCEEEEEeCCCcEEEE
Q 048511          179 YGGHWSPDGRSILAHG-YGGAFHLWRNVGVDI----DNWQP----QKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF  249 (351)
Q Consensus       179 ~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~----~~~~~----~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vw  249 (351)
                      ..+.++|||+++++++ .+.++.++|++.-..    +...+    +.... -.-...-.+|.++|....|---|..|.-|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            4678899999988877 578999999974211    00011    11222 12345678999999555566679999999


Q ss_pred             cCCCc
Q 048511          250 APWKN  254 (351)
Q Consensus       250 d~~~~  254 (351)
                      ++...
T Consensus       405 ni~~a  409 (638)
T 3sbq_A          405 NMEEA  409 (638)
T ss_dssp             EHHHH
T ss_pred             eccHH
Confidence            98653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.18  E-value=31  Score=33.50  Aligned_cols=40  Identities=10%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG  169 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  169 (351)
                      .+.++...      ++..+      +++-+.|+++|+|++.+  +.++.+..+.
T Consensus       237 ~~~~~~~~------~~~~~------lftl~~D~~LRiWsl~t--~~~v~t~dL~  276 (950)
T 4gq2_M          237 TIISMIFL------STYNV------LVMLSLDYKLKVLDLST--NQCVETIELS  276 (950)
T ss_dssp             CEEEEEEE------TTTTE------EEEEETTCEEEEEETTT--TEEEEEEECC
T ss_pred             eEEEEeec------CCCcE------EEEEECCCEEEEEECCC--CCeEeeeccc
Confidence            45666666      56667      99999999999999999  8887776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=82.17  E-value=33  Score=32.14  Aligned_cols=264  Identities=10%  Similarity=0.038  Sum_probs=128.2

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee------cccc
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ------STYR   80 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------~~~~   80 (351)
                      -|..++..+ +++.....+.  ...|.++...        .++.+.+ |+.+| +.+++..+........      ....
T Consensus       212 Gl~~~~~~~-~~~~~~~~l~--~~~i~~i~~d--------~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~  278 (758)
T 3ott_A          212 YLFQYFPST-GQIKQTEAFH--NNSIKSLALD--------GNGDLLA-GTDNG-LYVYHNDTTPLQHIIHDSRNIQSLTN  278 (758)
T ss_dssp             EEEEEETTT-TEEEEEEEEE--EEEEEEEEEC--------TTCCEEE-EETTE-EEEECCTTSCCEEECCCTTCTTSCSC
T ss_pred             CCeEEcCCC-CeEEeccCCC--CCeEEEEEEc--------CCCCEEE-EeCCc-eeEEecCCCcEEEEEcCCCCcCcCCc
Confidence            456667665 5444333332  2357777776        5565554 44444 7777776543211110      0112


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE------ec-------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES------LL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ..+.++....+|.+.+.... + +....      .+       ......|.++...      .++.       |..|+.+
T Consensus       279 ~~i~~i~~D~~g~lWiGT~~-G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D------~~g~-------lWiGt~~  343 (758)
T 3ott_A          279 NIIWNIFADQEHNIWLGTDY-G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRD------SKGF-------YWFGGAN  343 (758)
T ss_dssp             SCEEEEEECTTCCEEEEESS-S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEEC------TTCC-------EEEEETT
T ss_pred             CeEEEEEEcCCCCEEEEeCC-c-ccccccCCceeEEecccCCCCCCCceEEEEEEc------CCCC-------EEEeeCC
Confidence            34556666666666554432 2 11110      00       0112357777766      5555       4555555


Q ss_pred             CeEEEEeccCCCcceEEEEEecc--ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc-ccccc
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGE--LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS-GHFAA  224 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-~~~~~  224 (351)
                      | +..++..+........+....  ..-....|.++.-..++++ ..|+ ++-|..||..+++...+....... .....
T Consensus       344 G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (758)
T 3ott_A          344 G-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNW  420 (758)
T ss_dssp             E-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSS
T ss_pred             c-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCce
Confidence            4 666665541111111121100  0012245888888887764 4455 457999998775421111000000 02345


Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE---Eecccc-ccccceeEEEEeeeCCCcEEE-EecCCCe
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH---EVARPQ-VHGHDINCVTIIQGKGNHRFV-SGADEKV  299 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~~~~~~~l~-s~~~dg~  299 (351)
                      |.++...+++.+. .|+..+-|.++|........  ...+.   ...... .....|.++...+  ++.+.+ .+..+| 
T Consensus       421 v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~i~~i~~d~--~g~lWi~~~t~~G-  494 (758)
T 3ott_A          421 TYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQST--SGQYIAEQNYSVHNGLSGMFINQIIPDN--EGNVWVLLYNNKG-  494 (758)
T ss_dssp             EEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCC--SSEEECSEEECGGGTCSCSCEEEEEECT--TSCEEEEETTCSS-
T ss_pred             EEEEEEcCCCCEE-EEECCCceEEEccccccccC--CcceecccccccccccccceeeeEEEcC--CCCEEEEccCCCC-
Confidence            8888877777644 46666678888854210000  00010   111111 1223477887766  677665 344555 


Q ss_pred             EEEEecCc
Q 048511          300 ARVFEAPL  307 (351)
Q Consensus       300 v~vw~~~~  307 (351)
                      |..+|...
T Consensus       495 l~~~d~~~  502 (758)
T 3ott_A          495 IDKINPRT  502 (758)
T ss_dssp             EEEEETTT
T ss_pred             cEEEeCCC
Confidence            66677653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.47  E-value=29  Score=30.41  Aligned_cols=117  Identities=7%  Similarity=-0.057  Sum_probs=59.8

Q ss_pred             cceEEEEecCCCCCCCCCc-ccCCCceeEEeecCCeEEEEeccCCC-cceEEEEEecccc----ccccceEEEEEcCC--
Q 048511          115 DWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMDKTMMIWQPEKTT-GIWMNVVTVGELS----HSALGFYGGHWSPD--  186 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~----~~~~~i~~i~~~~~--  186 (351)
                      ...+.|+|.      +++. .      |+++...|.|++++..... ...+..+......    ........|+|+|+  
T Consensus        14 ~~P~~~a~~------pdG~~r------l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~   81 (463)
T 2wg3_C           14 RQPVGALHS------GDGSQR------LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK   81 (463)
T ss_dssp             SSEEEEECC------SSSSCC------EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred             CCceEEEEC------CCCCeE------EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence            346789999      6775 4      5566788999999754210 0111111100000    12456889999996  


Q ss_pred             -CCEEEEE-eeC------------CeEEEEEcccCcc-----cCcccccccc--cccccEEEEEeecCCCEEEEEeCC
Q 048511          187 -GRSILAH-GYG------------GAFHLWRNVGVDI-----DNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       187 -~~~l~~~-~~d------------g~i~~~d~~~~~~-----~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                       ..+|++. +.+            ..|.-|.+.....     ...+.+..+.  ........|.|.|||.+.++.+..
T Consensus        82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence             2334333 221            1444455543210     0011121111  112245789999999877766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 22/140 (15%)

Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169
             GHE  + ++ + P      +G      ++  + S D T  ++       +        
Sbjct: 222 FTGHESDINAICFFP------NG------NAFATGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229
               +++      +S  GR +LA       ++W     D        V +GH   V  + 
Sbjct: 270 ICGITSV-----SFSKSGRLLLAGYDDFNCNVW-----DALKADRAGVLAGHDNRVSCLG 319

Query: 230 WSRSSDYLLSVSHDQTTRVF 249
            +     + + S D   +++
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 32/282 (11%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L+GH   I ++ +           S LLVS+SQD  + IW      +  +        V+
Sbjct: 51  LRGHLAKIYAMHWG--------TDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVM 101

Query: 85  SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144
           + A         A S +Y        I     + + +     +    G +          
Sbjct: 102 TCA--------YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153

Query: 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204
                                      +           +PD R  ++     +  LW  
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-- 211

Query: 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264
              D+     ++  +GH + +  I +  + +   + S D T R+F    +          
Sbjct: 212 ---DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------E 260

Query: 265 HEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
                       I  V+    K     ++G D+    V++A 
Sbjct: 261 LMTYSHDNIICGITSVSF--SKSGRLLLAGYDDFNCNVWDAL 300

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 11/63 (17%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G  D   +++             L GH + +  L  +           + + + S D  +
Sbjct: 288 GYDDFNCNVWDA-LKADRAG--VLAGHDNRVSCLGVT--------DDGMAVATGSWDSFL 336

Query: 62  RIW 64
           +IW
Sbjct: 337 KIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 18/156 (11%)

Query: 51  LLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL 110
           L VS + D   ++W +   G    T + +  ++ ++  +  G     GS      +    
Sbjct: 198 LFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL---- 252

Query: 111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSS----ILSASMDKTMMIWQPEKTTGIWMNVV 166
              +                 G++    S     +L+   D    +W   K         
Sbjct: 253 --FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD------- 303

Query: 167 TVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
             G L+           + DG ++    +     +W
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 29/214 (13%)

Query: 52  LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-- 109
           +VS+S+DK I++W++   G    T + +R+ V  +    +G ++ + S+   V V  +  
Sbjct: 116 IVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 110 ------LIGHEDWVYSVQWEPPSTAPSDG--------VSCQQPSSILSASMDKTMMIWQP 155
                 L  H   V  + W P S+  S           S +    +LS S DKT+ +W  
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234

Query: 156 EKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQ 215
                       +  L        G  +   G+ IL+        +W     D  N +  
Sbjct: 235 STGM-------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-----DYKNKRCM 282

Query: 216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           K  + H   V  + + +++ Y+++ S DQT +V+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 45/292 (15%), Positives = 88/292 (30%), Gaps = 37/292 (12%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           L GH   +  + F          +  ++VS+S+D  I++W     G    T   +   V 
Sbjct: 13  LSGHRSPVTRVIFH--------PVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQ 63

Query: 85  SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144
            ++    G +     +S    +   L   + +             S          I+SA
Sbjct: 64  DISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204
           S DKT+ +W+ +    +          +           + DG  I +        +W  
Sbjct: 120 SRDKTIKMWEVQTGYCVK-------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW-- 170

Query: 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK----------N 254
               +   + +     H   V  ISW+  S Y        +    +              
Sbjct: 171 ---VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
              +   ++   +     H + +  V      G    +S AD+K  RV++  
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 33/152 (21%)

Query: 23  CELKGHTDWIRSLDF------------SLPVCTSGEAISILLVSSSQDKVIRIWKLALRG 70
            EL+ H   +  + +            +             L+S S+DK I++W ++  G
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TG 237

Query: 71  SSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL--------LIGHEDWVYSVQW 122
               T   +   V  +  +  G  +++ +    + V           L  HE +V S+ +
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 123 EPPSTAPSDGVSCQQPSSILSASMDKTMMIWQ 154
                             +++ S+D+T+ +W+
Sbjct: 298 HK------TA------PYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 21/171 (12%)

Query: 2   GGLDNKIHLYRGQRTGKFVR----ACELKGHTDWIRSLDFSLP---VCTSGEAISILLVS 54
           G LD  + ++  +      R         GH D + S+ F+     V +     S+ L +
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 55  SSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL----- 109
                     K    G+   T   ++  V+S+A+      +++GS    V          
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 110 ---LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK 157
              L GH + V SV     S+   +       +   + S D    IW+ +K
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEY------NVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 19/292 (6%)

Query: 24  ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLA-------LRGSSANTQ 76
           +   HT  +  + FS      GE      +++  +K  ++++++       L   SA  +
Sbjct: 57  KSLDHTSVVCCVKFS----NDGE-----YLATGCNKTTQVYRVSDGSLVARLSDDSAANK 107

Query: 77  STYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQ 136
                   S  S       V  S   +                   +             
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167

Query: 137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG 196
                 S     +    +  +   +     ++                 DG+ I A    
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLD 226

Query: 197 GAFHLW--RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254
            A  +W      +        +  +GH  +V  + ++R    ++S S D++ +++     
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286

Query: 255 VASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
                 +            GH    +++   + +   +SG+ ++    ++  
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 28/151 (18%)

Query: 110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169
             GH+D VYSV +                 S++S S+D+++ +W  +       +     
Sbjct: 250 GTGHKDSVYSVVFTRDGQ------------SVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297

Query: 170 ELSHSALGFYGGH-----WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAA 224
                    +         + +   IL+         W     D  +  P  +  GH  +
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSGNPLLMLQGHRNS 352

Query: 225 VMDI------SWSRSSDYLLSVSHDQTTRVF 249
           V+ +      S     +   + S D   R++
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242
           W+ D   I         H++       + W        H   V  + W+  S+ +++   
Sbjct: 15  WNKDRTQIAICPNNHEVHIYE---KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 243 DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV 292
           D+   V+                  A   V          +        +
Sbjct: 72  DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 37/254 (14%), Positives = 74/254 (29%), Gaps = 15/254 (5%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
              ++++H+Y  +   K+V+  ELK H   +  +D++          S  +V+   D+  
Sbjct: 25  CPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWA--------PDSNRIVTCGTDRNA 75

Query: 62  RIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVA-GSSSYQVSVESLLIGHEDWVYSV 120
            +W L  R                   +       A GS S  +S+      ++ WV   
Sbjct: 76  YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 135

Query: 121 QWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPE-KTTGIWMNVVTVGELSHSALGFY 179
             +P  +             + + S D    I+    K           G         +
Sbjct: 136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF 195

Query: 180 GGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS----D 235
               S      +     G+   W +    +      K  +    A   +     +     
Sbjct: 196 ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 255

Query: 236 YLLSVSHDQTTRVF 249
            L++  HD    +F
Sbjct: 256 SLVAAGHDCFPVLF 269

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 35/314 (11%), Positives = 73/314 (23%), Gaps = 49/314 (15%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
            K H   I S+             +   VS S D  +++W   L  +      +Y   V 
Sbjct: 10  GKAHDADIFSVSAC----------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH 59

Query: 85  SL------------ASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDG 132
                             E  ++   S S  +    +    E      +      +    
Sbjct: 60  KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119

Query: 133 VSC-----------QQPSSILSASMDKTMMIWQPEKT-----------TGIWMNVVTVGE 170
            S                 +++  +  T  IW+               +       TV  
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179

Query: 171 LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW 230
               +        S  G        G       +    + N++ Q     +  ++  + +
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 231 SRSSDYLLSVSHDQTTRVFAPW-----KNVASLMGENSWHEVARPQVHGHDINCVTIIQG 285
           S     L       +      +     + + SL       + +  +              
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 286 KGNHRFVSGADEKV 299
            G     +G D K+
Sbjct: 300 SGETLCSAGWDGKL 313

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 36/317 (11%), Positives = 78/317 (24%), Gaps = 40/317 (12%)

Query: 15  RTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN 74
           R G+      LKGH D + +      +   G      +VS S D  +++W     G    
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-----LQFCGN----RIVSGSDDNTLKVWSAV-TGKCLR 51

Query: 75  TQSTYRKEVISLA---SYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSD 131
           T   +   V S     + I           +       +        +V+          
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG-------------- 177
             S      +      + + +          +       +S +                 
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171

Query: 178 ------FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS 231
                         DG  +++     +  +W     D++        +GH +    +   
Sbjct: 172 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW-----DVETGNCIHTLTGHQSLTSGMEL- 225

Query: 232 RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF 291
              + L+S + D T +++           +      +       + N V      G  + 
Sbjct: 226 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKL 284

Query: 292 VSGADEKVARVFEAPLS 308
                 +  R      S
Sbjct: 285 WDLKTGEFIRNLVTLES 301

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 31/271 (11%), Positives = 68/271 (25%), Gaps = 30/271 (11%)

Query: 3   GLDNKIHLY--RGQRTGKFVRACELKGHTDWIRSLDFS-----LPVCTSGEAISILLVSS 55
           G    + ++          V   +     ++IRS         L V      +SI  +++
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 56  SQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHED 115
              ++      +     A   S   K   S  S     V    + +     +    G   
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188

Query: 116 WVYSVQWEPPSTAPSDGVSCQQPSSI-----------------LSASMDKTMMIWQPEKT 158
              S       T   D                              + +   +  +    
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNV 248

Query: 159 TGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP 218
             + +N     +L           ++  G+  ++ G     + W                
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW-----RTPYGASIFQ- 302

Query: 219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
           S   ++V+    S    Y+++ S D+   V+
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 19/265 (7%), Positives = 66/265 (24%), Gaps = 19/265 (7%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY--RKE 82
            +   D+I  +        S      LL+ +S D  + ++K  ++  + +   +   +  
Sbjct: 7   EQAPKDYISDIKII----PSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 83  VISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL 142
           ++         + +   +     +    +                       C+     L
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEIL---KVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115

Query: 143 SASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLW 202
            A+    ++     +  G  +  V     +++ +         +   ++          +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

Query: 203 RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF-----APWKNVAS 257
             + +  D+    +     +         +  +     S D    V          N + 
Sbjct: 176 -RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234

Query: 258 LMGENSWHEVARPQVHGHDINCVTI 282
                      +     + +N +  
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEF 259

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQV 272
           Q  ++       + DI    S   LL  S D +  V+           +    ++ +   
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY-------KFDIQAKNVDLLQSLR 54

Query: 273 HGHDINCVTIIQGKGNHRFVSG 294
           + H + C   I       +V  
Sbjct: 55  YKHPLLCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 14/128 (10%)

Query: 134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH--------WSP 185
             ++      +S+D  + +   +     + +        H                 +SP
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQT 245
             + +   G  G    W     ++   +  K  +        +  + S + L   + D T
Sbjct: 262 RHKFLYTAGSDGIISCW-----NLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDT 315

Query: 246 TRVFAPWK 253
            +  A   
Sbjct: 316 FKTNAAID 323

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 21/265 (7%), Positives = 51/265 (19%), Gaps = 16/265 (6%)

Query: 52  LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI 111
           +    +   + ++                     + +Y     L     +      S   
Sbjct: 71  IARGERTDYVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129

Query: 112 GHEDWVYS--VQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG 169
                                  +    P +      D ++            +    V 
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF 189

Query: 170 ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS 229
                 L      +S     ++   Y G  H          + +          A     
Sbjct: 190 HPEDEFL-INHPAYSQKAGRLVWPTYTGKIHQIDLSS---GDAKFLPAVEALTEAERADG 245

Query: 230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH---------EVARPQVHGHDINCV 280
           W       ++             +         S           E       GH+I+ +
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI 305

Query: 281 TIIQGKGNHRFVSGADEKVARVFEA 305
            + Q +    +     +K   + +A
Sbjct: 306 NVSQDEKPLLYALSTGDKTLYIHDA 330

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 6/83 (7%)

Query: 183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH 242
            +P G   + +  G + +        + +    ++ + H         S S  Y  S   
Sbjct: 25  NTPAGD-KIQYCNGTSVYTV-----PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 243 DQTTRVFAPWKNVASLMGENSWH 265
               R++   +    L       
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVF 101

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 21/297 (7%), Positives = 48/297 (16%), Gaps = 39/297 (13%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
           + GH   I +L  +             L+S S D  I  W        ++    +   ++
Sbjct: 9   ISGHNKGITALTVN------------PLISGSYDGRIMEWSS------SSMHQDHSNLIV 50

Query: 85  SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144
           SL +                                                        
Sbjct: 51  SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204
                 +      +            L              +    L             
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264
              +        +       +       S     +   +  +   A        + E+  
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 265 H------------------EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVF 303
                               +     H   +N +           VS   +   + +
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE---TPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.5 bits (82), Expect = 0.004
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVI 61
           G LD  I +Y  +R  K ++A  L  H D + +L +  P           LVSS  D  I
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKA--LNAHKDGVNNLLWETPS---------TLVSSGADACI 281

Query: 62  RIWK 65
           + W 
Sbjct: 282 KRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 37/300 (12%), Positives = 66/300 (22%), Gaps = 27/300 (9%)

Query: 25  LKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI 84
             GH   I +L  S      G+     L S+  +  I  W ++  G S          +I
Sbjct: 8   RYGHNKAITALSSS----ADGK----TLFSADAEGHINSWDIS-TGISNRVFPDVHATMI 58

Query: 85  SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA 144
           +         L   S    + V        D   +V  +  S      VS     ++ + 
Sbjct: 59  TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 145 SMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRN 204
                +          I  N   V   +       GG  S      L+           +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 205 VGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW 264
                                       S      ++H  +           S   +N  
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 265 H------------------EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP 306
                              +        H ++ V  +        VS   +   + +  P
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 29/283 (10%), Positives = 65/283 (22%), Gaps = 38/283 (13%)

Query: 2   GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFS----------------------- 38
           G  D  I +Y      KF+   +L GH   + +L ++                       
Sbjct: 29  GADDKMIRVYDSI-NKKFLL--QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 85

Query: 39  ------------LPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISL 86
                         +          +V+ S+D  + +WKL    S  +    +   ++  
Sbjct: 86  CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145

Query: 87  ASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM 146
                   +                G+     S          +        S       
Sbjct: 146 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 205

Query: 147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG 206
                  +    +      + + +L +  L +     +     +                
Sbjct: 206 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 265

Query: 207 VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVF 249
              D     +  S H   +  I+    SD +L    +    ++
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 24/265 (9%)

Query: 25  LKGHTDWIRS-LDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEV 83
           L+GH   + + L F              +++ + DK+IR++            S +   V
Sbjct: 8   LRGHMTSVITCLQFE----------DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGV 56

Query: 84  ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS 143
            +L  Y  G +LV+GS+   V V    I      +  +    +    D V  +    I++
Sbjct: 57  WALK-YAHGGILVSGSTDRTVRVWD--IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113

Query: 144 ASMDKTMMIWQPEKTTGIW----MNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAF 199
            S D T+ +W+  K + +      +   +   +     ++ G       S+      G  
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 200 HLWRNVGVDI-----DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKN 254
            +  +    +        +   + SGH   +    +       +S S D T R++     
Sbjct: 174 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 233

Query: 255 VASLMGENSWHEVARPQVHGHDINC 279
                 +     V   ++    +  
Sbjct: 234 ELMYTLQGHTALVGLLRLSDKFLVS 258

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 15/118 (12%)

Query: 135 CQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG 194
             +   ++S S D T+ +W  E    + +                      D + I++  
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRV---------LEGHEELVRCIRFDNKRIVSGA 235

Query: 195 YGGAFHLWR----NVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRV 248
           Y G   +W                 +    H   V  + +      ++S SHD T  +
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.98
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.72
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.71
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.59
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.29
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.99
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.76
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.87
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.51
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.97
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.56
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.25
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.47
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.11
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.41
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.61
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.37
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.85
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.89
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.16
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.95
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	82.53
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.63

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-38  Score=269.60  Aligned_cols=256  Identities=16%  Similarity=0.242  Sum_probs=212.2

Q ss_pred             CCCCceEEEEEccCCCc--eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecc
Q 048511            2 GGLDNKIHLYRGQRTGK--FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~   78 (351)
                      |+ ||.|+|||+.....  ........+|.+.|++|+|+        +++++|++++.||+|++||+....... .....
T Consensus        69 g~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s--------~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  139 (337)
T d1gxra_          69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC--------TTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             EE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc--------CCCCEEEEeeccccccccccccccccccccccc
Confidence            44 89999999976221  12334456899999999999        889999999999999999997654332 22334


Q ss_pred             cccceeeeEeeecCCeEEecCCceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           79 YRKEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                      +...+..+.+++++..+++++.+..+.++        ....+|...|.+++|+      +++..      +++++.|+.|
T Consensus       140 ~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s------~~~~~------~~~~~~d~~v  207 (337)
T d1gxra_         140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS------NDGTK------LWTGGLDNTV  207 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE------EEEEETTSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc------ccccc------cccccccccc
Confidence            45677888999999999998888777544        3466789999999999      78888      9999999999


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      ++||+++  +..+..+      .+...|.+++|+|+++++++++.|+.+++||++..+      ......|...|++++|
T Consensus       208 ~i~d~~~--~~~~~~~------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~i~~v~~  273 (337)
T d1gxra_         208 RSWDLRE--GRQLQQH------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLHLHESCVLSLKF  273 (337)
T ss_dssp             EEEETTT--TEEEEEE------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEECCCSSCEEEEEE
T ss_pred             ccccccc--ceeeccc------ccccceEEEEEcccccccceeccccccccccccccc------cccccccccccceEEE
Confidence            9999998  6666554      356789999999999999999999999999998864      3455678999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      +|++++|++++.|+.|++||+.+++          .+... .|...|++++|+|  ++++|++|+.||.|+|||+
T Consensus       274 s~~g~~l~s~s~Dg~i~iwd~~~~~----------~~~~~-~~~~~v~~~~~s~--d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         274 AYCGKWFVSTGKDNLLNAWRTPYGA----------SIFQS-KESSSVLSCDISV--DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCC----------EEEEE-ECSSCEEEEEECT--TSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCC----------EEEEc-cCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999998876          33333 4677899999999  8999999999999999995

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.6e-38  Score=265.15  Aligned_cols=262  Identities=16%  Similarity=0.128  Sum_probs=205.3

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce-eecccccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN-TQSTYRKE   82 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~~   82 (351)
                      .++.|.+|++++ .  .....+.+|.+.|++++|+        |++++||+|+.||+|++||+.+...... ....+...
T Consensus        36 ~~~~v~i~~~~~-~--~~~~~~~~H~~~v~~~~~s--------p~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  104 (311)
T d1nr0a1          36 NGTSVYTVPVGS-L--TDTEIYTEHSHQTTVAKTS--------PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP  104 (311)
T ss_dssp             ETTEEEEEETTC-S--SCCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC
T ss_pred             eCCEEEEEECCC-C--ceeEEEcCCCCCEEEEEEe--------CCCCeEeccccCceEeeeeeeccccccccccccccCc
Confidence            356799999987 5  3445678999999999999        8899999999999999999998765433 23445678


Q ss_pred             eeeeEeeecCCeEEecCCc--eeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           83 VISLASYIEGPVLVAGSSS--YQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        83 ~~~~~~~~~~~~l~~~~~~--~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      +.+++|+++++.+++++.+  ..+.+        ...+.+|.+.|++++|+      +++.+     +|++|+.|+.|++
T Consensus       105 v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~------~~~~~-----~l~sgs~d~~i~i  173 (311)
T d1nr0a1         105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK------PSRPF-----RIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC------SSSSC-----EEEEEETTSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc------cccee-----eeccccccccccc
Confidence            8999999999988886543  22333        34577899999999999      55553     2788999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc-Cc-ccccccccccccEEEEEe
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID-NW-QPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~-~~~~~~~~~~~~v~~v~~  230 (351)
                      ||+++  +.....+.     .|...|.+++|+|+++++++++.|+.|++||+.++... .+ .......+|...|++++|
T Consensus       174 ~d~~~--~~~~~~~~-----~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  246 (311)
T d1nr0a1         174 FEGPP--FKFKSTFG-----EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW  246 (311)
T ss_dssp             EETTT--BEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred             ccccc--cccccccc-----cccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998  66665554     78889999999999999999999999999999775321 01 112334578999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc-ceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH-DINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +|++++|++|+.||.|+|||+++++          .+..+..|.. ....+.+.+  ++..|++++.||.|++||++
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~~----------~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATLK----------VEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTE----------EEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCc----------EEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999998876          3333333322 233445555  56789999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-37  Score=265.76  Aligned_cols=242  Identities=18%  Similarity=0.235  Sum_probs=201.1

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ...++|+||.+.|++|+|+        +++++||||+.||+|+|||+.+++.+..+. .+...+.+++|+|++..+++++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s--------~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWG--------TDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEE
T ss_pred             eeeEEECCCCCCEEEEEEC--------CCCCEEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeec
Confidence            4567899999999999999        889999999999999999999887665543 3466889999999999999987


Q ss_pred             CceeEEEEE------------e-----------------------------------------ccccccceEEEEecCCC
Q 048511          100 SSYQVSVES------------L-----------------------------------------LIGHEDWVYSVQWEPPS  126 (351)
Q Consensus       100 ~~~~~~~~~------------~-----------------------------------------~~~h~~~v~~l~~~p~~  126 (351)
                      .++.+..+.            .                                         ...+...+....+.   
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  193 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---  193 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC---
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccc---
Confidence            766553322            1                                         11223344555555   


Q ss_pred             CCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEccc
Q 048511          127 TAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVG  206 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~  206 (351)
                         +...+      +++++.|+.|++||+++  +..+..+.     .|...|.+++|+|++++|++++.|+.|++||++.
T Consensus       194 ---~~~~~------~~~~~~d~~v~i~d~~~--~~~~~~~~-----~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         194 ---PDTRL------FVSGACDASAKLWDVRE--GMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             ---TTSSE------EEEEETTTEEEEEETTT--TEEEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ---cccce------eEEeecCceEEEEECCC--CcEEEEEe-----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence               55666      99999999999999998  77776665     7888999999999999999999999999999987


Q ss_pred             CcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511          207 VDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK  286 (351)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (351)
                      ...   ........+...|.+++|+|++++|++|+.||.|++||+.+++          .+..+.+|...|++++|+|  
T Consensus       258 ~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~H~~~V~~l~~s~--  322 (340)
T d1tbga_         258 DQE---LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----------RAGVLAGHDNRVSCLGVTD--  322 (340)
T ss_dssp             TEE---EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECT--
T ss_pred             ccc---ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc----------EEEEEcCCCCCEEEEEEeC--
Confidence            632   1122344567789999999999999999999999999998876          6677788999999999999  


Q ss_pred             CCcEEEEecCCCeEEEEe
Q 048511          287 GNHRFVSGADEKVARVFE  304 (351)
Q Consensus       287 ~~~~l~s~~~dg~v~vw~  304 (351)
                      ++.+|++|+.||.|+|||
T Consensus       323 d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         323 DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEccCCEEEEeC
Confidence            899999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-37  Score=266.16  Aligned_cols=279  Identities=14%  Similarity=0.152  Sum_probs=213.4

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee-eccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT-QSTY   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~   79 (351)
                      +|+.||.|+|||.+. +++..+..+++|.++|++|+|+        |++++|+|++.|++|++||+.+....... ...+
T Consensus        24 ~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fs--------p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~   94 (371)
T d1k8kc_          24 ICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWA--------PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   94 (371)
T ss_dssp             EECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEE--------TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEEC--------CCCCEEEEEECCCeEEEEeecccccccccccccc
Confidence            478899999999998 8788889999999999999999        88999999999999999999876544333 2334


Q ss_pred             ccceeeeEeeecCCeEEecCCceeEEEEE------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC
Q 048511           80 RKEVISLASYIEGPVLVAGSSSYQVSVES------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD  147 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d  147 (351)
                      ...+.++.|+|+++.++++..++.+.++.            ....|...|.+++|+      |++++      |++|+.|
T Consensus        95 ~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~------p~~~~------l~s~s~D  162 (371)
T d1k8kc_          95 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH------PNSVL------LAAGSCD  162 (371)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC------TTSSE------EEEEETT
T ss_pred             cccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccc------ccccc------eeccccC
Confidence            56789999999999999998888776543            345688899999999      78888      9999999


Q ss_pred             CeEEEEeccCCCcceEE-----------EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511          148 KTMMIWQPEKTTGIWMN-----------VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  216 (351)
                      ++|++||..........           ...+.....|...|.+++|+|++++|++++.|+.|++||+..+     ..+.
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-----~~~~  237 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-----MAVA  237 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-----TEEE
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-----ccee
Confidence            99999998752111000           0011123467788999999999999999999999999999886     5577


Q ss_pred             ccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccc--ccC-------c----------------------cceE
Q 048511          217 VPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVAS--LMG-------E----------------------NSWH  265 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~--~~~-------~----------------------~~~~  265 (351)
                      .+..|..+|.+++|+|++++|++|. |+.+++|........  ...       .                      ....
T Consensus       238 ~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (371)
T d1k8kc_         238 TLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA  316 (371)
T ss_dssp             EEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred             eeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccc
Confidence            8888999999999999998887654 777777654332111  000       0                      0000


Q ss_pred             EeccccccccceeEEEEeeeCCC--cEEEEecCCCeEEEEecC
Q 048511          266 EVARPQVHGHDINCVTIIQGKGN--HRFVSGADEKVARVFEAP  306 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~dg~v~vw~~~  306 (351)
                      .......|...|+++++.+....  ..|+|+|.||.|+|||++
T Consensus       317 ~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         317 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            11112247788999999882222  468999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-35  Score=249.68  Aligned_cols=248  Identities=15%  Similarity=0.093  Sum_probs=191.2

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      .....++||.++|++|+|+        +++++|+||+.||+|++||+.+++........+...+.+++|++++.+++++.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s--------~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~   74 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSS--------ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW   74 (299)
T ss_dssp             EEEEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             ccceEcCCCCCCcEEEEEC--------CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc
Confidence            3567899999999999999        88999999999999999999988877666556677889999999998766644


Q ss_pred             CceeEEEEEe-----------cccc-------------------------------------ccceEEEEecCCCCCCCC
Q 048511          100 SSYQVSVESL-----------LIGH-------------------------------------EDWVYSVQWEPPSTAPSD  131 (351)
Q Consensus       100 ~~~~~~~~~~-----------~~~h-------------------------------------~~~v~~l~~~p~~~~~~~  131 (351)
                       +..+.++..           ...+                                     ...+.+++|+      ++
T Consensus        75 -d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s------~~  147 (299)
T d1nr0a2          75 -DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS------ND  147 (299)
T ss_dssp             -TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC------TT
T ss_pred             -eeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cc
Confidence             233322211           0011                                     2234556666      56


Q ss_pred             CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC
Q 048511          132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN  211 (351)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  211 (351)
                      +++      |++++.|+.|++||++.  +.......    ..|...|.+++|+|++++|++++.|+.|++||+.++..  
T Consensus       148 ~~~------l~~g~~dg~i~~~d~~~--~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--  213 (299)
T d1nr0a2         148 KQF------VAVGGQDSKVHVYKLSG--ASVSEVKT----IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--  213 (299)
T ss_dssp             SCE------EEEEETTSEEEEEEEET--TEEEEEEE----EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--
T ss_pred             ccc------ccccccccccccccccc--cccccccc----cccccccccccccccccccccccccccccccccccccc--
Confidence            677      99999999999999987  44333222    25678899999999999999999999999999987532  


Q ss_pred             cccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          212 WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       212 ~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                      ......+.+|...|++++|+|++++|++|+.|+.|++||++......       .......+...+.++.|.+   +.+|
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~---~~~l  283 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-------IIIKGAHAMSSVNSVIWLN---ETTI  283 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-------EEETTSSTTSCEEEEEEEE---TTEE
T ss_pred             ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcce-------EEEecCCCCCcEEEEEECC---CCEE
Confidence            13345677899999999999999999999999999999998775211       2222233445577776655   7799


Q ss_pred             EEecCCCeEEEEecC
Q 048511          292 VSGADEKVARVFEAP  306 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~  306 (351)
                      ++++.|+.|++||++
T Consensus       284 ~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         284 VSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEECC
T ss_pred             EEEeCCCEEEEEecc
Confidence            999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-36  Score=254.60  Aligned_cols=256  Identities=21%  Similarity=0.311  Sum_probs=221.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.||+|+|||+++ +  ..+.++.+|.+.|++++|+        +++.++++++.++.+.+|+......... ...+.
T Consensus        34 s~s~Dg~i~iWd~~~-~--~~~~~~~~h~~~V~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (317)
T d1vyhc1          34 SASEDATIKVWDYET-G--DFERTLKGHTDSVQDISFD--------HSGKLLASCSADMTIKLWDFQGFECIRT-MHGHD  101 (317)
T ss_dssp             EEESSSCEEEEETTT-C--CCCEEECCCSSCEEEEEEC--------TTSSEEEEEETTSCCCEEETTSSCEEEC-CCCCS
T ss_pred             EEeCCCeEEEEECCC-C--CEEEEEeCCCCcEEEEeee--------cccccccccccccccccccccccccccc-ccccc
Confidence            578999999999998 6  3567889999999999999        8899999999999999999887654433 23345


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~i  152 (351)
                      .....+.+++++..++++..++.+.++.        .+.+|...+.+++|+      +++.+      |++++.|+.|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------l~~~~~d~~v~~  169 (317)
T d1vyhc1         102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN------QDGTL------IASCSNDQTVRV  169 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC------TTSSE------EEEEETTSCEEE
T ss_pred             ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecc------cCCCE------EEEEeCCCeEEE
Confidence            6778899999999999998888776653        467789999999999      78888      999999999999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCC--------------------CCEEEEEeeCCeEEEEEcccCcccCc
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD--------------------GRSILAHGYGGAFHLWRNVGVDIDNW  212 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--------------------~~~l~~~~~dg~i~~~d~~~~~~~~~  212 (351)
                      |++..  +.....+.     .+...+.++.|+|+                    +..+++++.|+.|++||++++     
T Consensus       170 ~~~~~--~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-----  237 (317)
T d1vyhc1         170 WVVAT--KECKAELR-----EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-----  237 (317)
T ss_dssp             EETTT--CCEEEEEC-----CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-----
T ss_pred             Eeecc--ceeeEEEe-----cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-----
Confidence            99998  66665554     67777888888765                    356899999999999999987     


Q ss_pred             ccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511          213 QPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       213 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                      .++..+.+|...|.+++|+|++++|++++.||.|++||+++++          .+..+.+|...|++++|+|  ++.+|+
T Consensus       238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~h~~~V~~~~~s~--~~~~l~  305 (317)
T d1vyhc1         238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----------CMKTLNAHEHFVTSLDFHK--TAPYVV  305 (317)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC----------CCEEEECCSSCEEEEEECS--SSSCEE
T ss_pred             cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc----------EEEEEcCCCCCEEEEEEcC--CCCEEE
Confidence            5678888999999999999999999999999999999998876          5566678999999999999  899999


Q ss_pred             EecCCCeEEEEe
Q 048511          293 SGADEKVARVFE  304 (351)
Q Consensus       293 s~~~dg~v~vw~  304 (351)
                      +|+.||.|+|||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-36  Score=260.54  Aligned_cols=271  Identities=23%  Similarity=0.361  Sum_probs=209.1

Q ss_pred             CCCCceEEEEEccCCCceEEE----------------EeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEe
Q 048511            2 GGLDNKIHLYRGQRTGKFVRA----------------CELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWK   65 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~----------------~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd   65 (351)
                      |+ |++|+|||+.+ ++....                ....+|...|++|+|+        +++++|++|+.||.|++||
T Consensus        80 g~-d~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s--------~~~~~l~s~~~dg~v~i~~  149 (388)
T d1erja_          80 GC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--------PDGKFLATGAEDRLIRIWD  149 (388)
T ss_dssp             EC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEEC--------TTSSEEEEEETTSCEEEEE
T ss_pred             Ee-CCeEEEEEecc-cceEeeecccccccccccccccccccCCCCCEEEEEEC--------CCCCcceeccccccccccc
Confidence            44 89999999987 533211                1223577789999999        8899999999999999999


Q ss_pred             cCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec-------cccccceEEEEecCCCCCCCCCcccCCC
Q 048511           66 LALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL-------IGHEDWVYSVQWEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~~~~~~~~~~  138 (351)
                      ...++..... ..+...+.++.+++++..++.+..++.+.++...       ..+.....++.+.|     .++++    
T Consensus       150 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----  219 (388)
T d1erja_         150 IENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP-----GDGKY----  219 (388)
T ss_dssp             TTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS-----TTCCE----
T ss_pred             cccccccccc-ccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccC-----CCCCe----
Confidence            9887665443 3446678899999999999999988888776431       22344566677775     67888    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEe--ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCccc------
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTV--GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDID------  210 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------  210 (351)
                        |++++.|+.|++||.++  +.....+..  .....|...|.+++|+|++++|++++.|+.|++||+++....      
T Consensus       220 --l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         220 --IAAGSLDRAVRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             --EEEEETTSCEEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             --EEEEcCCCeEEEeeccc--CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence              99999999999999998  555544432  223467889999999999999999999999999999765321      


Q ss_pred             -CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee----e
Q 048511          211 -NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ----G  285 (351)
Q Consensus       211 -~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~  285 (351)
                       ..........|...|.+++|+|++++|++|+.||.|++||+++++          .+..+.+|...|+++++++    .
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~----------~~~~l~~H~~~V~~~~~~~~~~~s  365 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN----------PLLMLQGHRNSVISVAVANGSSLG  365 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECSSCTTC
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----------EEEEEeCCCCCEEEEEEecCcccC
Confidence             112233455688899999999999999999999999999998887          6667788999999998642    1


Q ss_pred             CCCcEEEEecCCCeEEEEecC
Q 048511          286 KGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       286 ~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      +++.+|++|+.||.|+||+++
T Consensus       366 pd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         366 PEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeee
Confidence            278999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-35  Score=248.68  Aligned_cols=251  Identities=24%  Similarity=0.296  Sum_probs=217.2

Q ss_pred             EEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           22 ACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        22 ~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ..+|+||.++|++|+|+        |++++|+||+.||+|+|||+.+++....+. .+...+.++.+++++..++.+...
T Consensus        10 ~~~L~GH~~~I~~l~~s--------p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFH--------PVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             SCEEECCSSCEEEEEEC--------SSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEcCCCCCeEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccc
Confidence            45789999999999999        889999999999999999999887765543 456788999999999999987766


Q ss_pred             eeEEE--------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc
Q 048511          102 YQVSV--------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH  173 (351)
Q Consensus       102 ~~~~~--------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  173 (351)
                      ..+..        ...+.+|...+.++.|+      ++++.      +++++.|+.+++||+++  +.....+.     .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~d~~~~~~~~~~--~~~~~~~~-----~  141 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIM------PNGDH------IVSASRDKTIKMWEVQT--GYCVKTFT-----G  141 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEEC------SSSSE------EEEEETTSEEEEEETTT--CCEEEEEE-----C
T ss_pred             cccccccccccccccccccccccceeeecc------CCCce------EEeeccCcceeEeeccc--ceeeeEEc-----c
Confidence            55433        34467788999999999      78888      99999999999999998  66666665     7


Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCC-------------------
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSS-------------------  234 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-------------------  234 (351)
                      +...+.+++|+|++++|++++.|+.|++|++.+.     .....+.+|...+..++|+|++                   
T Consensus       142 ~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (317)
T d1vyhc1         142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP  216 (317)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             CCCcceeeecccCCCEEEEEeCCCeEEEEeeccc-----eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccC
Confidence            7888999999999999999999999999999886     4577788888999999988753                   


Q ss_pred             -CEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhc
Q 048511          235 -DYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKT  312 (351)
Q Consensus       235 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~  312 (351)
                       .++++++.|+.|++||++++.          .+..+.+|...|++++|+|  ++.+|++|+.||.|++||+. ++.+.+
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~  284 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVSTGM----------CLMTLVGHDNWVRGVLFHS--GGKFILSCADDKTLRVWDYKNKRCMKT  284 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECS--SSSCEEEEETTTEEEEECCTTSCCCEE
T ss_pred             CceeEeccCCCEEEEEECCCCc----------EEEEEeCCCCCEEEEEECC--CCCEEEEEECCCeEEEEECCCCcEEEE
Confidence             578999999999999998876          5666778999999999999  89999999999999999987 778888


Q ss_pred             eeecc
Q 048511          313 LNHAT  317 (351)
Q Consensus       313 ~~~~~  317 (351)
                      +.+|.
T Consensus       285 ~~~h~  289 (317)
T d1vyhc1         285 LNAHE  289 (317)
T ss_dssp             EECCS
T ss_pred             EcCCC
Confidence            87765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=247.06  Aligned_cols=248  Identities=12%  Similarity=0.183  Sum_probs=207.3

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee----ecccccceeeeEeeecCCe
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT----QSTYRKEVISLASYIEGPV   94 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   94 (351)
                      .+.+.++ .|...|++|+|+        +++++|+||+ ||.|+|||+.........    ...+...+.+++|+|+++.
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs--------~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~  111 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTIS--------NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT  111 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEEC--------SSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE
T ss_pred             ceEEEEC-CCCCcEEEEEEC--------CCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE
Confidence            3555566 799999999999        8899999998 899999999876543222    2234567899999999999


Q ss_pred             EEecCCceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEE
Q 048511           95 LVAGSSSYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMN  164 (351)
Q Consensus        95 l~~~~~~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  164 (351)
                      |++++.++.+.+|.          .+..|...+.++.|+      +++.+      +++++.|+.|++||+++  +....
T Consensus       112 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~------l~s~~~d~~i~~~~~~~--~~~~~  177 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS------PDSKV------CFSCCSDGNIAVWDLHN--QTLVR  177 (337)
T ss_dssp             EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEEE
T ss_pred             EEEeecccccccccccccccccccccccccccccccccc------ccccc------ccccccccccccccccc--ccccc
Confidence            99999998887764          355688899999999      78888      99999999999999998  66555


Q ss_pred             EEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511          165 VVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       165 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      ...     .|...|.+++|++++..+++++.|+.+++||+++++     .+..+ .|...|.+++|+|++++|++++.|+
T Consensus       178 ~~~-----~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-----~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         178 QFQ-----GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEC-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc-----ccccccccccccccccccccccccccccccccccce-----eeccc-ccccceEEEEEcccccccceecccc
Confidence            444     678899999999999999999999999999998863     34443 4788999999999999999999999


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      .+++||++...          .. ....|...|++++|+|  ++++|++++.||.|++||+. ++.+..+.
T Consensus       247 ~i~i~d~~~~~----------~~-~~~~~~~~i~~v~~s~--~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         247 NVEVLHVNKPD----------KY-QLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             CEEEEETTSSC----------EE-EECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccc----------cc-cccccccccceEEECC--CCCEEEEEeCCCeEEEEECCCCCEEEEcc
Confidence            99999998776          22 2346888899999999  89999999999999999987 66655544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-34  Score=249.21  Aligned_cols=285  Identities=18%  Similarity=0.209  Sum_probs=211.8

Q ss_pred             CCCceEEEEEccCCCce-EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec----
Q 048511            3 GLDNKIHLYRGQRTGKF-VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS----   77 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----   77 (351)
                      ..++.+.+|+......+ ..+....+|.+.|+||+|+        ++|++||+|+ |++|+|||+.+++.......    
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs--------~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~  105 (388)
T d1erja_          35 QTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS--------NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA  105 (388)
T ss_dssp             ECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEEC--------TTSSEEEEEC-BSCEEEEETTTCCEEEEECC----
T ss_pred             CCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEEC--------CCCCEEEEEe-CCeEEEEEecccceEeeecccccc
Confidence            45778889997752322 2233344799999999999        8899999987 89999999988766543321    


Q ss_pred             -------------ccccceeeeEeeecCCeEEecCCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccC
Q 048511           78 -------------TYRKEVISLASYIEGPVLVAGSSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQ  136 (351)
Q Consensus        78 -------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~  136 (351)
                                   .+...+.+++|++++++|++++.++.++++.        ...+|...|.++.++      +++..  
T Consensus       106 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~~--  177 (388)
T d1erja_         106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF------PSGDK--  177 (388)
T ss_dssp             -------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC------TTSSE--
T ss_pred             cccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccc------ccccc--
Confidence                         1244578999999999999999999887654        356799999999999      77888  


Q ss_pred             CCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccC--cc
Q 048511          137 QPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDN--WQ  213 (351)
Q Consensus       137 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~  213 (351)
                          +++++.++.+++||.+.  ........     .+. ...++.+. +++++|++++.|+.|++||.+++....  ..
T Consensus       178 ----~~~~~~~~~i~~~d~~~--~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~  245 (388)
T d1erja_         178 ----LVSGSGDRTVRIWDLRT--GQCSLTLS-----IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS  245 (388)
T ss_dssp             ----EEEEETTSEEEEEETTT--TEEEEEEE-----CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred             ----ccccccceeeeeeeccc--cccccccc-----ccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc
Confidence                99999999999999997  55544443     333 34455554 578999999999999999998763210  01


Q ss_pred             cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccccc--CccceEEeccccccccceeEEEEeeeCCCcEE
Q 048511          214 PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLM--GENSWHEVARPQVHGHDINCVTIIQGKGNHRF  291 (351)
Q Consensus       214 ~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  291 (351)
                      ......+|...|++++|+|++++|++++.|+.|++||++.......  .............|...|++++|+|  ++.+|
T Consensus       246 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l  323 (388)
T d1erja_         246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYI  323 (388)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG--GGCEE
T ss_pred             ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC--CCCEE
Confidence            1223456889999999999999999999999999999987653210  0011122333446778899999999  89999


Q ss_pred             EEecCCCeEEEEecC-chhhhceeeccc
Q 048511          292 VSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       292 ~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      ++|+.||.|++||+. ++.+.++++|.+
T Consensus       324 ~sg~~dg~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         324 LSGSKDRGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEeCCCC
Confidence            999999999999987 888888887754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-34  Score=243.13  Aligned_cols=260  Identities=14%  Similarity=0.145  Sum_probs=194.1

Q ss_pred             eEEEEEccCCCceEEEEeeeecC-CceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee-------cc
Q 048511            7 KIHLYRGQRTGKFVRACELKGHT-DWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ-------ST   78 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~-------~~   78 (351)
                      .|+.|+... .+...+..+.+|. ..|++++|+    |.  .++.+|++|+.||+|+|||+..........       ..
T Consensus        41 ~i~~~~~~~-~~~~~~~~~~gh~~~~v~~v~fs----P~--~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  113 (325)
T d1pgua1          41 FVRCLDDGD-SKVPPVVQFTGHGSSVVTTVKFS----PI--KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV  113 (325)
T ss_dssp             EEEECCSSC-CSSCSEEEECTTTTSCEEEEEEC----SS--TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred             EEEEEeCCC-CCccceEEEeCCCCCCEEEEEEe----eC--CCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccccc
Confidence            456676555 4445566778875 689999999    43  467899999999999999998765543322       22


Q ss_pred             cccceeeeEeeecCCeEEecCC--ceeE--------EEEEeccccccceEEEEecCCCCCCCCCc-ccCCCceeEEeecC
Q 048511           79 YRKEVISLASYIEGPVLVAGSS--SYQV--------SVESLLIGHEDWVYSVQWEPPSTAPSDGV-SCQQPSSILSASMD  147 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~--~~~~--------~~~~~~~~h~~~v~~l~~~p~~~~~~~~~-~~~~~~~l~s~~~d  147 (351)
                      +...+.++.|+++++.+++++.  +..+        +....+.+|...|.+++|+|      ++. +      +++++.|
T Consensus       114 ~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~~~~~------~~~~~~d  181 (325)
T d1pgua1         114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ------SRPMR------SMTVGDD  181 (325)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS------SSSCE------EEEEETT
T ss_pred             ccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccc------cccce------EEEeecc
Confidence            3556889999999998876532  3222        23456788999999999994      443 4      7789999


Q ss_pred             CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC-CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEE
Q 048511          148 KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD-GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVM  226 (351)
Q Consensus       148 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~  226 (351)
                      +.|++||.+.  .+......  ....+...|.+++|+|+ +.++++++.|+.|++||++++     +.+..+.+|...+.
T Consensus       182 ~~v~~~d~~~--~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-----~~~~~l~~~~~~v~  252 (325)
T d1pgua1         182 GSVVFYQGPP--FKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKYIEDDQEPVQ  252 (325)
T ss_dssp             TEEEEEETTT--BEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-----CEEEECCBTTBCCC
T ss_pred             cccccccccc--cccceecc--cccCCCCccEEeeeccccceeccccccccceeeeeeccc-----cccccccccccccc
Confidence            9999999987  44444332  23467788999999996 678999999999999999887     55778888888777


Q ss_pred             EEEee---cCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccc--cceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          227 DISWS---RSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHG--HDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       227 ~v~~s---p~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      ++.|+   |++++|++++.|+.|+|||+++++          .+..+..|.  ..+..+++.+. ++.+|++++.||.|+
T Consensus       253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~  321 (325)
T d1pgua1         253 GGIFALSWLDSQKFATVGADATIRVWDVTTSK----------CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN  321 (325)
T ss_dssp             SCEEEEEESSSSEEEEEETTSEEEEEETTTTE----------EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred             cceeeeeccCCCEEEEEeCCCeEEEEECCCCC----------EEEEEEecCCcccCeEEEEEEC-CCCEEEEEECCCEEE
Confidence            66666   688999999999999999998876          333333333  33444555441 245889999999999


Q ss_pred             EEec
Q 048511          302 VFEA  305 (351)
Q Consensus       302 vw~~  305 (351)
                      +||+
T Consensus       322 vwdl  325 (325)
T d1pgua1         322 FYEL  325 (325)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9995

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.2e-34  Score=239.11  Aligned_cols=252  Identities=10%  Similarity=0.092  Sum_probs=206.5

Q ss_pred             ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE
Q 048511           27 GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV  106 (351)
Q Consensus        27 ~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (351)
                      .+.+.+..++++        |+++.|+.++ ++.|.+|++.+....... ..+...+.+++|+|+|++|++++.++.+++
T Consensus        15 ~~r~~~~~~a~~--------~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i~i   84 (311)
T d1nr0a1          15 TARGTAVVLGNT--------PAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRI   84 (311)
T ss_dssp             CCTTCCCCCEEC--------TTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEEc--------CCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCCCCeEeccccCceEee
Confidence            345567788999        8899999886 667999999877655543 456778999999999999999999999987


Q ss_pred             EE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec--CCeEEEEeccCCCcceEEEEEecccccc
Q 048511          107 ES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM--DKTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       107 ~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                      |.          .+.+|..+|.+++|+      +++++      |++++.  +..+++|++++  ++....+     ..|
T Consensus        85 wd~~~~~~~~~~~~~~~~~~v~~v~~s------~d~~~------l~~~~~~~~~~~~v~~~~~--~~~~~~l-----~~h  145 (311)
T d1nr0a1          85 WDTTQTTHILKTTIPVFSGPVKDISWD------SESKR------IAAVGEGRERFGHVFLFDT--GTSNGNL-----TGQ  145 (311)
T ss_dssp             EESSSTTCCEEEEEECSSSCEEEEEEC------TTSCE------EEEEECCSSCSEEEEETTT--CCBCBCC-----CCC
T ss_pred             eeeeccccccccccccccCcccccccc------ccccc------ccccccccccccccccccc--ccccccc-----ccc
Confidence            75          356789999999999      78888      888875  56699999998  5544443     378


Q ss_pred             ccceEEEEEcCCCCE-EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          175 ALGFYGGHWSPDGRS-ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      ...|.+++|+|++++ +++|+.|+.|++||+++.     +....+..|...|+++.|+|++++|++++.|+.|++||..+
T Consensus       146 ~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccceeeeccccccccccccccccc-----ccccccccccccccccccCcccccccccccccccccccccc
Confidence            889999999999885 788999999999999986     55777888999999999999999999999999999999987


Q ss_pred             ccccccCccceE-EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeeccc
Q 048511          254 NVASLMGENSWH-EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       254 ~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      .....    .+. ......+|...|++++|+|  ++++|++|+.||.|+|||+. ++.++++..+..
T Consensus       221 ~~~~~----~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         221 GTKTG----VFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             CCEEE----ECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ccccc----cccccccccccccccccccccCC--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence            75211    111 1122346888999999999  89999999999999999987 777777766543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-33  Score=241.52  Aligned_cols=242  Identities=13%  Similarity=0.111  Sum_probs=196.1

Q ss_pred             CCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeecccccceeeeEeeecCCeEEecCCceeEEEE
Q 048511           29 TDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE  107 (351)
Q Consensus        29 ~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  107 (351)
                      .++|+|++|+        +++++||+|+.|+.|+|||+.+++... .....+...+.+++|+|++++|++++.++.+++|
T Consensus         7 ~~pIt~~~~s--------~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           7 VEPISCHAWN--------KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   78 (371)
T ss_dssp             SSCCCEEEEC--------TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCCeEEEEEC--------CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence            5789999999        889999999999999999998765432 2234567789999999999999999988888776


Q ss_pred             Ee----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccc
Q 048511          108 SL----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG  177 (351)
Q Consensus       108 ~~----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (351)
                      ..          +.+|...|.+++|+      |+++.      |++++.|+.|++|++...........   ....+...
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~------p~~~~------l~~~s~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~  143 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWA------PNEKK------FAVGSGSRVISICYFEQENDWWVCKH---IKKPIRST  143 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEEC------TTSSE------EEEEETTSSEEEEEEETTTTEEEEEE---ECTTCCSC
T ss_pred             eecccccccccccccccccccccccc------ccccc------ceeecccCcceeeeeecccccccccc---cccccccc
Confidence            53          45788899999999      78888      99999999999999987433322222   13467788


Q ss_pred             eEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccC-------------cccccccccccccEEEEEeecCCCEEEEEeCCC
Q 048511          178 FYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDN-------------WQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ  244 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------------~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg  244 (351)
                      |.+++|+|++++|++++.|+.|++||........             ..+......|...|.+++|+|++++|++++.|+
T Consensus       144 v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~  223 (371)
T d1k8kc_         144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS  223 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT
T ss_pred             cccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC
Confidence            9999999999999999999999999986543210             123345567888999999999999999999999


Q ss_pred             cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          245 TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       245 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .|++||+..+.          .+..+..|..+|.+++|+|  ++.+|++|+ |+.+++|...
T Consensus       224 ~i~iwd~~~~~----------~~~~~~~~~~~v~s~~fs~--d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         224 TVCLADADKKM----------AVATLASETLPLLAVTFIT--ESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEEEEEGGGTT----------EEEEEECSSCCEEEEEEEE--TTEEEEEET-TSSCEEEEEE
T ss_pred             cceEEeeeccc----------ceeeeecccccceeeeecC--CCCEEEEEc-CCceEEEEee
Confidence            99999998776          5556667888999999999  888887765 6666666543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=234.42  Aligned_cols=251  Identities=20%  Similarity=0.252  Sum_probs=184.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY-   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-   79 (351)
                      ||+.||+|+|||+.+ +  +++.++.+|.+.|++|+|+        ++ .+|++|+.|++|++|++............. 
T Consensus        28 tgs~Dg~i~vWd~~~-~--~~~~~l~~H~~~V~~l~~s--------~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~   95 (355)
T d1nexb2          28 TGADDKMIRVYDSIN-K--KFLLQLSGHDGGVWALKYA--------HG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNS   95 (355)
T ss_dssp             EEETTTEEEEEETTT-T--EEEEEEECCSSCEEEEEEE--------TT-TEEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             EEeCCCeEEEEECCC-C--cEEEEEECCCCCEEEEEEc--------CC-CEEEEEecccccccccccccccccccccccc
Confidence            588999999999998 7  5678999999999999999        54 589999999999999998765443322211 


Q ss_pred             ccceeeeEeeecCCeEEecCC-----------------------------------------------------------
Q 048511           80 RKEVISLASYIEGPVLVAGSS-----------------------------------------------------------  100 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~-----------------------------------------------------------  100 (351)
                      ........+.+++..++.+..                                                           
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV  175 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEE
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceee
Confidence            111222233333334443333                                                           


Q ss_pred             ----ceeEEEE--------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511          101 ----SYQVSVE--------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV  168 (351)
Q Consensus       101 ----~~~~~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  168 (351)
                          +..+..+        ....++...+.++.|+      +++..      +++++.|+.|++||+++  +..+..+. 
T Consensus       176 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~d~~i~i~d~~~--~~~~~~~~-  240 (355)
T d1nexb2         176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD------HERKR------CISASMDTTIRIWDLEN--GELMYTLQ-  240 (355)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE------TTTTE------EEEEETTSCEEEEETTT--CCEEEEEC-
T ss_pred             eecccceeeeeecccccceeeeecccccccccccc------cccee------eecccccceEEeeeccc--cccccccc-
Confidence                3333222        1234566677788888      67777      99999999999999998  77666665 


Q ss_pred             ccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEE-EeecCCCEEEEEeCCCcEE
Q 048511          169 GELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDI-SWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       169 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~s~~~dg~i~  247 (351)
                          .|...|.+++++  +++|++++.||.|++||+++..       ..+..|...+..+ .+++++.+|++| .|+.|+
T Consensus       241 ----~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~  306 (355)
T d1nexb2         241 ----GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS-------RKFSYHHTNLSAITTFYVSDNILVSG-SENQFN  306 (355)
T ss_dssp             ----CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC-------EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred             ----cccccccccccc--cceeeeeecccccccccccccc-------eecccccCCceEEEEEcCCCCEEEEE-eCCEEE
Confidence                788899999986  4789999999999999998752       3445566666665 456677766665 589999


Q ss_pred             EEcCCCccccccCccceEEe-ccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEec
Q 048511          248 VFAPWKNVASLMGENSWHEV-ARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEA  305 (351)
Q Consensus       248 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~  305 (351)
                      |||+++++          .+ ..+.+|...|++++|+|   ..++++++.||.++||.+
T Consensus       307 vwd~~tg~----------~~~~~~~~~~~~V~~v~~~~---~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         307 IYNLRSGK----------LVHANILKDADQIWSVNFKG---KTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEETTTCC----------BCCSCTTTTCSEEEEEEEET---TEEEEEEESSSCEEEEEE
T ss_pred             EEECCCCC----------EEEEEecCCCCCEEEEEEcC---CeEEEEEECCCcEEEEEE
Confidence            99999887          33 34567888999999988   468889999998776643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-32  Score=235.73  Aligned_cols=278  Identities=13%  Similarity=0.073  Sum_probs=186.1

Q ss_pred             EEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccce----eec-ccccceeeeE---ee---
Q 048511           21 RACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSAN----TQS-TYRKEVISLA---SY---   89 (351)
Q Consensus        21 ~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~----~~~-~~~~~~~~~~---~~---   89 (351)
                      .....++|.+.|++|+++          +++|+|+|.|++|+|||..+......    ... .+...+..+.   ..   
T Consensus         6 ~~~~~~~H~~~I~~v~~~----------~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSAC----------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD   75 (393)
T ss_dssp             EEEESSCSSSCEEEEEEC----------SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             eeecCCcccCccEEEEEe----------CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccC
Confidence            345678999999999988          46999999999999999865542111    000 0111111111   11   


Q ss_pred             -ecCCeEEecCCceeEEEEEec------------------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeE
Q 048511           90 -IEGPVLVAGSSSYQVSVESLL------------------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTM  150 (351)
Q Consensus        90 -~~~~~l~~~~~~~~~~~~~~~------------------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i  150 (351)
                       .++..+++++.++.+.++...                  ..+...+..++|.+.... ..+.+      +++++.|+.+
T Consensus        76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~dg~i  148 (393)
T d1sq9a_          76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHR------LVATDVKGTT  148 (393)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEE------EEEEETTSCE
T ss_pred             CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCc-ccccE------EEEEcCCCcE
Confidence             123355566666666665421                  123445777777743211 22455      8999999999


Q ss_pred             EEEeccCCCc-----------ceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcc-cCccccccc
Q 048511          151 MIWQPEKTTG-----------IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDI-DNWQPQKVP  218 (351)
Q Consensus       151 ~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~  218 (351)
                      ++||+.....           .............+...+.+++|+|++ +|++|+.|++|++||+.+++. ..+.....+
T Consensus       149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            9999864110           011111222233455668899999987 889999999999999987642 122344566


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCc---EEEEcCCCcccccc---CccceEEeccccccccceeEEEEeeeCCCcEEE
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQT---TRVFAPWKNVASLM---GENSWHEVARPQVHGHDINCVTIIQGKGNHRFV  292 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~---i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  292 (351)
                      .+|...|++++|+|++++|++|+.|++   |++||++++.....   ..........+.+|...|++++|+|  ++++|+
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp--d~~~l~  305 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLC  305 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS--SSSEEE
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC--CCCeeE
Confidence            789999999999999999999998874   99999988763210   0011122334558999999999999  999999


Q ss_pred             EecCCCeEEEEecC-chhhhceeeccc
Q 048511          293 SGADEKVARVFEAP-LSFLKTLNHATF  318 (351)
Q Consensus       293 s~~~dg~v~vw~~~-~~~~~~~~~~~~  318 (351)
                      +|+.|++|+|||+. ++++.+|++|..
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             EECCCCEEEEEECCCCCEEEEECCcCC
Confidence            99999999999987 889999988764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-31  Score=226.39  Aligned_cols=217  Identities=15%  Similarity=0.216  Sum_probs=178.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec---
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS---   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---   77 (351)
                      ||+.||+|+|||+.+ +  ..+..+.+|...|++++|+        +++.++++++.|+.+++|+............   
T Consensus        72 sgs~Dg~v~iWd~~~-~--~~~~~~~~~~~~v~~v~~~--------~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  140 (340)
T d1tbga_          72 SASQDGKLIIWDSYT-T--NKVHAIPLRSSWVMTCAYA--------PSGNYVACGGLDNICSIYNLKTREGNVRVSRELA  140 (340)
T ss_dssp             EEETTTEEEEEETTT-T--EEEEEEECSCSCEEEEEEC--------TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEEC
T ss_pred             EEECCCceeeeeccc-c--eeEEEEecccccEEeeEee--------ccceeeeeecccceeecccccccccccccceecc
Confidence            578999999999998 6  5677889999999999999        8899999999999999999765533211100   


Q ss_pred             cc-----------------------------------------ccceeeeEeeecCCeEEecCCceeEEEE--------E
Q 048511           78 TY-----------------------------------------RKEVISLASYIEGPVLVAGSSSYQVSVE--------S  108 (351)
Q Consensus        78 ~~-----------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~  108 (351)
                      .+                                         ...+....+.+.+..++++..++.+.++        .
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~  220 (340)
T d1tbga_         141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEE
Confidence            00                                         1223344455566777777777777654        3


Q ss_pred             eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCC
Q 048511          109 LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR  188 (351)
Q Consensus       109 ~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  188 (351)
                      .+.+|...|++++|+      +++++      |++|+.|+.|++||++.  ......+.   ...+...|.+++|+|+++
T Consensus       221 ~~~~h~~~i~~v~~~------p~~~~------l~s~s~d~~i~~~~~~~--~~~~~~~~---~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         221 TFTGHESDINAICFF------PNGNA------FATGSDDATCRLFDLRA--DQELMTYS---HDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             EECCCSSCEEEEEEC------TTSSE------EEEEETTSCEEEEETTT--TEEEEEEC---CTTCCSCEEEEEECSSSC
T ss_pred             EEeCCCCCeEEEEEC------CCCCE------EEEEeCCCeEEEEeecc--cccccccc---cccccCceEEEEECCCCC
Confidence            567899999999999      78888      99999999999999998  55544443   335667899999999999


Q ss_pred             EEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          189 SILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       189 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      +|++|+.||.|++||+.++     +++..+.+|.+.|++++|+|++++|++|+.||.|+|||
T Consensus       284 ~l~~g~~dg~i~iwd~~~~-----~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEECCCEEEEEECCCC-----cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999886     56888999999999999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-31  Score=218.86  Aligned_cols=253  Identities=17%  Similarity=0.228  Sum_probs=190.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.||+|+|||+.+ +  +++.++.+|.+.|++|+|.          +++|+||+.|+.|++|++..+.........  
T Consensus        30 sgs~Dg~i~vWd~~~-~--~~~~~l~~H~~~V~~v~~~----------~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~--   94 (293)
T d1p22a2          30 SGLRDNTIKIWDKNT-L--ECKRILTGHTGSVLCLQYD----------ERVIITGSSDSTVRVWDVNTGEMLNTLIHH--   94 (293)
T ss_dssp             EEESSSCEEEEESSS-C--CEEEEECCCSSCEEEEECC----------SSEEEEEETTSCEEEEESSSCCEEEEECCC--
T ss_pred             EEeCCCeEEEEECCC-C--cEEEEEecCCCCEeeeecc----------cceeeccccccccccccccccccccccccc--
Confidence            588999999999998 6  4677899999999999887          569999999999999999887654433322  


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEE-----------EEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCe
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSV-----------ESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKT  149 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~  149 (351)
                       .............++.+...+.+.+           ...+..|...|.++.+.+        ..      +++++.|+.
T Consensus        95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~------~~~~s~d~~  159 (293)
T d1p22a2          95 -CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--------KY------IVSASGDRT  159 (293)
T ss_dssp             -CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--------TE------EEEEETTSE
T ss_pred             -ccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--------cc------cccccCCCc
Confidence             2223334444555555554444433           334566778888887762        34      889999999


Q ss_pred             EEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEE
Q 048511          150 MMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDIS  229 (351)
Q Consensus       150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~  229 (351)
                      |++||+++  ++.+..+.     .+...+..+.++  +..+++++.|+.|++||+++.     ..+....+|...+..  
T Consensus       160 i~~~d~~~--~~~~~~~~-----~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~--  223 (293)
T d1p22a2         160 IKVWNTST--CEFVRTLN-----GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRC--  223 (293)
T ss_dssp             EEEEETTT--CCEEEEEE-----CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEE--
T ss_pred             eeeecCCC--CcEEEEEc-----ccccccccccCC--CCeEEEecCCCEEEEEecccc-----eeeeeecccceeeee--
Confidence            99999998  77766665     666677777764  568999999999999999886     456777778877764  


Q ss_pred             eecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEe
Q 048511          230 WSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFE  304 (351)
Q Consensus       230 ~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~  304 (351)
                      +++++.+|++++.||.|++||+........ ......+..+.+|...|++++|+    +.+|++|+.||.|+|||
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~H~~~V~~v~~d----~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQFD----EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEEC----SSCEEECCSSSEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCccccc-cCCceeeEEecCCCCCEEEEEEc----CCEEEEEecCCEEEEeC
Confidence            566788999999999999999865432110 11122455667899999999984    46799999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=221.35  Aligned_cols=258  Identities=18%  Similarity=0.288  Sum_probs=186.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc-
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY-   79 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-   79 (351)
                      ||+.||+|+|||+.+ +  +++.++.+|.+.|++++|+        +  ++|++++.|+++++|+.............. 
T Consensus        32 sgs~Dg~i~vWd~~~-~--~~~~~~~~h~~~V~~v~~~--------~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          32 SGSDDNTLKVWSAVT-G--KCLRTLVGHTGGVWSSQMR--------D--NIIISGSTDRTLKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             EEETTSCEEEEETTT-C--CEEEECCCCSSCEEEEEEE--------T--TEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEeCCCeEEEEECCC-C--CEEEEEeCCCCCEEEEEeC--------C--Cccccceecccccccccccccceecccccce
Confidence            588999999999998 7  4577899999999999999        4  499999999999999987654332211110 


Q ss_pred             ------------------------------------ccceeeeEeeecCCeEEecCCceeEEEE--------Eecccccc
Q 048511           80 ------------------------------------RKEVISLASYIEGPVLVAGSSSYQVSVE--------SLLIGHED  115 (351)
Q Consensus        80 ------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~h~~  115 (351)
                                                          ...............++.+..++.+.++        ..+.+|..
T Consensus        99 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  178 (342)
T d2ovrb2          99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  178 (342)
T ss_dssp             CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             eEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence                                                0000011122333445555555555443        34556766


Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                      .+..+.+        ++..      |++++.||.|++||++.  +..+..+.     .|...+.++++++  ++|++++.
T Consensus       179 ~~~~~~~--------~~~~------l~s~~~dg~i~~~d~~~--~~~~~~~~-----~~~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         179 RVYSLQF--------DGIH------VVSGSLDTSIRVWDVET--GNCIHTLT-----GHQSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             CEEEEEE--------CSSE------EEEEETTSCEEEEETTT--CCEEEEEC-----CCCSCEEEEEEET--TEEEEEET
T ss_pred             ccccccC--------CCCE------EEEEeCCCeEEEeeccc--ceeeeEec-----ccccceeEEecCC--CEEEEEcC
Confidence            6666554        4566      99999999999999998  66666555     6777888887754  69999999


Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEec--ccccc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVA--RPQVH  273 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~  273 (351)
                      |+.|++||+...+..  ..+.....|...+.++.++  ++++++|+.||.|++||+++++.       .+.+.  ...+|
T Consensus       236 d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~-------i~~~~~~~~~~~  304 (342)
T d2ovrb2         236 DSTVKIWDIKTGQCL--QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF-------IRNLVTLESGGS  304 (342)
T ss_dssp             TSCEEEEETTTCCEE--EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE-------EEEEEECTTGGG
T ss_pred             CCEEEEEeccccccc--ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCE-------EEEEecccCCCC
Confidence            999999999876321  2223334466677766665  56999999999999999998872       12221  23367


Q ss_pred             ccceeEEEEeeeCCCcEEEEecCCCe----EEEEecCc
Q 048511          274 GHDINCVTIIQGKGNHRFVSGADEKV----ARVFEAPL  307 (351)
Q Consensus       274 ~~~i~~~~~~~~~~~~~l~s~~~dg~----v~vw~~~~  307 (351)
                      ...|++++|+|  ++.+|++|+.||+    |++||++.
T Consensus       305 ~~~v~~v~~s~--~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 GGVVWRIRASN--TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCEEEEEEECS--SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEECC--CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            77899999999  8999999999985    99999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.8e-31  Score=222.28  Aligned_cols=243  Identities=13%  Similarity=0.054  Sum_probs=171.8

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ||+.||+|++||+.+ +       ..+|...|.++.++        ++ ..+++++.|++|++|++...+.        .
T Consensus        26 sgs~Dg~v~~Wd~~~-~-------~~~h~~~V~~~~~~--------~~-~~~~s~s~D~~v~~w~~~~~~~--------~   80 (287)
T d1pgua2          26 SGSYDGRIMEWSSSS-M-------HQDHSNLIVSLDNS--------KA-QEYSSISWDDTLKVNGITKHEF--------G   80 (287)
T ss_dssp             EEETTSCEEETTTTE-E-------ECCCCSCEEEEECC--------ST-TCCEEEETTTEEEETTEEEEEC--------S
T ss_pred             EEeCCCeEEEEECCC-C-------CCCCCCCEEEEEec--------CC-CeEEEEeecccccccccccccc--------c
Confidence            467788888888765 2       24688888888877        43 4577888888888887754321        1


Q ss_pred             cceeeeEeeecCCeEEecCCceeEE-------EEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecC-CeEEE
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVS-------VESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD-KTMMI  152 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d-~~i~i  152 (351)
                      ..+..+.+.+++..++.+.......       ....+. +...+.  +++      +++..      +++++.+ +.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~------~~~~~------~~v~~~~~~~v~~  145 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS--AVS------LSQNY------VAVGLEEGNTIQV  145 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE--EEE------ECSSE------EEEEETTTSCEEE
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeecc-ccceee--eee------ccCcc------eeeeccccceeee
Confidence            2344555666666666554443221       111111 122333  344      34555      7777665 57999


Q ss_pred             EeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          153 WQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      |++..  ......+    ...+...+.+++|+|++.+|++++.||.|++||+.+..    .....+.+|...|.+++|+|
T Consensus       146 ~~~~~--~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~~h~~~v~~~~~~p  215 (287)
T d1pgua2         146 FKLSD--LEVSFDL----KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE----VKTSRWAFRTSKINAISWKP  215 (287)
T ss_dssp             EETTE--EEEEEEC----SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEECCSCCCSSCEEEEEECC
T ss_pred             eeccc--cceeeee----eeccCCceeEEEeccCccccccccccccccceeecccc----cccccccccccccceeeecc
Confidence            99876  3332222    22466789999999999999999999999999998764    23445678999999999987


Q ss_pred             C----------CCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEE
Q 048511          233 S----------SDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARV  302 (351)
Q Consensus       233 ~----------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~v  302 (351)
                      .          +.+|++|+.|++|+|||++...         ..+..+.+|...|++++|++  ++ .|++++.|+.|++
T Consensus       216 ~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~---------~~~~~~~~h~~~V~~v~~~~--~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---------KIIKALNAHKDGVNNLLWET--PS-TLVSSGADACIKR  283 (287)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEESSCTT---------CCEEETTSSTTCEEEEEEEE--TT-EEEEEETTSCEEE
T ss_pred             cccccccccCCCCeeEeecCCCeEEEEECCCCC---------eEEEEeCCCCCCeEEEEECC--CC-EEEEEECCCeEEE
Confidence            4          4689999999999999997654         14555678999999999999  55 6889999999999


Q ss_pred             Eec
Q 048511          303 FEA  305 (351)
Q Consensus       303 w~~  305 (351)
                      |++
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-30  Score=226.65  Aligned_cols=250  Identities=13%  Similarity=0.072  Sum_probs=169.0

Q ss_pred             CCCCCceEEEEEccCCCc----eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee
Q 048511            1 MGGLDNKIHLYRGQRTGK----FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~   76 (351)
                      |||.|++|+|||... .+    .........|...+..+...... +....+..++++++.||.|++|++..........
T Consensus        29 S~S~D~~iriWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~  106 (393)
T d1sq9a_          29 SCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAI-ERDAFELCLVATTSFSGDLLFYRITREDETKKVI  106 (393)
T ss_dssp             EEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEE-ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEE
T ss_pred             EEECCCeEEEEECCC-CCCCcccceeEeeeeccCCceEeeeEeee-ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeee
Confidence            578899999999765 21    11122333455554433322000 0000345678899999999999987554332221


Q ss_pred             c---------ccccceeeeEeeec-----CCeEEecCCceeEEEEEe--------------------------ccccccc
Q 048511           77 S---------TYRKEVISLASYIE-----GPVLVAGSSSYQVSVESL--------------------------LIGHEDW  116 (351)
Q Consensus        77 ~---------~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~--------------------------~~~h~~~  116 (351)
                      .         ........+.+.++     +..+++++.++.+.++..                          ...+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (393)
T d1sq9a_         107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  186 (393)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCc
Confidence            1         11233445555554     456777777777766542                          1234456


Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEec-cccccccceEEEEEcCCCCEEEEEee
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVG-ELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                      +.+++|+      +++ +      |++|+.|++|+|||+++  +..+..+... .+..|...|.+++|+|++++|++|+.
T Consensus       187 ~~~v~~s------~dg-~------lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~  251 (393)
T d1sq9a_         187 ATSVDIS------ERG-L------IATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD  251 (393)
T ss_dssp             CCEEEEC------TTS-E------EEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             EEEEEEC------CCC-E------EEEEeCCCcEEEEeecc--cccccccccccccccccceEEEcccccccceeeeecC
Confidence            8899999      565 6      99999999999999998  6666655432 34578899999999999999999999


Q ss_pred             CC---eEEEEEcccCccc--------CcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccce
Q 048511          196 GG---AFHLWRNVGVDID--------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSW  264 (351)
Q Consensus       196 dg---~i~~~d~~~~~~~--------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  264 (351)
                      |+   .|++||+++++..        .......+.+|...|++++|+|++++|++++.|++|+|||+++++         
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~---------  322 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---------  322 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------
T ss_pred             CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC---------
Confidence            86   5999999876321        112233456899999999999999999999999999999999887         


Q ss_pred             EEeccccccccce
Q 048511          265 HEVARPQVHGHDI  277 (351)
Q Consensus       265 ~~~~~~~~~~~~i  277 (351)
                       .+..+.+|...|
T Consensus       323 -~~~~l~gH~~~v  334 (393)
T d1sq9a_         323 -RITTLNMHCDDI  334 (393)
T ss_dssp             -EEEEEECCGGGC
T ss_pred             -EEEEECCcCCcc
Confidence             555555665544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-28  Score=206.21  Aligned_cols=248  Identities=10%  Similarity=0.122  Sum_probs=189.5

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCC-cEEEEecCCCccc--ceeecccccceeeeEeee--cCCeEEecCCceeEE
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDK-VIRIWKLALRGSS--ANTQSTYRKEVISLASYI--EGPVLVAGSSSYQVS  105 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg-~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~  105 (351)
                      .+++++|+        ++++.|+.++.+. .|+.|+.......  ..........+.+++|+|  ++.++++++.++.++
T Consensus        19 ~~t~l~~~--------~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~   90 (325)
T d1pgua1          19 FTTHLSYD--------PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   90 (325)
T ss_dssp             CCCCCEEE--------TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CeEEEEEC--------CCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence            56789999        8899998876554 3566765443322  222222345788999997  567999999999998


Q ss_pred             EEEe----------------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec--CCeEEEEeccCCCcceEEEEE
Q 048511          106 VESL----------------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM--DKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus       106 ~~~~----------------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      +|..                +..|.++|.+++|+      ++++.      +++++.  ++.+++|+..+  +..+..+.
T Consensus        91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s------~~~~~------l~~~~~~~~~~~~~~~~~~--~~~~~~~~  156 (325)
T d1pgua1          91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD------FEGRR------LCVVGEGRDNFGVFISWDS--GNSLGEVS  156 (325)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC------TTSSE------EEEEECCSSCSEEEEETTT--CCEEEECC
T ss_pred             EeeecCCcceeeeecccccccccccCcEEEEEEC------CCCCc------cceeeccccceEEEEeecc--cccceeee
Confidence            8753                34577889999999      78887      777654  77899999988  66666554


Q ss_pred             eccccccccceEEEEEcCCCCE-EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecC-CCEEEEEeCCCc
Q 048511          168 VGELSHSALGFYGGHWSPDGRS-ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRS-SDYLLSVSHDQT  245 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~s~~~dg~  245 (351)
                           .|...|.+++|+|++.+ +++++.|+.+++||....+..  ........|...|++++|+|+ +.+|++++.|+.
T Consensus       157 -----~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~  229 (325)
T d1pgua1         157 -----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS--ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  229 (325)
T ss_dssp             -----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE--EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             -----ecccccccccccccccceEEEeecccccccccccccccc--eecccccCCCCccEEeeeccccceeccccccccc
Confidence                 78899999999999875 678889999999998765321  223445678889999999996 688999999999


Q ss_pred             EEEEcCCCccccccCccceEEeccccccccceeEEEEeee-CCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          246 TRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG-KGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       246 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      |++||+++++          .+..+.+|...+..+.|+.. .++.+|++++.|+.|+|||++ ++.++.+..+.
T Consensus       230 i~iwd~~~~~----------~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         230 ISCFDGKSGE----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EEEEETTTCC----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             eeeeeecccc----------ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            9999998877          55566677777766666521 268899999999999999987 77776665443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-28  Score=204.28  Aligned_cols=252  Identities=16%  Similarity=0.281  Sum_probs=178.7

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      +++...|+||.+.|.+ +++        ++|++||||+.||+|+|||+.+++.+..+. .+...+.++.++++  .++++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~--------~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~   73 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQ--------FCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISG   73 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEE--------EETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEE
T ss_pred             CCcCEEECCcCCceEE-EEE--------ECCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccc
Confidence            4566789999999864 355        458899999999999999999887765543 45667888888764  78887


Q ss_pred             CCceeEEEEEec--------cccccceEEEEecCCC-----------------C---------------CCCCCcccCCC
Q 048511           99 SSSYQVSVESLL--------IGHEDWVYSVQWEPPS-----------------T---------------APSDGVSCQQP  138 (351)
Q Consensus        99 ~~~~~~~~~~~~--------~~h~~~v~~l~~~p~~-----------------~---------------~~~~~~~~~~~  138 (351)
                      +.++.+..+...        ..+...+......+..                 .               .......    
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR----  149 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSC----
T ss_pred             eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccce----
Confidence            777766544320        0111111111000000                 0               0022333    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                        +++++.|+.|++||++.  ...+..+.     .|...+..+  .+++.++++++.||.|++||++..     +++..+
T Consensus       150 --~~~~~~d~~i~~~d~~~--~~~~~~~~-----~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~-----~~~~~~  213 (342)
T d2ovrb2         150 --VVSGAYDFMVKVWDPET--ETCLHTLQ-----GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG-----NCIHTL  213 (342)
T ss_dssp             --EEEEETTSCEEEEEGGG--TEEEEEEC-----CCSSCEEEE--EECSSEEEEEETTSCEEEEETTTC-----CEEEEE
T ss_pred             --eeeecCCCeEEEeeccc--ceeeEEEc-----Ccccccccc--cCCCCEEEEEeCCCeEEEeecccc-----eeeeEe
Confidence              88889999999999987  66555544     555555544  457889999999999999999886     567888


Q ss_pred             ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCC
Q 048511          219 SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEK  298 (351)
Q Consensus       219 ~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg  298 (351)
                      .+|...+.++++++  ++|++++.|+.|++||+...+       ....+.....|...+.++++    ++.++++|+.||
T Consensus       214 ~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~s~s~Dg  280 (342)
T d2ovrb2         214 TGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ-------CLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDG  280 (342)
T ss_dssp             CCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC-------EEEEECSTTSCSSCEEEEEE----CSSEEEEEETTS
T ss_pred             cccccceeEEecCC--CEEEEEcCCCEEEEEeccccc-------ccccccccceeeeceeeccc----CCCeeEEEcCCC
Confidence            88999998887764  699999999999999998876       22344445556666766666    457999999999


Q ss_pred             eEEEEecC-chhhhceee
Q 048511          299 VARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       299 ~v~vw~~~-~~~~~~~~~  315 (351)
                      .|++||++ ++.++++..
T Consensus       281 ~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             EEEEEETTTCCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEec
Confidence            99999987 777776643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.6e-28  Score=205.10  Aligned_cols=270  Identities=9%  Similarity=-0.021  Sum_probs=191.7

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      +|+.||+|+|||++.......+....+|.++|++++|+    +   .++.+|++|+.|++|++|++..............
T Consensus        28 s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~----~---~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~  100 (342)
T d1yfqa_          28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI----D---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA  100 (342)
T ss_dssp             EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE----E---SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC
T ss_pred             EEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEe----C---CCCCEEEEcccccceeeeeccccccccccccccc
Confidence            57899999999998733434455556799999999999    2   2466899999999999999988776655554444


Q ss_pred             cceeeeEeeecCCeEEecCCceeEEEEEecc------------cc--ccceEEEEecCCCCCCCCCcccCCCceeEEeec
Q 048511           81 KEVISLASYIEGPVLVAGSSSYQVSVESLLI------------GH--EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM  146 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~h--~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~  146 (351)
                      .......+.++...++.++.+..+.++....            .+  ......+.+.      +.+..      +++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~  168 (342)
T d1yfqa_         101 NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD------TNSSR------LIVGMN  168 (342)
T ss_dssp             CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE------ECSSE------EEEEES
T ss_pred             ccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee------ccCCc------eeeecC
Confidence            4555666777888888888888777764311            11  1122334444      45566      999999


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEc-CCCCEEEEEeeCCeEEEEEcccCcccC----------cccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWS-PDGRSILAHGYGGAFHLWRNVGVDIDN----------WQPQ  215 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~----------~~~~  215 (351)
                      |+.|++||++...........    ......+.+..+. .++..+++++.||.+.+|++.......          ....
T Consensus       169 d~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         169 NSQVQWFRLPLCEDDNGTIEE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEE----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             CCcEEEEecccCcccceeeee----cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            999999999873322222111    1333445555554 467789999999999999986542210          0112


Q ss_pred             cccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec
Q 048511          216 KVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA  295 (351)
Q Consensus       216 ~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  295 (351)
                      .....|...|++++|+|++++|++|+.||.|+|||+++++          .+..+..+ ..+..++|++  ++.++++++
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~----------~l~~~~~~-~~~~~~~~s~--~~~~l~~a~  311 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----------KIKNFAKF-NEDSVVKIAC--SDNILCLAT  311 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EEEECCCC-SSSEEEEEEE--CSSEEEEEE
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc----------EEEEecCC-CCCEEEEEEe--CCCEEEEEE
Confidence            2334567789999999999999999999999999998876          44433222 3456788888  889999999


Q ss_pred             CCCeEEEEecC
Q 048511          296 DEKVARVFEAP  306 (351)
Q Consensus       296 ~dg~v~vw~~~  306 (351)
                      .|+.+++|..-
T Consensus       312 sdd~~~~~~~~  322 (342)
T d1yfqa_         312 SDDTFKTNAAI  322 (342)
T ss_dssp             ECTHHHHCSSS
T ss_pred             cCCcEEEeeee
Confidence            99888888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.7e-28  Score=205.22  Aligned_cols=220  Identities=13%  Similarity=0.198  Sum_probs=163.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEee-eecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccc--ceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACEL-KGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSS--ANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~--~~~~~   77 (351)
                      +|+.||+|++||+++ ++  ....+ .+|...|++++|+        +++. +++++.|+.+++|+.......  .....
T Consensus        29 s~s~Dg~v~vWd~~~-~~--~~~~~~~~h~~~v~~v~~~--------~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~   96 (299)
T d1nr0a2          29 SADAEGHINSWDIST-GI--SNRVFPDVHATMITGIKTT--------SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVAN   96 (299)
T ss_dssp             EEETTSCEEEEETTT-CC--EEECSSCSCSSCEEEEEEC--------TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EEcCCCeEEEEECCC-Cc--EEEEEcCCCCCcEEEEEee--------ccce-eecccceeeEEEeccCCccccccccccc
Confidence            578999999999998 64  34455 5799999999999        7775 556778999999997643211  00000


Q ss_pred             cc-------------------------------------ccceeeeEeeecCCeEEecCCceeEEEEEe---------cc
Q 048511           78 TY-------------------------------------RKEVISLASYIEGPVLVAGSSSYQVSVESL---------LI  111 (351)
Q Consensus        78 ~~-------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~  111 (351)
                      ..                                     .....++++++++..++++..++.+.++..         ..
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            00                                     223456677788888888888877766542         34


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEE
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSIL  191 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~  191 (351)
                      .|...|.+++|+      +++++      |++++.|+.|++||+.+  +......  .....|...|.+++|+|++++|+
T Consensus       177 ~~~~~i~~~~~~------~~~~~------l~~~~~d~~i~~~~~~~--~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         177 VHPAEITSVAFS------NNGAF------LVATDQSRKVIPYSVAN--NFELAHT--NSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             ECSSCEEEEEEC------TTSSE------EEEEETTSCEEEEEGGG--TTEESCC--CCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccc------ccccc------ccccccccccccccccc--ccccccc--ccccccccccccccccccccceE
Confidence            688899999999      78888      99999999999999987  4433222  22346788999999999999999


Q ss_pred             EEeeCCeEEEEEcccCcccCccccccccc-ccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          192 AHGYGGAFHLWRNVGVDIDNWQPQKVPSG-HFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       192 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      +++.|+.|++||+++...   ........ +...+..+.| +++++|++++.|+.|++||+.
T Consensus       241 sgs~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSD---HPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEETTCTTS---CCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCc---ceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999999987642   22223333 3456666655 566899999999999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=202.33  Aligned_cols=271  Identities=9%  Similarity=0.052  Sum_probs=187.3

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceee--cccccceeeeEeeecC-CeEE
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQ--STYRKEVISLASYIEG-PVLV   96 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~l~   96 (351)
                      +.+...++|++.|++|+|+        |++++||||+.||+|+|||+..........  ..+...+.+++|++++ ..++
T Consensus         2 ~~v~~~~~h~d~I~~l~fs--------p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~   73 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKII--------PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEE--------GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEe--------CCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEE
Confidence            4567788999999999999        889999999999999999998765433322  2456789999999875 5788


Q ss_pred             ecCCceeEEEEEecc--------c-cccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEE
Q 048511           97 AGSSSYQVSVESLLI--------G-HEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVT  167 (351)
Q Consensus        97 ~~~~~~~~~~~~~~~--------~-h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  167 (351)
                      +++.++.+.++....        . +........+.      ++...      +++++.|+.+++||++...........
T Consensus        74 sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK------YGDDK------LIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE------ETTTE------EEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             Ecccccceeeeecccccccccccccccccccccccc------ccccc------ccccccccccceeeccccccceeeecc
Confidence            888888887765422        2 22223344444      45666      999999999999999863222222111


Q ss_pred             eccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEe-ecCCCEEEEEeCCCcE
Q 048511          168 VGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW-SRSSDYLLSVSHDQTT  246 (351)
Q Consensus       168 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~s~~~dg~i  246 (351)
                       ..............+.+.+..+++++.|+.|++||+......  ........+...+....+ .+++..+++++.||.+
T Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  218 (342)
T d1yfqa_         142 -LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             -SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             -cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc--ceeeeecccccceeeeEeecCCCCEEEeecCCCeE
Confidence             111122334456677788899999999999999999776421  111122233344555554 4567889999999999


Q ss_pred             EEEcCCCccccccCccc-----eEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          247 RVFAPWKNVASLMGENS-----WHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       247 ~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .+|+.............     .........|...+++++|+|  ++.+|++|+.||.|+|||+. ++.+..+..
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             EEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC--CccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            99998665422211111     111223345667799999999  89999999999999999987 666665543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-27  Score=202.24  Aligned_cols=239  Identities=18%  Similarity=0.197  Sum_probs=182.5

Q ss_pred             EEeeeecCCce-eEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCC
Q 048511           22 ACELKGHTDWI-RSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        22 ~~~~~~h~~~V-~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      ..+|+||.+.| +|++|+          +++||||+.||+|+|||+.+++.+..+. .+...+.+++|+++ ..|++++.
T Consensus         5 ~~tL~GH~~~vitc~~~~----------~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~   72 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFE----------DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGST   72 (355)
T ss_dssp             EEEEECCSSSCEEEEEEE----------TTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEET
T ss_pred             cEEECCcCCCcEEEEEEC----------CCEEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEec
Confidence            45799998875 666665          7799999999999999999887665543 45678999999875 57888888


Q ss_pred             ceeEEEEEecc----------ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe--
Q 048511          101 SYQVSVESLLI----------GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV--  168 (351)
Q Consensus       101 ~~~~~~~~~~~----------~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--  168 (351)
                      ++.+.++....          .+........+.      +++..      +++++.|+.|++||++.  .........  
T Consensus        73 D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~d~~i~iw~~~~--~~~~~~~~~~~  138 (355)
T d1nexb2          73 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY------KNIKY------IVTGSRDNTLHVWKLPK--ESSVPDHGEEH  138 (355)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE------TTEEE------EEEEETTSEEEEEECCC-------------
T ss_pred             ccccccccccccccccccccccccccccccccc------cccce------eeeecCCCcEEEEEccC--Cceeccccccc
Confidence            88887765322          222334555666      67778      99999999999999987  222111100  


Q ss_pred             ------c----------cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          169 ------G----------ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       169 ------~----------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                            .          ....+...+  ..+.++++.++++..|+.|++||+++.     +.+....++...+.++.|+|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~  211 (355)
T d1nexb2         139 DYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQM-----KCLYILSGHTDRIYSTIYDH  211 (355)
T ss_dssp             CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEEET
T ss_pred             eeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccc-----cceeeeeccccccccccccc
Confidence                  0          001122222  234567889999999999999999886     45667777888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPL  307 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~  307 (351)
                      ++.++++++.|+.|++||++++.          .+..+.+|...|+++++++    ++|++|+.||.|++||++.
T Consensus       212 ~~~~~~~~~~d~~i~i~d~~~~~----------~~~~~~~h~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         212 ERKRCISASMDTTIRIWDLENGE----------LMYTLQGHTALVGLLRLSD----KFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             TTTEEEEEETTSCEEEEETTTCC----------EEEEECCCSSCCCEEEECS----SEEEEECTTSEEEEEETTT
T ss_pred             cceeeecccccceEEeeeccccc----------ccccccccccccccccccc----ceeeeeecccccccccccc
Confidence            99999999999999999998887          5666778999999998854    6899999999999999873

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=193.20  Aligned_cols=244  Identities=15%  Similarity=0.126  Sum_probs=180.3

Q ss_pred             eEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEec
Q 048511           19 FVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        19 ~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   98 (351)
                      -+++++++||.++|++|+|+        +    |+||+.||+|++||+.+..      ..+...+.++.+++++ .++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s--------~----l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~-~~~s~   63 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVN--------P----LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQ-EYSSI   63 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETT--------T----TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTT-CCEEE
T ss_pred             cceeEEECCCCCceEEEEEC--------c----EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCC-eEEEE
Confidence            36788999999999999999        5    9999999999999987643      2345567788887655 45666


Q ss_pred             CCceeEEEEEecc-ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccc
Q 048511           99 SSSYQVSVESLLI-GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALG  177 (351)
Q Consensus        99 ~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  177 (351)
                      +.+..++++.... .....+.++.+.      +++..      +++ +.++.+.+|+...  +..+..+..      ...
T Consensus        64 s~D~~v~~w~~~~~~~~~~~~~~~~~------~~~~~------~~~-~~~~~~~~~~~~~--~~~~~~~~~------~~~  122 (287)
T d1pgua2          64 SWDDTLKVNGITKHEFGSQPKVASAN------NDGFT------AVL-TNDDDLLILQSFT--GDIIKSVRL------NSP  122 (287)
T ss_dssp             ETTTEEEETTEEEEECSSCEEEEEEC------SSSEE------EEE-ETTSEEEEEETTT--CCEEEEEEC------SSC
T ss_pred             eeccccccccccccccccceeeeeec------cCCce------EEE-eecccceeeeccc--eeeeeeccc------cce
Confidence            6677776654322 234457788888      56665      554 5566788999887  666665541      122


Q ss_pred             eEEEEEcCCCCEEEEEeeCC-eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccc
Q 048511          178 FYGGHWSPDGRSILAHGYGG-AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVA  256 (351)
Q Consensus       178 i~~i~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~  256 (351)
                        ..++++++..+++++.++ .+++|++....    ........|...+++++|+|++.+|++++.||.|++||+.++..
T Consensus       123 --~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~  196 (287)
T d1pgua2         123 --GSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV  196 (287)
T ss_dssp             --EEEEEECSSEEEEEETTTSCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             --eeeeeccCcceeeeccccceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc
Confidence              345677888888888774 79999987643    12223345778899999999999999999999999999987761


Q ss_pred             cccCccceEEeccccccccceeEEEEeee--------CCCcEEEEecCCCeEEEEecC--chhhhceeecc
Q 048511          257 SLMGENSWHEVARPQVHGHDINCVTIIQG--------KGNHRFVSGADEKVARVFEAP--LSFLKTLNHAT  317 (351)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~  317 (351)
                               ....+..|...|++++|+|.        .++.+|++|+.|+.|+|||++  ...+..+.+|.
T Consensus       197 ---------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~  258 (287)
T d1pgua2         197 ---------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK  258 (287)
T ss_dssp             ---------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSST
T ss_pred             ---------ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCC
Confidence                     33456688999999999871        246789999999999999975  34444444443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-23  Score=174.37  Aligned_cols=235  Identities=18%  Similarity=0.247  Sum_probs=174.0

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ..+.....|...|+|++|.          +++||||+.||+|+|||+.+++....+. .+...+.++.+  ++++|++++
T Consensus         6 ~~i~~~~~~~~~V~c~~~d----------~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s   72 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQYD----------DQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGS   72 (293)
T ss_dssp             CCEECCCSSCCCEEEEECC----------SSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEE
T ss_pred             EEEeccCCCCCCEEEEEEc----------CCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeeccc
Confidence            3455667788899998665          7899999999999999999887766553 45567777765  678999999


Q ss_pred             CceeEEEEEeccccc------cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc
Q 048511          100 SSYQVSVESLLIGHE------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH  173 (351)
Q Consensus       100 ~~~~~~~~~~~~~h~------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  173 (351)
                      .++.+.++....+..      .......+.      .....      ++++..++.+++||............    ...
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  136 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLR------FNNGM------MVTCSKDRSIAVWDMASPTDITLRRV----LVG  136 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEE------CCTTE------EEEEETTSCEEEEECSSSSCCEEEEE----ECC
T ss_pred             cccccccccccccccccccccccccccccc------ccccc------eeecccccceeEeecccccccccccc----ccc
Confidence            999888876533211      111122222      23345      89999999999999987332222211    235


Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCC
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      +...+..+.+.  ...+++++.|+.|++||+++.     +++..+.++...+..+.++  +.++++++.|+.|++||+++
T Consensus       137 ~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         137 HRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTC-----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEETTTC-----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             cccccccceec--ccccccccCCCceeeecCCCC-----cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc
Confidence            66777777765  457889999999999999887     5577788888888877765  56899999999999999988


Q ss_pred             ccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          254 NVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..          .+.....+...+.+  +.+  ++.+|++|+.||.|++||+.
T Consensus       208 ~~----------~~~~~~~~~~~v~~--~~~--~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         208 GA----------CLRVLEGHEELVRC--IRF--DNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             CC----------EEEEECCCSSCEEE--EEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             ce----------eeeeecccceeeee--ccc--cceEEEEEcCCCEEEEEECC
Confidence            76          45555567666655  444  67899999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.2e-24  Score=186.00  Aligned_cols=176  Identities=10%  Similarity=-0.021  Sum_probs=143.2

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC--cEEEEecCCCcccceeeccccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK--VIRIWKLALRGSSANTQSTYRK   81 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~   81 (351)
                      .+|.|++||++. +...   .+ +|...|++++|+        |++++|++++.+.  .|++||+.++...         
T Consensus        22 ~~g~v~v~d~~~-~~~~---~~-~~~~~v~~~~~s--------pDg~~l~~~~~~~g~~v~v~d~~~~~~~---------   79 (360)
T d1k32a3          22 SRGQAFIQDVSG-TYVL---KV-PEPLRIRYVRRG--------GDTKVAFIHGTREGDFLGIYDYRTGKAE---------   79 (360)
T ss_dssp             ETTEEEEECTTS-SBEE---EC-SCCSCEEEEEEC--------SSSEEEEEEEETTEEEEEEEETTTCCEE---------
T ss_pred             ECCeEEEEECCC-CcEE---Ec-cCCCCEEEEEEC--------CCCCEEEEEEcCCCCEEEEEECCCCcEE---------
Confidence            468999999988 6432   23 699999999999        8899998877654  7999999876432         


Q ss_pred             ceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc
Q 048511           82 EVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI  161 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  161 (351)
                                                 .+..|...|.+++|+      |++++      |++++.++.+++|++..  +.
T Consensus        80 ---------------------------~~~~~~~~v~~~~~s------pdg~~------l~~~~~~~~~~~~~~~~--~~  118 (360)
T d1k32a3          80 ---------------------------KFEENLGNVFAMGVD------RNGKF------AVVANDRFEIMTVDLET--GK  118 (360)
T ss_dssp             ---------------------------ECCCCCCSEEEEEEC------TTSSE------EEEEETTSEEEEEETTT--CC
T ss_pred             ---------------------------EeeCCCceEEeeeec------ccccc------cceeccccccccccccc--cc
Confidence                                       345688999999999      79999      99999999999999998  66


Q ss_pred             eEEEEEeccccccccceEEEEEcCCCCEEEEEe----------eCCeEEEEEcccCcccCcccccccccccccEEEEEee
Q 048511          162 WMNVVTVGELSHSALGFYGGHWSPDGRSILAHG----------YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWS  231 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~s  231 (351)
                      ....+.     .+...+.+++|+|++++|+.+.          .++.+++||+.+++      ...+..+...+..++|+
T Consensus       119 ~~~~~~-----~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~------~~~~~~~~~~~~~~~~s  187 (360)
T d1k32a3         119 PTVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------IFAATTENSHDYAPAFD  187 (360)
T ss_dssp             EEEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------EEECSCSSSBEEEEEEC
T ss_pred             eeeeee-----cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc------eeeeccccccccccccc
Confidence            655555     5677788999999999998654          34569999998863      33444566778899999


Q ss_pred             cCCCEEEEEeCCCcEEEEcCCC
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWK  253 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~  253 (351)
                      |+|++|++++.|+.+++||...
T Consensus       188 pdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         188 ADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             TTSCEEEEEESCCCCCEECSSS
T ss_pred             CCCCEEEEEeCCCceEcccccc
Confidence            9999999999999999998643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=9.6e-23  Score=178.75  Aligned_cols=280  Identities=15%  Similarity=0.088  Sum_probs=183.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeec----
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQS----   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~----   77 (351)
                      ++.||+|+|||+.+ +  +.+.++..|. .+..++|+        |+|++|++++.|++|++||+.+++.......    
T Consensus        38 ~~~dg~v~vwD~~t-~--~~~~~l~~g~-~~~~vafS--------PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          38 LRDAGQIALVDGDS-K--KIVKVIDTGY-AVHISRMS--------ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             ETTTTEEEEEETTT-C--SEEEEEECCS-SEEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             EcCCCEEEEEECCC-C--cEEEEEeCCC-CeeEEEEC--------CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            56799999999999 7  4566788774 58999999        8999999999999999999998875432221    


Q ss_pred             ccccceeeeEeeecCCeEEecC-CceeEEEEE------------------------------------------------
Q 048511           78 TYRKEVISLASYIEGPVLVAGS-SSYQVSVES------------------------------------------------  108 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~------------------------------------------------  108 (351)
                      .+.....+.+|+|+|+.++++. .+..+.++.                                                
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            1223345667778888776533 222111110                                                


Q ss_pred             ---------------eccccccceEEEEecCCCCCCCCCcccCCCceeEEe-ecCCeEEEEeccCCCcceEEEEEecccc
Q 048511          109 ---------------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSA-SMDKTMMIWQPEKTTGIWMNVVTVGELS  172 (351)
Q Consensus       109 ---------------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~  172 (351)
                                     ....+...+..+.|+      +++++      ++++ ..+..+.+++...  +..+........ 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~------~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~-  250 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWD------SSHRY------FMTAANNSNKVAVIDSKD--RRLSALVDVGKT-  250 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEEC------TTSCE------EEEEETTCSEEEEEETTT--TEEEEEEECSSC-
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeEC------CCCcE------EEeeeecccceeeeeccc--ccEEEEeccCCc-
Confidence                           011233445677777      56665      5544 4567789999988  666666553322 


Q ss_pred             ccccceEEEEEcCCCC-EE--EEEeeCCeEEEEEcccCccc--CcccccccccccccEEEEEeecCCCEEEE-------E
Q 048511          173 HSALGFYGGHWSPDGR-SI--LAHGYGGAFHLWRNVGVDID--NWQPQKVPSGHFAAVMDISWSRSSDYLLS-------V  240 (351)
Q Consensus       173 ~~~~~i~~i~~~~~~~-~l--~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~v~~v~~sp~~~~l~s-------~  240 (351)
                        ........+...+. .+  +....|+.+.+|+.......  .++....+.+|...+..++|+|++++|++       +
T Consensus       251 --~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~  328 (426)
T d1hzua2         251 --PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  328 (426)
T ss_dssp             --CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSH
T ss_pred             --ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCc
Confidence              11222333333222 22  23345788888887654321  23456678899999999999999999994       4


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEec---cccccccceeEEEEeeeCCCcEE-EE----ecCCCeEEEEecC-chhhh
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVA---RPQVHGHDINCVTIIQGKGNHRF-VS----GADEKVARVFEAP-LSFLK  311 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l-~s----~~~dg~v~vw~~~-~~~~~  311 (351)
                      +.|++|+|||+.+++...    ....+.   .+..|...+..++|+|  ||+++ ++    ++.++.|+|||.. .+..+
T Consensus       329 ~~~~tv~vwd~~t~~~~~----~~~~~~~~~~~~~~~~rv~~~~fSp--DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKY----QVLPIAEWADLGEGAKRVVQPEYNK--RGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             HHHTCEEEEETTCTTSCC----EEECHHHHHCCCSSCCCEEEEEECS--SSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             ccCCEEEEEECCCCCcCe----EEeccchhcccCCCCccEEEEEECC--CCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence            568899999998876321    111111   2334556688999999  88766 33    3478999999977 66555


Q ss_pred             ceeec
Q 048511          312 TLNHA  316 (351)
Q Consensus       312 ~~~~~  316 (351)
                      .+.+.
T Consensus       403 ~i~~~  407 (426)
T d1hzua2         403 VVKDP  407 (426)
T ss_dssp             EECCT
T ss_pred             EECCC
Confidence            55544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.1e-21  Score=161.41  Aligned_cols=260  Identities=14%  Similarity=0.074  Sum_probs=186.7

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ++.|++|.|||+++ ++  .+.++.. ...+..++|+        ++|++| ++++.++.|++||+.+++....+...  
T Consensus         8 ~~~~~~v~v~D~~t-~~--~~~~i~~-g~~p~~va~s--------pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~--   73 (301)
T d1l0qa2           8 NSESDNISVIDVTS-NK--VTATIPV-GSNPMGAVIS--------PDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--   73 (301)
T ss_dssp             ETTTTEEEEEETTT-TE--EEEEEEC-SSSEEEEEEC--------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred             ECCCCEEEEEECCC-Ce--EEEEEEC-CCCceEEEEe--------CCCCEEEEEECCCCEEEEEECCCCceeeeeecc--
Confidence            56799999999998 74  4556653 3457899999        889877 56678999999999988776655433  


Q ss_pred             cceeeeEeeecCCeEEec-CCceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEE
Q 048511           81 KEVISLASYIEGPVLVAG-SSSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMM  151 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~  151 (351)
                      .....+.+++++..+++. ..+..+.++.        .+. +.....++.|+      +++..     +++++..++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~dg~~-----~~~~~~~~~~~~  141 (301)
T d1l0qa2          74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALS------PDGKK-----LYVTNNGDKTVS  141 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC------TTSSE-----EEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEee------cCCCe-----eeeeecccccee
Confidence            356788899999876654 3343443322        222 34567889999      67765     145666788999


Q ss_pred             EEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEe
Q 048511          152 IWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISW  230 (351)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~  230 (351)
                      +|+..+  ......+.      ....+..++++|++..+++++.+ +.+.+|+.....     ....+. ....+..++|
T Consensus       142 ~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~  207 (301)
T d1l0qa2         142 VINTVT--KAVINTVS------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVK-VEAAPSGIAV  207 (301)
T ss_dssp             EEETTT--TEEEEEEE------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEE-CSSEEEEEEE
T ss_pred             eeeccc--cceeeecc------cCCCceEEEeeccccceeeeccccccccccccccee-----eeeccc-ccCCcceeec
Confidence            999998  66665554      23457889999999988888766 667777766542     233333 3456788999


Q ss_pred             ecCCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecC
Q 048511          231 SRSSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAP  306 (351)
Q Consensus       231 sp~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~  306 (351)
                      ++++..++.++.   ++.|++||..+++          .+..+. ++..+++++|+|  |+++| ++++.|+.|++||++
T Consensus       208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~----------~~~~~~-~~~~~~~va~sp--dg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         208 NPEGTKAYVTNVDKYFNTVSMIDTGTNK----------ITARIP-VGPDPAGIAVTP--DGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTE----------EEEEEE-CCSSEEEEEECT--TSSEEEEEETTTTEEEEEETT
T ss_pred             cccccccccccccceeeeeeeeecCCCe----------EEEEEc-CCCCEEEEEEeC--CCCEEEEEECCCCeEEEEECC
Confidence            999998765543   4689999998876          333332 234589999999  88865 788899999999987


Q ss_pred             -chhhhcee
Q 048511          307 -LSFLKTLN  314 (351)
Q Consensus       307 -~~~~~~~~  314 (351)
                       ++.+.++.
T Consensus       275 t~~~~~~~~  283 (301)
T d1l0qa2         275 TNTITATMA  283 (301)
T ss_dssp             TTEEEEEEE
T ss_pred             CCeEEEEEe
Confidence             77776664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=6.9e-22  Score=166.98  Aligned_cols=268  Identities=9%  Similarity=0.020  Sum_probs=181.1

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeee--ecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeec
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELK--GHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQS   77 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~   77 (351)
                      +++.|++|+|||+++ ++  .+.++.  .+...+.+++|+        |+|++| ++++.++.|.+||+.+++.......
T Consensus         6 t~~~d~~v~v~D~~s-~~--~~~~i~~~~~~~~~~~i~~s--------pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~   74 (337)
T d1pbyb_           6 APARPDKLVVIDTEK-MA--VDKVITIADAGPTPMVPMVA--------PGGRIAYATVNKSESLVKIDLVTGETLGRIDL   74 (337)
T ss_dssp             EEETTTEEEEEETTT-TE--EEEEEECTTCTTCCCCEEEC--------TTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred             EEcCCCEEEEEECCC-Ce--EEEEEECCCCCCCccEEEEC--------CCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            467899999999998 74  455554  345568899999        889887 5667899999999999887655543


Q ss_pred             cc----ccceeeeEeeecCCeEEecCCceeE------------EEE--------EeccccccceEEEEecCCCCCCCCCc
Q 048511           78 TY----RKEVISLASYIEGPVLVAGSSSYQV------------SVE--------SLLIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        78 ~~----~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~--------~~~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                      ..    ......++++++++.++++......            ..+        ..+. +...+..++|+      ++++
T Consensus        75 ~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s------~dg~  147 (337)
T d1pbyb_          75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWA------RDGS  147 (337)
T ss_dssp             CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEEC------TTSS
T ss_pred             CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEc------CCCC
Confidence            32    2334578899999988876533221            111        1122 33457788999      7888


Q ss_pred             ccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc------------------cceEEEEEcCCCCEEEEEee
Q 048511          134 SCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA------------------LGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       134 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~~i~~i~~~~~~~~l~~~~~  195 (351)
                      +      +++++.+  +.+||...  +.....+.........                  ..+.......+.........
T Consensus       148 ~------l~~~~~~--~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T d1pbyb_         148 K------LYGLGRD--LHVMDPEA--GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             C------EEEESSS--EEEEETTT--TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             E------EEEEcCC--cceeeeec--CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence            8      8887654  77899988  6666555432211000                  00001111112222223344


Q ss_pred             CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEecccccccc
Q 048511          196 GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGH  275 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  275 (351)
                      ++.+.+|+..++.    .....+..+...+..+.++|++.+++.+  ++.|++||+.+++          .+... .+..
T Consensus       218 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~----------~~~~~-~~~~  280 (337)
T d1pbyb_         218 RTGLLTMDLETGE----MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA----------SIKRV-PLPH  280 (337)
T ss_dssp             EEEEEEEETTTCC----EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE----------EEEEE-ECSS
T ss_pred             CccEEEEEcCCCc----EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc----------EEEEE-cCCC
Confidence            5678888887764    2233344567778889999999988765  5899999998887          33333 2455


Q ss_pred             ceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceee
Q 048511          276 DINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       276 ~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .+.+++|+|  ||.+|++++.|+.|+|||.. .+.+.+++-
T Consensus       281 ~~~~~~~s~--dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         281 SYYSVNVST--DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CCCEEEECT--TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            689999999  99999999999999999987 666666643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=3.3e-21  Score=164.31  Aligned_cols=190  Identities=9%  Similarity=-0.044  Sum_probs=153.0

Q ss_pred             eEEEeeCCcccCCCC-CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEecc
Q 048511           33 RSLDFSLPVCTSGEA-ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLI  111 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (351)
                      ..-.|+        | +|+++|+++ +|.|.+||+..+...+                                     .
T Consensus         6 ~~~~fS--------P~dG~~~a~~~-~g~v~v~d~~~~~~~~-------------------------------------~   39 (360)
T d1k32a3           6 FAEDFS--------PLDGDLIAFVS-RGQAFIQDVSGTYVLK-------------------------------------V   39 (360)
T ss_dssp             GEEEEE--------ECGGGCEEEEE-TTEEEEECTTSSBEEE-------------------------------------C
T ss_pred             hccccc--------CCCCCEEEEEE-CCeEEEEECCCCcEEE-------------------------------------c
Confidence            346688        6 899999987 5799999997654321                                     2


Q ss_pred             ccccceEEEEecCCCCCCCCCcccCCCceeEEeecCC--eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE
Q 048511          112 GHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDK--TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS  189 (351)
Q Consensus       112 ~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~  189 (351)
                      +|...|.+++|+      ||++.      |++++.+.  .|++||++.  +.... +     ..+...+.+++|+|++++
T Consensus        40 ~~~~~v~~~~~s------pDg~~------l~~~~~~~g~~v~v~d~~~--~~~~~-~-----~~~~~~v~~~~~spdg~~   99 (360)
T d1k32a3          40 PEPLRIRYVRRG------GDTKV------AFIHGTREGDFLGIYDYRT--GKAEK-F-----EENLGNVFAMGVDRNGKF   99 (360)
T ss_dssp             SCCSCEEEEEEC------SSSEE------EEEEEETTEEEEEEEETTT--CCEEE-C-----CCCCCSEEEEEECTTSSE
T ss_pred             cCCCCEEEEEEC------CCCCE------EEEEEcCCCCEEEEEECCC--CcEEE-e-----eCCCceEEeeeecccccc
Confidence            588899999999      79988      88777654  799999987  44332 2     267888999999999999


Q ss_pred             EEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe----------CCCcEEEEcCCCcccccc
Q 048511          190 ILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS----------HDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       190 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~----------~dg~i~vwd~~~~~~~~~  259 (351)
                      |++++.++.+++|++.+.     .....+..|...+.+++|+|+|++|+.+.          .++.+++||+.+++    
T Consensus       100 l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----  170 (360)
T d1k32a3         100 AVVANDRFEIMTVDLETG-----KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----  170 (360)
T ss_dssp             EEEEETTSEEEEEETTTC-----CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----
T ss_pred             cceecccccccccccccc-----ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc----
Confidence            999999999999999887     44666777888899999999999998543          34579999998775    


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                            .. ....+...+..++|+|  ++++|++++.|+.+++|+..
T Consensus       171 ------~~-~~~~~~~~~~~~~~sp--dg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         171 ------IF-AATTENSHDYAPAFDA--DSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             ------EE-ECSCSSSBEEEEEECT--TSCEEEEEESCCCCCEECSS
T ss_pred             ------ee-eecccccccccccccC--CCCEEEEEeCCCceEccccc
Confidence                  22 2224556688899999  99999999999999999964

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3e-19  Score=156.27  Aligned_cols=283  Identities=9%  Similarity=-0.033  Sum_probs=179.7

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCccccee--ec--
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANT--QS--   77 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~--   77 (351)
                      .+.||+|.|||.++ +  +.+..+..|. .+..++|+        |+|++|++++.|++|++||+.+++.....  ..  
T Consensus        38 ~~d~g~v~v~D~~t-~--~v~~~~~~g~-~~~~v~fS--------pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          38 LRDAGQIALIDGST-Y--EIKTVLDTGY-AVHISRLS--------ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             ETTTTEEEEEETTT-C--CEEEEEECSS-CEEEEEEC--------TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EcCCCEEEEEECCC-C--cEEEEEeCCC-CeeEEEEC--------CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            46799999999999 7  4566777664 69999999        89999999999999999999887643322  21  


Q ss_pred             ccccceeeeEeeecCCeEE-ecCCceeEEEEEe--------cc-----------ccccceEEEEecCCCCCCCCCcccCC
Q 048511           78 TYRKEVISLASYIEGPVLV-AGSSSYQVSVESL--------LI-----------GHEDWVYSVQWEPPSTAPSDGVSCQQ  137 (351)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~--------~~-----------~h~~~v~~l~~~p~~~~~~~~~~~~~  137 (351)
                      .+.....+..|+|||+.++ ++..+..+.++..        +.           .+......+.++      +++..   
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s------~dg~~---  176 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS------HYRPE---  176 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC------SSSSE---
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC------CCCCE---
Confidence            1223344556788999874 4555666655542        11           133445677788      56654   


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CCeEEEEEcccCcccCc----
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GGAFHLWRNVGVDIDNW----  212 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~----  212 (351)
                        ++++...++.|.+||...  ........+    .....+..++|+|+++++++++. ++.+.++|..+.+....    
T Consensus       177 --~~vs~~~~~~i~~~d~~~--~~~~~~~~i----~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g  248 (432)
T d1qksa2         177 --FIVNVKETGKILLVDYTD--LNNLKTTEI----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  248 (432)
T ss_dssp             --EEEEETTTTEEEEEETTC--SSEEEEEEE----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             --EEEEEccCCeEEEEEccC--CCcceEEEE----cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence              156677789999999987  443332221    23346789999999998877775 46888888765421000    


Q ss_pred             ----c-------------------------------cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcccc
Q 048511          213 ----Q-------------------------------PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVAS  257 (351)
Q Consensus       213 ----~-------------------------------~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~  257 (351)
                          .                               .......|...+....++|++..+++++.+...++|+.......
T Consensus       249 ~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~  328 (432)
T d1qksa2         249 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  328 (432)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC
Confidence                0                               00001122334666677777777777777777777765332110


Q ss_pred             cc--------------------CccceE--EeccccccccceeEEEEeeeCCCcEEEEe-----cCCCeEEEEecC-chh
Q 048511          258 LM--------------------GENSWH--EVARPQVHGHDINCVTIIQGKGNHRFVSG-----ADEKVARVFEAP-LSF  309 (351)
Q Consensus       258 ~~--------------------~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-----~~dg~v~vw~~~-~~~  309 (351)
                      ..                    ..+.|.  ....+..|...+..++|+|  ||++++.+     ..+|.|+|||.. .+.
T Consensus       329 ~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~--DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         329 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK--DGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT--TSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECC--CCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            00                    000110  0012224556688999999  89877444     257899999976 555


Q ss_pred             hhceee
Q 048511          310 LKTLNH  315 (351)
Q Consensus       310 ~~~~~~  315 (351)
                      ...+.+
T Consensus       407 ~~~i~~  412 (432)
T d1qksa2         407 KHVIKD  412 (432)
T ss_dssp             EEEECC
T ss_pred             EeEecC
Confidence            555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.9e-20  Score=158.58  Aligned_cols=265  Identities=11%  Similarity=0.003  Sum_probs=173.3

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeecc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQST   78 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~   78 (351)
                      +++.|++|.|||+++ +  +.+.+++ .|...+.+++|+        |+|+++ ++++.++.|.+||+.+++........
T Consensus        13 ~~~~~~~v~v~D~~t-~--~~~~t~~~~~~~~p~~l~~s--------pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_          13 VTNYPNNLHVVDVAS-D--TVYKSCVMPDKFGPGTAMMA--------PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             EEETTTEEEEEETTT-T--EEEEEEECSSCCSSCEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             EEcCCCEEEEEECCC-C--CEEEEEEcCCCCCcceEEEC--------CCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            367899999999998 7  4556665 456678999999        888877 55568899999999988776544332


Q ss_pred             c-----ccceeeeEeeecCCeEEecCCce------------eEEEEEecccccc----------ceEEEEecCCCCCCCC
Q 048511           79 Y-----RKEVISLASYIEGPVLVAGSSSY------------QVSVESLLIGHED----------WVYSVQWEPPSTAPSD  131 (351)
Q Consensus        79 ~-----~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~h~~----------~v~~l~~~p~~~~~~~  131 (351)
                      .     ......++++++|+.++++....            .+..+....+...          .+..+.++      ++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  155 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA------DD  155 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC------TT
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec------CC
Confidence            2     12356789999999888765322            2233322222111          22233333      34


Q ss_pred             CcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC--------------------------
Q 048511          132 GVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--------------------------  185 (351)
Q Consensus       132 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--------------------------  185 (351)
                      +.+      +++   ++.+.+|++.+  +..+..+....      ....+.++|                          
T Consensus       156 ~~~------~~~---~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         156 GSL------YVA---GPDIYKMDVKT--GKYTVALPLRN------WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             SCE------EEE---SSSEEEECTTT--CCEEEEECSTT------CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             CEE------EEe---CCcceEEEccC--CCEEEEEecCC------CccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence            443      333   24578898887  66655554221      111122222                          


Q ss_pred             CCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceE
Q 048511          186 DGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWH  265 (351)
Q Consensus       186 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  265 (351)
                      ....++++..+..+.+||+.+..    ........+...+..+.+++++.+++... ++.|++||..+++          
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~----------  283 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGK----THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK----------  283 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCC----EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE----------
T ss_pred             CceeEeeccCCceEEEEECCCCc----eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCc----------
Confidence            23334455566778888887763    22344456777888999999988887765 4579999998876          


Q ss_pred             EeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          266 EVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      .+... .++..+.+++|+|  |+.+|++++.|+.|+|||+. ++.+.++....
T Consensus       284 ~~~~~-~~~~~~~~va~s~--DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         284 LIKAA-NLDHTYYCVAFDK--KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EEEEE-ECSSCCCEEEECS--SSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEE-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            33332 2345689999999  99999999999999999987 77777666443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.4e-18  Score=144.84  Aligned_cols=274  Identities=10%  Similarity=0.071  Sum_probs=177.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCccccee--ecc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSANT--QST   78 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~--~~~   78 (351)
                      ++.|++|+||++...+.+..+.. ..|.+.|..|+|+        |+|++|++++ .|+.|++|++.........  ...
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~s--------pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVS--------PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEEC--------TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEe--------CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc
Confidence            56899999999986455554444 3578999999999        8899886554 5899999999866543322  222


Q ss_pred             cccceeeeEeeecCCeEEecCC-ceeEEEEE----------eccccccceEEEEecCCCCCCCCCcccCCCceeEEee-c
Q 048511           79 YRKEVISLASYIEGPVLVAGSS-SYQVSVES----------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSAS-M  146 (351)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~----------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~-~  146 (351)
                      ....+..++++|+|+.++++.. +..+..+.          ....+...+.++.++      ++++.      ++.++ .
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s------~d~~~------~~~~~~~  148 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS------PDNRT------LWVPALK  148 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC------TTSSE------EEEEEGG
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEee------eccee------eeccccc
Confidence            3445678999999998888753 43443322          123455567788888      67777      66665 4


Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccC--ccccc---cccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDN--WQPQK---VPSG  220 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~--~~~~~---~~~~  220 (351)
                      +..|.+|+............... ..........++|++++.+++... ..+...+|+........  ...+.   ....
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             cceeeEEEeccCCcceeeeceee-eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence            56799999876322222221111 112334568899999999877665 45778888865432100  00010   1112


Q ss_pred             ccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEe-cCCC
Q 048511          221 HFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSG-ADEK  298 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg  298 (351)
                      .......+++++++++++.. ..++.+.+|++......       ..+.........+..++|+|  ||++|+++ ..++
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~a~sp--DGk~l~va~~~~~  298 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-------LSKEGFQPTETQPRGFNVDH--SGKYLIAAGQKSH  298 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-------EEEEEEEECSSSCCCEEECT--TSSEEEEECTTTC
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE-------EEEEEEeCCCCCeeEEEEeC--CCCEEEEEECCCC
Confidence            33456778999999876544 56789999998765421       12222223345578899999  89876554 5678


Q ss_pred             eEEEEecC
Q 048511          299 VARVFEAP  306 (351)
Q Consensus       299 ~v~vw~~~  306 (351)
                      .|++|+++
T Consensus       299 ~v~v~~id  306 (333)
T d1ri6a_         299 HISVYEIV  306 (333)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=5.2e-18  Score=148.27  Aligned_cols=245  Identities=13%  Similarity=0.067  Sum_probs=170.2

Q ss_pred             CccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec-------------cccc
Q 048511           48 ISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL-------------IGHE  114 (351)
Q Consensus        48 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~h~  114 (351)
                      ..-++++.+.||+|++||+.+++.+..+...  ..+..++|+|||+++++++.++.+.++...             .+|.
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~  108 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  108 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc
Confidence            3445688889999999999999888776654  357889999999999999888888776532             2345


Q ss_pred             cceEEEEecCCCCCCCCCcccCCCcee-EEeecCCeEEEEeccCCCcceEEEEEeccc------cccccceEEEEEcCCC
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKTMMIWQPEKTTGIWMNVVTVGEL------SHSALGFYGGHWSPDG  187 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~  187 (351)
                      ..+.+++|+      |||++      + +++..++.+++||...  +...........      ..+......+.+++++
T Consensus       109 ~~~~s~~~s------pDG~~------l~v~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~  174 (426)
T d1hzua2         109 SVESSKFKG------YEDRY------TIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  174 (426)
T ss_dssp             EEEECCSTT------CTTTE------EEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             ceEEeeeec------CCCCE------EEEeecCCCeEEEEcCCc--cceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence            556666777      78887      6 5556899999999998  665554442110      1123344567777888


Q ss_pred             CEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCcccccc------
Q 048511          188 RSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLM------  259 (351)
Q Consensus       188 ~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~------  259 (351)
                      ..++....+ +.+.+++.....    ........+...+..+.|+|++++++++. .+..+.+++..+++....      
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (426)
T d1hzua2         175 PEFIVNVKETGKVLLVNYKDID----NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  250 (426)
T ss_dssp             SEEEEEETTTTEEEEEECSSSS----SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSC
T ss_pred             CEEEEecCCCCeEEEEEecccc----ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCc
Confidence            777665544 666666665542    22233345677889999999999877665 456788888766543221      


Q ss_pred             --------------------------------------CccceEEeccccccccceeEEEEeeeCCCcEEE-------Ee
Q 048511          260 --------------------------------------GENSWHEVARPQVHGHDINCVTIIQGKGNHRFV-------SG  294 (351)
Q Consensus       260 --------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-------s~  294 (351)
                                                            ....|+....+.+|+..+..++|+|  ++.+|+       ++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP--dg~~l~v~~~~~~s~  328 (426)
T d1hzua2         251 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP--KSSHLYVDTTFNPDA  328 (426)
T ss_dssp             CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT--TCSEEEECCTTCSSH
T ss_pred             ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC--CCceEEEeecCCCCc
Confidence                                                  0111234445667888899999999  999998       46


Q ss_pred             cCCCeEEEEecC-chhhhcee
Q 048511          295 ADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       295 ~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      +.|++|+|||+. ++...++.
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEE
T ss_pred             ccCCEEEEEECCCCCcCeEEe
Confidence            678999999986 66555543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=2.3e-16  Score=134.94  Aligned_cols=271  Identities=10%  Similarity=-0.031  Sum_probs=173.1

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccc
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSA   73 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~   73 (351)
                      .++.|.+||.++ ++  .+.++..+...  .++|+        |+|++|++++          .++.|.+||..+++...
T Consensus        45 ~~~~v~v~D~~t-g~--~~~~~~~~~~~--~~a~S--------pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~  111 (373)
T d2madh_          45 AIIQQWVLDAGS-GS--ILGHVNGGFLP--NPVAA--------HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA  111 (373)
T ss_pred             CCceEEEEECCC-CC--EEEEEeCCCCc--cEEEc--------CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEE
Confidence            456799999988 74  45566665543  79999        8999999875          45789999999988765


Q ss_pred             eeeccc------ccceeeeEeeecCCeEEecC--CceeEEEEEe----ccccccceEEEEecCCCCCCCCCcccCCCcee
Q 048511           74 NTQSTY------RKEVISLASYIEGPVLVAGS--SSYQVSVESL----LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI  141 (351)
Q Consensus        74 ~~~~~~------~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~----~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l  141 (351)
                      ......      ......+.++++++.+++..  ....+.++..    ...+.....++.++      ++++.     .+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~g~~-----~~  180 (373)
T d2madh_         112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIH------PGAPS-----TF  180 (373)
T ss_pred             EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEe------cCCCc-----EE
Confidence            543332      12234577888888766543  2222322221    22344456788888      55543     16


Q ss_pred             EEeecCCeEEEEeccCCCcceEEEEEeccc-cccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc
Q 048511          142 LSASMDKTMMIWQPEKTTGIWMNVVTVGEL-SHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG  220 (351)
Q Consensus       142 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~  220 (351)
                      ++.+.|+.+.+|+...  +........... .........+.+++++. ++..+.++.+.+|+.......   .......
T Consensus       181 v~~~~dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~---~~~~~~~  254 (373)
T d2madh_         181 YLLCAQGGLAKTDHAG--GAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGAT---NKAPIDA  254 (373)
T ss_pred             EEEcCCCeEEEEEcCC--ceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEE---EEEeecc
Confidence            7889999999999987  544443332111 11222234455666554 445567888999988765321   1111111


Q ss_pred             ----------ccccEEEEEeecCCCEE----------EEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          221 ----------HFAAVMDISWSRSSDYL----------LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       221 ----------~~~~v~~v~~sp~~~~l----------~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                                .......+++++++..+          ++...++.+.+||..+++          .+..+ .+...+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~----------~~~~~-~~~~~~~~~  323 (373)
T d2madh_         255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----------TSSQI-SLGHDVDAI  323 (373)
T ss_pred             ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc----------EEEEe-cCCCCeeEE
Confidence                      11223445666665544          445566789999998886          33333 355668999


Q ss_pred             EEeeeCCCc--EEEEecCCCeEEEEecC-chhhhceeecc
Q 048511          281 TIIQGKGNH--RFVSGADEKVARVFEAP-LSFLKTLNHAT  317 (351)
Q Consensus       281 ~~~~~~~~~--~l~s~~~dg~v~vw~~~-~~~~~~~~~~~  317 (351)
                      +|+|  ||+  ++++++.|+.|+|||+. ++.++++..+.
T Consensus       324 a~sp--DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         324 SVAQ--DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             EECC--CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCC
Confidence            9999  877  45789999999999987 88888776554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=3e-17  Score=139.45  Aligned_cols=270  Identities=10%  Similarity=0.064  Sum_probs=166.2

Q ss_pred             CCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEe----------eCCCcEEEEecCCCccc
Q 048511            3 GLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSS----------SQDKVIRIWKLALRGSS   72 (351)
Q Consensus         3 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~----------~~dg~i~iwd~~~~~~~   72 (351)
                      ..+++|.+||..+ +  +.+.++..+..  ..++|+        |++++|+++          +.|+.|++||+.+++..
T Consensus        25 ~~~~~v~v~D~~t-g--~~~~~~~~g~~--~~~a~S--------pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~   91 (355)
T d2bbkh_          25 AAVTQQFVIDGEA-G--RVIGMIDGGFL--PNPVVA--------DDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT   91 (355)
T ss_dssp             CSSEEEEEEETTT-T--EEEEEEEECSS--CEEEEC--------TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CCcCeEEEEECCC-C--cEEEEEECCCC--CceEEc--------CCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE
Confidence            4567899999998 7  44566665544  479999        889988765          34789999999998776


Q ss_pred             ceeeccc------ccceeeeEeeecCCeEEecC--CceeEEEEEeccccccceEEEE------ecCCCCCCCCCcccCCC
Q 048511           73 ANTQSTY------RKEVISLASYIEGPVLVAGS--SSYQVSVESLLIGHEDWVYSVQ------WEPPSTAPSDGVSCQQP  138 (351)
Q Consensus        73 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~h~~~v~~l~------~~p~~~~~~~~~~~~~~  138 (351)
                      ..+....      ......++|+++++.+++..  ....+.++....+.  .+..+.      ..|     .....    
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~----  160 (355)
T d2bbkh_          92 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVPDCYHIFP-----TAPDT----  160 (355)
T ss_dssp             EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCSEEEEEE-----EETTE----
T ss_pred             EEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc--EeeEEecCCcceEee-----cCCcc----
Confidence            5543322      22345678999999887753  23333333221110  011111      000     11111    


Q ss_pred             ceeEEeecCCeEEEEeccCCCcceEEEEEec-cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccc
Q 048511          139 SSILSASMDKTMMIWQPEKTTGIWMNVVTVG-ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKV  217 (351)
Q Consensus       139 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  217 (351)
                        .+..+.|+...++.....  ......... ....+...+....+.+++..++.++.++.+++|++..+...   .+..
T Consensus       161 --~~~~~~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~  233 (355)
T d2bbkh_         161 --FFMHCRDGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK---FLPA  233 (355)
T ss_dssp             --EEEEETTSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE---ECCC
T ss_pred             --eEEEcCCCCEEEEEecCC--CeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE---EEec
Confidence              444555666555554431  111111111 01123334555678888888999999999999999876431   1111


Q ss_pred             cccc----------cccEEEEEeecCCCEEEEEeCC----------CcEEEEcCCCccccccCccceEEeccccccccce
Q 048511          218 PSGH----------FAAVMDISWSRSSDYLLSVSHD----------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDI  277 (351)
Q Consensus       218 ~~~~----------~~~v~~v~~sp~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (351)
                      ...+          ......+++++++..++....+          ..|.+||..+++          .+..+. ++..+
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~----------~~~~~~-~~~~~  302 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----------RLAKFE-MGHEI  302 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----------EEEEEE-EEEEE
T ss_pred             cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc----------EEEEec-CCCCE
Confidence            1111          1233458889999887765443          369999998876          333332 34558


Q ss_pred             eEEEEeeeCCCc--EEEEecCCCeEEEEecC-chhhhceeec
Q 048511          278 NCVTIIQGKGNH--RFVSGADEKVARVFEAP-LSFLKTLNHA  316 (351)
Q Consensus       278 ~~~~~~~~~~~~--~l~s~~~dg~v~vw~~~-~~~~~~~~~~  316 (351)
                      .+++|+|  |++  ++++++.|+.|+|||+. ++.++++..+
T Consensus       303 ~~~a~sp--DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         303 DSINVSQ--DEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             CEEEECC--SSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEEEcC--CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            9999999  776  56788899999999986 8888877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=3e-17  Score=143.36  Aligned_cols=196  Identities=8%  Similarity=-0.043  Sum_probs=141.7

Q ss_pred             cEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCC
Q 048511           50 ILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAP  129 (351)
Q Consensus        50 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~  129 (351)
                      -++++.+.||+|.|||..+++.+..+                                   ..+ ..+..++|+      
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~-----------------------------------~~g-~~~~~v~fS------   70 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVL-----------------------------------DTG-YAVHISRLS------   70 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE-----------------------------------ECS-SCEEEEEEC------
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEE-----------------------------------eCC-CCeeEEEEC------
Confidence            34689999999999999988765433                                   334 358999999      


Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEE-EEEeeCCeEEEEEcccCc
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSI-LAHGYGGAFHLWRNVGVD  208 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~~~d~~~~~  208 (351)
                      |||++      +++++.|++|++||+.+.+......++.  ...+...+.+..|+|||++| +++..++.|++||..+++
T Consensus        71 pDG~~------l~~~s~dg~v~~~d~~t~~~~~~~~i~~--~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2          71 ASGRY------LFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             TTSCE------EEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CCCCE------EEEEcCCCCEEEEEeeCCCceEEEEEec--CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence            89999      9999999999999998844434444432  23455566777889999986 667789999999998864


Q ss_pred             ccCcccccccc-----------cccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCccccccCccceEEeccccccccc
Q 048511          209 IDNWQPQKVPS-----------GHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHD  276 (351)
Q Consensus       209 ~~~~~~~~~~~-----------~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
                           ++..+.           .+......+.++|++..+ ++...++.|.+||..+.+.       . .+..+ .++..
T Consensus       143 -----~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-------~-~~~~i-~~g~~  208 (432)
T d1qksa2         143 -----PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-------L-KTTEI-SAERF  208 (432)
T ss_dssp             -----EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-------E-EEEEE-ECCSS
T ss_pred             -----ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-------c-eEEEE-cccCc
Confidence                 233222           244567788999999876 5566789999999877652       1 11111 34456


Q ss_pred             eeEEEEeeeCCCcEEEEec-CCCeEEEEecC-chhhh
Q 048511          277 INCVTIIQGKGNHRFVSGA-DEKVARVFEAP-LSFLK  311 (351)
Q Consensus       277 i~~~~~~~~~~~~~l~s~~-~dg~v~vw~~~-~~~~~  311 (351)
                      +..++|+|  +++++++++ .+..+.+++.. ++.+.
T Consensus       209 ~~~~~~sp--dg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         209 LHDGGLDG--SHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EEEEEECT--TSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             cccceECC--CCCEEEEeccccceEEEeecccceEEE
Confidence            88999999  888766555 56689999987 44333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=2e-15  Score=124.73  Aligned_cols=213  Identities=11%  Similarity=0.070  Sum_probs=151.6

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEE-EEeeCCCcEEEEecCCCcccceeecccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILL-VSSSQDKVIRIWKLALRGSSANTQSTYR   80 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~   80 (351)
                      ++.++.|++||+.+ +  ..+..+..|. .+..+.|+        +++..+ +++..++.+.+|+..+++.......  .
T Consensus        50 ~~~~~~i~v~d~~t-~--~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  115 (301)
T d1l0qa2          50 NAHSNDVSIIDTAT-N--NVIATVPAGS-SPQGVAVS--------PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--G  115 (301)
T ss_dssp             EGGGTEEEEEETTT-T--EEEEEEECSS-SEEEEEEC--------TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--S
T ss_pred             ECCCCEEEEEECCC-C--ceeeeeeccc-cccccccc--------cccccccccccccceeeecccccceeeeeccc--c
Confidence            45688999999998 6  4566777665 46889999        667654 5566788999999988766554443  3


Q ss_pred             cceeeeEeeecCCeEEecC-CceeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-CCeE
Q 048511           81 KEVISLASYIEGPVLVAGS-SSYQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTM  150 (351)
Q Consensus        81 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i  150 (351)
                      .....+.+++++..++... .+..+..+.        .+. +...+..+.++      +++..      ++++.. ++.+
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~------~~~~~~~~~~~  182 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVT------PDGTK------VYVANFDSMSI  182 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEEC------TTSSE------EEEEETTTTEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-cCCCceEEEee------ccccc------eeeeccccccc
Confidence            3567889999998876543 333333322        222 33457889999      66666      666655 4667


Q ss_pred             EEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC---CeEEEEEcccCcccCcccccccccccccEEE
Q 048511          151 MIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG---GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMD  227 (351)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~  227 (351)
                      .+|+...  ........      ....+..++|+++++.++++..+   +.|.+||+.+++     .+..+.. ...+.+
T Consensus       183 ~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-----~~~~~~~-~~~~~~  248 (301)
T d1l0qa2         183 SVIDTVT--NSVIDTVK------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-----ITARIPV-GPDPAG  248 (301)
T ss_dssp             EEEETTT--TEEEEEEE------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-----EEEEEEC-CSSEEE
T ss_pred             ccccccc--eeeeeccc------ccCCcceeeccccccccccccccceeeeeeeeecCCCe-----EEEEEcC-CCCEEE
Confidence            7777776  44444443      23457789999999988776544   689999998873     3445443 356899


Q ss_pred             EEeecCCCEE-EEEeCCCcEEEEcCCCcc
Q 048511          228 ISWSRSSDYL-LSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       228 v~~sp~~~~l-~s~~~dg~i~vwd~~~~~  255 (351)
                      ++|+|||++| ++++.|+.|++||+.+++
T Consensus       249 va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         249 IAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            9999999986 577789999999998886

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.1e-15  Score=128.20  Aligned_cols=220  Identities=8%  Similarity=-0.058  Sum_probs=145.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeec-----CCceeEEEeeCCcccCCCCCccEEEEee------------CCCcEEEE
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGH-----TDWIRSLDFSLPVCTSGEAISILLVSSS------------QDKVIRIW   64 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~~~~~~~~~l~t~~------------~dg~i~iw   64 (351)
                      ++.++.|.+||+.+ ++.  +..+..+     ...+..++|+        +++++++++.            .+..+.+|
T Consensus        52 ~~~~~~v~v~D~~t-~~~--~~~~~~~~~~~~~~~~~~v~~s--------~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          52 VNKSESLVKIDLVT-GET--LGRIDLSTPEERVKSLFGAALS--------PDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             ETTTTEEEEEETTT-CCE--EEEEECCBTTEEEECTTCEEEC--------TTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             ECCCCeEEEEECCC-CcE--EEEEecCCCcccccceeeEEEc--------CCCcEEEEeecCCcceeeeccccccceeec
Confidence            56789999999998 743  3444433     2356689999        8899888776            35778899


Q ss_pred             ecCCCcccceeecccccceeeeEeeecCCeEEecCCceeE------EEEEeccccccceEEEEecCCCCCC---------
Q 048511           65 KLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQV------SVESLLIGHEDWVYSVQWEPPSTAP---------  129 (351)
Q Consensus        65 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~h~~~v~~l~~~p~~~~~---------  129 (351)
                      |..+.........  ...+..++++++|+.+++++.+..+      .....+..+.. .....+.|.....         
T Consensus       121 d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  197 (337)
T d1pbyb_         121 DAETLSRRKAFEA--PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             ETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTE
T ss_pred             cccCCeEEEeccc--cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccce
Confidence            9988776554443  3456788999999999887765433      11111111110 0000111000000         


Q ss_pred             ---------CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEE
Q 048511          130 ---------SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFH  200 (351)
Q Consensus       130 ---------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~  200 (351)
                               .+...      +..+..++.+.+||...  +.......    ..+...+..+.++|++.+++.+  ++.|+
T Consensus       198 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~i~  263 (337)
T d1pbyb_         198 MATPFYTARKDIDP------ADPTAYRTGLLTMDLET--GEMAMREV----RIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             EEEEEEEEBTTSCT------TSGGGEEEEEEEEETTT--CCEEEEEE----EECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             eeeeeeeeeeccce------eeecccCccEEEEEcCC--CcEEEEEe----cCCCcceEEEEecccceEEEEc--cccEE
Confidence                     11111      23334466788999887  44333221    1455678889999999988765  58999


Q ss_pred             EEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          201 LWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       201 ~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +||+.++     +.+..+. +...+.+++|+|||++|++++.|+.|+|||..+.+
T Consensus       264 v~d~~~~-----~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         264 SFDLEKN-----ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEETTTT-----EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             EEECCCC-----cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            9999987     3454443 55678999999999999999999999999998876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=1.9e-14  Score=121.77  Aligned_cols=244  Identities=7%  Similarity=-0.040  Sum_probs=154.2

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecC-------CceeEEEeeCCcccCCCCCccEEEEee--CCCcEEEEecCCCccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHT-------DWIRSLDFSLPVCTSGEAISILLVSSS--QDKVIRIWKLALRGSS   72 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~   72 (351)
                      |..|+.|++||..+ ++..  ..+..+.       .....++|+        +++++++.++  .+..+.+|+..+++..
T Consensus        74 g~~d~~v~v~D~~t-~~~~--~~~~~~~~~~~~~~~~~~~~~~s--------~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          74 GERTDYVEVFDPVT-LLPT--ADIELPDAPRFLVGTYPWMTSLT--------PDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEEEEEEEEECTTT-CCEE--EEEEETTCCCCCBSCCGGGEEEC--------TTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             cCCCCEEEEEECCC-CCEE--EEEecCCcceeecCCCCceEEEe--------cCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            34578999999998 6543  3333222       234568899        7888877664  5678999999988765


Q ss_pred             ceeeccc------ccceeeeEeeecCCeEEecCCc-eeEEEEEe---ccccccceEEEEecCCCCCCCCCcccCCCceeE
Q 048511           73 ANTQSTY------RKEVISLASYIEGPVLVAGSSS-YQVSVESL---LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSIL  142 (351)
Q Consensus        73 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~---~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~  142 (351)
                      .......      ......+.+++++..+...... ........   ...+...+....+.      .++..      ++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~  210 (355)
T d2bbkh_         143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS------QKAGR------LV  210 (355)
T ss_dssp             EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE------TTTTE------EE
T ss_pred             eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeecccc------CCCCe------EE
Confidence            5443322      1223456677888877664322 22222221   12233445556666      55566      88


Q ss_pred             EeecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEeeC----------CeEEEEEcccC
Q 048511          143 SASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGYG----------GAFHLWRNVGV  207 (351)
Q Consensus       143 s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d----------g~i~~~d~~~~  207 (351)
                      .++.++.+++|++...+...+.......     ..........+++++++..++....+          ..|.+||..++
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            8899999999999873322222211100     00111223457899999988776544          36999999886


Q ss_pred             cccCcccccccccccccEEEEEeecCCC--EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          208 DIDNWQPQKVPSGHFAAVMDISWSRSSD--YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      +     .+..+. +...+.+++|+|||+  ++++++.|+.|+|||.++++          .+..+..++.....+.+.+
T Consensus       291 ~-----~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~----------~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         291 E-----RLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE----------ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             C-----EEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC----------EEEEECCCCSSCCEEECCC
T ss_pred             c-----EEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC----------EEEEEeCcCCCccEEEeCC
Confidence            3     344544 345688999999997  35667789999999999887          5555555665556665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=1.3e-13  Score=115.83  Aligned_cols=223  Identities=12%  Similarity=0.018  Sum_probs=137.3

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeee------cCCceeEEEeeCCcccCCCCCccEEEEee------------CCCcEEE
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKG------HTDWIRSLDFSLPVCTSGEAISILLVSSS------------QDKVIRI   63 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~~~~~~~~l~t~~------------~dg~i~i   63 (351)
                      ++.++.|++||+.+ ++.  +..+..      +...+..++|+        ++|+++++++            .++.+.+
T Consensus        58 ~~~~~~v~~~d~~t-~~~--~~~~~~~~~~~~~~~~~~~v~~s--------~DG~~l~v~~~~~~~~~~~~~~~~~~i~~  126 (346)
T d1jmxb_          58 NNHYGDIYGIDLDT-CKN--TFHANLSSVPGEVGRSMYSFAIS--------PDGKEVYATVNPTQRLNDHYVVKPPRLEV  126 (346)
T ss_dssp             ETTTTEEEEEETTT-TEE--EEEEESCCSTTEEEECSSCEEEC--------TTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             ECCCCcEEEEeCcc-Cee--eeeecccccccccCCceEEEEEe--------cCCCEEEEEecCCcceeeeeccCcceEEE
Confidence            45789999999998 643  333332      22346789999        8899888775            4678999


Q ss_pred             EecCCCcccceeeccc-ccceeeeEeeecCCeEEecCCceeE-----EEEEeccccccceEEEEecCCCCCC--------
Q 048511           64 WKLALRGSSANTQSTY-RKEVISLASYIEGPVLVAGSSSYQV-----SVESLLIGHEDWVYSVQWEPPSTAP--------  129 (351)
Q Consensus        64 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~h~~~v~~l~~~p~~~~~--------  129 (351)
                      |+..++.......... ......+.+++++.+++.+.....+     .....+..+ .....+.++|.....        
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  205 (346)
T d1jmxb_         127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRH  205 (346)
T ss_dssp             EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTC
T ss_pred             EecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCC
Confidence            9988776554433222 2233444555666655554332211     111222211 112222233211000        


Q ss_pred             ------------CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC
Q 048511          130 ------------SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG  197 (351)
Q Consensus       130 ------------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  197 (351)
                                  .....      ++++..+..+.+||+..  +.......    ..+...+..+.+++++.+++.... +
T Consensus       206 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~  272 (346)
T d1jmxb_         206 EFSMLYTIARFKDDKQD------PATADLLYGYLSVDLKT--GKTHTQEF----ADLTELYFTGLRSPKDPNQIYGVL-N  272 (346)
T ss_dssp             EEEEEEEEEEC-------------CCCEEEEEEEEEETTT--CCEEEEEE----EECSSCEEEEEECSSCTTEEEEEE-S
T ss_pred             ceEeeeeeeeeccCcee------EeeccCCceEEEEECCC--CceEEEEe----ecccceeEEEEEeCCCCEEEEecC-C
Confidence                        11112      44455667788888877  44333222    245667888999999888876654 5


Q ss_pred             eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .|.+||..++     +.+..+. +...+.+++|+|||++|++++.|+.|++||..+.+
T Consensus       273 ~v~v~d~~~~-----~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         273 RLAKYDLKQR-----KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EEEEEETTTT-----EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             eEEEEECCCC-----cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            7999999886     3344443 44578999999999999999999999999998887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2e-12  Score=107.99  Aligned_cols=235  Identities=14%  Similarity=0.170  Sum_probs=149.7

Q ss_pred             cEEEEeeCCCcEEEEecCCCccccee-ecccccceeeeEeeecCCeEEec-CCceeEEEEEec-----------cccccc
Q 048511           50 ILLVSSSQDKVIRIWKLALRGSSANT-QSTYRKEVISLASYIEGPVLVAG-SSSYQVSVESLL-----------IGHEDW  116 (351)
Q Consensus        50 ~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-----------~~h~~~  116 (351)
                      ..+++++.|++|++|+++....+... .......+..++|+|+|++|+++ ..++.+..+..-           ..+...
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            35678889999999999865443322 22345678899999999988654 446666555421           112344


Q ss_pred             eEEEEecCCCCCCCCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511          117 VYSVQWEPPSTAPSDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       117 v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                      +..++|+      +|+++      |++++. ++.|.+|+...  .........   ..+...+.++.++|+++++++++.
T Consensus        85 p~~l~~s------pDg~~------l~v~~~~~~~v~~~~~~~--~~~~~~~~~---~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          85 LTHISTD------HQGQF------VFVGSYNAGNVSVTRLED--GLPVGVVDV---VEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             CSEEEEC------TTSSE------EEEEETTTTEEEEEEEET--TEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ceEEEEc------CCCCE------EeecccCCCceeeecccc--ccceecccc---cCCCccceEEEeeecceeeecccc
Confidence            6679999      78988      888775 77899999886  333333221   244556778999999998888774


Q ss_pred             -CCeEEEEEcccCcccCcccc-cccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccCccceEEec---c
Q 048511          196 -GGAFHLWRNVGVDIDNWQPQ-KVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMGENSWHEVA---R  269 (351)
Q Consensus       196 -dg~i~~~d~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~---~  269 (351)
                       +..|.+|+............ ............++|++++.+++... ..+...+|+........   .....+.   .
T Consensus       148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~  224 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI---ECVQTLDMMPE  224 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC---EEEEEEECSCT
T ss_pred             ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce---eeeeeeeeeec
Confidence             46899999866432100000 01112344568899999998876554 45677888765443211   1111111   1


Q ss_pred             ccccccceeEEEEeeeCCCcE-EEEecCCCeEEEEecC
Q 048511          270 PQVHGHDINCVTIIQGKGNHR-FVSGADEKVARVFEAP  306 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~v~vw~~~  306 (351)
                      ..........+++++  ++++ ++++..++.+.+|++.
T Consensus       225 ~~~~~~~~~~~~~s~--d~~~~~~~~~~~~~~~~~~~~  260 (333)
T d1ri6a_         225 NFSDTRWAADIHITP--DGRHLYACDRTASLITVFSVS  260 (333)
T ss_dssp             TCCSCCCEEEEEECT--TSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCccccceeEEEec--ccCceeeecccCCeEEEEEEc
Confidence            112233466778888  6664 4566678899999976

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=5.7e-12  Score=107.07  Aligned_cols=238  Identities=6%  Similarity=-0.075  Sum_probs=145.9

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCCce-------eEEEeeCCcccCCCCCccEEEEe--eCCCcEEEEecCCCccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTDWI-------RSLDFSLPVCTSGEAISILLVSS--SQDKVIRIWKLALRGSS   72 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~~V-------~~l~~~~~~~~~~~~~~~~l~t~--~~dg~i~iwd~~~~~~~   72 (351)
                      +..++.|.+||..+ ++  .+..+..+....       ..+.|+        ++++.++..  ..++.+.+|+....+..
T Consensus        93 ~~~~~~v~v~D~~t-~~--~~~~~~~~~~~~~~~~~~~~~~~~s--------~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          93 GKRTDYVEVFDPVT-FL--PIADIELPDAPRFDVGPYSWMNANT--------PNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             cccceEEEEEECCC-Cc--EEEEEecCCcceeEeccCCCcEEEE--------eCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence            45688999999998 64  344555454433       446777        667665544  34567888888766543


Q ss_pred             ceeecccccceeeeEeeecCCeE-EecCCceeEEEEEeccc--------------cccceEEEEecCCCCCCCCCcccCC
Q 048511           73 ANTQSTYRKEVISLASYIEGPVL-VAGSSSYQVSVESLLIG--------------HEDWVYSVQWEPPSTAPSDGVSCQQ  137 (351)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~--------------h~~~v~~l~~~p~~~~~~~~~~~~~  137 (351)
                      ....     ....+.+++++..+ ++...++.+.++..-.+              +......+.+.      .++.    
T Consensus       162 ~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----  226 (373)
T d2madh_         162 QLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN------KSGR----  226 (373)
T ss_pred             EEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC------CCce----
Confidence            3322     34567788887654 34555555544432111              11112233333      3333    


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEE----------EEEeeCCeEEEE
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSI----------LAHGYGGAFHLW  202 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l----------~~~~~dg~i~~~  202 (351)
                         ++..+.++.+.+|+................     ..........+++++++..+          ++...++.+.+|
T Consensus       227 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         227 ---IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             ---EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence               566678899999998873221122111000     00111223345566665544          445567789999


Q ss_pred             EcccCcccCcccccccccccccEEEEEeecCCCE--EEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEE
Q 048511          203 RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDY--LLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCV  280 (351)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (351)
                      |..+++     .+..+. +...+..++|+|||+.  +++++.|+.|+|||+.+++          .+..+..++...+.+
T Consensus       304 d~~t~~-----~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~----------~~~~~~~~g~~P~~l  367 (373)
T d2madh_         304 TGLVGQ-----TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD----------QDQSTVELGSGPQVL  367 (373)
T ss_pred             ECCCCc-----EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC----------EEEEECCCCCCCcEE
Confidence            998873     344443 5667899999999984  4678899999999999988          666776777778888


Q ss_pred             EEee
Q 048511          281 TIIQ  284 (351)
Q Consensus       281 ~~~~  284 (351)
                      ++.+
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            7754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=4.1e-13  Score=114.36  Aligned_cols=269  Identities=9%  Similarity=-0.031  Sum_probs=159.9

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEee----------CCCcEEEEecCCCcccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSS----------QDKVIRIWKLALRGSSAN   74 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~   74 (351)
                      +..|.+||..+ +  ..+..+.++...  .++|+        ++++.|++++          .|++|++||..+.+....
T Consensus        45 ~~~~~~~d~~~-~--~~~~~~~~~~~~--~~a~s--------pDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~  111 (368)
T d1mdah_          45 TTENWVSCAGC-G--VTLGHSLGAFLS--LAVAG--------HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             SEEEEEEETTT-T--EEEEEEEECTTC--EEEEC--------TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             cceEEEEeCCC-C--cEEEEEeCCCCC--cceEC--------CCCCEEEEEcccCccccccccCCeEEEEECCCCcEeee
Confidence            34566778887 6  445566666544  58899        8899888764          477899999999887665


Q ss_pred             eeccc------ccceeeeEeeecCCeEEecC-CceeEEEEEeccccccceEEEEecCCCCC-C-CCCcccCCCceeEEee
Q 048511           75 TQSTY------RKEVISLASYIEGPVLVAGS-SSYQVSVESLLIGHEDWVYSVQWEPPSTA-P-SDGVSCQQPSSILSAS  145 (351)
Q Consensus        75 ~~~~~------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~-~~~~~~~~~~~l~s~~  145 (351)
                      +..+.      ......++|+++|+.++++. ..+.+.++..-.+.  .+..+.. |.... . .....      ++..+
T Consensus       112 i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~~------~v~~~  182 (368)
T d1mdah_         112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS--DDQLTKS-ASCFHIHPGAAAT------HYLGS  182 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE--EEEEEEC-SSCCCCEEEETTE------EECCC
T ss_pred             ecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc--EeEEeec-cCcceEccCCCce------EEEEc
Confidence            54322      22344789999999888764 45666555432221  1111111 10000 0 11122      66777


Q ss_pred             cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccccc-----
Q 048511          146 MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSG-----  220 (351)
Q Consensus       146 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-----  220 (351)
                      .||.+.++++.......... .......+...+....+.+++..+.+.  ++.++++++......   .......     
T Consensus       183 ~Dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~---~~~~~~~~~~~~  256 (368)
T d1mdah_         183 CPASLAASDLAAAPAAAGIV-GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT---MKAAIDGNESGR  256 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEEC-CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE---EECCCCSSCTHH
T ss_pred             CCCCEEEEEecCCceeeeee-ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceE---EEeeccccccee
Confidence            88888888887632211111 101111233344566777777655543  455666666554321   1111111     


Q ss_pred             -----ccccEEEEEeecCCCEEEEEeCC---------CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeC
Q 048511          221 -----HFAAVMDISWSRSSDYLLSVSHD---------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGK  286 (351)
Q Consensus       221 -----~~~~v~~v~~sp~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (351)
                           .......++++|++..++....+         ..|.+||..+++          .+..+. ++..+..++|+|  
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~----------~~~~~~-~~~~~~~~a~sp--  323 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----------TSGPIS-NGHDSDAIIAAQ--  323 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----------EEECCE-EEEEECEEEECC--
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc----------EeEEec-CCCceeEEEECC--
Confidence                 11223457889988877654322         358999998887          444432 345689999999  


Q ss_pred             CCc--EEEEecCCCeEEEEecC-chhhhcee
Q 048511          287 GNH--RFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       287 ~~~--~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      |++  +++++..|+.|++||.. ++.++++.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            775  46788899999999976 77777665

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=1.9e-12  Score=110.41  Aligned_cols=282  Identities=10%  Similarity=0.032  Sum_probs=166.6

Q ss_pred             CCCCCceEEEEEccCCCceEEEEeeee------------------------------cCCceeEEEeeCCcccCCCCCcc
Q 048511            1 MGGLDNKIHLYRGQRTGKFVRACELKG------------------------------HTDWIRSLDFSLPVCTSGEAISI   50 (351)
Q Consensus         1 tg~~dg~i~vw~~~~~~~~~~~~~~~~------------------------------h~~~V~~l~~~~~~~~~~~~~~~   50 (351)
                      +|+.+|.|+||++.+ .+  .+.++.-                              |.-......+.        +||+
T Consensus        16 Sgg~sG~V~V~dlpS-~r--~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt--------pDGr   84 (441)
T d1qnia2          16 SGGHQGEVRVLGVPS-MR--ELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR--------YDGK   84 (441)
T ss_dssp             ECBTTCCEEEEEETT-TE--EEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE--------EEEE
T ss_pred             eCCCCCcEEEEeCCC-Cc--EEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc--------CCCC
Confidence            478899999999987 53  2223211                              22223334445        7899


Q ss_pred             EEEEe-eCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEe--cCCc--------------eeEEEEEecccc
Q 048511           51 LLVSS-SQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVA--GSSS--------------YQVSVESLLIGH  113 (351)
Q Consensus        51 ~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~--------------~~~~~~~~~~~h  113 (351)
                      +|+.. ..+.+|.++|+.+.+....+..+.......+.++++|+.+.+  ....              .....+..+...
T Consensus        85 ~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE  164 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence            88655 578899999999988777666666678888999999885433  1111              111111111111


Q ss_pred             c----------cceEEEEecCCCCCCCCCcccCCCceeEEeecC------------------------------------
Q 048511          114 E----------DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD------------------------------------  147 (351)
Q Consensus       114 ~----------~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d------------------------------------  147 (351)
                      +          .....+.++      +++++      +++.+.+                                    
T Consensus       165 t~~v~~qI~v~~~p~~v~~s------pdGk~------a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         165 TMDVAWQVIVDGNLDNTDAD------YTGKY------ATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             TCSEEEEEEESSCCCCEEEC------SSSSE------EEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cceeeEEEecCCCccceEEC------CCCCE------EEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence            1          234567777      67776      5554432                                    


Q ss_pred             -----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEE-EeeCCeEEEEEcccCccc---Cccccccc
Q 048511          148 -----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILA-HGYGGAFHLWRNVGVDID---NWQPQKVP  218 (351)
Q Consensus       148 -----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~---~~~~~~~~  218 (351)
                           +.+.+++...  ...+..+..     . .....+.++|||+++++ +..+++|.+||+.+-...   .......+
T Consensus       233 ~v~~~~v~vvd~~~~--~~v~~~IPv-----g-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         233 TIGDSKVPVVDGRGE--SEFTRYIPV-----P-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             CCTTCCCCEEECSSS--CSSEEEECC-----B-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             EeCCCCcEEEEcccC--CceEEEEeC-----C-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence                 3334443333  333333331     1 22456899999998765 557899999998753210   00111111


Q ss_pred             cccc---ccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccC---ccceEE--eccccccccceeEEEEeeeCCCcE
Q 048511          219 SGHF---AAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMG---ENSWHE--VARPQVHGHDINCVTIIQGKGNHR  290 (351)
Q Consensus       219 ~~~~---~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~  290 (351)
                      .++.   -.....+|.++|..+.+..-|..|..|++.........   ...+..  +.-..+|...+.+.+++|  ||++
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p--dGk~  382 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA--DGKW  382 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC--CCCE
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC--CCcE
Confidence            1111   12344589999988888889999999997422110000   012221  112247888888899999  9999


Q ss_pred             EEEe---cCCCe----------EEEEecCchhhhceee
Q 048511          291 FVSG---ADEKV----------ARVFEAPLSFLKTLNH  315 (351)
Q Consensus       291 l~s~---~~dg~----------v~vw~~~~~~~~~~~~  315 (351)
                      |+++   +.|+.          -.+.|+.|..++.+..
T Consensus       383 l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~  420 (441)
T d1qnia2         383 LVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHD  420 (441)
T ss_dssp             EEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEE
T ss_pred             EEecCccccccCcCCCCCCCccceeEEecCCeEEEEec
Confidence            9999   66654          3456776655554443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=6.9e-12  Score=106.60  Aligned_cols=223  Identities=7%  Similarity=-0.063  Sum_probs=133.1

Q ss_pred             CCCCceEEEEEccCCCceEEEEeeeecCC-------ceeEEEeeCCcccCCCCCccEEEEee-CCCcEEEEecCCCcccc
Q 048511            2 GGLDNKIHLYRGQRTGKFVRACELKGHTD-------WIRSLDFSLPVCTSGEAISILLVSSS-QDKVIRIWKLALRGSSA   73 (351)
Q Consensus         2 g~~dg~i~vw~~~~~~~~~~~~~~~~h~~-------~V~~l~~~~~~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~   73 (351)
                      |+.|+.|++||..+ ++.  +..+..|..       ....++|+        ++|++|+.+. .++.+.+||+.+.+...
T Consensus        92 g~~d~~v~v~D~~t-~~~--~~~i~~p~~~~~~~g~~p~~~a~S--------pDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          92 GKRTDYVEVFDPVT-FLP--IADIELPDAPRFSVGPRVHIIGNC--------ASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             SSEEEEEEEECTTT-CCE--EEEEEETTSCSCCBSCCTTSEEEC--------TTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             cccCCeEEEEECCC-CcE--eeeecCCccceecccCCccceEEC--------CCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            56789999999998 643  444443322       23468999        8899988775 57999999999887665


Q ss_pred             eeeccc------ccceeeeEeeecCCeEEecCCceeEEEE----EeccccccceEEEEecCCCCCCCCCcccCCCceeEE
Q 048511           74 NTQSTY------RKEVISLASYIEGPVLVAGSSSYQVSVE----SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILS  143 (351)
Q Consensus        74 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s  143 (351)
                      ......      ......+.++++|..+.....+......    .....+...+....+.      +++..      +.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~------~~~  228 (368)
T d1mdah_         161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN------YPGML------VWA  228 (368)
T ss_dssp             EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET------TTTEE------EEC
T ss_pred             EeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc------cCcEE------EEe
Confidence            443322      1122344556666665553332222111    1222333444455555      44443      433


Q ss_pred             eecCCeEEEEeccCCCcceEEEEEecc-----ccccccceEEEEEcCCCCEEEEEeeC---------CeEEEEEcccCcc
Q 048511          144 ASMDKTMMIWQPEKTTGIWMNVVTVGE-----LSHSALGFYGGHWSPDGRSILAHGYG---------GAFHLWRNVGVDI  209 (351)
Q Consensus       144 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~  209 (351)
                        ..+.+.+++................     ..........+++++++..++....+         ..|.+||..++  
T Consensus       229 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--  304 (368)
T d1mdah_         229 --VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--  304 (368)
T ss_dssp             --BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--
T ss_pred             --cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--
Confidence              3455667776652221111111000     00011122357889998877665433         35889999887  


Q ss_pred             cCcccccccccccccEEEEEeecCCCE--EEEEeCCCcEEEEcCCCcc
Q 048511          210 DNWQPQKVPSGHFAAVMDISWSRSSDY--LLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~v~~sp~~~~--l~s~~~dg~i~vwd~~~~~  255 (351)
                         +.+..+. +...+.+++|+|||+.  ++++..|+.|++||..+++
T Consensus       305 ---~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         305 ---QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ---CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             ---cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence               3455554 4467889999999973  4667789999999998887

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=2.5e-09  Score=90.24  Aligned_cols=278  Identities=10%  Similarity=0.003  Sum_probs=157.3

Q ss_pred             CceEEEEEccCC-CceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccc-eeeccccc
Q 048511            5 DNKIHLYRGQRT-GKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSA-NTQSTYRK   81 (351)
Q Consensus         5 dg~i~vw~~~~~-~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~   81 (351)
                      .+.|.++..+.+ +++..+.... .....+..|+|+        +++++|+++.. +.+..|.+....... ........
T Consensus        13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s--------~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD--------HERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC--------TTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEc--------CCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            567877655431 5554443332 345567789999        88999988765 568888876543222 22222233


Q ss_pred             ceeeeEeeecCCeE--EecC-CceeEE------------EEE-------------eccccccceEEEEecCCCCCCCCCc
Q 048511           82 EVISLASYIEGPVL--VAGS-SSYQVS------------VES-------------LLIGHEDWVYSVQWEPPSTAPSDGV  133 (351)
Q Consensus        82 ~~~~~~~~~~~~~l--~~~~-~~~~~~------------~~~-------------~~~~h~~~v~~l~~~p~~~~~~~~~  133 (351)
                      ....+.++++++.+  +... ..+.+.            ...             ........+.++.|+      |+++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s------PdG~  157 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD------PTET  157 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC------TTSS
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEEC------CCCC
Confidence            45566677777633  2221 111111            100             001112236899999      7888


Q ss_pred             ccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccC
Q 048511          134 SCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDN  211 (351)
Q Consensus       134 ~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~  211 (351)
                      +      ++++.. ...|.+|+.... +.....-... ........+.++|+|+++++++.. .+++|.+|++.......
T Consensus       158 ~------l~v~d~g~d~v~~~~~~~~-g~~~~~~~~~-~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         158 Y------LYSADLTANKLWTHRKLAS-GEVELVGSVD-APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             E------EEEEETTTTEEEEEEECTT-SCEEEEEEEE-CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             E------EEEeeCCCCEEEEEEccCC-Cceeecccee-ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE
Confidence            7      666653 457888886642 2222111111 112345689999999999886666 57899999987653211


Q ss_pred             ccccc--------------ccccccccEEEEEeecCCCEEEEEeC-C-----CcEEEEcCCCccccccCccceEEecccc
Q 048511          212 WQPQK--------------VPSGHFAAVMDISWSRSSDYLLSVSH-D-----QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       212 ~~~~~--------------~~~~~~~~v~~v~~sp~~~~l~s~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      .....              ....+......+.++|+|++|+++.. +     ..|..|++......    .....+....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~----~~~~~~~~~~  305 (365)
T d1jofa_         230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI----EKQLFLSPTP  305 (365)
T ss_dssp             EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE----EEEEEEEECS
T ss_pred             EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce----eeEeEeeEEE
Confidence            00000              01122334667899999999877642 2     23777777554310    0011111112


Q ss_pred             ccccceeEEEEeeeCCCcEE-EEecCCCeEEEEecCchhh
Q 048511          272 VHGHDINCVTIIQGKGNHRF-VSGADEKVARVFEAPLSFL  310 (351)
Q Consensus       272 ~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw~~~~~~~  310 (351)
                      ..+.....++++| .+|++| ++...++.|.+|+++.+.+
T Consensus       306 ~~G~~p~~i~~~p-~~G~~l~va~~~s~~v~v~~~~~~~l  344 (365)
T d1jofa_         306 TSGGHSNAVSPCP-WSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             SCCTTCCCEEECT-TCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             cCCCCccEEEecC-CCCCEEEEEeCCCCeEEEEEEeCCcC
Confidence            2344567899986 246655 5556889999999875443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=2.9e-10  Score=99.68  Aligned_cols=85  Identities=12%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             CCceEEEEEccCCCceEEEE---eeeecCCceeEEEeeCCcccCCCCCccEEEEeeC---------CCcEEEEecCCCcc
Q 048511            4 LDNKIHLYRGQRTGKFVRAC---ELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ---------DKVIRIWKLALRGS   71 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~---------dg~i~iwd~~~~~~   71 (351)
                      .|+.|.+||+.+ ++...+.   ++..|...|.++.|+        ||+++|+.++.         ++.+.+||+.+++.
T Consensus        34 ~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~i~~~~~S--------pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          34 QENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSIS--------PDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             SSSCEEEEETTT-CCEEEEECTTTTTTSSSCCCEEEEC--------TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             cCCcEEEEECCC-CCEEEEEchhhhhhccCccceeEEC--------CCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence            478899999999 6543322   345566889999999        89999998753         56788999998764


Q ss_pred             cceeecccccceeeeEeeecCCeEEecC
Q 048511           72 SANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      ..  ............|+|+|+.++...
T Consensus       105 ~~--l~~~~~~~~~~~~SPDG~~ia~~~  130 (470)
T d2bgra1         105 IT--EERIPNNTQWVTWSPVGHKLAYVW  130 (470)
T ss_dssp             CC--SSCCCTTEEEEEECSSTTCEEEEE
T ss_pred             cc--cccCCccccccccccCcceeeEee
Confidence            33  223345677889999999888743

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=9.6e-11  Score=102.79  Aligned_cols=161  Identities=11%  Similarity=0.072  Sum_probs=110.5

Q ss_pred             EEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---
Q 048511          119 SVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---  195 (351)
Q Consensus       119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---  195 (351)
                      .+.|.      +++++      +..  .|+.+.+||+.+  +.....+....+..+...|.++.|+||+++|+.++.   
T Consensus        21 ~~~W~------~d~~~------~~~--~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~   84 (470)
T d2bgra1          21 SLRWI------SDHEY------LYK--QENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK   84 (470)
T ss_dssp             CCEEC------SSSEE------EEE--SSSCEEEEETTT--CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             CCEeC------CCCEE------EEE--cCCcEEEEECCC--CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc
Confidence            46788      67766      553  578899999998  655544443445566678999999999999998753   


Q ss_pred             ------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCc-----cce
Q 048511          196 ------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGE-----NSW  264 (351)
Q Consensus       196 ------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~  264 (351)
                            ++.+.+||+.+++      ...+..+...+..+.|||||++||.. .++.+++|+...+.......     ..+
T Consensus        85 ~~r~s~~~~~~l~d~~~~~------~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~  157 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQ------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY  157 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTE------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             eeeeccCceEEEEECCCCc------ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccc
Confidence                  5678999999874      45667788889999999999999986 57789999998776221000     000


Q ss_pred             EEecc---ccccccceeEEEEeeeCCCcEEEEecCCCe-EEEEe
Q 048511          265 HEVAR---PQVHGHDINCVTIIQGKGNHRFVSGADEKV-ARVFE  304 (351)
Q Consensus       265 ~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~-v~vw~  304 (351)
                      .....   ..........+.|+|  ||+.|+....|.. +..|.
T Consensus       158 ~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         158 NGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEE
T ss_pred             ccccceeeeeeecCCccccEECC--CCCccceeEecCCcCceEE
Confidence            00000   000122356688999  9999998775433 44444

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.1e-07  Score=75.91  Aligned_cols=231  Identities=8%  Similarity=-0.005  Sum_probs=143.5

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEe-eCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSS-SQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      .-..|++.        ++|++.++. +..+.|..++.......... .........+++.+++.++++......+.+...
T Consensus        15 ~P~~vavd--------~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          15 SPSGVAVD--------SAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CEEEEEEC--------TTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred             CCCEEEEc--------CCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeeeeceeeeeee
Confidence            44789999        788866654 45577777766544322211 111234567888889888777655544432210


Q ss_pred             -------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          110 -------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       110 -------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                             .........++++.      +++++      +++-.....+..++...  .. ......    ........++
T Consensus        86 ~~~~~~~~~~~~~~p~~iavd------~~g~i------~v~d~~~~~~~~~~~~~--~~-~~~~~~----~~~~~p~~i~  146 (260)
T d1rwia_          86 SNNQTVLPFDGLNYPEGLAVD------TQGAV------YVADRGNNRVVKLAAGS--KT-QTVLPF----TGLNDPDGVA  146 (260)
T ss_dssp             CSCCEECCCCSCCSEEEEEEC------TTCCE------EEEEGGGTEEEEECTTC--SS-CEECCC----CSCCSCCEEE
T ss_pred             ccceeeeeeeeeeeccccccc------cccee------Eeecccccccccccccc--ce-eeeeee----cccCCcceee
Confidence                   11112456788888      67777      77666667777777654  21 111111    1122346889


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCcc
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGEN  262 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  262 (351)
                      ++++++.+++...++.|..++......     .............|++.++|+++++....+.|..++......      
T Consensus       147 ~~~~g~~~v~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~------  215 (260)
T d1rwia_         147 VDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS------  215 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTTCCE-----EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC------
T ss_pred             ecCCCCEeeecccccccccccccccee-----eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE------
Confidence            999999888888889999999876521     111123345578899999999888887788888888654431      


Q ss_pred             ceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          263 SWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                         .+... ..-.....|++++  ++.++++-..+++|+.++..
T Consensus       216 ---~~~~~-~~~~~P~~i~~d~--~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         216 ---TVLPF-TGLNTPLAVAVDS--DRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ---EECCC-CSCCCEEEEEECT--TCCEEEEEGGGTEEEEECCC
T ss_pred             ---EEEcc-CCCCCeEEEEEeC--CCCEEEEECCCCEEEEEeCC
Confidence               11111 1223467899998  78888887777888777654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.98  E-value=3.6e-09  Score=89.99  Aligned_cols=207  Identities=7%  Similarity=-0.045  Sum_probs=123.7

Q ss_pred             EEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEE------EEeccccccceEEEEecCC
Q 048511           52 LVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSV------ESLLIGHEDWVYSVQWEPP  125 (351)
Q Consensus        52 l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~h~~~v~~l~~~p~  125 (351)
                      ++|++.+|.|++|++.+++.+..+.          .|++++..... ..+...++      ...-..|.-......+.  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip----------Vfspd~~~g~g-~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt--   80 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP----------VFNVDSATGWG-ITNESKEILGGDQQYLNGDCHHPHISMTDGR--   80 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC----------SSSBCTTTCTT-TSHHHHHHHCSSSCCSCCCBCCCEEEEETTE--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEE----------eEcCCCCEEEE-ECCccceEEecccccccCcccCCCcceeccc--
Confidence            6788899999999998887765543          24555443211 11110000      01122344455666667  


Q ss_pred             CCCCCCCcccCCCcee-EEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCE--EEEEeeCC-----
Q 048511          126 STAPSDGVSCQQPSSI-LSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRS--ILAHGYGG-----  197 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--l~~~~~dg-----  197 (351)
                          +||++      | ++...+++|.++|+++  .+....+.+    .....+..++|+|+++.  ++..+.+.     
T Consensus        81 ----pDGr~------lfV~d~~~~rVavIDl~t--~k~~~ii~i----P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          81 ----YDGKY------LFINDKANTRVARIRLDI--MKTDKITHI----PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPN  144 (441)
T ss_dssp             ----EEEEE------EEEEETTTTEEEEEETTT--TEEEEEEEC----TTCCCEEEEEECCSSBCCEEEEEECSCEESSC
T ss_pred             ----CCCCE------EEEEcCCCCEEEEEECCC--CcEeeEEec----CCCCCccceEEeccCCEEEEEeccCCcccccC
Confidence                78887      6 4555788999999998  666655542    23456889999999984  44333322     


Q ss_pred             ------------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCCC---------------------
Q 048511          198 ------------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQ---------------------  244 (351)
Q Consensus       198 ------------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg---------------------  244 (351)
                                  .+..+|..+.     ....++.. ...+..+.|+|+|+++++.+.+.                     
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~-----~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n  218 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETM-----DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN  218 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTC-----SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE
T ss_pred             cccccccccccceEEeecCccc-----eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC
Confidence                        1234555553     22333322 23467789999999988776542                     


Q ss_pred             --------------------cEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEE-EEecCCCeEEEE
Q 048511          245 --------------------TTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRF-VSGADEKVARVF  303 (351)
Q Consensus       245 --------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~v~vw  303 (351)
                                          .+.|++.....          .+..+.. +.....++++|  ||+++ +++..+++|.||
T Consensus       219 ~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~----------v~~~IPv-gksPhGv~vSP--DGkyl~~~~~~~~tvsv~  285 (441)
T d1qnia2         219 VERIAAAVKAGNFKTIGDSKVPVVDGRGESE----------FTRYIPV-PKNPHGLNTSP--DGKYFIANGKLSPTVSVI  285 (441)
T ss_dssp             HHHHHHHHHTTCCBCCTTCCCCEEECSSSCS----------SEEEECC-BSSCCCEEECT--TSCEEEEECTTSSBEEEE
T ss_pred             ccceEEEecCCCEEEeCCCCcEEEEcccCCc----------eEEEEeC-CCCccCceECC--CCCEEEEeCCcCCcEEEE
Confidence                                22222221111          1111112 22357799999  88876 567799999999


Q ss_pred             ecC
Q 048511          304 EAP  306 (351)
Q Consensus       304 ~~~  306 (351)
                      |+.
T Consensus       286 d~~  288 (441)
T d1qnia2         286 AID  288 (441)
T ss_dssp             EGG
T ss_pred             Eee
Confidence            976

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.2e-07  Score=74.26  Aligned_cols=231  Identities=10%  Similarity=0.011  Sum_probs=128.1

Q ss_pred             eEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCC---cEEEEecCCCcccceeecccccce
Q 048511            7 KIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDK---VIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      .|.|-|.+. ++...   +..+...+..-+|+        |||+.||-.....   .+.+.+.......  .........
T Consensus        20 ~l~i~d~dG-~~~~~---l~~~~~~~~sP~wS--------PDGk~IAf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   85 (269)
T d2hqsa1          20 ELRVSDYDG-YNQFV---VHRSPQPLMSPAWS--------PDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHN   85 (269)
T ss_dssp             EEEEEETTS-CSCEE---EEEESSCEEEEEEC--------TTSSEEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCE
T ss_pred             EEEEEcCCC-CCcEE---EecCCCceeeeEEC--------CCCCEEEEEEeeccCcceeeeecccCcee--EEeeeeccc
Confidence            577778776 43333   33456778899999        8999998765433   3555555544332  222334466


Q ss_pred             eeeEeeecCCeEEecCCc-eeEEE--E-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEE
Q 048511           84 ISLASYIEGPVLVAGSSS-YQVSV--E-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIW  153 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~-~~~~~--~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iw  153 (351)
                      ....++|+|..++..... +....  .       ..............++      .++..     .+++...++...+|
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~g~~~i~  154 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF------PDSQN-----LAFTSDQAGRPQVY  154 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEEC------TTSSE-----EEEEECTTSSCEEE
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccc------ccccc-----ceecccccCCceEe
Confidence            678899999988763321 11111  1       1111122233344555      33332     14555555554444


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-CeEEEEEcccCcccCcccccccccccccEEEEEeec
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp  232 (351)
                      ......+.... .     ...........|+|+++.++..+.+ +...+|......    . ...+..+........|+|
T Consensus       155 ~~~~~~~~~~~-~-----~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~p~~SP  223 (269)
T d2hqsa1         155 KVNINGGAPQR-I-----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----G-GVQVLSSTFLDETPSLAP  223 (269)
T ss_dssp             EEETTSSCCEE-C-----CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----C-CEEECCCSSSCEEEEECT
T ss_pred             eeeccccccee-e-----ecccccccccccccccceeEEEeecCCceeeeEeeccc----c-cceEeecCccccceEECC
Confidence            44331132211 1     1344556778999999988877655 444444443321    1 122223445567789999


Q ss_pred             CCCEEEEEeC---CCcEEEEcCCCccccccCccceEEeccccccccceeEEEEee
Q 048511          233 SSDYLLSVSH---DQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQ  284 (351)
Q Consensus       233 ~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (351)
                      ||+.|+..+.   ...|+++++..+.          . ..+......+...+|+|
T Consensus       224 DG~~i~f~s~~~~~~~l~~~~~dg~~----------~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         224 NGTMVIYSSSQGMGSVLNLVSTDGRF----------K-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTSCC----------E-EECCCSSSEEEEEEECC
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCC----------E-EEEeCCCCcEEeEEeCC
Confidence            9999875543   3468889987664          1 12223345577888988

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=5.1e-07  Score=73.68  Aligned_cols=237  Identities=10%  Similarity=-0.032  Sum_probs=143.2

Q ss_pred             EEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecC
Q 048511           20 VRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGS   99 (351)
Q Consensus        20 ~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (351)
                      +.+..+.. ...+..+++.        ++|+++++...+++|..|+......   ...........+++.++|+++++..
T Consensus        19 ~v~~~~p~-~~~~e~iAv~--------pdG~l~vt~~~~~~I~~i~p~g~~~---~~~~~~~~~~gla~~~dG~l~v~~~   86 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASA--------PDGTIFVTNHEVGEIVSITPDGNQQ---IHATVEGKVSGLAFTSNGDLVATGW   86 (302)
T ss_dssp             EEEEEECT-TCCEEEEEEC--------TTSCEEEEETTTTEEEEECTTCCEE---EEEECSSEEEEEEECTTSCEEEEEE
T ss_pred             cEEEECCC-CCCcCCEEEC--------CCCCEEEEeCCCCEEEEEeCCCCEE---EEEcCCCCcceEEEcCCCCeEEEec
Confidence            34455543 2257889999        8899999999999888888654322   1222345778899999999888754


Q ss_pred             CceeEEEEEec-----------cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEe
Q 048511          100 SSYQVSVESLL-----------IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTV  168 (351)
Q Consensus       100 ~~~~~~~~~~~-----------~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  168 (351)
                      ....+..+...           .......+.+.+.      +++++      +++-+.++.+..+|...  +........
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~------~~g~~------~v~~~~~~~i~~~~~~~--~~~~~~~~~  152 (302)
T d2p4oa1          87 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL------SDTQY------LTADSYRGAIWLIDVVQ--PSGSIWLEH  152 (302)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES------SSSEE------EEEETTTTEEEEEETTT--TEEEEEEEC
T ss_pred             CCceEEEEEecccccceeeccccCCccccceeEEc------cCCCE------EeeccccccceeeeccC--CcceeEecC
Confidence            44433222211           1123457788888      78888      88888888888888876  332211111


Q ss_pred             c-----cccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          169 G-----ELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       169 ~-----~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                      .     ...........+.++. +..+++....+.|..++......   ...............+++.++|+++++...+
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~pdgia~d~dG~l~va~~~~  228 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDK---PGEPEIFVEQTNIDDFAFDVEGNLYGATHIY  228 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSC---BCCCEEEEESCCCSSEEEBTTCCEEEECBTT
T ss_pred             CccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccc---ccccccccCCCCCcceEECCCCCEEEEEcCC
Confidence            0     0111122345666653 33455556778888888765421   1111111123345679999999988888888


Q ss_pred             CcEEEEcCCCccccccCccceEEeccccccccceeEEEEeee-CCCcEEEEec
Q 048511          244 QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQG-KGNHRFVSGA  295 (351)
Q Consensus       244 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~  295 (351)
                      +.|..++.....         ..+..........++++|... .|++.|..++
T Consensus       229 ~~V~~i~p~G~~---------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         229 NSVVRIAPDRST---------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             CCEEEECTTCCE---------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CcEEEECCCCCE---------EEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            999999875433         123222223345789999431 1566565443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=1.6e-06  Score=69.81  Aligned_cols=231  Identities=10%  Similarity=0.070  Sum_probs=140.5

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc-----cccceeeeEeeecC-CeEEec-CCcee
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST-----YRKEVISLASYIEG-PVLVAG-SSSYQ  103 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~l~~~-~~~~~  103 (351)
                      ....|++.        ++++++++-...+.|++||.+ +..+......     .......+++..+. ..+++. .....
T Consensus        24 ~P~gvavd--------~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   94 (279)
T d1q7fa_          24 EPSGVAVN--------AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ   94 (279)
T ss_dssp             CEEEEEEC--------TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccEEEEc--------CCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccc
Confidence            35789999        788888887778899999965 3333222111     01122233333332 233322 22222


Q ss_pred             EEEEE-------ec-cccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccc
Q 048511          104 VSVES-------LL-IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSA  175 (351)
Q Consensus       104 ~~~~~-------~~-~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +....       .+ .........+++.      +++.+      +++....+.+.+++..   +..+..+..   ..+.
T Consensus        95 i~~~~~~g~~~~~~~~~~~~~p~~~avd------~~G~i------~v~~~~~~~~~~~~~~---g~~~~~~g~---~~~~  156 (279)
T d1q7fa_          95 IQIYNQYGQFVRKFGATILQHPRGVTVD------NKGRI------IVVECKVMRVIIFDQN---GNVLHKFGC---SKHL  156 (279)
T ss_dssp             EEEECTTSCEEEEECTTTCSCEEEEEEC------TTSCE------EEEETTTTEEEEECTT---SCEEEEEEC---TTTC
T ss_pred             cccccccccceeecCCCcccccceeccc------cCCcE------EEEeeccceeeEeccC---Cceeecccc---cccc
Confidence            22211       11 1223445677777      67776      7776667778887755   444444431   2344


Q ss_pred             cceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc--ccccccEEEEEeecCCCEEEEEeC-CCcEEEEcCC
Q 048511          176 LGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP--SGHFAAVMDISWSRSSDYLLSVSH-DQTTRVFAPW  252 (351)
Q Consensus       176 ~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vwd~~  252 (351)
                      .....+++.++++.+++....+.|++||....      .+.++  .+......+|++.++|+++++-.. ++.|.+|+..
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCCc------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence            56788999999998888888899999998663      23333  234456789999999998776544 4579999853


Q ss_pred             CccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          253 KNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                       ++.       ...+.. .......+.+++.+  ++.++++ +.+..|++|...
T Consensus       231 -G~~-------~~~~~~-~~~~~~p~~vav~~--dG~l~V~-~~n~~v~~fr~~  272 (279)
T d1q7fa_         231 -GQL-------ISALES-KVKHAQCFDVALMD--DGSVVLA-SKDYRLYIYRYV  272 (279)
T ss_dssp             -SCE-------EEEEEE-SSCCSCEEEEEEET--TTEEEEE-ETTTEEEEEECS
T ss_pred             -CCE-------EEEEeC-CCCCCCEeEEEEeC--CCcEEEE-eCCCeEEEEEee
Confidence             331       111211 12223478899998  8876665 568899999854

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=5.9e-07  Score=73.65  Aligned_cols=227  Identities=10%  Similarity=0.028  Sum_probs=131.2

Q ss_pred             CceEEEEEccCCCceEEEEeeee--cCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccc---
Q 048511            5 DNKIHLYRGQRTGKFVRACELKG--HTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTY---   79 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~---   79 (351)
                      +|+|..||..+ +..........  -.+.-..|.|.        ++++.|+++...+.|...+..............   
T Consensus        45 ~g~I~r~d~~~-~~~~~~~~~~~~~~~g~P~Gl~~~--------~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~  115 (314)
T d1pjxa_          45 AGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCD--------RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRR  115 (314)
T ss_dssp             CCEEEEECTTT-CCEEEEECCEETTEECCEEEEEEC--------SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCB
T ss_pred             CCEEEEEECCC-CcEEEEECCccccCCCcceeEEEe--------CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccc
Confidence            45677777776 54332222111  11235679999        888888888777778888876543222111111   


Q ss_pred             ccceeeeEeeecCCeEEecCC---------------ceeEEEEE------eccccccceEEEEecCCCCCCCCC-cccCC
Q 048511           80 RKEVISLASYIEGPVLVAGSS---------------SYQVSVES------LLIGHEDWVYSVQWEPPSTAPSDG-VSCQQ  137 (351)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~~------~~~~h~~~v~~l~~~p~~~~~~~~-~~~~~  137 (351)
                      -.....+++.++|.+.++...               .+.+..+.      .+...-...+.++|+|...  ... .+   
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d--~~~~~l---  190 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMND--GRPYQL---  190 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTT--SCEEEE---
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCC--cceeEE---
Confidence            112456788899988776321               11111110      0111112235678884210  001 23   


Q ss_pred             CceeEEeecCCeEEEEeccCCCcceEEEEEecccc-ccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCccccc
Q 048511          138 PSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELS-HSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQK  216 (351)
Q Consensus       138 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  216 (351)
                         +++-+..+.|..||+... +............ ........+++..+|++.++....+.|.+||.+++     ....
T Consensus       191 ---yv~d~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g-----~~~~  261 (314)
T d1pjxa_         191 ---IVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-----QPKM  261 (314)
T ss_dssp             ---EEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-----SCSE
T ss_pred             ---EEEeecccceEEeeccCc-cccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC-----EEEE
Confidence               555667888999988752 2222111111111 12234567999999998887778899999998876     3344


Q ss_pred             ccccccccEEEEEeecCCCE-EEEEeCCCcEEEEcCCCc
Q 048511          217 VPSGHFAAVMDISWSRSSDY-LLSVSHDQTTRVFAPWKN  254 (351)
Q Consensus       217 ~~~~~~~~v~~v~~sp~~~~-l~s~~~dg~i~vwd~~~~  254 (351)
                      .+......+++++|.|+++. +++.+.++.|..+++...
T Consensus       262 ~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         262 RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            44445567899999999874 566677888888887443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=1.7e-06  Score=70.86  Aligned_cols=235  Identities=11%  Similarity=0.044  Sum_probs=137.3

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeC-------CCcEEEEecCCCcccceeec---ccccceeeeEeeecCCeEEecCC
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQ-------DKVIRIWKLALRGSSANTQS---TYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~-------dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      ..-.++|.        ++|+++++...       +++|..||..++........   ........+++.+++..+++++.
T Consensus        19 g~EGpa~d--------~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~   90 (314)
T d1pjxa_          19 GAEGPVFD--------KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             TCEEEEEC--------TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET
T ss_pred             CCeEeEEe--------CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC
Confidence            34567888        78887776432       46788888877654322211   11223567899999987776654


Q ss_pred             ceeEEEEEe-------cccc-c----cceEEEEecCCCCCCCCCcccCCCceeEEeec---------------CCeEEEE
Q 048511          101 SYQVSVESL-------LIGH-E----DWVYSVQWEPPSTAPSDGVSCQQPSSILSASM---------------DKTMMIW  153 (351)
Q Consensus       101 ~~~~~~~~~-------~~~h-~----~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~---------------d~~i~iw  153 (351)
                      ...+..+..       +... .    ...+.+++.      ++|++      .++-..               +|.|..+
T Consensus        91 ~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d------~~G~l------yvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          91 RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD------YEGNL------WITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC------TTSCE------EEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             CCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC------CCCCE------EEecCccCcccccccceeccCCceEEEE
Confidence            433332221       1100 0    124667787      67776      665321               2234333


Q ss_pred             eccCCCcceEEEEEeccccccccceEEEEEcCCCC----EEE-EEeeCCeEEEEEcccCcc-cCccccccccc-ccccEE
Q 048511          154 QPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGR----SIL-AHGYGGAFHLWRNVGVDI-DNWQPQKVPSG-HFAAVM  226 (351)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~l~-~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~-~~~~v~  226 (351)
                      +..   +.......      .-.....++|+|++.    .|+ +-+..+.|..||+..... ...+....+.+ ......
T Consensus       159 ~~d---g~~~~~~~------~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         159 TTD---GQMIQVDT------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CTT---SCEEEEEE------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             eec---CceeEeeC------CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            332   22222111      112246789988764    444 445678999998864321 00011122222 223467


Q ss_pred             EEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCc-EEEEecCCCeEEEEec
Q 048511          227 DISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNH-RFVSGADEKVARVFEA  305 (351)
Q Consensus       227 ~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~v~vw~~  305 (351)
                      .+++..+|+++++....+.|.+||...+.          ...........+++++|.+  +++ ++++.+.++.|...++
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~----------~~~~i~~p~~~~t~~afg~--d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQ----------PKMRIRCPFEKPSNLHFKP--QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBS----------CSEEEECSSSCEEEEEECT--TSSEEEEEETTTTEEEEEEC
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCE----------EEEEEECCCCCEEEEEEeC--CCCEEEEEECCCCcEEEEEC
Confidence            89999999988887778999999987665          1222223345688999988  665 6788888999988886


Q ss_pred             C
Q 048511          306 P  306 (351)
Q Consensus       306 ~  306 (351)
                      +
T Consensus       298 ~  298 (314)
T d1pjxa_         298 Q  298 (314)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=7.3e-06  Score=67.13  Aligned_cols=214  Identities=9%  Similarity=-0.006  Sum_probs=125.6

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEec
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLL  110 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  110 (351)
                      .+-.++|.        ++|++.++-...+.|..|+.........                                   .
T Consensus        41 ~lEG~~~D--------~~G~Ly~~D~~~g~I~ri~p~g~~~~~~-----------------------------------~   77 (319)
T d2dg1a1          41 QLEGLNFD--------RQGQLFLLDVFEGNIFKINPETKEIKRP-----------------------------------F   77 (319)
T ss_dssp             CEEEEEEC--------TTSCEEEEETTTCEEEEECTTTCCEEEE-----------------------------------E
T ss_pred             CcEeCEEC--------CCCCEEEEECCCCEEEEEECCCCeEEEE-----------------------------------E
Confidence            45688998        7888777777788888887765432211                                   1


Q ss_pred             cccccceEEEEecCCCCCCCCCcccCCCceeEEeecC----CeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCC
Q 048511          111 IGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMD----KTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPD  186 (351)
Q Consensus       111 ~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~  186 (351)
                      .........+++.      ++|++      +++...+    +.+...+...  ........   ..........+++.++
T Consensus        78 ~~~~~~p~gla~~------~dG~l------~va~~~~~~~~~~i~~~~~~~--~~~~~~~~---~~~~~~~~nd~~~d~~  140 (319)
T d2dg1a1          78 VSHKANPAAIKIH------KDGRL------FVCYLGDFKSTGGIFAATENG--DNLQDIIE---DLSTAYCIDDMVFDSK  140 (319)
T ss_dssp             ECSSSSEEEEEEC------TTSCE------EEEECTTSSSCCEEEEECTTS--CSCEEEEC---SSSSCCCEEEEEECTT
T ss_pred             eCCCCCeeEEEEC------CCCCE------EEEecCCCccceeEEEEcCCC--ceeeeecc---CCCcccCCcceeEEec
Confidence            1123456788888      78876      6654332    2344444443  33222221   1122334678999999


Q ss_pred             CCEEEEEee------CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEE-EEEeCCCcEEEEcCCCcccccc
Q 048511          187 GRSILAHGY------GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYL-LSVSHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       187 ~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~s~~~dg~i~vwd~~~~~~~~~  259 (351)
                      |++.++...      .+.+..++....      .+..+...-...+.++|+|+++.| ++-+..+.|+.||+....... 
T Consensus       141 G~l~vtd~~~~~~~~~g~v~~~~~dg~------~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~-  213 (319)
T d2dg1a1         141 GGFYFTDFRGYSTNPLGGVYYVSPDFR------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-  213 (319)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSC------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-
T ss_pred             cceeecccccccccCcceeEEEecccc------eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee-
Confidence            986665322      133544444432      122222233456789999999866 444567899999886432100 


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                       ...................+++..  +|++.++....+.|.+|+..|+.+..+.
T Consensus       214 -~~~~~~~~~~~~~~~~PdGl~vD~--~G~l~Va~~~~g~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         214 -QPFGATIPYYFTGHEGPDSCCIDS--DDNLYVAMYGQGRVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             -EEEEEEEEEECCSSSEEEEEEEBT--TCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             -ccccceeeeccCCccceeeeeEcC--CCCEEEEEcCCCEEEEECCCCcEEEEEe
Confidence             000011111111112356789988  8999999889999999998888776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.72  E-value=7.4e-06  Score=65.71  Aligned_cols=181  Identities=13%  Similarity=0.114  Sum_probs=113.7

Q ss_pred             ccEEEE-eeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEE-------Ee--ccccccceE
Q 048511           49 SILLVS-SSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVE-------SL--LIGHEDWVY  118 (351)
Q Consensus        49 ~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~--~~~h~~~v~  118 (351)
                      +..+++ .+.++.|..++.. +................++..++|.++++......+...       ..  ...+.....
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred             cccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccc
Confidence            334443 3455667777654 333333322333455677788888877775544433221       11  233455677


Q ss_pred             EEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee-CC
Q 048511          119 SVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY-GG  197 (351)
Q Consensus       119 ~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-dg  197 (351)
                      .+++.      +++++      +++....+.|++||..   +..+..+-   ..+.......++++++|+.+++-.. ++
T Consensus       161 ~i~~d------~~g~i------~v~d~~~~~V~~~d~~---G~~~~~~g---~~g~~~~P~giavD~~G~i~Vad~~~~~  222 (279)
T d1q7fa_         161 GVVVN------DKQEI------FISDNRAHCVKVFNYE---GQYLRQIG---GEGITNYPIGVGINSNGEILIADNHNNF  222 (279)
T ss_dssp             EEEEC------SSSEE------EEEEGGGTEEEEEETT---CCEEEEES---CTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred             eeeec------cceeE------EeeeccccceeeeecC---Cceeeeec---ccccccCCcccccccCCeEEEEECCCCc
Confidence            88888      67888      8888889999999976   45554442   1233445788999999997766443 45


Q ss_pred             eEEEEEcccCcccCcccccccc--cccccEEEEEeecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          198 AFHLWRNVGVDIDNWQPQKVPS--GHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .|.+|+...      +.+..+.  ........|++.|+|.+++ ++.+..|++|......
T Consensus       223 ~v~~f~~~G------~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         223 NLTIFTQDG------QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEECTTS------CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEEECCCC------CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            799998644      2233332  2234578999999997555 5578999999986543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.71  E-value=2.1e-06  Score=68.19  Aligned_cols=187  Identities=9%  Similarity=0.006  Sum_probs=118.2

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe-
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL-  109 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-  109 (351)
                      ....|++.        ++++++++....+.+++++-.+.......  ........+++.+++++++.......+..... 
T Consensus        58 ~p~gvav~--------~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~  127 (260)
T d1rwia_          58 QPQGLAVD--------GAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG  127 (260)
T ss_dssp             SCCCEEEC--------TTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             CceEEEEc--------CCCCEEEeeeeeceeeeeeeccceeeeee--eeeeecccccccccceeEeeccccccccccccc
Confidence            35678888        77888877777777776655444332221  11235678888888887776433333322211 


Q ss_pred             -------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE
Q 048511          110 -------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH  182 (351)
Q Consensus       110 -------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~  182 (351)
                             ...-......+++.      +++++      +++...++.|..+|...  ... ..+.    ...-.....++
T Consensus       128 ~~~~~~~~~~~~~~p~~i~~~------~~g~~------~v~~~~~~~i~~~d~~~--~~~-~~~~----~~~~~~p~gi~  188 (260)
T d1rwia_         128 SKTQTVLPFTGLNDPDGVAVD------NSGNV------YVTDTDNNRVVKLEAES--NNQ-VVLP----FTDITAPWGIA  188 (260)
T ss_dssp             CSSCEECCCCSCCSCCEEEEC------TTCCE------EEEEGGGTEEEEECTTT--CCE-EECC----CSSCCSEEEEE
T ss_pred             cceeeeeeecccCCcceeeec------CCCCE------eeecccccccccccccc--cee-eeee----ccccCCCccce
Confidence                   11112345678888      67777      88888888999999875  221 1111    12234568899


Q ss_pred             EcCCCCEEEEEeeCCeEEEEEcccCcccCccccccc-ccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          183 WSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVP-SGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       183 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ++++++++++....+.|..++.....      ...+ ...-.....|+++++|.++++-..+++|+.++..
T Consensus       189 ~d~~g~l~vsd~~~~~i~~~~~~~~~------~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         189 VDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ECTTCCEEEEETTTTEEEEECTTCSC------CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eeeeeeeeeeecCCCEEEEEeCCCCe------EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            99999888877778889888776542      1111 1222456899999999888776667777766653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=3.5e-06  Score=68.55  Aligned_cols=199  Identities=14%  Similarity=0.056  Sum_probs=125.4

Q ss_pred             eeeEeeecCCeEEecCCceeEEEE------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccC
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVE------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEK  157 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  157 (351)
                      ..+++.++|+++++......+..+      ..+......+.+++|.      +++++      +++...++.+..|+...
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~------~dG~l------~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFT------SNGDL------VATGWNADSIPVVSLVK   98 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEEC------TTSCE------EEEEECTTSCEEEEEEC
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEc------CCCCe------EEEecCCceEEEEEecc
Confidence            355666677666665544444322      1223345678999999      78998      99888888898888876


Q ss_pred             CCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcc-----cccccccccccEEEEEeec
Q 048511          158 TTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQ-----PQKVPSGHFAAVMDISWSR  232 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp  232 (351)
                      ..+........    ........+++.++++++++.+.++.+..++...+....+.     ..............+.+..
T Consensus        99 ~~~~~~~~~~~----~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1          99 SDGTVETLLTL----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             TTSCEEEEEEC----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             cccceeecccc----CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence            44433322221    23345788999999998888888888888887665321000     0111112223456666654


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchh
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSF  309 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~  309 (351)
                      + .++++.+..+.|+.++........    .....    ........+++.+  +|.++++...++.|..++..++.
T Consensus       175 ~-~l~~~~~~~~~i~~~~~~~~~~~~----~~~~~----~~~~~pdgia~d~--dG~l~va~~~~~~V~~i~p~G~~  240 (302)
T d2p4oa1         175 N-FLYVSNTEKMLLLRIPVDSTDKPG----EPEIF----VEQTNIDDFAFDV--EGNLYGATHIYNSVVRIAPDRST  240 (302)
T ss_dssp             T-EEEEEETTTTEEEEEEBCTTSCBC----CCEEE----EESCCCSSEEEBT--TCCEEEECBTTCCEEEECTTCCE
T ss_pred             C-ceeeecCCCCeEEecccccccccc----ccccc----cCCCCCcceEECC--CCCEEEEEcCCCcEEEECCCCCE
Confidence            3 345566678888888876544110    00111    1223467899998  89998988889999999887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=7.3e-06  Score=65.08  Aligned_cols=216  Identities=11%  Similarity=0.042  Sum_probs=118.3

Q ss_pred             cEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCce---eEEE-------EEeccccccceEEEEecCCCCCC
Q 048511           60 VIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSY---QVSV-------ESLLIGHEDWVYSVQWEPPSTAP  129 (351)
Q Consensus        60 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-------~~~~~~h~~~v~~l~~~p~~~~~  129 (351)
                      .|.|-|...........  ....+.+.+|+|||+.|+......   .+..       ...+..+........|+      
T Consensus        20 ~l~i~d~dG~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFS------   91 (269)
T ss_dssp             EEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEEC------
T ss_pred             EEEEEcCCCCCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceec------
Confidence            35555655333322222  234567889999999998642211   1111       12334456677888999      


Q ss_pred             CCCcccCCCceeEEeec-CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCC--eEEEEEcc
Q 048511          130 SDGVSCQQPSSILSASM-DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGG--AFHLWRNV  205 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg--~i~~~d~~  205 (351)
                      +++..      ++.... ++...++............      ...........+++++..++... .++  .|.+.++.
T Consensus        92 pdg~~------i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~  159 (269)
T d2hqsa1          92 PDGSK------LAFALSKTGSLNLYVMDLASGQIRQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  159 (269)
T ss_dssp             TTSSE------EEEEECTTSSCEEEEEETTTCCEEEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCCe------eeEeeecCCccceeecccccccceee------eeccccccccccccccccceecccccCCceEeeeecc
Confidence            67776      665443 3333333333211221111      12333445566777776555444 445  45555555


Q ss_pred             cCcccCcccccccccccccEEEEEeecCCCEEEEEeCC-CcEEEE--cCCCccccccCccceEEeccccccccceeEEEE
Q 048511          206 GVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD-QTTRVF--APWKNVASLMGENSWHEVARPQVHGHDINCVTI  282 (351)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d-g~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (351)
                      ...      ...+...........|+|+++.++..+.+ +...+|  +...+.        . .+.   .+........|
T Consensus       160 ~~~------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--------~-~~~---~~~~~~~~p~~  221 (269)
T d2hqsa1         160 GGA------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------V-QVL---SSTFLDETPSL  221 (269)
T ss_dssp             SSC------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--------E-EEC---CCSSSCEEEEE
T ss_pred             ccc------ceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc--------c-eEe---ecCccccceEE
Confidence            542      33334455667778999999998766554 444444  443332        1 111   22334567889


Q ss_pred             eeeCCCcEEEEec---CCCeEEEEecCchhhhceee
Q 048511          283 IQGKGNHRFVSGA---DEKVARVFEAPLSFLKTLNH  315 (351)
Q Consensus       283 ~~~~~~~~l~s~~---~dg~v~vw~~~~~~~~~~~~  315 (351)
                      +|  ||+.|+-.+   ....|.++++.+.....+..
T Consensus       222 SP--DG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~  255 (269)
T d2hqsa1         222 AP--NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  255 (269)
T ss_dssp             CT--TSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             CC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence            99  899887444   34578889998765544433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.59  E-value=2e-05  Score=65.72  Aligned_cols=174  Identities=8%  Similarity=-0.028  Sum_probs=102.6

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeC-CCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEe
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQ-DKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESL  109 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  109 (351)
                      .+.++.|+        |++++|+++.. ...|.+|+......+....                             ... 
T Consensus       146 h~h~v~~s--------PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-----------------------------~~~-  187 (365)
T d1jofa_         146 GIHGMVFD--------PTETYLYSADLTANKLWTHRKLASGEVELVG-----------------------------SVD-  187 (365)
T ss_dssp             CEEEEEEC--------TTSSEEEEEETTTTEEEEEEECTTSCEEEEE-----------------------------EEE-
T ss_pred             cceEEEEC--------CCCCEEEEeeCCCCEEEEEEccCCCceeecc-----------------------------cee-
Confidence            46789999        88988887753 3467777765433221111                             001 


Q ss_pred             ccccccceEEEEecCCCCCCCCCcccCCCcee-EEeecCCeEEEEeccCCCcceEEEEEecc------------cccccc
Q 048511          110 LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSI-LSASMDKTMMIWQPEKTTGIWMNVVTVGE------------LSHSAL  176 (351)
Q Consensus       110 ~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~  176 (351)
                      ..........+.|+      +++++      + ++.-.+++|.+|++...............            ......
T Consensus       188 ~~~~g~gPr~i~f~------pdg~~------~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (365)
T d1jofa_         188 APDPGDHPRWVAMH------PTGNY------LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY  255 (365)
T ss_dssp             CSSTTCCEEEEEEC------TTSSE------EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred             ecCCCCceEEEEEC------CCCce------EEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccC
Confidence            11223457889999      67776      5 55556889999999774333332222110            011122


Q ss_pred             ceEEEEEcCCCCEEEEEeeC------CeEEEEEcccCcc-cCcccccccccccccEEEEEeec-CCCEEEEE-eCCCcEE
Q 048511          177 GFYGGHWSPDGRSILAHGYG------GAFHLWRNVGVDI-DNWQPQKVPSGHFAAVMDISWSR-SSDYLLSV-SHDQTTR  247 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~~~d------g~i~~~d~~~~~~-~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~-~~dg~i~  247 (351)
                      ....+.++|+|++|+++...      ..|..|++..... .....+...........+++++| +|++|+++ ..++.|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~  335 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence            35678999999999887542      3477777654311 00001111122334567799998 78987666 4679999


Q ss_pred             EEcCCCc
Q 048511          248 VFAPWKN  254 (351)
Q Consensus       248 vwd~~~~  254 (351)
                      +|++...
T Consensus       336 v~~~~~~  342 (365)
T d1jofa_         336 IYRWKDE  342 (365)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9987544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=9.2e-05  Score=60.34  Aligned_cols=107  Identities=9%  Similarity=0.025  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCCEEEEE-eeCCeEEEEEcccCcccCcc---cccccccccccEEEEEeecCCCEEEEEeCCCcEEEEcCC
Q 048511          177 GFYGGHWSPDGRSILAH-GYGGAFHLWRNVGVDIDNWQ---PQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFAPW  252 (351)
Q Consensus       177 ~i~~i~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd~~  252 (351)
                      ....++|+|+++.|+.+ +..+.|..|++.........   ..............+++.++|++.++....+.|.+||. 
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-  256 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-  256 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence            35679999999876555 46789999998643210000   00011111223568999999998888888999999996 


Q ss_pred             CccccccCccceEEeccc---cccccceeEEEEeeeCCCcEEEE
Q 048511          253 KNVASLMGENSWHEVARP---QVHGHDINCVTIIQGKGNHRFVS  293 (351)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s  293 (351)
                      .++       ....+..+   ..+...+++++|.+  +...+++
T Consensus       257 ~G~-------~l~~i~~P~~~~~~~~~~~~~~~~~--~~~~~~~  291 (319)
T d2dg1a1         257 RGY-------PIGQILIPGRDEGHMLRSTHPQFIP--GTNQLII  291 (319)
T ss_dssp             TSC-------EEEEEECTTGGGTCSCBCCEEEECT--TSCEEEE
T ss_pred             CCc-------EEEEEeCCCcCCCcCceeeeEEEeC--CCCEEEE
Confidence            444       12233222   23344588999988  5554544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.51  E-value=0.00014  Score=58.53  Aligned_cols=215  Identities=12%  Similarity=-0.012  Sum_probs=122.2

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      .+.|..||.++ ++. .+..   ....+.++++.        .++.++++ +.+ -|.++|..+++........      
T Consensus        39 ~~~I~r~d~~~-g~~-~~~~---~~~~~~~i~~~--------~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~------   97 (295)
T d2ghsa1          39 ERELHELHLAS-GRK-TVHA---LPFMGSALAKI--------SDSKQLIA-SDD-GLFLRDTATGVLTLHAELE------   97 (295)
T ss_dssp             GTEEEEEETTT-TEE-EEEE---CSSCEEEEEEE--------ETTEEEEE-ETT-EEEEEETTTCCEEEEECSS------
T ss_pred             CCEEEEEECCC-CeE-EEEE---CCCCcEEEEEe--------cCCCEEEE-EeC-ccEEeecccceeeEEeeee------
Confidence            35666677666 432 1222   24567888888        67766664 444 4778888766432111100      


Q ss_pred             eeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec----CCeEEEEeccCCCc
Q 048511           85 SLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM----DKTMMIWQPEKTTG  160 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~  160 (351)
                                               .......++.+.+.      ++|++      .++...    .+.-.+|.+..  +
T Consensus        98 -------------------------~~~~~~~~nd~~vd------~~G~i------w~~~~~~~~~~~~g~l~~~~~--g  138 (295)
T d2ghsa1          98 -------------------------SDLPGNRSNDGRMH------PSGAL------WIGTMGRKAETGAGSIYHVAK--G  138 (295)
T ss_dssp             -------------------------TTCTTEEEEEEEEC------TTSCE------EEEEEETTCCTTCEEEEEEET--T
T ss_pred             -------------------------cCCCcccceeeEEC------CCCCE------EEEeccccccccceeEeeecC--C
Confidence                                     00112346777777      67775      554432    23445666665  4


Q ss_pred             ceEEEEEeccccccccceEEEEEcCCCCEEEEEe-eCCeEEEEEcccCcccC---cccccccccccccEEEEEeecCCCE
Q 048511          161 IWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG-YGGAFHLWRNVGVDIDN---WQPQKVPSGHFAAVMDISWSRSSDY  236 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~---~~~~~~~~~~~~~v~~v~~sp~~~~  236 (351)
                      .......      .-.....++|+++++.++.+. ..+.|..|++.......   ......+.+..+....+++..+|++
T Consensus       139 ~~~~~~~------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl  212 (295)
T d2ghsa1         139 KVTKLFA------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  212 (295)
T ss_dssp             EEEEEEE------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             cEEEEee------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE
Confidence            3332221      122356789999998765554 56889999885432100   0111122334556788999999998


Q ss_pred             EEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecC
Q 048511          237 LLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGAD  296 (351)
Q Consensus       237 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  296 (351)
                      .++.-..+.|..||.. ++          .+..+......+++++|-..+...+++|.+.
T Consensus       213 Wva~~~~g~V~~~dp~-G~----------~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         213 WNARWGEGAVDRYDTD-GN----------HIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEETTTEEEEECTT-CC----------EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EeeeeCCCceEEecCC-Cc----------EeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            7776677889999964 44          2233333334589999974122345565443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=0.00057  Score=58.63  Aligned_cols=279  Identities=10%  Similarity=0.034  Sum_probs=144.8

Q ss_pred             CCceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccc--
Q 048511            4 LDNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRK--   81 (351)
Q Consensus         4 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~--   81 (351)
                      ..+.+.++|+.+ +....+.........+....|+        |+|+.||-.. ++.|.+.+...+...+........  
T Consensus        89 ~~~~~~i~d~~~-~~~~~l~~~~~~~~~l~~~~wS--------PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i  158 (465)
T d1xfda1          89 YTGYYVLSKIPH-GDPQSLDPPEVSNAKLQYAGWG--------PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVI  158 (465)
T ss_dssp             CCSEEEEEESSS-CCCEECCCTTCCSCCCSBCCBC--------SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTE
T ss_pred             ccccEEEEEccC-CceeeccCccCCccccceeeec--------cCCceEEEEe-cceEEEEecCCCceEEEecccCccee
Confidence            456788899988 6655554444445567778899        8899998776 567888887766554433322211  


Q ss_pred             ---------------ceeeeEeeecCCeEEecCCce-e---------------------------------EEEEEe---
Q 048511           82 ---------------EVISLASYIEGPVLVAGSSSY-Q---------------------------------VSVESL---  109 (351)
Q Consensus        82 ---------------~~~~~~~~~~~~~l~~~~~~~-~---------------------------------~~~~~~---  109 (351)
                                     ....+.|+|||+.|+....+. .                                 +.++..   
T Consensus       159 ~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~  238 (465)
T d1xfda1         159 YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (465)
T ss_dssp             EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             eccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence                           124667999999988732100 0                                 000110   


Q ss_pred             -----------ccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-C---CeEEEEeccCCCcceEEEEEecccccc
Q 048511          110 -----------LIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-D---KTMMIWQPEKTTGIWMNVVTVGELSHS  174 (351)
Q Consensus       110 -----------~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (351)
                                 ......-+..+.|.      +++++      ++.... +   ..|.++|..+  +.......-....-.
T Consensus       239 ~~~~~~~~~~~~~~~~~y~~~~~W~------~d~~~------~~~~~nR~q~~~~i~~~d~~t--g~~~~~~~e~~~~wv  304 (465)
T d1xfda1         239 THDLEMMPPDDPRMREYYITMVKWA------TSTKV------AVTWLNRAQNVSILTLCDATT--GVCTKKHEDESEAWL  304 (465)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEES------SSSEE------EEEEEETTSCEEEEEEEETTT--CCEEEEEEEECSSCC
T ss_pred             cEEEEEeccCcCccccceeeeeEEc------CCCeE------EEEEEccccccceEEEEcCCC--CcEEEEEEEcCCceE
Confidence                       00011125567777      56655      444322 2   2577888877  554433321110000


Q ss_pred             ccceEEEEEcCCCCEEE---EEeeCC--eEEEEEcccCccc-CcccccccccccccEEEE-EeecCCCEE-EEEeCCC--
Q 048511          175 ALGFYGGHWSPDGRSIL---AHGYGG--AFHLWRNVGVDID-NWQPQKVPSGHFAAVMDI-SWSRSSDYL-LSVSHDQ--  244 (351)
Q Consensus       175 ~~~i~~i~~~~~~~~l~---~~~~dg--~i~~~d~~~~~~~-~~~~~~~~~~~~~~v~~v-~~sp~~~~l-~s~~~dg--  244 (351)
                      ...-....|+++|+.++   ..-.+|  .++.+.+...... .......+....-.|..+ .|+++++.| +++..++  
T Consensus       305 ~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~  384 (465)
T d1xfda1         305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR  384 (465)
T ss_dssp             CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred             eccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCC
Confidence            00113457899988432   222333  3444444321100 002233443334456664 688877765 4554432  


Q ss_pred             cEEEEcC--CCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEec---CCCeEEEEecC-chhhhceee
Q 048511          245 TTRVFAP--WKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGA---DEKVARVFEAP-LSFLKTLNH  315 (351)
Q Consensus       245 ~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~dg~v~vw~~~-~~~~~~~~~  315 (351)
                      .-.||.+  ....       ..+++............+.|+|  ++.+++...   .--.+.+++.. ++.+..|+.
T Consensus       385 ~~hly~v~l~g~~-------~~~~lt~~~~~~~~~~~~~~S~--~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         385 RRQLYSANTVGNF-------NRQCLSCDLVENCTYFSASFSH--SMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             CCEEEEECSSTTC-------CCBCSSTTSSSSCCCCEEEECT--TSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEEECCCCC-------cceeeccccCCCCCEEEEEECC--CCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence            2234444  3322       1112222122333467899999  888887332   33467777755 666666653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.7e-06  Score=71.52  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             CCccEEEEeeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCC
Q 048511           47 AISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPS  126 (351)
Q Consensus        47 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~  126 (351)
                      +++.++.. ..+|.|.+||+.++.....+...                                .-....+....|+   
T Consensus        26 ~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~--------------------------------~~~~~~~~~~~~S---   69 (465)
T d1xfda1          26 SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK--------------------------------KIESLRAIRYEIS---   69 (465)
T ss_dssp             SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT--------------------------------TTTTTTCSEEEEC---
T ss_pred             CCCcEEEE-eCCCcEEEEECCCCCEEEEEcCc--------------------------------cccccccceeEEC---
Confidence            56666543 45788999999876542211110                                1112244556677   


Q ss_pred             CCCCCCcccCCCceeEEee---------cCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC
Q 048511          127 TAPSDGVSCQQPSSILSAS---------MDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG  197 (351)
Q Consensus       127 ~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg  197 (351)
                         +|++.      ++...         ..+.+.++|+.+  +....   +.........+....|+|+|+.+|-.. ++
T Consensus        70 ---pD~~~------vl~~~~~~~~~r~s~~~~~~i~d~~~--~~~~~---l~~~~~~~~~l~~~~wSPDG~~iafv~-~~  134 (465)
T d1xfda1          70 ---PDREY------ALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQS---LDPPEVSNAKLQYAGWGPKGQQLIFIF-EN  134 (465)
T ss_dssp             ---TTSSE------EEEEESCCCCSSSCCCSEEEEEESSS--CCCEE---CCCTTCCSCCCSBCCBCSSTTCEEEEE-TT
T ss_pred             ---CCCCe------EEEEEcccceeEeeccccEEEEEccC--Cceee---ccCccCCccccceeeeccCCceEEEEe-cc
Confidence               67776      55542         356788999988  33221   111122334455688999999887654 66


Q ss_pred             eEEEEEcccCcccCccccccccccccc-----------------EEEEEeecCCCEEEEEeC-CCcEEEEc
Q 048511          198 AFHLWRNVGVDIDNWQPQKVPSGHFAA-----------------VMDISWSRSSDYLLSVSH-DQTTRVFA  250 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~~~~~~-----------------v~~v~~sp~~~~l~s~~~-dg~i~vwd  250 (351)
                      .|.+.+..++..    ...+..+....                 -.++-|||||++||.... +..|..+.
T Consensus       135 nl~~~~~~~~~~----~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         135 NIYYCAHVGKQA----IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             EEEEESSSSSCC----EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             eEEEEecCCCce----EEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence            788887765531    11111111111                 146779999999987753 34344443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.25  E-value=0.00043  Score=55.54  Aligned_cols=173  Identities=9%  Similarity=-0.021  Sum_probs=106.5

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEe
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHG  194 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  194 (351)
                      ..+.++++.      .++.+      +++ +.+ .+.++|..+  ++....... ........+..+.+.|+|++.++..
T Consensus        59 ~~~~~i~~~------~dg~l------~va-~~~-gl~~~d~~t--g~~~~l~~~-~~~~~~~~~nd~~vd~~G~iw~~~~  121 (295)
T d2ghsa1          59 FMGSALAKI------SDSKQ------LIA-SDD-GLFLRDTAT--GVLTLHAEL-ESDLPGNRSNDGRMHPSGALWIGTM  121 (295)
T ss_dssp             SCEEEEEEE------ETTEE------EEE-ETT-EEEEEETTT--CCEEEEECS-STTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEEe------cCCCE------EEE-EeC-ccEEeeccc--ceeeEEeee-ecCCCcccceeeEECCCCCEEEEec
Confidence            457788888      67765      554 444 588999987  543322221 1112234578899999999766654


Q ss_pred             eC----CeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEE-EEeCCCcEEEEcCCCccccccCccceEEecc
Q 048511          195 YG----GAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLL-SVSHDQTTRVFAPWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       195 ~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  269 (351)
                      ..    +.-.+|.+..++      +..+...-...+.++|+++++.+. +-+..+.|..|++.......  .........
T Consensus       122 ~~~~~~~~g~l~~~~~g~------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~--~~~~~~~~~  193 (295)
T d2ghsa1         122 GRKAETGAGSIYHVAKGK------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP--TGKAEVFID  193 (295)
T ss_dssp             ETTCCTTCEEEEEEETTE------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB--SSCCEEEEE
T ss_pred             cccccccceeEeeecCCc------EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc--ccceEEEec
Confidence            32    345667666553      122222233467899999998654 55567889988875332110  001111122


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhcee
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTLN  314 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~  314 (351)
                      ..........+++..  +|++.++.-..+.|..||..++.+..+.
T Consensus       194 ~~~~~g~pdG~~vD~--~GnlWva~~~~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         194 STGIKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             CTTSSSEEEEEEECT--TSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             cCcccccccceEEcC--CCCEEeeeeCCCceEEecCCCcEeeEec
Confidence            223334477888887  8888888778889999998888777664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.99  E-value=0.00096  Score=55.44  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             eEEEEEccCCCceEEEEeee-ecCCceeEEEeeCCcccCCCCCccEEEEeeCC-CcEEEEecCCCcccceeeccccccee
Q 048511            7 KIHLYRGQRTGKFVRACELK-GHTDWIRSLDFSLPVCTSGEAISILLVSSSQD-KVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         7 ~i~vw~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      .+.+||..+ +.+....... .|........+.        .++.+++.|+.+ ..+.+||..+................
T Consensus        53 ~~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~--------~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~  123 (387)
T d1k3ia3          53 LTSSWDPST-GIVSDRTVTVTKHDMFCPGISMD--------GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ  123 (387)
T ss_dssp             EEEEECTTT-CCBCCCEEEECSCCCSSCEEEEC--------TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC
T ss_pred             EEEEEECCC-CcEeecCCCCCCcccceeEEEEe--------cCCcEEEeecCCCcceeEecCccCccccccccccccccc
Confidence            366788887 6554433332 233333456677        789899988765 57999999877654333222223334


Q ss_pred             eeEeeecCCeEEecCC
Q 048511           85 SLASYIEGPVLVAGSS  100 (351)
Q Consensus        85 ~~~~~~~~~~l~~~~~  100 (351)
                      ..+...+|++++.++.
T Consensus       124 ~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         124 SSATMSDGRVFTIGGS  139 (387)
T ss_dssp             EEEECTTSCEEEECCC
T ss_pred             ceeeecCCceeeeccc
Confidence            5666778998888764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.76  E-value=0.0023  Score=50.18  Aligned_cols=82  Identities=7%  Similarity=-0.061  Sum_probs=51.8

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeC-CC-----cEEEEecCCCcccceeecc
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQ-DK-----VIRIWKLALRGSSANTQST   78 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~-dg-----~i~iwd~~~~~~~~~~~~~   78 (351)
                      +|.|.+.|+.. ++..   .+..+.+.+...+|+        |+|+.||-... ++     .|.+++...+.........
T Consensus        20 ~~dl~~~d~~~-g~~~---~Lt~~~~~~~~p~~S--------PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~   87 (281)
T d1k32a2          20 CDDLWEHDLKS-GSTR---KIVSNLGVINNARFF--------PDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS   87 (281)
T ss_dssp             TTEEEEEETTT-CCEE---EEECSSSEEEEEEEC--------TTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred             CCcEEEEECCC-CCEE---EEecCCCcccCEEEC--------CCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence            45677778887 6443   455567788999999        88998886532 22     3666666665543322111


Q ss_pred             -----cccceeeeEeeecCCeEEec
Q 048511           79 -----YRKEVISLASYIEGPVLVAG   98 (351)
Q Consensus        79 -----~~~~~~~~~~~~~~~~l~~~   98 (351)
                           .........|+|+|+.++..
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CCccCccccccccccCCCCCEEEEE
Confidence                 11234567799999988763

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.87  E-value=0.0021  Score=50.47  Aligned_cols=96  Identities=5%  Similarity=-0.030  Sum_probs=61.7

Q ss_pred             EEcCC--CCEEEEEeeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-C-----CcEEEEcCCC
Q 048511          182 HWSPD--GRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-D-----QTTRVFAPWK  253 (351)
Q Consensus       182 ~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-d-----g~i~vwd~~~  253 (351)
                      .++|+  |+.++-. .++.|.++|+.+++      ...+..+.+.+...+|||||+.||.... +     ..|.+++...
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGS------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCC------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCC------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            35688  8877655 45679999998864      3445556677888999999999875432 2     2477777766


Q ss_pred             ccccccCccceEEecccc----ccccceeEEEEeeeCCCcEEEEe
Q 048511          254 NVASLMGENSWHEVARPQ----VHGHDINCVTIIQGKGNHRFVSG  294 (351)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s~  294 (351)
                      +..        ..+....    .........+|+|  +++.|+..
T Consensus        78 g~~--------~~lt~~~~~~~~~~~~~~~~~~sp--dg~~l~~~  112 (281)
T d1k32a2          78 GEI--------KRITYFSGKSTGRRMFTDVAGFDP--DGNLIIST  112 (281)
T ss_dssp             TEE--------EECCCCCEEEETTEECSEEEEECT--TCCEEEEE
T ss_pred             Cce--------EEeeecCCCccCccccccccccCC--CCCEEEEE
Confidence            652        1221111    1112356778888  88877753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.77  E-value=0.0085  Score=49.41  Aligned_cols=97  Identities=9%  Similarity=0.026  Sum_probs=57.9

Q ss_pred             CCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcC--CCCEEEEEeeCC----------
Q 048511          130 SDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSP--DGRSILAHGYGG----------  197 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~dg----------  197 (351)
                      .||++     +++.-..+++|.+-|++.  .+..+.+.+    .....+..+...+  +-.|++..+.+.          
T Consensus        97 yDGry-----lFVNDkan~RVAvIdl~~--fkt~kIi~i----Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          97 YDGRF-----LFMNDKANTRVARVRCDV--MKCDAILEI----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEE-----EEEEETTTTEEEEEETTT--TEEEEEEEC----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             cceeE-----EEEEcCCCceEEEEECcc--eeeeEEEec----CCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence            35666     244445788999999998  555544442    2233455556544  445777665532          


Q ss_pred             --------eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC
Q 048511          198 --------AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD  243 (351)
Q Consensus       198 --------~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d  243 (351)
                              .+.++|..+.+.     ..+.. -......+.++++|+++++.+.+
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V-----~~QV~-V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEV-----AWQVL-VSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEE-----EEEEE-ESSCCCCEEECSSSSEEEEEESC
T ss_pred             cchhhcceEEEEEecCCceE-----EEEee-eCCChhccccCCCCCEEEEEecc
Confidence                    356677766532     22222 12345678999999998887653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.08  Score=40.97  Aligned_cols=233  Identities=9%  Similarity=-0.042  Sum_probs=127.7

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEe-eCCCcEEEEecCCCcccceeecccccce
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSS-SQDKVIRIWKLALRGSSANTQSTYRKEV   83 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~   83 (351)
                      ...|+-.++++ .+...+   ......+.+|+|.        ...+.|+-+ ..++.|.--++..........       
T Consensus         9 ~~~I~~~~l~~-~~~~~~---~~~~~~~~~id~d--------~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~-------   69 (266)
T d1ijqa1           9 RHEVRKMTLDR-SEYTSL---IPNLRNVVALDTE--------VASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------   69 (266)
T ss_dssp             BSSEEEEETTS-CCCEEE---ECSCSSEEEEEEE--------TTTTEEEEEETTTTEEEEEEC--------CE-------
T ss_pred             CCeEEEEECCC-Ccceee---eCCCCceEEEEEE--------eCCCEEEEEECCCCEEEEEEecCCCCCcceE-------
Confidence            34588888887 544333   2345567789998        555555544 345556555554321110000       


Q ss_pred             eeeEeeecCCeEEecCCceeEEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceE
Q 048511           84 ISLASYIEGPVLVAGSSSYQVSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWM  163 (351)
Q Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  163 (351)
                                              ..+......+..+++.+     ..+++      ..+-...+.|.+.++..  ....
T Consensus        70 ------------------------~~~~~~~~~p~glAvD~-----~~~~l------Y~~d~~~~~I~v~~~~g--~~~~  112 (266)
T d1ijqa1          70 ------------------------TVISRDIQAPDGLAVDW-----IHSNI------YWTDSVLGTVSVADTKG--VKRK  112 (266)
T ss_dssp             ------------------------EEECSSCSCCCEEEEET-----TTTEE------EEEETTTTEEEEEETTS--SSEE
T ss_pred             ------------------------EEEeCCCCCcceEEEee-----ccceE------EEEecCCCEEEeEecCC--ceEE
Confidence                                    01111223455677763     34455      66666778899999875  3322


Q ss_pred             EEEEeccccccccceEEEEEcCCCCEEEEEee--CCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-
Q 048511          164 NVVTVGELSHSALGFYGGHWSPDGRSILAHGY--GGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-  240 (351)
Q Consensus       164 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-  240 (351)
                      ....     ........++++|...+|+....  .+.|.-.++.....     .......-....++++.+.++.|.-+ 
T Consensus       113 ~~~~-----~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-----~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         113 TLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             EEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEc-----CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-----ecccccccceeeEEEeeccccEEEEec
Confidence            2222     23345788999997666665543  35676677765421     11122233457889999877766555 


Q ss_pred             eCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhcee
Q 048511          241 SHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTLN  314 (351)
Q Consensus       241 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~  314 (351)
                      ...+.|...++.....        ..+............+++..   +.++.+-..++.|...+.. +...+.+.
T Consensus       183 ~~~~~I~~~~~dG~~~--------~~~~~~~~~~~~p~~lav~~---~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         183 SKLHSISSIDVNGGNR--------KTILEDEKRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TTTTEEEEEETTSCSC--------EEEEECTTTTSSEEEEEEET---TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCcCEEEEEECCCCCE--------EEEEeCCCcccccEEEEEEC---CEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            5567888888865431        12221112222356777764   5666666677888777744 55444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.60  E-value=0.045  Score=44.77  Aligned_cols=153  Identities=12%  Similarity=0.185  Sum_probs=90.7

Q ss_pred             CCCcccCCCceeEEeecCC-----------eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeC-C
Q 048511          130 SDGVSCQQPSSILSASMDK-----------TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYG-G  197 (351)
Q Consensus       130 ~~~~~~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g  197 (351)
                      .++++      ++.|+.+.           .+.+||+.+  +.+........  .+.......++.+++++++.|+.+ .
T Consensus        29 ~~gkv------~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~--~~~~~~~~~~~~~~g~i~v~Gg~~~~   98 (387)
T d1k3ia3          29 TSGRV------LMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVT--KHDMFCPGISMDGNGQIVVTGGNDAK   98 (387)
T ss_dssp             TTTEE------EEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEEC--SCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred             eCCEE------EEEEeecCcccCCCCCceeEEEEEECCC--CcEeecCCCCC--CcccceeEEEEecCCcEEEeecCCCc
Confidence            57777      77776421           377999998  55543222111  122223456788999999988765 6


Q ss_pred             eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeCC------CcEEEEcCCCccccccCccceEEecccc
Q 048511          198 AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHD------QTTRVFAPWKNVASLMGENSWHEVARPQ  271 (351)
Q Consensus       198 ~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~  271 (351)
                      .+.+||..+..   +.....+.... .-..++..+||++++.++.+      ..+.+||..+..        |..+....
T Consensus        99 ~~~~yd~~~~~---w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~--------W~~~~~~~  166 (387)
T d1k3ia3          99 KTSLYDSSSDS---WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--------WTSLPNAK  166 (387)
T ss_dssp             CEEEEEGGGTE---EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--------EEEETTSC
T ss_pred             ceeEecCccCc---ccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCc--------eeecCCCc
Confidence            89999998764   23333332222 22356677899998888753      368999987764        44433211


Q ss_pred             cc-------cc----ceeE-EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          272 VH-------GH----DINC-VTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       272 ~~-------~~----~i~~-~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      ..       ..    .-.. +...+  ++..++.++.++.+.+++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         167 VNPMLTADKQGLYRSDNHAWLFGWK--KGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECG--GGCEEECCSSSEEEEEECST
T ss_pred             ccccccccccceeeccceeEEEEeC--CCCEEEecCcCCcEEecCcc
Confidence            00       00    0011 12223  57788888888887777755

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.51  E-value=0.16  Score=41.70  Aligned_cols=146  Identities=10%  Similarity=-0.015  Sum_probs=81.7

Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCC---------------eEEEEEcccCcc----
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGG---------------AFHLWRNVGVDI----  209 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---------------~i~~~d~~~~~~----  209 (351)
                      .+.++|..+  .+....+.+.      .....++++++|+++++.+.+.               .+.+++....+.    
T Consensus       174 ~~t~ID~~t--m~V~~QV~V~------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         174 VFTAVDADK--WEVAWQVLVS------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEEETTT--TEEEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEecCC--ceEEEEeeeC------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence            456778777  5554444432      2345689999999998876431               244444421100    


Q ss_pred             ---c--------------CcccccccccccccEEEEEeecCCCEEEEEe-CCCcEEEEcCCCccccccC--ccceEEecc
Q 048511          210 ---D--------------NWQPQKVPSGHFAAVMDISWSRSSDYLLSVS-HDQTTRVFAPWKNVASLMG--ENSWHEVAR  269 (351)
Q Consensus       210 ---~--------------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-~dg~i~vwd~~~~~~~~~~--~~~~~~~~~  269 (351)
                         .              ....++.+. -......+.++|||+++++++ .+.++.|+|++.-......  ...-.....
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence               0              000111111 122346789999999987665 4899999998643211000  000001112


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      .+ .+-....-+|..  .|....+---|..|.-|++.
T Consensus       325 ~e-lglgPLht~fd~--~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         325 PE-LGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CB-CCSCEEEEEECT--TSEEEEEETTTTEEEEEEHH
T ss_pred             cc-cCcCccccccCC--CceEEEEeeccceEEEEecc
Confidence            21 222345667877  77777777799999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.21  Score=38.40  Aligned_cols=209  Identities=10%  Similarity=0.016  Sum_probs=117.3

Q ss_pred             eeecCCceeEEEeeCCcccCCCCCccEEEE-eeCCCcEEEEecCCCcccceeecccccceeeeEeeecCCeEEecCCcee
Q 048511           25 LKGHTDWIRSLDFSLPVCTSGEAISILLVS-SSQDKVIRIWKLALRGSSANTQSTYRKEVISLASYIEGPVLVAGSSSYQ  103 (351)
Q Consensus        25 ~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (351)
                      +..+...+.+|+|.        ...+.|+- -..++.|...++........                             
T Consensus        31 ~~~~~~~~~~ld~D--------~~~~~iywsd~~~~~I~~~~l~g~~~~~v-----------------------------   73 (263)
T d1npea_          31 LHIPAKVIIGLAFD--------CVDKVVYWTDISEPSIGRASLHGGEPTTI-----------------------------   73 (263)
T ss_dssp             EEEEEEEEEEEEEE--------TTTTEEEEEETTTTEEEEEESSSCCCEEE-----------------------------
T ss_pred             cccCCCcEEEEEEE--------eCCCEEEEEECCCCeEEEEEcccCCcEEE-----------------------------
Confidence            33344567788888        44554444 34567777777764432111                             


Q ss_pred             EEEEEeccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEE
Q 048511          104 VSVESLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHW  183 (351)
Q Consensus       104 ~~~~~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  183 (351)
                            +......+.++++..     ..+++      .++-...+.|.+.++..  ... ..+..    ..-.....+++
T Consensus        74 ------~~~~~~~p~~iAvD~-----~~~~l------Y~~d~~~~~I~~~~~dg--~~~-~~l~~----~~l~~p~~l~v  129 (263)
T d1npea_          74 ------IRQDLGSPEGIALDH-----LGRTI------FWTDSQLDRIEVAKMDG--TQR-RVLFD----TGLVNPRGIVT  129 (263)
T ss_dssp             ------ECTTCCCEEEEEEET-----TTTEE------EEEETTTTEEEEEETTS--CSC-EEEEC----SSCSSEEEEEE
T ss_pred             ------EEeccccccEEEEec-----cCCeE------EEeccCCCEEEEEecCC--ceE-EEEec----ccccCCcEEEE
Confidence                  111223467788773     23444      55556677899999875  222 22221    22245789999


Q ss_pred             cCCCCEEEEEeeC-C--eEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEE-eCCCcEEEEcCCCcccccc
Q 048511          184 SPDGRSILAHGYG-G--AFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV-SHDQTTRVFAPWKNVASLM  259 (351)
Q Consensus       184 ~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~-~~dg~i~vwd~~~~~~~~~  259 (351)
                      +|...+++..... +  .|.--++....     ........-....++++.+.++.|.-+ ...+.|...++.....   
T Consensus       130 dp~~g~ly~t~~~~~~~~I~r~~~dG~~-----~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~---  201 (263)
T d1npea_         130 DPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---  201 (263)
T ss_dssp             ETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---
T ss_pred             ecccCcEEEeecCCCCcEEEEecCCCCC-----ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe---
Confidence            9987777655432 2  34444554432     111122223456889999877776544 4577898888865541   


Q ss_pred             CccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecC-chhhhce
Q 048511          260 GENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAP-LSFLKTL  313 (351)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~-~~~~~~~  313 (351)
                           +.+..  +... ...+++.   ++.+..+-...+.|...|.. ++.+..+
T Consensus       202 -----~~v~~--~~~~-P~~lav~---~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         202 -----RKVLE--GLQY-PFAVTSY---GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             -----EEEEE--CCCS-EEEEEEE---TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----EEEEC--CCCC-cEEEEEE---CCEEEEEECCCCEEEEEECCCCccceEE
Confidence                 12211  1112 3567775   36666676677888888865 5444433

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.24  Score=38.46  Aligned_cols=214  Identities=9%  Similarity=-0.014  Sum_probs=119.9

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecc----ccc
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQST----YRK   81 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~~   81 (351)
                      .+++|||+++ +  ..+..+.- ...|.-=.|.         +.+.|+-.. +..|.-|+++...........    ...
T Consensus        83 ~~LQiFnlet-K--~klks~~~-~e~VvfWkWi---------s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          83 KTLQIFNIEM-K--SKMKAHTM-TDDVTFWKWI---------SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             TEEEEEETTT-T--EEEEEEEC-SSCCCEEEES---------SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CeEEEEehhH-h--hhhceEEc-CCCcEEEEec---------CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCc
Confidence            4789999998 5  33333332 3467777776         344555554 457999999654333222211    145


Q ss_pred             ceeeeEeeecCCeEEecC-------CceeEEEE-------EeccccccceEEEEecCCCCCCCCCcccCCCceeEEeec-
Q 048511           82 EVISLASYIEGPVLVAGS-------SSYQVSVE-------SLLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASM-  146 (351)
Q Consensus        82 ~~~~~~~~~~~~~l~~~~-------~~~~~~~~-------~~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~-  146 (351)
                      .+.....+++.+.++..+       -.+.+++.       +.+.||...-..+.+.-+.   ....+      |+-+.. 
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~---~~~~l------f~fa~r~  219 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNA---EESTL------FCFAVRG  219 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCS---SCEEE------EEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCC---CCceE------EEEEECC
Confidence            566666777777666522       12333332       3467776655555544211   11222      444332 


Q ss_pred             --CCeEEEEeccCC-Ccce---EEEEEecc-ccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccc
Q 048511          147 --DKTMMIWQPEKT-TGIW---MNVVTVGE-LSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPS  219 (351)
Q Consensus       147 --d~~i~iwd~~~~-~~~~---~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  219 (351)
                        .+.++|-++... .+..   .+...+.. .........++..++....++.-+.-|.|++||++++     .++..-+
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg-----t~i~~nR  294 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----TCIYMNR  294 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----CEEEEEE
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc-----cEEEEee
Confidence              357888888662 1111   11122211 1223345567888888889999999999999999998     4455444


Q ss_pred             cccccEEEEEeecCCCEEEEEeCCCcEE
Q 048511          220 GHFAAVMDISWSRSSDYLLSVSHDQTTR  247 (351)
Q Consensus       220 ~~~~~v~~v~~sp~~~~l~s~~~dg~i~  247 (351)
                      -....|...+-..+..-++....+|.|.
T Consensus       295 Is~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         295 ISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCCCceEEeccCCCCceEEEECCCCeEE
Confidence            4455555444444433444445666553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.24  Score=38.03  Aligned_cols=166  Identities=9%  Similarity=-0.060  Sum_probs=95.4

Q ss_pred             ccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511          114 EDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAH  193 (351)
Q Consensus       114 ~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  193 (351)
                      ...+..++|.+     .++.+      +.+-..++.|+..++..  ... ..+..    .....+..++++.-+..|+.+
T Consensus        35 ~~~~~~ld~D~-----~~~~i------ywsd~~~~~I~~~~l~g--~~~-~~v~~----~~~~~p~~iAvD~~~~~lY~~   96 (263)
T d1npea_          35 AKVIIGLAFDC-----VDKVV------YWTDISEPSIGRASLHG--GEP-TTIIR----QDLGSPEGIALDHLGRTIFWT   96 (263)
T ss_dssp             EEEEEEEEEET-----TTTEE------EEEETTTTEEEEEESSS--CCC-EEEEC----TTCCCEEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEEEe-----CCCEE------EEEECCCCeEEEEEccc--CCc-EEEEE----eccccccEEEEeccCCeEEEe
Confidence            34577788884     33444      55555677888888875  222 22221    222457889998766666544


Q ss_pred             -eeCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEeC-CCcEEEE--cCCCccccccCccceEEecc
Q 048511          194 -GYGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSH-DQTTRVF--APWKNVASLMGENSWHEVAR  269 (351)
Q Consensus       194 -~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~-dg~i~vw--d~~~~~~~~~~~~~~~~~~~  269 (351)
                       ...+.|.+.++.....     ...+......+..+++.|...+|+-... .+..+|+  ++.....        ..+..
T Consensus        97 d~~~~~I~~~~~dg~~~-----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--------~~i~~  163 (263)
T d1npea_          97 DSQLDRIEVAKMDGTQR-----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------RILAQ  163 (263)
T ss_dssp             ETTTTEEEEEETTSCSC-----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--------EEEEC
T ss_pred             ccCCCEEEEEecCCceE-----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--------eeeee
Confidence             4568999999876531     1112222356789999997777654432 2233344  4433221        12211


Q ss_pred             ccccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhhhce
Q 048511          270 PQVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFLKTL  313 (351)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~  313 (351)
                        ..-.....+++.+ .++.+..+-...+.|...++.+...+.+
T Consensus       164 --~~~~~P~glaiD~-~~~~lYw~d~~~~~I~~~~~~g~~~~~v  204 (263)
T d1npea_         164 --DNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (263)
T ss_dssp             --TTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             --ecccccceEEEee-cCcEEEEEeCCCCEEEEEECCCCCeEEE
Confidence              1123467899987 2344445556778999999886655443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.36  Score=37.46  Aligned_cols=65  Identities=6%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             EEEEEeecCCCEEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCCCeEE
Q 048511          225 VMDISWSRSSDYLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADEKVAR  301 (351)
Q Consensus       225 v~~v~~sp~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~  301 (351)
                      ..++..++.-..+..-+.-|.|.+||+.++.          .+..-+.....|-..+-..  +..=+++...+|.|.
T Consensus       258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt----------~i~~nRIs~~~iF~~a~~~--~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         258 PVAMQISEKHDVVFLITKYGYIHLYDLETGT----------CIYMNRISGETIFVTAPHE--ATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEEET--TTTEEEEEETTSEEE
T ss_pred             EEEEEeeccCCEEEEEecCcEEEEEEccccc----------EEEEeecCCCceEEeccCC--CCceEEEECCCCeEE
Confidence            3456666666677777888999999998887          3433333344444333333  333344444666554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.25  E-value=0.55  Score=37.60  Aligned_cols=133  Identities=13%  Similarity=0.114  Sum_probs=80.0

Q ss_pred             ceEEEEE--cCC-CC-EEEEEeeCCeEEEEEcccCcc--cCcccccccccccccEEEEEeecCCCEEEEEeCCCcEEEEc
Q 048511          177 GFYGGHW--SPD-GR-SILAHGYGGAFHLWRNVGVDI--DNWQPQKVPSGHFAAVMDISWSRSSDYLLSVSHDQTTRVFA  250 (351)
Q Consensus       177 ~i~~i~~--~~~-~~-~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~~dg~i~vwd  250 (351)
                      .++.+|+  ++. +. ++++...+|.+..|.+.....  .....++.+. -...+..+.+.+....|+.+-++..|..++
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~  207 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFS  207 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEE
Confidence            4667777  664 44 566677789999998743221  1113344443 345788899999888999888887666665


Q ss_pred             CCCccccccCccceEEeccc--cccccceeEEEEeeeC--CCcEEEEecCCCeEEEEecCc--hhhhceee
Q 048511          251 PWKNVASLMGENSWHEVARP--QVHGHDINCVTIIQGK--GNHRFVSGADEKVARVFEAPL--SFLKTLNH  315 (351)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~v~vw~~~~--~~~~~~~~  315 (351)
                      ......     .....+...  ......+-.++.-...  +|.+|+|.-.+.+..|||...  ..+..|.-
T Consensus       208 a~~~~~-----~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i  273 (353)
T d1h6la_         208 AEPDGG-----SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI  273 (353)
T ss_dssp             SSTTSC-----SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             eccCCC-----ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence            542221     111122111  1234567888866521  345666666889999999763  45555553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.61  E-value=1.2  Score=38.34  Aligned_cols=23  Identities=4%  Similarity=0.059  Sum_probs=20.8

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .+.++++|+.||.++.||.++++
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCCEEEEECCCCeEEEEECCCCc
Confidence            56788889999999999999998

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.47  E-value=0.48  Score=40.86  Aligned_cols=23  Identities=4%  Similarity=0.102  Sum_probs=20.5

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .+.+++.|+.||.++-+|..+++
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCEEEEECCCCcEEEEECCCCc
Confidence            46678889999999999999998

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=1  Score=36.42  Aligned_cols=101  Identities=9%  Similarity=-0.058  Sum_probs=58.6

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee
Q 048511          116 WVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY  195 (351)
Q Consensus       116 ~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  195 (351)
                      .|..++|+      .+  .      |+. ..++.+..++...  -.......     ....++.++.++|.  .++....
T Consensus        88 ~v~~vafs------~d--~------l~v-~~~~~l~~~~~~~--l~~~~~~~-----~~~~~~~~~~~~p~--~~~l~~~  143 (381)
T d1xipa_          88 DVIFVCFH------GD--Q------VLV-STRNALYSLDLEE--LSEFRTVT-----SFEKPVFQLKNVNN--TLVILNS  143 (381)
T ss_dssp             TEEEEEEE------TT--E------EEE-EESSEEEEEESSS--TTCEEEEE-----ECSSCEEEEEECSS--EEEEEET
T ss_pred             CeEEEEee------CC--E------EEE-EeCCCEEEEEeec--cccccccc-----cccccccceecCCc--eeEEEec
Confidence            47788887      33  2      333 3456688888776  22222222     23345778887774  5667777


Q ss_pred             CCeEEEEEcccCcccCccc-ccccccccccEEEEEeecCCCEEEEEe
Q 048511          196 GGAFHLWRNVGVDIDNWQP-QKVPSGHFAAVMDISWSRSSDYLLSVS  241 (351)
Q Consensus       196 dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~s~~  241 (351)
                      ++.+.++++.......... +..+. -.+.+.+++|++.|..++++.
T Consensus       144 ~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         144 VNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             TSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEEEE
T ss_pred             CCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEEeC
Confidence            8999999987753210000 00111 124567778887777777664

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.88  Score=34.78  Aligned_cols=83  Identities=12%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCC---------CcEEEEecCCCcccceee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQD---------KVIRIWKLALRGSSANTQ   76 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~   76 (351)
                      ..|.+||+++ +++..+..+......- ++...         ++.+++.|+..         ..+.+||..+........
T Consensus        19 ~~~~~yd~~t-~~W~~~~~~p~~R~~~-~~~~~---------~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~   87 (288)
T d1zgka1          19 SYLEAYNPSN-GTWLRLADLQVPRSGL-AGCVV---------GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP   87 (288)
T ss_dssp             CCEEEEETTT-TEEEECCCCSSCCBSC-EEEEE---------TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             ceEEEEECCC-CeEEECCCCCCcccee-EEEEE---------CCEEEEEeCcccCCCCccccchhhhccccccccccccc
Confidence            3588999999 8887766554322222 22222         35566666531         346677776554432221


Q ss_pred             cccccceeeeEeeecCCeEEecCC
Q 048511           77 STYRKEVISLASYIEGPVLVAGSS  100 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~  100 (351)
                      ... ......+...+++.++.++.
T Consensus        88 ~p~-~r~~~~~~~~~~~i~~~gg~  110 (288)
T d1zgka1          88 MSV-PRNRIGVGVIDGHIYAVGGS  110 (288)
T ss_dssp             CSS-CCBTCEEEEETTEEEEECCE
T ss_pred             ccc-eecceeccccceeeEEecce
Confidence            111 11112223346666666543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.79  E-value=1.3  Score=35.43  Aligned_cols=146  Identities=9%  Similarity=0.082  Sum_probs=80.3

Q ss_pred             eEEeecCCeEEEEeccCCCcceEEEEEeccccccccceEEEE------EcCCCCEEEEEee-C---CeEEEEEcccCccc
Q 048511          141 ILSASMDKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGH------WSPDGRSILAHGY-G---GAFHLWRNVGVDID  210 (351)
Q Consensus       141 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~------~~~~~~~l~~~~~-d---g~i~~~d~~~~~~~  210 (351)
                      ++.....+-|++||+.   |+.+..+..       +.+..+.      +.....-+++++. +   .+|.+|.+..... 
T Consensus        43 I~gTdK~~Gl~vYdL~---G~~l~~~~~-------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~-  111 (353)
T d1h6la_          43 LITTNKKSGLAVYSLE---GKMLHSYHT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (353)
T ss_dssp             EEEEETTSCCEEEETT---CCEEEECCS-------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT-
T ss_pred             EEEEcCcCCEEEEcCC---CcEEEeccc-------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc-
Confidence            6666677779999996   555554432       2333333      2222233444442 2   3688888754321 


Q ss_pred             Cccccccccc-------ccccEEEEEe--ecC-CC-EEEEEeCCCcEEEEcCCCccccccCccceEEeccccccccceeE
Q 048511          211 NWQPQKVPSG-------HFAAVMDISW--SRS-SD-YLLSVSHDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINC  279 (351)
Q Consensus       211 ~~~~~~~~~~-------~~~~v~~v~~--sp~-~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (351)
                         .+..+..       ....+..+|+  ++. +. +++....+|.+..|.+......   ......+..+. -...+..
T Consensus       112 ---~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g---~v~~~lvr~f~-~~~q~EG  184 (353)
T d1h6la_         112 ---TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG---YISGKKVRAFK-MNSQTEG  184 (353)
T ss_dssp             ---EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS---SEEEEEEEEEE-CSSCEEE
T ss_pred             ---ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC---ceeeEeeeccC-CCCccce
Confidence               1111111       1124677777  554 44 4566677899988877432210   01223444443 2345888


Q ss_pred             EEEeeeCCCcEEEEecCCCeEEEEecC
Q 048511          280 VTIIQGKGNHRFVSGADEKVARVFEAP  306 (351)
Q Consensus       280 ~~~~~~~~~~~l~s~~~dg~v~vw~~~  306 (351)
                      |.+..  ....|..+-++.-|..++..
T Consensus       185 CVvDd--e~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         185 MAADD--EYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEET--TTTEEEEEETTTEEEEEESS
T ss_pred             EEEeC--CCCcEEEecCccceEEEEec
Confidence            88987  67788888777666555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=1.2  Score=33.97  Aligned_cols=165  Identities=9%  Similarity=-0.073  Sum_probs=88.9

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcc-eEEEEEeccccccccceEEEEEcCCCCEEEEE
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGI-WMNVVTVGELSHSALGFYGGHWSPDGRSILAH  193 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~  193 (351)
                      ..+..++|.+     ..+.+      +.+=...+.|.-.++...... ....+.    ......+..+++.+.+..|+.+
T Consensus        30 ~~~~~id~d~-----~~~~l------Yw~D~~~~~I~~~~l~~~~~~~~~~~~~----~~~~~~p~glAvD~~~~~lY~~   94 (266)
T d1ijqa1          30 RNVVALDTEV-----ASNRI------YWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWIHSNIYWT   94 (266)
T ss_dssp             SSEEEEEEET-----TTTEE------EEEETTTTEEEEEEC--------CEEEE----CSSCSCCCEEEEETTTTEEEEE
T ss_pred             CceEEEEEEe-----CCCEE------EEEECCCCEEEEEEecCCCCCcceEEEE----eCCCCCcceEEEeeccceEEEE
Confidence            3466788884     23333      444345566666555431111 111111    1222345678888766656555


Q ss_pred             e-eCCeEEEEEcccCcccCcccccccccccccEEEEEeecCCCEEEEEe--CCCcEEEEcCCCccccccCccceEEeccc
Q 048511          194 G-YGGAFHLWRNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSVS--HDQTTRVFAPWKNVASLMGENSWHEVARP  270 (351)
Q Consensus       194 ~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  270 (351)
                      . ..+.|.+.++....     ....+.........+++.|...+|+-..  ..+.|.-.++....        ...+.. 
T Consensus        95 d~~~~~I~v~~~~g~~-----~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~--------~~~l~~-  160 (266)
T d1ijqa1          95 DSVLGTVSVADTKGVK-----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVT-  160 (266)
T ss_dssp             ETTTTEEEEEETTSSS-----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--------EEEEEC-
T ss_pred             ecCCCEEEeEecCCce-----EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc--------eecccc-
Confidence            4 55789999998753     2222333345678899998665655433  33456666654432        112211 


Q ss_pred             cccccceeEEEEeeeCCCcEEEEecCCCeEEEEecCchhh
Q 048511          271 QVHGHDINCVTIIQGKGNHRFVSGADEKVARVFEAPLSFL  310 (351)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~  310 (351)
                       ..-...+.+++.+ .++.+..+-...+.|...++.|...
T Consensus       161 -~~~~~p~gl~iD~-~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         161 -ENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             -SSCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             -cccceeeEEEeec-cccEEEEecCCcCEEEEEECCCCCE
Confidence             1223467888887 2344555556778888888876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.52  E-value=2.9  Score=36.05  Aligned_cols=24  Identities=8%  Similarity=-0.042  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          232 RSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       232 p~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      -.+.+++.|+.||.++-+|.++++
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ecCCEEEEECCCCeEEEEECCCCc
Confidence            356788889999999999999998

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.39  E-value=2.9  Score=35.80  Aligned_cols=23  Identities=4%  Similarity=-0.007  Sum_probs=20.3

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCcc
Q 048511          233 SSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       233 ~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      .+.++++++.|+.++-+|.++++
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCCEEEEECCCCeEEEEECCCCc
Confidence            45678889999999999999998

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.28  E-value=1.5  Score=37.83  Aligned_cols=25  Identities=8%  Similarity=0.154  Sum_probs=21.8

Q ss_pred             ecCCCEEEEEeCCCcEEEEcCCCcc
Q 048511          231 SRSSDYLLSVSHDQTTRVFAPWKNV  255 (351)
Q Consensus       231 sp~~~~l~s~~~dg~i~vwd~~~~~  255 (351)
                      +..+.++++|+.||.++-+|.++++
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCC
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCc
Confidence            3456788889999999999999998

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.61  E-value=4.6  Score=31.82  Aligned_cols=146  Identities=13%  Similarity=0.041  Sum_probs=77.0

Q ss_pred             CCeEEEEeccCCCcceEEEEEec-c-ccccccceEEEEE--cCCCC-EEEEEe---eCCeEEEEEcccCcccCccccccc
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVG-E-LSHSALGFYGGHW--SPDGR-SILAHG---YGGAFHLWRNVGVDIDNWQPQKVP  218 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~i~~i~~--~~~~~-~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~  218 (351)
                      .|.|.++|+...+..... +... . ..........+.+  .++++ +|++..   ...+|.+|++..... ....+.++
T Consensus        67 ~G~i~~~dl~~~~~~~~~-l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~-~l~~~~~v  144 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTI  144 (340)
T ss_dssp             CCEEEEEETTSSSCCEEE-CEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEEE
T ss_pred             CCeEEEEecCCCCCcceE-EEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC-eEEEEeec
Confidence            488999999874333222 2211 1 1111112233333  45565 444443   356899999865431 01122222


Q ss_pred             cc-ccccEEEEEeecCCCEEEEEeC---C------------CcEEEEcCCCccccccCccceEEeccccccccceeEEEE
Q 048511          219 SG-HFAAVMDISWSRSSDYLLSVSH---D------------QTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTI  282 (351)
Q Consensus       219 ~~-~~~~v~~v~~sp~~~~l~s~~~---d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (351)
                      .. .....++|++..++.+++|-..   +            +...+|......        .+.+.   ......+.+++
T Consensus       145 ~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~--------~~~~~---~~l~~pNGI~~  213 (340)
T d1v04a_         145 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--------VRVVA---EGFDFANGINI  213 (340)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC--------EEEEE---EEESSEEEEEE
T ss_pred             CCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc--------eEEEc---CCCCccceeEE
Confidence            21 1235788999999988887321   1            123344333332        11111   11234788999


Q ss_pred             eeeCCCcEE-EEecCCCeEEEEecCc
Q 048511          283 IQGKGNHRF-VSGADEKVARVFEAPL  307 (351)
Q Consensus       283 ~~~~~~~~l-~s~~~dg~v~vw~~~~  307 (351)
                      +|  |+++| ++-...+.|++|++.+
T Consensus       214 s~--d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         214 SP--DGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             CT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred             CC--CCCEEEEEeCCCCeEEEEEeCC
Confidence            98  66554 6666788999999863

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.37  E-value=6.7  Score=32.25  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             cceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEecc---ccccccceEEEEEcCC---CC
Q 048511          115 DWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGE---LSHSALGFYGGHWSPD---GR  188 (351)
Q Consensus       115 ~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~~~~---~~  188 (351)
                      ...++|+|.      +++++      |++--..|.|++++...  +.......+..   ..........|+|+|+   ..
T Consensus        27 ~~P~~la~~------pdg~l------lVter~~G~i~~v~~~~--g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~   92 (450)
T d1crua_          27 NKPHALLWG------PDNQI------WLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (450)
T ss_dssp             SSEEEEEEC------TTSCE------EEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             CCceEEEEe------CCCeE------EEEEecCCEEEEEECCC--CcEeecccCCccccccCCCCceeeEEeCCCCccCC
Confidence            457799999      78887      77665579999998877  43332222211   1123456889999995   34


Q ss_pred             EEEEEee-------C----C--eEEEEEcccCcccCcc---ccc---ccccccccEEEEEeecCCCEEEEEeC
Q 048511          189 SILAHGY-------G----G--AFHLWRNVGVDIDNWQ---PQK---VPSGHFAAVMDISWSRSSDYLLSVSH  242 (351)
Q Consensus       189 ~l~~~~~-------d----g--~i~~~d~~~~~~~~~~---~~~---~~~~~~~~v~~v~~sp~~~~l~s~~~  242 (351)
                      +++....       +    .  .+..+...........   .+.   ....|  ....|.|.||+.++++.+.
T Consensus        93 ~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_          93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred             EEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccc--cccceeEcCCCCEEEEecC
Confidence            5544321       0    1  2333333322110000   000   11124  3568999999988776653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.85  E-value=7.7  Score=31.50  Aligned_cols=150  Identities=9%  Similarity=-0.014  Sum_probs=67.4

Q ss_pred             eEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEee---CCe--EEEEEcccCcccCc---cccccccc
Q 048511          149 TMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGY---GGA--FHLWRNVGVDIDNW---QPQKVPSG  220 (351)
Q Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~--i~~~d~~~~~~~~~---~~~~~~~~  220 (351)
                      .|..|.+.+....-...+.   .......+..+..++++++++....   +..  +.+.|+........   ........
T Consensus       209 ~v~~h~lgt~~~~d~~v~~---e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAE---FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             EEEEEETTSCGGGCEEEEC---CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             eEEEEECCCCccccccccc---cccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence            5777777663222222221   1122334667788999998875443   233  44445543221000   00111111


Q ss_pred             ccccEEEEEeecCCCEEEEEe---CCCcEEEEcCCCccccccCccceEEeccccccccceeEEEEeeeCCCcEEEEecCC
Q 048511          221 HFAAVMDISWSRSSDYLLSVS---HDQTTRVFAPWKNVASLMGENSWHEVARPQVHGHDINCVTIIQGKGNHRFVSGADE  297 (351)
Q Consensus       221 ~~~~v~~v~~sp~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  297 (351)
                      ......-+ -+.++.+++...   .++.|...++....     ...|+.+-.  .+...+..-.+.. .++.+++.--.+
T Consensus       286 ~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~-----~~~w~~vi~--~~~~~~~~~~~~~-~~~~lvl~~~~~  356 (430)
T d1qfma1         286 FEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPE-----ESKWKVLVP--EHEKDVLEWVACV-RSNFLVLCYLHD  356 (430)
T ss_dssp             SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCC-----GGGCEEEEC--CCSSCEEEEEEEE-TTTEEEEEEEET
T ss_pred             cccceEEE-ecCCceeecccCcccccceeEEecCCCCc-----cccceEEec--ccCcceeeeEEEE-ECCEEEEEEEcC
Confidence            12222222 223333444332   24667777776554     234555432  2233333333333 124444555566


Q ss_pred             C--eEEEEecCchhh
Q 048511          298 K--VARVFEAPLSFL  310 (351)
Q Consensus       298 g--~v~vw~~~~~~~  310 (351)
                      +  .|++++..++..
T Consensus       357 ~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         357 VKNTLQLHDLATGAL  371 (430)
T ss_dssp             TEEEEEEEETTTCCE
T ss_pred             CEeEEEEEECCCCcE
Confidence            5  477888874433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=84.89  E-value=1.8  Score=37.16  Aligned_cols=76  Identities=7%  Similarity=0.024  Sum_probs=50.5

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVIS   85 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   85 (351)
                      |.|.-||+.+ ++  .+...+... +...=..+        -.+.++++++.||.++.+|.++++.+.+..........-
T Consensus       457 G~l~AiD~~t-Gk--~~W~~~~~~-p~~gg~ls--------tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P  524 (573)
T d1kb0a2         457 GRLLAWDPVA-QK--AAWSVEHVS-PWNGGTLT--------TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP  524 (573)
T ss_dssp             EEEEEEETTT-TE--EEEEEEESS-SCCCCEEE--------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             ccEEEeCCCC-Cc--eEeeecCCC-CCCCceEE--------EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC
Confidence            5788899988 74  333433221 11111112        236788889999999999999999998887665444445


Q ss_pred             eEeeecCC
Q 048511           86 LASYIEGP   93 (351)
Q Consensus        86 ~~~~~~~~   93 (351)
                      +.|..+|+
T Consensus       525 ~ty~~~Gk  532 (573)
T d1kb0a2         525 STYMVDGR  532 (573)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCE
Confidence            66667776

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.16  E-value=2.1  Score=36.67  Aligned_cols=78  Identities=5%  Similarity=-0.018  Sum_probs=52.7

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      .|.|.-||+.+ ++..=...+..   ...+=...        -.+.+++.++.||.++.+|.++++.+............
T Consensus       437 ~G~l~A~D~~t-Gk~~W~~~~~~---~~~gg~l~--------TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~  504 (560)
T d1kv9a2         437 SGALLAWDPVK-QKAAWKVPYPT---HWNGGTLS--------TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAA  504 (560)
T ss_dssp             EEEEEEEETTT-TEEEEEEEESS---SCCCCEEE--------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccceEEEeCCC-CeEeeeccCCC---CCCCceeE--------ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcccc
Confidence            47888999998 75433222222   22211222        23668888999999999999999999888776655555


Q ss_pred             eeEeeecCCe
Q 048511           85 SLASYIEGPV   94 (351)
Q Consensus        85 ~~~~~~~~~~   94 (351)
                      -+.+..+|+.
T Consensus       505 P~ty~~dGkq  514 (560)
T d1kv9a2         505 PMTFELAGRQ  514 (560)
T ss_dssp             CEEEEETTEE
T ss_pred             CEEEEECCEE
Confidence            5667777763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.95  E-value=2.3  Score=36.64  Aligned_cols=78  Identities=12%  Similarity=0.013  Sum_probs=53.5

Q ss_pred             CceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeeccccccee
Q 048511            5 DNKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVI   84 (351)
Q Consensus         5 dg~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~   84 (351)
                      .|.|.-+|+.+ ++.  +.....+ .++..=..+        ..+.++++++.||.++.+|.++++.+............
T Consensus       465 ~G~l~AiD~~T-G~i--~W~~~~~-~p~~~g~ls--------tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~  532 (582)
T d1flga_         465 VGSLRAMDPVS-GKV--VWEHKEH-LPLWAGVLA--------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             SEEEEEECTTT-CCE--EEEEEES-SCCCSCCEE--------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCeEEEEcCCC-CcE--EeecCCC-CCCccceeE--------EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcccc
Confidence            47788888888 743  3333322 222211122        33668888999999999999999999888877665666


Q ss_pred             eeEeeecCCe
Q 048511           85 SLASYIEGPV   94 (351)
Q Consensus        85 ~~~~~~~~~~   94 (351)
                      -+.+..+|+.
T Consensus       533 P~ty~~~G~q  542 (582)
T d1flga_         533 PITWEQDGEQ  542 (582)
T ss_dssp             CEEEEETTEE
T ss_pred             CEEEEECCEE
Confidence            6777788863

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=10  Score=30.27  Aligned_cols=175  Identities=10%  Similarity=-0.012  Sum_probs=86.6

Q ss_pred             ceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCC---------cccceeecccccceeeeEeeecCCeEEecCCc
Q 048511           31 WIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALR---------GSSANTQSTYRKEVISLASYIEGPVLVAGSSS  101 (351)
Q Consensus        31 ~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (351)
                      ...-++.+        ....+++.|+.++ ++|-.+..-         ....... ..-..+..++++.+  .+++....
T Consensus        38 ~~~LLAVs--------n~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~-~~ip~v~~vafs~d--~l~v~~~~  105 (381)
T d1xipa_          38 SLQNLDIS--------NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPDVIFVCFHGD--QVLVSTRN  105 (381)
T ss_dssp             CCBCEEEE--------TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTTEEEEEEETT--EEEEEESS
T ss_pred             ccceEEEe--------CCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec-cCCCCeEEEEeeCC--EEEEEeCC
Confidence            45667777        5566888888775 566654211         0000011 11224667777644  33333222


Q ss_pred             eeEEEEE--------eccccccceEEEEecCCCCCCCCCcccCCCceeEEeecCCeEEEEeccCCCcceEEEEEeccccc
Q 048511          102 YQVSVES--------LLIGHEDWVYSVQWEPPSTAPSDGVSCQQPSSILSASMDKTMMIWQPEKTTGIWMNVVTVGELSH  173 (351)
Q Consensus       102 ~~~~~~~--------~~~~h~~~v~~l~~~p~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  173 (351)
                      . +....        ....-..++..+.++|      .  .      ++....++.+-++++..  +.......-.....
T Consensus       106 ~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~p------~--~------~~l~~~~~~~~~~~l~~--~~~~~~~~~v~~~~  168 (381)
T d1xipa_         106 A-LYSLDLEELSEFRTVTSFEKPVFQLKNVN------N--T------LVILNSVNDLSALDLRT--KSTKQLAQNVTSFD  168 (381)
T ss_dssp             E-EEEEESSSTTCEEEEEECSSCEEEEEECS------S--E------EEEEETTSEEEEEETTT--CCEEEEEESEEEEE
T ss_pred             C-EEEEEeeccccccccccccccccceecCC------c--e------eEEEecCCCEEEEEecc--CccccccCCcceEE
Confidence            1 11111        1111234577777774      2  3      66777789999999987  43222111000001


Q ss_pred             cccceEEEEEcCCCCEEEEEeeCCeEEEE-EcccCcccCcccccccccccccEEEEEeecCCCEEEEE
Q 048511          174 SALGFYGGHWSPDGRSILAHGYGGAFHLW-RNVGVDIDNWQPQKVPSGHFAAVMDISWSRSSDYLLSV  240 (351)
Q Consensus       174 ~~~~i~~i~~~~~~~~l~~~~~dg~i~~~-d~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  240 (351)
                      -...+.+++|++.+..++++..+ ...+. ++...     ..+.........|.+|.|-.+..++++-
T Consensus       169 ~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~-----~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         169 VTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLP-----SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCC-----HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCc-----cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            23457888888888888776332 22221 11111     0011111133467888888776666544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.33  E-value=13  Score=31.45  Aligned_cols=80  Identities=10%  Similarity=-0.085  Sum_probs=44.8

Q ss_pred             CCeEEEEeccCCCcceEEEEEeccccccccceEEEEEcCCCCEEEEEeeCCeEEEEEcccCcccCcccccccccc-cccE
Q 048511          147 DKTMMIWQPEKTTGIWMNVVTVGELSHSALGFYGGHWSPDGRSILAHGYGGAFHLWRNVGVDIDNWQPQKVPSGH-FAAV  225 (351)
Q Consensus       147 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~-~~~v  225 (351)
                      .|.|.-+|+.+  ++.+-+.....      ...+-.+.-.+.++++++.|+.++-+|.++++.     +-++.-. ...-
T Consensus       443 ~G~l~AiD~~T--G~~~W~~~~~~------~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~-----lW~~~l~~~~~a  509 (571)
T d2ad6a1         443 MGQIRAFDLTT--GKAKWTKWEKF------AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE-----LWNFKMPSGGIG  509 (571)
T ss_dssp             CEEEEEECTTT--CCEEEEEEESS------CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE-----EEEEECSSCCCS
T ss_pred             cccEEEeccCC--CceeeEcCCCC------CCCcceeEecCCEEEEECCCCeEEEEECCCCcE-----EEEEECCCCcee
Confidence            36788899988  54443333211      111111222466788899999999999999853     3332211 1111


Q ss_pred             EEEEeecCCCE-EEE
Q 048511          226 MDISWSRSSDY-LLS  239 (351)
Q Consensus       226 ~~v~~sp~~~~-l~s  239 (351)
                      .-+.|..+|++ +++
T Consensus       510 ~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         510 SPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CCEEEEETTEEEEEE
T ss_pred             cceEEEECCEEEEEE
Confidence            22566667764 444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.63  E-value=1.6  Score=37.73  Aligned_cols=77  Identities=9%  Similarity=0.006  Sum_probs=51.6

Q ss_pred             ceEEEEEccCCCceEEEEeeeecCCceeEEEeeCCcccCCCCCccEEEEeeCCCcEEEEecCCCcccceeecccccceee
Q 048511            6 NKIHLYRGQRTGKFVRACELKGHTDWIRSLDFSLPVCTSGEAISILLVSSSQDKVIRIWKLALRGSSANTQSTYRKEVIS   85 (351)
Q Consensus         6 g~i~vw~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~   85 (351)
                      |.|.-||+.+ ++..  .... +..++.+=..+        ..+.+++.|+.||.++.+|..+++.+.+..........-
T Consensus       453 G~l~A~D~~T-G~~~--W~~~-~~~~~~gg~ls--------TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P  520 (596)
T d1w6sa_         453 GQIKAYNAIT-GDYK--WEKM-ERFAVWGGTMA--------TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP  520 (596)
T ss_dssp             EEEEEECTTT-CCEE--EEEE-ESSCCCSBCEE--------ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             ceEEEEeCCC-Ccee--cccC-CCCCCccceeE--------ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC
Confidence            6788889888 6432  2221 12222221222        346688889999999999999999998887766555556


Q ss_pred             eEeeecCCe
Q 048511           86 LASYIEGPV   94 (351)
Q Consensus        86 ~~~~~~~~~   94 (351)
                      +.+..+|+.
T Consensus       521 ~tY~~dGkQ  529 (596)
T d1w6sa_         521 MTYTHKGTQ  529 (596)
T ss_dssp             EEEEETTEE
T ss_pred             eEEEECCEE
Confidence            667777763