Citrus Sinensis ID: 048530

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

LYSSTSVPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGSGDERVPGGFFPKGGDGQIARSHLHKA

cccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccccHHHHHHHHHccccccccccccccccccHHcccccccc

ccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcHEHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEcccccccccccHHHHHHHHEccccccccccccccccccHHHHHHHccc

lysstsvpgsdvdllefplnLEYLEAEFFLFGslgygldrvapnltlggpapigakkanldpftndVVLQFAWQEVGHLRAIKKTvkgfprplldlsagsFAKVIDkafgkplnppfdpyanSINYLIASYLVpyvgltgyvganpklqgAVSKRLVAGLLGVESGQDAVIRALLYEKanekvypygipvAVFTNKISQLRNTLghagikdeglvvpkalgaegkirgnvlagdensvaydrtpEEILRIVYgsgdervpggffpkggdgqiarSHLHKA

lysstsvpgsdvdLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGaegkirgnvlagdensvaydrtpEEILRIVYGSGDERVPGGffpkggdgqiarshlhka

***********VDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGSGDERV**GF*****************

********GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGSGDERVPGGFFPKGGDGQIARSHL***

*********SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGSGDERVPGGFFPKGGDGQIARSHLHKA

*YSSTSVPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEEILRIVYGSGDERVPGGFFPKGGDGQIARSHLHK*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		280	2.2.26 [Sep-21-2011]
P22242		313	Desiccation-related prote	N/A	no	0.964	0.862	0.640	8e-98

>sp\|P22242\|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1	Back alignment and function desciption

 Score =  357 bits (915), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 173/270 (64%), Positives = 206/270 (76%)

Query: 2   YSSTSVPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLD 61
           +    +P SDV LLEFPLNLE LEAEFF + + G G+D + P L  GGP+PIG +KANL 
Sbjct: 30  HEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLS 89

Query: 62  PFTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYA 121
           PF  D++ QFA+QE GH+RAI+ +V+GFPRPLLDLSA SFA V+D AFGK L PPFDPYA
Sbjct: 90  PFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYA 149

Query: 122 NSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANE 181
           N INYL+A Y+VPYVGLTGYVGANPKL+  VS++LVAGLL VE+GQDA+IRALLYE+A +
Sbjct: 150 NDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATD 209

Query: 182 KVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYD 241
           KV PYGI VA FTNKIS+LRN LG  G+KD GL+V   LGAEGKI GNVLAGD+NS+A+ 
Sbjct: 210 KVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFP 269

Query: 242 RTPEEILRIVYGSGDERVPGGFFPKGGDGQ 271
           RTPE  L     +     P  F PK   G+
Sbjct: 270 RTPERCLGSCTAAAMRPSPAAFIPKAPTGK 299

Craterostigma plantagineum (taxid: 4153)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		280
224099099		313	predicted protein [Populus trichocarpa]	0.978	0.875	0.766	1e-120
449462134		310	PREDICTED: desiccation-related protein P	0.960	0.867	0.773	1e-118
297852412		315	hypothetical protein ARALYDRAFT_891606 [	0.982	0.873	0.749	1e-117
21593191		315	dessication-related protein, putative [A	0.982	0.873	0.745	1e-117
18401988		315	uncharacterized protein [Arabidopsis tha	0.982	0.873	0.745	1e-116
255556470		311	conserved hypothetical protein [Ricinus	0.989	0.890	0.758	1e-116
12323093		302	dessication-related protein, putative; 7	0.982	0.910	0.745	1e-116
296083215		474	unnamed protein product [Vitis vinifera]	0.982	0.580	0.741	1e-113
359477103		303	PREDICTED: desiccation-related protein P	0.982	0.907	0.741	1e-113
356529093		313	PREDICTED: desiccation-related protein P	0.992	0.888	0.723	1e-112

>gi\|224099099\|ref\|XP_002311374.1\| predicted protein [Populus trichocarpa] gi\|222851194\|gb\|EEE88741.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/274 (76%), Positives = 238/274 (86%)

Query: 7   VPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTND 66
           +P SD+DLLEFPLNLEYLEAEFFL+GS+G GLD  APNLT+GGP P+GAKKANLDP+T D
Sbjct: 40  IPQSDIDLLEFPLNLEYLEAEFFLYGSMGQGLDNFAPNLTMGGPKPLGAKKANLDPYTRD 99

Query: 67  VVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINY 126
           V+ QFAWQEVGHLRAIK TV+GFPRPLLDLS  SFAK +D AFGK L+PPFDPYA+S++Y
Sbjct: 100 VIKQFAWQEVGHLRAIKDTVQGFPRPLLDLSTKSFAKTMDAAFGKRLSPPFDPYASSLHY 159

Query: 127 LIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEKVYPY 186
           LIASY++PYVGLTGYVGANPKLQ A SKRLVAGLL VESGQDAVIR LLYE A  +++PY
Sbjct: 160 LIASYVIPYVGLTGYVGANPKLQAAASKRLVAGLLAVESGQDAVIRGLLYEYALIRLHPY 219

Query: 187 GIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDRTPEE 246
           GI VA FTN+IS LRN LG  GIKDEGLVVPK  GAEG+IRGNVLAGDE S+ Y RTPEE
Sbjct: 220 GITVAEFTNRISDLRNKLGQEGIKDEGLVVPKKFGAEGQIRGNVLAGDEYSIGYARTPEE 279

Query: 247 ILRIVYGSGDERVPGGFFPKGGDGQIARSHLHKA 280
           ILR+VYGSG+E  PGGF+PKG DG+IA+SHL  +
Sbjct: 280 ILRVVYGSGNESTPGGFYPKGADGRIAKSHLQHS 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449462134\|ref\|XP_004148796.1\| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] gi\|449511873\|ref\|XP_004164077.1\| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297852412\|ref\|XP_002894087.1\| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] gi\|297339929\|gb\|EFH70346.1\| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|21593191\|gb\|AAM65140.1\| dessication-related protein, putative [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18401988\|ref\|NP_564518.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332194113\|gb\|AEE32234.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255556470\|ref\|XP_002519269.1\| conserved hypothetical protein [Ricinus communis] gi\|223541584\|gb\|EEF43133.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|12323093\|gb\|AAG51530.1\|AC051631_10 dessication-related protein, putative; 70055-71849 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|296083215\|emb\|CBI22851.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359477103\|ref\|XP_002273659.2\| PREDICTED: desiccation-related protein PCC13-62-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356529093\|ref\|XP_003533131.1\| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		280
TAIR\|locus:2202593		315	AT1G47980 "AT1G47980" [Arabido	0.982	0.873	0.745	2.1e-109
TAIR\|locus:2081645		317	AT3G62730 "AT3G62730" [Arabido	0.978	0.864	0.596	1.7e-82

TAIR\|locus:2202593 AT1G47980 "AT1G47980" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 205/275 (74%), Positives = 238/275 (86%)

Query:     3 SSTSVPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDP 62
             ++T+    D  LLEFPLNLEYLEAEFFLFG+LG GLD+VAPNLT+GGP+PIGA+KANLDP
Sbjct:    35 ATTNCTDQDRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDP 94

Query:    63 FTNDVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYAN 122
              T D++LQFAWQEVGHLRAIKKTVKGF RP LDLS  +FAKV+DKAFG    PPF+PYAN
Sbjct:    95 LTRDIILQFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYAN 154

Query:   123 SINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYEKANEK 182
             S NYLIASYLVPYVGLTGYVGANPKLQ   S++LVAGLLGVESGQDAVIR +LY +A   
Sbjct:   155 SYNYLIASYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHI 214

Query:   183 VYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGNVLAGDENSVAYDR 242
             VYPYG+ VA FT+KIS LRN LG AG+KDEGL+VPK +GAEG++ GNVL G+E S+++DR
Sbjct:   215 VYPYGVTVAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDR 274

Query:   243 TPEEILRIVYGSGDERVPGGFFPKGGDGQIARSHL 277
             TPEEILRIVYGSG+E VPGGF+PKG DG+IA+S+L
Sbjct:   275 TPEEILRIVYGSGNESVPGGFYPKGADGEIAKSYL 309

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2081645 AT3G62730 "AT3G62730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22242	DRPE_CRAPL	No assigned EC number	0.6407	0.9642	0.8626	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		280
pfam13668		137	pfam13668, Ferritin_2, Ferritin-like domain	4e-46

>gnl\|CDD\|222304 pfam13668, Ferritin_2, Ferritin-like domain	Back alignment and domain information

 Score =  151 bits (383), Expect = 4e-46
 Identities = 58/170 (34%), Positives = 79/170 (46%), Gaps = 35/170 (20%)

Query: 10  SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVL 69
           SDVD+L F L LEYLEA F+L    G+GLD                 KA LD     +  
Sbjct: 1   SDVDILNFALTLEYLEAAFYLQALAGFGLD--------------DFAKAGLDAAVRALAE 46

Query: 70  QFAWQEVGHLRAIKKTV--KGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYL 127
           + A  EV H+R +K  +     PRP  D                    PFDP+ + +++L
Sbjct: 47  EIADHEVAHVRFLKAALGGAPVPRPTFDF-------------------PFDPFTDRLSFL 87

Query: 128 IASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALLYE 177
             +Y++  VG++ Y+GA P L         A +LGVE+   AVIR LL E
Sbjct: 88  ALAYVLEDVGVSAYLGAAPLLSNKDYLAAAASILGVEARHAAVIRTLLGE 137

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		280
PF13668		137	Ferritin_2: Ferritin-like domain	100.0
cd01045		139	Ferritin_like_AB Uncharacterized family of ferriti	98.5
cd00657		130	Ferritin_like Ferritin-like superfamily of diiron-	98.44
PF02915		137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	97.76
cd01048		135	Ferritin_like_AB2 Uncharacterized family of ferrit	97.6
COG1633		176	Uncharacterized conserved protein [Function unknow	96.94
cd07908		154	Mn_catalase_like Manganese catalase-like protein,	96.77
PRK12775		1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.6
PRK13456		186	DNA protection protein DPS; Provisional	96.39
cd01044		125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	96.05
cd01052		148	DPSL DPS-like protein, ferritin-like diiron-bindin	95.06
cd00907		153	Bacterioferritin Bacterioferritin, ferritin-like d	94.99
PF13668		137	Ferritin_2: Ferritin-like domain	94.51
cd07908		154	Mn_catalase_like Manganese catalase-like protein,	93.93
cd01045		139	Ferritin_like_AB Uncharacterized family of ferriti	93.57
cd01051		156	Mn_catalase Manganese catalase, ferritin-like diir	93.52
PRK10635		158	bacterioferritin; Provisional	89.95
PF02915		137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	89.11
TIGR02284		139	conserved hypothetical protein. Members of this pr	88.68
cd01041		134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	88.6
cd00657		130	Ferritin_like Ferritin-like superfamily of diiron-	88.23
PRK12775		1006	putative trifunctional 2-polyprenylphenol hydroxyl	80.58
PF09968		162	DUF2202: Uncharacterized protein domain (DUF2202);	80.18

>PF13668 Ferritin_2: Ferritin-like domain	Back alignment and domain information

Probab=100.00  E-value=8.9e-34  Score=234.85  Aligned_cols=134  Identities=39%  Similarity=0.678  Sum_probs=125.4

Q ss_pred             CchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhh-c-
Q 048530           10 SDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTV-K-   87 (280)
Q Consensus        10 ~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aL-g-   87 (280)
                      +|++||||||+|||||.+||.+++.|.+.++ .              +..+++.+++++++|+.||..|+++|+++| | 
T Consensus         1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~   65 (137)
T PF13668_consen    1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N--------------KAALDPEVRDLFQEIADQEQGHVDFLQAALEGG   65 (137)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h--------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6999999999999999999999998887764 2              356789999999999999999999999999 6 


Q ss_pred             -CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhh
Q 048530           88 -GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESG  166 (280)
Q Consensus        88 -av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~  166 (280)
                       ++++|.||+                   +||||+|+.+||..|+.||++|+++|+|++++++|+++++++++|++||++
T Consensus        66 ~~~~~~~~~~-------------------~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~  126 (137)
T PF13668_consen   66 RPVPPPAYDF-------------------PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEAR  126 (137)
T ss_pred             CCCCCCcccc-------------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence             778888887                   489999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh
Q 048530          167 QDAVIRALLYE  177 (280)
Q Consensus       167 Haa~IR~lL~~  177 (280)
                      |++|||++|+|
T Consensus       127 H~~~ir~ll~~  137 (137)
T PF13668_consen  127 HAAWIRNLLGQ  137 (137)
T ss_pred             HHHHHHHHhcC
Confidence            99999999985

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria	Back alignment and domain information

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	Back alignment and domain information

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []	Back alignment and domain information

>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria	Back alignment and domain information

>COG1633 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain	Back alignment and domain information

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional	Back alignment and domain information

>PRK13456 DNA protection protein DPS; Provisional	Back alignment and domain information

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain	Back alignment and domain information

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain	Back alignment and domain information

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain	Back alignment and domain information

>PF13668 Ferritin_2: Ferritin-like domain	Back alignment and domain information

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain	Back alignment and domain information

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria	Back alignment and domain information

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain	Back alignment and domain information

>PRK10635 bacterioferritin; Provisional	Back alignment and domain information

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []	Back alignment and domain information

>TIGR02284 conserved hypothetical protein	Back alignment and domain information

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain	Back alignment and domain information

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	Back alignment and domain information

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional	Back alignment and domain information

>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		280
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 28/217 (12%), Positives = 58/217 (26%), Gaps = 65/217 (29%)

Query: 59  NLDPFTNDVVLQ---------FAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAF 109
             D F ++   +          + +E+ H+   K  V G  R L         +++ K  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFV 83

Query: 110 GKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDA 169
            + L   +    + I         P +    Y+    +L                     
Sbjct: 84  EEVLRINYKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYND------------------ 122

Query: 170 VIRALLYEKANEKVYPYGIPVAVFTNKISQLRNTLGHAGIKDEGLVVPKALGAEGKIRGN 229
                     N+    Y +          +LR  L    ++    V+   +   GK    
Sbjct: 123 ----------NQVFAKYNVSRL---QPYLKLRQAL--LELRPAKNVLIDGVLGSGK---T 164

Query: 230 VLAGD-----------EN-----SVAYDRTPEEILRI 250
            +A D           +      ++    +PE +L +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		280
2ib0_A		170	Conserved hypothetical alanine rich protein; 4-hel	98.39
2oh3_A		167	Rubrerythrin, COG1633: uncharacterized conserved p	97.94
2fzf_A		175	Hypothetical protein; structural genomics, southea	97.84
1vjx_A		157	Putative ferritin-like DIIRON-carboxylate protein;	97.75
2qqy_A		149	Sigma B operon; dodecameric alpha-helical, ferriti	96.78
3fse_A		365	Two-domain protein containing DJ-1/THIJ/PFPI-like	96.4
3gvy_A		161	Bacterioferritin; iron storage, DI-iron, ferroxida	95.98
3q4o_A		196	Uncharacterized protein MJ0754; ferritin-like prot	95.93
4etr_A		153	Putative uncharacterized protein; DUF2383, domain	95.82
1nfv_A		179	Bacterioferritin; 24 subunits in the active molecu	95.81
1jgc_A		161	Bacterioferritin, BFR; iron storage protein, metal	95.5
2fkz_A		155	Bacterioferritin; ferroxidase, DIIRON site, iron T	95.42
3r2k_A		154	Bacterioferritin, BFR; bacterial ferritin, iron bi	95.39
2y3q_A		158	Bacterioferritin; metal binding protein, redox; HE	95.13
3qb9_A		174	Bacterioferritin, BFR; cytosol, structural genomic	95.11
3uoi_A		161	Bacterioferritin, BFR; structural genomics, TB str	94.67
2oh3_A		167	Rubrerythrin, COG1633: uncharacterized conserved p	94.53
1j30_A		144	144AA long hypothetical rubrerythrin; sulerythrin,	93.92
3fvb_A		182	Bacterioferritin; niaid, ssgcid, decode, structura	93.73
4am5_A		159	Bacterioferritin; metal binding protein, ferroxida	93.57
1vjx_A		157	Putative ferritin-like DIIRON-carboxylate protein;	93.44
2vzb_A		170	Putative bacterioferritin-related protein; DPS, DP	91.59
2fzf_A		175	Hypothetical protein; structural genomics, southea	91.43
4di0_A		144	Rubrerythrin; ssgcid, seattle structural genomics	88.57
1lko_A		191	Rubrerythrin all-iron(II) form; reduced form, DIIR	87.17
2jd6_0		174	Ferritin homolog, ferritin; metal transport, iron,	82.84
1ji5_A		142	DLP-1; dodecamer, four-helix bundle, metal transpo	81.23
1krq_A		167	Ferritin; H-chain like four-helix bundle, binding	81.01
3oj5_A		189	Ferritin family protein; ferroxidase, cytosol, oxi	80.86
2v8t_A		302	Manganese-containing pseudocatalase; manganese cat	80.67
2qqy_A		149	Sigma B operon; dodecameric alpha-helical, ferriti	80.59
3pwf_A		170	Rubrerythrin; non heme iron peroxidases, oxidative	80.29
1n1q_A		149	DPS protein; four-helix bundle, unknown function;	80.15

>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9	Back alignment and structure

Probab=98.39  E-value=6.7e-07  Score=77.43  Aligned_cols=127  Identities=13%  Similarity=0.021  Sum_probs=105.0

Q ss_pred             CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 048530            9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-   87 (280)
Q Consensus         9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-   87 (280)
                      ..|+++||-||..||--  -|-+++     -                 .+.+++.+++.+.+...+...|...|+.+|. 
T Consensus        20 ~~d~~aL~~ALaaEhaA--IyaYGv-----~-----------------~a~l~~~~~~~a~~~~~~HrarRD~L~~~l~~   75 (170)
T 2ib0_A           20 SADNAALCDALAVEHAT--IYGYGI-----V-----------------SALSPPGVNFLVADALKQHRHRRDDVIVMLSA   75 (170)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHHH-----H-----------------HHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHH--HHHHHH-----H-----------------HhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999943  333343     2                 2356788999999999999999999999987 


Q ss_pred             --CC---CCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHH
Q 048530           88 --GF---PRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLG  162 (280)
Q Consensus        88 --av---~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~  162 (280)
                        +.   ++|.|+|                   ||. ..+..+-+..+..+|.=...+|.++.+...+++.++.|+++|+
T Consensus        76 ~G~~pp~a~aaY~l-------------------P~~-v~d~asa~~lAa~lE~~~A~ay~~~v~~a~~~~~R~~A~~aL~  135 (170)
T 2ib0_A           76 RGVTAPIAAAGYQL-------------------PMQ-VSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALT  135 (170)
T ss_dssp             TTCCCCCCCSSCCC-------------------SSC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCCCCCCcCcCCC-------------------CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence              22   2233433                   454 5889999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHhhh
Q 048530          163 VESGQDAVIRALLYEKA  179 (280)
Q Consensus       163 VEA~Haa~IR~lL~~~~  179 (280)
                      .+|.|+...|..+.+..
T Consensus       136 ~aAvr~a~wr~alG~~P  152 (170)
T 2ib0_A          136 ESAVMATRWNRVLGAWP  152 (170)
T ss_dssp             HHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999999876

PyMOL of 2ib0

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8	Back alignment and structure

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1	Back alignment and structure

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1	Back alignment and structure

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}	Back alignment and structure

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}	Back alignment and structure

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1	Back alignment and structure

>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A	Back alignment and structure

>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}	Back alignment and structure

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*	Back alignment and structure

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1	Back alignment and structure

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*	Back alignment and structure

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A	Back alignment and structure

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*	Back alignment and structure

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*	Back alignment and structure

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*	Back alignment and structure

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8	Back alignment and structure

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1	Back alignment and structure

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}	Back alignment and structure

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*	Back alignment and structure

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1	Back alignment and structure

>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}	Back alignment and structure

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1	Back alignment and structure

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}	Back alignment and structure

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A	Back alignment and structure

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0	Back alignment and structure

>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1	Back alignment and structure

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1	Back alignment and structure

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A	Back alignment and structure

>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A	Back alignment and structure

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}	Back alignment and structure

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A	Back alignment and structure

>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		280
d2ib0a1		142	a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {M	0.002

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142	Back information, alignment and structure


class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 20/170 (11%), Positives = 42/170 (24%), Gaps = 38/170 (22%)

Query: 6   SVPGSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTN 65
           S   +D   L   L +E+  A  +     GYG+                   A   P  N
Sbjct: 1   SEGSADNAALCDALAVEH--ATIY-----GYGIV-----------------SALSPPGVN 36

Query: 66  DVVLQFAWQEVGHLRAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSIN 125
            +V     Q       +   +               A+ +               +++ +
Sbjct: 37  FLVADALKQHRHRRDDVIVMLS--------------ARGVTAPIAAAGYQLPMQVSSAAD 82

Query: 126 YLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQDAVIRALL 175
               +  +   G T +       + A  +   +  L   +        +L
Sbjct: 83  AARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVL 132

PyMOL of d2ib0a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		280
d2ib0a1		142	Hypothetical protein Rv2844 {Mycobacterium tubercu	99.76
d2oh3a1		152	Uncharacterized protein AMB4284 homologue {Magneto	98.68
d2fzfa1		158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	98.65
d1vjxa_		149	Hypothetical protein TM1526 {Thermotoga maritima [	98.46
d2oh3a1		152	Uncharacterized protein AMB4284 homologue {Magneto	96.78
d1nf4a_		169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	96.35
d2fkza1		154	Bacterioferritin (cytochrome b1) {Azotobacter vine	96.28
d2htna1		158	Bacterioferritin (cytochrome b1) {Escherichia coli	95.63
d1jgca_		160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	95.45
d1lkoa1		146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	95.4
d1vjxa_		149	Hypothetical protein TM1526 {Thermotoga maritima [	94.85
d2ib0a1		142	Hypothetical protein Rv2844 {Mycobacterium tubercu	94.81
d2fzfa1		158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	93.61
d1yuza1		135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	91.71
d1j30a_		141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	84.3

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=1.2e-18  Score=142.14  Aligned_cols=132  Identities=14%  Similarity=0.012  Sum_probs=109.2

Q ss_pred             CCchhhhhhhHhHHHHHHHHHHhhhhCCCccccCCcccCCCCCCccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhhc-
Q 048530            9 GSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDRVAPNLTLGGPAPIGAKKANLDPFTNDVVLQFAWQEVGHLRAIKKTVK-   87 (280)
Q Consensus         9 ~~D~diLNFALnLEyLEa~FY~~a~~G~gl~~~~~~l~~gGp~p~g~~~a~l~~~v~~~~~eia~~E~~HV~~L~~aLg-   87 (280)
                      ..|.++||+||.+||  +.+|.+++..                      +.+++.+++++++++.||..|+.+|++.+. 
T Consensus         4 ~~d~~~L~~AL~~E~--aaiy~Y~~a~----------------------~~~~~~~~~~~~~~~~~e~~H~~~L~~~i~~   59 (142)
T d2ib0a1           4 SADNAALCDALAVEH--ATIYGYGIVS----------------------ALSPPGVNFLVADALKQHRHRRDDVIVMLSA   59 (142)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHHH----------------------HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH--HHHHHHHHHh----------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            369999999999999  5588886521                      234678999999999999999999998887 


Q ss_pred             CCCCccccCCcchHHHHHHHhcCCCCCCCCCCCCChHHHHHHHhhccchhHHhhccccccCCChhHHHHHHHHHHhhhhh
Q 048530           88 GFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINYLIASYLVPYVGLTGYVGANPKLQGAVSKRLVAGLLGVESGQ  167 (280)
Q Consensus        88 av~~P~id~s~~~F~~~~~~A~g~~l~p~FdPy~n~~~FL~~A~~~E~VGvtAY~Gaap~l~~~~~l~aAa~Il~VEA~H  167 (280)
                      ....|.....            ++.+   -++++|..++|..+..+|..++.+|.+++..++|+++++++++||++||+|
T Consensus        60 lgg~p~~~~~------------~~~~---~~~~td~~~~l~~a~~~E~~a~~~Y~~~~~~~~d~~~r~la~~il~~ea~h  124 (142)
T d2ib0a1          60 RGVTAPIAAA------------GYQL---PMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVM  124 (142)
T ss_dssp             TTCCCCCCCS------------SCCC---SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCcccc------------cccc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            2233332211            1111   246789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 048530          168 DAVIRALLYEKA  179 (280)
Q Consensus       168 aa~IR~lL~~~~  179 (280)
                      ++++|..+...+
T Consensus       125 a~~~r~~~~~~p  136 (142)
T d2ib0a1         125 ATRWNRVLGAWP  136 (142)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCC
Confidence            999999999865

PyMOL of d2ib0a1

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}	Back information, alignment and structure

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}	Back information, alignment and structure

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}	Back information, alignment and structure

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}	Back information, alignment and structure

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure