Citrus Sinensis ID: 048533
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 591 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKR3 | 596 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.981 | 0.610 | 0.0 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.830 | 0.808 | 0.294 | 5e-68 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.934 | 0.757 | 0.273 | 3e-67 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.844 | 0.673 | 0.298 | 9e-65 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.883 | 0.698 | 0.289 | 3e-62 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.905 | 0.853 | 0.275 | 2e-60 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.802 | 0.622 | 0.288 | 3e-60 | |
| Q9FLJ4 | 654 | Pentatricopeptide repeat- | no | no | 0.807 | 0.729 | 0.304 | 4e-60 | |
| Q8S8P6 | 624 | Pentatricopeptide repeat- | no | no | 0.873 | 0.826 | 0.298 | 5e-58 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.815 | 0.439 | 0.274 | 5e-58 |
| >sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/591 (61%), Positives = 456/591 (77%), Gaps = 6/591 (1%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVL---LNLYNCCHIP 57
M +L++ N + ++I A +LKG+W +L + S L +AI + L+L++ P
Sbjct: 1 MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGP 60
Query: 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117
SLS +FF W +S +P+ KHSLQS W MI ILTK+KHFK+A +L+K+A R+ LS+P VL
Sbjct: 61 SLSWSFFIWTDS-LPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119
Query: 118 ALVK-IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176
+LV + +DP+ SHV SWL+I+YA M D + VF+Q+R L PHL ACTVLLNSL
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLV 179
Query: 177 KDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236
K RLTD VWK++KKMV+LGVVANIH+YNVL+HAC KS D +K EKLL EME K V D+F
Sbjct: 180 KQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIF 239
Query: 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296
TYNTLI++YCKK MH+EAL+VQDRMER G++P+IVTYNS IHGF REGRMREA RLFR+I
Sbjct: 240 TYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI 299
Query: 297 KG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
K T NHVTYTTLIDGYCR ND++EALRLREVM ++G PGVVTYNSILRKLC++GRIR
Sbjct: 300 KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIR 359
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+ANRLL EM+ KKI PDN+TCNTLINAYCKI D SA+KVK +M+E+GL LD ++YKALI
Sbjct: 360 EANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALI 419
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475
HGFCK E++ AKE LF M++ GFSP Y +YSWLVDG+ N+N ++ + KLL+EF RGLC
Sbjct: 420 HGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLC 479
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
DV++YR LIRR CK E+VDYA+ LF M+ G++GDSVI+T++AYAYWR G+ S +
Sbjct: 480 ADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEM 586
D MY RRLM+ LK+Y+S SASYA DN++L FWSHV DR L+SK I +EM
Sbjct: 540 FDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREM 590
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/500 (29%), Positives = 265/500 (53%), Gaps = 9/500 (1%)
Query: 32 PNIASSLTSTAIHKV--LLNLYNCCHIPSLSC-AFFKWAESAVPNYKHSLQSHWTMIHIL 88
P+I L S ++H V L+N +N +P S AFFK+ S P ++ ++++++ + L
Sbjct: 71 PSIRKVLPSLSVHHVVDLIN-HNPLSLPQRSIFAFFKFISSQ-PGFRFTVETYFVLARFL 128
Query: 89 TKNKHFKSAQNMLEKIALRDFL-STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQ 147
++ F AQ+++E + R S SV +LV++ P ++ L+I Y +L
Sbjct: 129 AVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTP-MCGFLVDALMITYTDLGFIP 187
Query: 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207
D +Q F R H + C LL+ + K T +W Y +++ G N++++N+L+
Sbjct: 188 DAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILM 247
Query: 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS 267
+ CK ++ +K+ E+ + ++ + ++NTLI YCK G E ++ +ME+
Sbjct: 248 NKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTR 307
Query: 268 PDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALRL 325
PD+ TY++LI+ C+E +M A LF ++ +G PN V +TTLI G+ R +++
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367
Query: 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385
+ M +KG+ P +V YN+++ CK G + A +++ M + + PD +T TLI+ +C+
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427
Query: 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCS 445
GD +A++++ M + G+ LD+ + AL+ G CK + A+ L ML AG P +
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 446 YSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ 505
Y+ ++D +C K + + KLL E S G V Y L+ CK ++ A L + M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAML 547
Query: 506 GNGILGDSVIYTSLAYAYWR 525
G++ D + Y +L + R
Sbjct: 548 NIGVVPDDITYNTLLEGHHR 567
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/556 (27%), Positives = 268/556 (48%), Gaps = 4/556 (0%)
Query: 31 NPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK 90
N N+ + L V+ LY C + +L F PN+KH+ S MIHIL +
Sbjct: 66 NNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVR 125
Query: 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150
+ AQ+ L ++ R +S ++N+L + N V L+ Y + ++
Sbjct: 126 SGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAH 185
Query: 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210
+ F +R + AC L+ SL + ++ W VY+++ + GV N++ N++++A
Sbjct: 186 EAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNAL 245
Query: 211 CKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270
CK ++KV L +++ K V D+ TYNTLI+ Y KG+ EA + + M +G SP +
Sbjct: 246 CKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGV 305
Query: 271 VTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALRLREV 328
TYN++I+G C+ G+ A+ +F ++ G +P+ TY +L+ C+ D+ E ++
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365
Query: 329 MAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388
M ++ V P +V ++S++ + G + A N + E + PDNV LI YC+ G
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425
Query: 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448
+ AM ++N ML+ G +D TY ++HG CK K + A +L M + P + +
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485
Query: 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508
L+DG+C N + ++L + + + +DV Y L+ F K +D A+ ++ M
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 509 ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD-- 566
IL + Y+ L A G + D+M + + T+ I S Y + D
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 567 LFWSHVVDRGLMSKHI 582
F ++ G + I
Sbjct: 606 SFLEKMISEGFVPDCI 621
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 252/509 (49%), Gaps = 10/509 (1%)
Query: 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL----STPSVLNA 118
FF WA S +L+S +IH+ +K K AQ+++ R L S +
Sbjct: 107 FFDWARS---RRDSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDL 163
Query: 119 LVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD 178
LV + D + V + + ++ +VF++M + L+ + +C V L L+KD
Sbjct: 164 LVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKD 223
Query: 179 -RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237
T V+++ ++GV N+ YN++IH C+ + + LL ME K D+ +
Sbjct: 224 CYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVIS 283
Query: 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI- 296
Y+T++ YC+ G + + + M+R+G+ P+ Y S+I CR ++ EA F ++
Sbjct: 284 YSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI 343
Query: 297 -KGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
+G P+ V YTTLIDG+C+ D+ A + M ++ + P V+TY +I+ C+ G +
Sbjct: 344 RQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV 403
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+A +L +EM K + PD+VT LIN YCK G A +V N M++AG + TY LI
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475
G CK ++D A ELL M G P+ +Y+ +V+G C N E +KL+ EF + GL
Sbjct: 464 DGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN 523
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
D Y L+ +CK ++D AQ + M G G+ V + L + G + +
Sbjct: 524 ADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKL 583
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEI 564
L+ M + + + S Y N +
Sbjct: 584 LNWMLAKGIAPNATTFNSLVKQYCIRNNL 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 155/535 (28%), Positives = 267/535 (49%), Gaps = 13/535 (2%)
Query: 22 LKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSH 81
LK H +L +++++ T A +LL N +L F WA P+ +L+
Sbjct: 32 LKRHPYQL--HHLSANFTPEAASNLLLKSQN---DQALILKFLNWAN---PHQFFTLRCK 83
Query: 82 WTMIHILTKNKHFKSAQNMLEKIALR--DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF 139
+HILTK K +K+AQ + E +A + D V +L + +D S V +V
Sbjct: 84 CITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKS 143
Query: 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVA 198
Y+ L + L + + H MP + + +L++ + R V+K+M++ V
Sbjct: 144 YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSP 203
Query: 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQ 258
N+ YN+LI C + ++D L +ME K ++ TYNTLI YCK + +
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263
Query: 259 DRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRA 316
M +G+ P++++YN +I+G CREGRM+E + ++ +G + + VTY TLI GYC+
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323
Query: 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC 376
+ +AL + M G+ P V+TY S++ +CK G + A L++M + + P+ T
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436
TL++ + + G A +V M + G TY ALI+G C +M+ A +L M +
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 437 AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496
G SP SYS ++ G+C + + L++ E V +G+ D Y +LI+ FC++ +
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIY 551
A L+ M G+ D YT+L AY G+ + + ++M + ++ + Y
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 259/556 (46%), Gaps = 21/556 (3%)
Query: 33 NIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK 92
++A LT + + LL+L P+L+ F + + Y+ Q+ I +++K
Sbjct: 64 HVADKLTPSLVSTTLLSL---VKTPNLAFNFV----NHIDLYRLDFQTQCLAIAVISKLS 116
Query: 93 HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL-SWLVIFYANLKMTQDGLQ 151
K +L+++ S ++ + LV HD + S +L LV L+M + ++
Sbjct: 117 SPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIE 176
Query: 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211
F M+ P C +L L++ + W Y M ++ + +N++ +N++I+ C
Sbjct: 177 CFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLC 236
Query: 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271
K + K + L ME ++ + TYNTL+ + +G A + M+ +G PD+
Sbjct: 237 KEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQ 296
Query: 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA 331
TYN ++ C EGR E R ++I G P+ V+Y LI G DLE A R+ M
Sbjct: 297 TYNPILSWMCNEGRASEVLREMKEI-GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVK 355
Query: 332 KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTAS 391
+G+ P TYN+++ L E +I A L+ E+ EK I D+VT N LIN YC+ GD
Sbjct: 356 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKK 415
Query: 392 AMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVD 451
A + + M+ G+ QFTY +LI+ C+ + A EL ++ G P + L+D
Sbjct: 416 AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD 475
Query: 452 GYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG 511
G+C N + LL E + D Y L+R C + K + A+ L M+ GI
Sbjct: 476 GHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKP 535
Query: 512 DSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSH 571
D + Y +L Y + G+ K + D+M TL Y + +K+ E
Sbjct: 536 DHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQE-------- 587
Query: 572 VVDRGLMSKHIFKEMQ 587
G +++ + +EM+
Sbjct: 588 ----GELAEELLREMK 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/517 (28%), Positives = 251/517 (48%), Gaps = 43/517 (8%)
Query: 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKS 96
+L + +VL+ L P L+ FFKW+ + +KHS++S+ + HIL + +
Sbjct: 105 TLAPIWVPRVLVELK---EDPKLAFKFFKWSMTR-NGFKHSVESYCIVAHILFCARMYYD 160
Query: 97 AQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156
A ++L+++ L + V + L + V L +L M ++ +Q F +M
Sbjct: 161 ANSVLKEMVLSK--ADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKM 218
Query: 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216
+ + P +C N L+H K
Sbjct: 219 KRFRVFPKTRSC-----------------------------------NGLLHRFAKLGKT 243
Query: 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSL 276
D V++ +M R +FTYN +I CK+G A + + M+ G+ PD VTYNS+
Sbjct: 244 DDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSM 303
Query: 277 IHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGV 334
I GF + GR+ + F ++K P+ +TY LI+ +C+ L L M G+
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363
Query: 335 YPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMK 394
P VV+Y++++ CKEG ++ A + +M + P+ T +LI+A CKIG+ + A +
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFR 423
Query: 395 VKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC 454
+ N ML+ G+ + TY ALI G C A+ M A+EL M AG P+ SY+ L+ G+
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFV 483
Query: 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSV 514
N + L+LL+E RG+ D+ +Y I C EK++ A+ + N M+ GI +S+
Sbjct: 484 KAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSL 543
Query: 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIY 551
IYT+L AY+++G P +LD+M + +T+ +
Sbjct: 544 IYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 580
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 246/489 (50%), Gaps = 12/489 (2%)
Query: 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR-DFLSTPS-----VL 116
F+ + + + + LQS +IH+LT + A+ +++ + R S PS +
Sbjct: 60 LFETSSRSRVSKSNDLQSFSAVIHVLTGAHKYTLARCLIKSLIERLKRHSEPSNMSHRLF 119
Query: 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176
NAL I P + V S L++ + + + ++ L V +M+ P AC +LN L
Sbjct: 120 NALEDIQS-PKFSIGVFSLLIMEFLEMGLFEEALWVSREMKCS---PDSKACLSILNGLV 175
Query: 177 KDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236
+ R D VW Y+ M+ G+V ++H+Y VL C K K EKLL EM ++ +++
Sbjct: 176 RRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVY 235
Query: 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296
Y I C+ EA + + M++ G+ P++ TY+++I G+C+ G +R+A L+++I
Sbjct: 236 IYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEI 295
Query: 297 KGAT--PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRI 354
A PN V + TL+DG+C+A +L A L M GV P + YN ++ CK G +
Sbjct: 296 LVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNM 355
Query: 355 RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKAL 414
+A LL+EM ++PD T LIN C A A ++ +M + TY +L
Sbjct: 356 LEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSL 415
Query: 415 IHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGL 474
IHG+CK M+ A +L M +G P+ ++S L+DGYCN + +A + L E +G+
Sbjct: 416 IHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475
Query: 475 CVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534
DV Y ALI K+ + A RL++ M GI + + L +W+ G D
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535
Query: 535 ILDDMYRRR 543
+ ++R
Sbjct: 536 FYQENNQQR 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 158/530 (29%), Positives = 263/530 (49%), Gaps = 14/530 (2%)
Query: 3 SLVALNSDTKFIKTISAIML-KGHWAKLL-NPNIASSLTSTAIHKVLLNLYNCCHIPSLS 60
S V L+SD + + I+A ++ K KL NP++ +L S VL +P+ S
Sbjct: 23 SPVLLSSDQEAARRITACLVEKSTIGKLQSNPSLLFNLNSNVTRLVLSE----PTLPTQS 78
Query: 61 CA-FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP--SVLN 117
C FFK N K L + T+ H L N+ F +++L + F P + +
Sbjct: 79 CIDFFKLLREFESNLKPDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGS 138
Query: 118 ALVK--IHDDPDGNSHVLSWLVI-FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS 174
A+V I ++ LV Y + M ++GL+VFD M L +C V L +
Sbjct: 139 AMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVA 198
Query: 175 LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234
K R D+ +++++MV GV ++ +++ C+ +V+K +KL+ E K ++ +
Sbjct: 199 AKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPE 258
Query: 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294
+TYNT+I Y K+ V M+++G+ + VTY L+ + G+M +A +LF
Sbjct: 259 AYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFD 318
Query: 295 DIK--GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG 352
+++ G + YT+LI CR +++ A L + + KG+ P TY +++ +CK G
Sbjct: 319 EMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVG 378
Query: 353 RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYK 412
+ A L+NEM K + V NTLI+ YC+ G A + + M + G D FT
Sbjct: 379 EMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCN 438
Query: 413 ALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472
+ F + K D AK+ LF M++ G S SY+ L+D YC + N E +L E S+
Sbjct: 439 TIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK 498
Query: 473 GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522
G+ + Y +I +CK+ K+ A++L M+ NG+ DS YTSL +
Sbjct: 499 GVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHG 548
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 236/521 (45%), Gaps = 39/521 (7%)
Query: 59 LSCAFFKWA-ESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117
L+ F KW + H +Q HIL + + + A+++L++++L S+ V
Sbjct: 52 LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSS-FVFG 110
Query: 118 ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK 177
AL+ + + N V L+ Y M QD L++F M ++ P ++ C +L S+ K
Sbjct: 111 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 170
Query: 178 DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237
VW K+M++ + ++ +N+LI+ C +K L+ +ME + T
Sbjct: 171 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 230
Query: 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297
YNT++ YCKKG A+ + D M+ +G+ D+ TYN LIH CR R+ + L RD++
Sbjct: 231 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 290
Query: 298 -------------------------------------GATPNHVTYTTLIDGYCRANDLE 320
G +PNHVT+ LIDG+ + +
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFK 350
Query: 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI 380
EAL++ +M AKG+ P V+Y +L LCK A M + +T +I
Sbjct: 351 EALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410
Query: 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFS 440
+ CK G A+ + N M + G+ D TY ALI+GFCK AKE++ + G S
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Query: 441 PSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500
P+ YS L+ C + +++ + + G D + L+ CK KV A+
Sbjct: 471 PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEF 530
Query: 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541
M +GIL ++V + L Y +GE + D+M +
Sbjct: 531 MRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTK 571
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 591 | ||||||
| 255584314 | 625 | pentatricopeptide repeat-containing prot | 0.969 | 0.916 | 0.743 | 0.0 | |
| 224127568 | 593 | predicted protein [Populus trichocarpa] | 0.993 | 0.989 | 0.716 | 0.0 | |
| 225451899 | 590 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.986 | 0.707 | 0.0 | |
| 147841262 | 590 | hypothetical protein VITISV_022293 [Viti | 0.984 | 0.986 | 0.706 | 0.0 | |
| 449445409 | 578 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.993 | 0.660 | 0.0 | |
| 356555026 | 587 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.996 | 0.645 | 0.0 | |
| 357515141 | 731 | Pentatricopeptide repeat-containing prot | 0.991 | 0.801 | 0.641 | 0.0 | |
| 15240991 | 596 | pentatricopeptide repeat-containing prot | 0.989 | 0.981 | 0.610 | 0.0 | |
| 297805886 | 582 | pentatricopeptide repeat-containing prot | 0.967 | 0.982 | 0.610 | 0.0 | |
| 298204410 | 653 | unnamed protein product [Vitis vinifera] | 0.925 | 0.837 | 0.555 | 0.0 |
| >gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/573 (74%), Positives = 490/573 (85%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLS 60
MA++V L S+T+ ++ I A ++KG W LL P I S LT++ +H+VL L P LS
Sbjct: 1 MAAVVTLRSETQLVQNICATVIKGGWNNLLRPKICSILTASTLHQVLYQLSLHSQGPCLS 60
Query: 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120
A FKW ES++PNYKHSLQS WTMIHILTK KH K+AQ++LEKIA RDFLST SVL+ALV
Sbjct: 61 WALFKWIESSIPNYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLSTQSVLSALV 120
Query: 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL 180
++HDDPD NSHV SWLVI YAN KM Q+ +QVF+ M V+ PHLHACTVLLNSLAKDRL
Sbjct: 121 RLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRL 180
Query: 181 TDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240
TDMVWKVYKKM ++GV ANIH+YNVLIHACCKS DV+K + LL EME K V DLFTYNT
Sbjct: 181 TDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNT 240
Query: 241 LIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT 300
LI+LYCKKGMHYEAL+VQDRMEREGI PDIVTYNSLIHGFC+EGRMREA RLF++I+ AT
Sbjct: 241 LISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT 300
Query: 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360
PNHVTYTTLIDGYCR NDL++ALRLRE M A+G+YP VVTYNSILRKLC+ GRIRDAN+L
Sbjct: 301 PNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKL 360
Query: 361 LNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420
LNEM+EKKI PDNVTCNTLINAYCKIGD SA+KVKNRM+EAGL LDQFTYKALIHGFCK
Sbjct: 361 LNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCK 420
Query: 421 AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSV 480
+EMD AKELL MLDAGFSPSYC+YSWLVDGYCN+ NEEA+LKL DEFV +GLCVD S+
Sbjct: 421 IREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSL 480
Query: 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540
YRALIRRFCK+E+VDYA+++F+LMQ G LGDSVIYTSLAYAYW+ G+ A SD+LD+MY
Sbjct: 481 YRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEMY 540
Query: 541 RRRLMITLKIYRSFSASYAKDNEILDLFWSHVV 573
+RRLMITLKIYR+ +ASYA DN IL LFW+HVV
Sbjct: 541 KRRLMITLKIYRALNASYAGDNSILSLFWNHVV 573
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa] gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/593 (71%), Positives = 498/593 (83%), Gaps = 6/593 (1%)
Query: 1 MASLVALNSDTKF-IKTISAIMLKGHWAKLLNPNIASS----LTSTA-IHKVLLNLYNCC 54
MA+L ++++T+ I++I A ++KG W LL P S+ +T+TA + +VLL+L
Sbjct: 1 MATLTPISNETQLLIQSICASVIKGSWKNLLRPKFGSNDYHLITTTATVRQVLLHLSLYD 60
Query: 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPS 114
P LS A FKW ES+VPNYKHSLQS WTM++ILTK+KHFK+A LE IA +DFLST S
Sbjct: 61 QSPCLSWALFKWIESSVPNYKHSLQSSWTMLYILTKHKHFKTAHAFLENIAFKDFLSTQS 120
Query: 115 VLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS 174
VL++LVKIHDDPD NSHVLSWLVI Y N KMT + +QVF+ MRV+ PHLHACTVLLNS
Sbjct: 121 VLSSLVKIHDDPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNS 180
Query: 175 LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234
LAKDRLTD VWK+YKKMV+LGVVANIH+YNVL+HACCKS DV+K EK+L EME K V D
Sbjct: 181 LAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPD 240
Query: 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294
LFTYNTLI+LYCKKGMHYEAL+VQDRME GISPDI TYNSLI+GFCREGRMREA +LFR
Sbjct: 241 LFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFR 300
Query: 295 DIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRI 354
DIK TPNHVTYT+LIDGYCR NDL+EALRL+EVM+ KG+YP V+TYNSILRKLC+ GR+
Sbjct: 301 DIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRL 360
Query: 355 RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKAL 414
RDAN LLNEM+E+KI PDNVTCNTLINAYCKIGD SA+KVK++M+ AGL LDQFTYKAL
Sbjct: 361 RDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKAL 420
Query: 415 IHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGL 474
IHGFCKAKE+D AKELLFGM+DAGFSPSYC+YSWLVD YC + NEEA++KL DE V RGL
Sbjct: 421 IHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGL 480
Query: 475 CVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534
CVDVSVYRALIRRFCK EK+D AQR+ LM+ GI GDSV+YTSLAY YW+ G+ SD
Sbjct: 481 CVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSD 540
Query: 535 ILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
ILD+MY++RLMITLKIYRSF+ASYA DN IL LFW+HV++R LMSK+I K+MQ
Sbjct: 541 ILDEMYKKRLMITLKIYRSFNASYASDNSILSLFWNHVLERRLMSKNILKDMQ 593
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/589 (70%), Positives = 497/589 (84%), Gaps = 7/589 (1%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLY--NCCHIPS 58
MASLV +T+ K + I++KGHW LL PN+ S+LTST +++VLLNL CC
Sbjct: 1 MASLVFQCGETQLAKIVCGIVVKGHWNSLLKPNVGSNLTSTILNQVLLNLSLDGCC---- 56
Query: 59 LSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA 118
+S AFFKW ES + N+KHSLQS WTMIH L K+K FK+AQN+LE+IA+RD+LS+PSVLNA
Sbjct: 57 VSWAFFKWVESNL-NHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNA 115
Query: 119 LVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD 178
+V+IHDDPD NS +LSWLVIFYAN +MTQD +QVF+ MRVH PHLHACTVLLNSLAK
Sbjct: 116 VVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKA 175
Query: 179 RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTY 238
RLT+MVWKVYKKMV++GVV NIH++NVLIHACCKS DV+K E+LL EME + + DLFTY
Sbjct: 176 RLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTY 235
Query: 239 NTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298
NTLI+LYCKKGMHYEAL +QDRMER G+SPDIVTYNSLI+GFCREGRMREA RLFR+I G
Sbjct: 236 NTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREING 295
Query: 299 ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDAN 358
ATPNHVTYTTLIDGYCR NDLEEALRLREVM +G++PGVVTYNSILRKLC+EG+I+DAN
Sbjct: 296 ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDAN 355
Query: 359 RLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGF 418
RLLNEM+E+K+ PDNVTCNTLINAYCKIGD SAMKVK +MLEAGL DQFT+KALIHGF
Sbjct: 356 RLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGF 415
Query: 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478
CK E+D AKE LF MLDAGFSPSY +YSWLVD Y +++N+EA+++L DE +GL VD+
Sbjct: 416 CKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDI 475
Query: 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDD 538
SVYRALIRR CK +K++ A+R+F LMQG G+ GDSV+YTSLAYAY++AG+ A SD+LD+
Sbjct: 476 SVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDE 535
Query: 539 MYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
M +RRLMITLKIYR FSASYA D IL LFW HV++R L+SK+I K +Q
Sbjct: 536 MDKRRLMITLKIYRCFSASYAGDGSILGLFWDHVIERRLISKNILKYIQ 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/589 (70%), Positives = 496/589 (84%), Gaps = 7/589 (1%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLY--NCCHIPS 58
MASLV +T+ K + I++KGHW LL PN+ S+LTST +++VLLNL CC
Sbjct: 1 MASLVFQCGETQLAKIVCGIVVKGHWNSLLKPNVGSNLTSTILNQVLLNLSLDGCC---- 56
Query: 59 LSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA 118
+S AFFKW ES + N+ HSLQS WTMIH L K+K FK+AQN+LE+IA+RD+LS+PSVLNA
Sbjct: 57 VSWAFFKWVESNL-NHXHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNA 115
Query: 119 LVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD 178
+V+IHDDPD NS +LSWLVIFYAN +MTQD +QVF+ MRVH PHLHACTVLLNSLAK
Sbjct: 116 VVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKA 175
Query: 179 RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTY 238
RLT+MVWKVYKKMV++GVV NIH++NVLIHACCKS DV+K E+LL EME + + DLFTY
Sbjct: 176 RLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTY 235
Query: 239 NTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298
NTLI+LYCKKGMHYEAL +QDRMER G+SPDIVTYNSLI+GFCREGRMREA RLFR+I G
Sbjct: 236 NTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREING 295
Query: 299 ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDAN 358
ATPNHVTYTTLIDGYCR NDLEEALRLREVM +G++PGVVTYNSILRKLC+EG+I+DAN
Sbjct: 296 ATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDAN 355
Query: 359 RLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGF 418
RLLNEM+E+K+ PDNVTCNTLINAYCKIGD SAMKVK +MLEAGL DQFT+KALIHGF
Sbjct: 356 RLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGF 415
Query: 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478
CK E+D AKE LF MLDAGFSPSY +YSWLVD Y +++N+EA+++L DE +GL VD+
Sbjct: 416 CKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDI 475
Query: 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDD 538
SVYRALIRR CK +K++ A+R+F LMQG G+ GDSV+YTSLAYAY++AG+ A SD+LD+
Sbjct: 476 SVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDE 535
Query: 539 MYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
M +RRLMITLKIYR FSASYA D IL LFW HV++R L+SK+I K +Q
Sbjct: 536 MDKRRLMITLKIYRCFSASYAGDGSILGLFWDHVIERRLISKNILKYIQ 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Cucumis sativus] gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/575 (66%), Positives = 470/575 (81%), Gaps = 1/575 (0%)
Query: 13 FIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVP 72
++++ A+++KGHW LL P I+SSLTS +IH++LL L C PSLS AFFKW E +P
Sbjct: 4 LVQSMFAVVVKGHWNHLLKPKISSSLTSKSIHQILLRLSFYCSGPSLSWAFFKWVE-LIP 62
Query: 73 NYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132
+YKHSLQS W MI ILT++KHFK+AQ +LEKIA +DF+S+P VLNALV +D+PD N+H+
Sbjct: 63 DYKHSLQSSWAMIFILTEHKHFKTAQGLLEKIAHKDFISSPLVLNALVTSYDNPDVNAHI 122
Query: 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192
LSWL+I Y N KM QD +QV + MR+H P+LHACTVLLNSLAKDRLTD VWK YKKM+
Sbjct: 123 LSWLMIIYVNCKMPQDAIQVLEYMRLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMI 182
Query: 193 QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHY 252
++GVV NIH+YNVLIHACCKS DV+K E+L+CEME K V DL+TYNTLI+LY +K +HY
Sbjct: 183 RVGVVPNIHIYNVLIHACCKSGDVEKAEQLVCEMELKSVFPDLYTYNTLISLYSRKSLHY 242
Query: 253 EALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDG 312
EAL VQDRMER G+SPDIVTYNSLI+GFC+EG+MREA +LFR+IK +PNHVTYTTLIDG
Sbjct: 243 EALCVQDRMERAGVSPDIVTYNSLIYGFCKEGKMREAVKLFREIKDVSPNHVTYTTLIDG 302
Query: 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372
YCR ND EEALRL +VM AKG++ GV TYNS+LRKLC+EGRIRDAN+LLNEM E+K+ PD
Sbjct: 303 YCRVNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPD 362
Query: 373 NVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLF 432
NVTCNTLINAYCKIGD SA+KVK++ML+AGL LD FTYKALIHGFC ++M+ AKELLF
Sbjct: 363 NVTCNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKELLF 422
Query: 433 GMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE 492
MLD G SP YC+YSWLVDGYC NE A++ LLDEF+++G CVD+SV RALIRR C +E
Sbjct: 423 CMLDVGLSPGYCTYSWLVDGYCELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQE 482
Query: 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYR 552
+V +A+++++ M G+ GDSVIYTSLAYAYW+ G+ S++L +M +R L+I LK+YR
Sbjct: 483 RVGFAEKIYSTMHLRGVSGDSVIYTSLAYAYWKDGKSNLVSEMLSEMTKRSLLINLKLYR 542
Query: 553 SFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
F+ASY N IL LFW HV +RGL+SK I KE+Q
Sbjct: 543 CFNASYGPHNSILHLFWDHVAERGLLSKSITKEIQ 577
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/586 (64%), Positives = 480/586 (81%), Gaps = 1/586 (0%)
Query: 4 LVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAF 63
+V + S +F+ ++ +I++KGHW LL AS+LTS+ IHKVLL L + S S F
Sbjct: 1 MVLIGSHNQFVDSVCSIVVKGHWGNLLKVKNASALTSSTIHKVLLQLSLYGYGLSHSFPF 60
Query: 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123
FKW +S +P+Y HSLQ W MIHILT++KHFK+AQ++LEKIA +DFLS+PSVL+ LV+ H
Sbjct: 61 FKWLDS-IPHYSHSLQCSWAMIHILTEHKHFKTAQHVLEKIAHKDFLSSPSVLSTLVRTH 119
Query: 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM 183
D+ + NS VLSWLVI YA KMTQD +QVF+QMR+H + PHLHACTVLLNSL KD +T M
Sbjct: 120 DNQEVNSQVLSWLVIHYAKSKMTQDAIQVFEQMRLHEVKPHLHACTVLLNSLLKDGVTHM 179
Query: 184 VWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIA 243
VWK+YK+MVQ+GVV NI++YN L HAC KS DV++ E+LL EM+ K V D+FTYNTL++
Sbjct: 180 VWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLS 239
Query: 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303
LYCKKGMHYEAL++Q+RMEREGI+ DIV+YNSLI+GFC+EGRMREA R+F +IK ATPNH
Sbjct: 240 LYCKKGMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNH 299
Query: 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNE 363
VTYTTLIDGYC+ N+LEEAL++ ++M AKG+YPGVVTYNSILRKLC++GRIRDAN+LLNE
Sbjct: 300 VTYTTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNE 359
Query: 364 MNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423
M+E+K+ DN+TCNTLINAYCKIGD SA+K KN+MLEAGL D FTYKALIHGFCK E
Sbjct: 360 MSERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNE 419
Query: 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483
++ AKEL+F MLDAGF+PSYC+YSW+VDGY K+N +A+L L DEF+SRG+C+DVSVYRA
Sbjct: 420 LESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEFLSRGICLDVSVYRA 479
Query: 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543
LIR CK E++ A+RLF M+G GI G+SVIYTS+AYAYW G A S +L++M RRR
Sbjct: 480 LIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSAASSMLEEMARRR 539
Query: 544 LMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQLR 589
LMIT+K+YR FS S A +N++ +FW+HV+DRGLMS++ ++Q +
Sbjct: 540 LMITVKLYRCFSTSDANENKVSQIFWNHVMDRGLMSRNTMNKIQQK 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515141|ref|XP_003627859.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355521881|gb|AET02335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/588 (64%), Positives = 480/588 (81%), Gaps = 2/588 (0%)
Query: 1 MASLVALNSDTK-FIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSL 59
M S++ + + K I+++ AI++KG W LL P AS+LTST IH+V+L+L + P
Sbjct: 1 MKSMLMIETSNKHLIESVCAIIVKGDWNNLLKPKTASTLTSTTIHQVILHLKQHRYEPFF 60
Query: 60 SCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119
FFKWA+S +P+Y HSL S W+MIH+LTK++HFK+AQ +L+K+A R+ LS+PSVL +L
Sbjct: 61 IFHFFKWAQS-IPHYTHSLHSSWSMIHMLTKHRHFKTAQQVLDKMAQREILSSPSVLTSL 119
Query: 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR 179
V+IHDDP+ NSHVLSW+VI YA KMT D +QVF+QM + NL PHLHACTVL+NSL KD
Sbjct: 120 VRIHDDPEVNSHVLSWIVIHYAKSKMTHDAVQVFEQMSLCNLKPHLHACTVLMNSLLKDG 179
Query: 180 LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYN 239
+T MVWKVYK+MVQ GVV NI++YN LIHAC KS DV++ E +L EME K V D+FTYN
Sbjct: 180 ITSMVWKVYKRMVQDGVVPNIYVYNCLIHACSKSRDVERAEFILNEMEVKGVVPDIFTYN 239
Query: 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA 299
TLIALYCKKG+HYEAL+VQD+MEREGI+ DIV+YNSLI+GFC+EG+MREA R+F +IK A
Sbjct: 240 TLIALYCKKGLHYEALSVQDKMEREGINLDIVSYNSLIYGFCKEGKMREAMRMFGEIKDA 299
Query: 300 TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANR 359
PNHVTYTTLIDGYC+AN+ EEALRLRE+M AKG+YPGVVTYNSILRKLC +GRIRDAN+
Sbjct: 300 IPNHVTYTTLIDGYCKANEFEEALRLREMMVAKGLYPGVVTYNSILRKLCSDGRIRDANK 359
Query: 360 LLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC 419
LL+EM+E+K+ D+VTCNTLINAYCKIGD SA+K K +MLEAGL + FTYKALIHGFC
Sbjct: 360 LLHEMSERKVQADSVTCNTLINAYCKIGDLNSALKFKTKMLEAGLTPNSFTYKALIHGFC 419
Query: 420 KAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS 479
K E++ AKELLFGMLDAGFSP+Y +YSW+VD YC K+N +A+L L DEF+S+G C+++S
Sbjct: 420 KTSELESAKELLFGMLDAGFSPNYRTYSWIVDSYCKKDNTDAVLALPDEFLSKGFCLNIS 479
Query: 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDM 539
+YRALIRR CK E+++ A++L M+G GI GDSVIYTSLA++YW++G A SD+L++M
Sbjct: 480 LYRALIRRLCKIERIECAEKLLYHMEGKGISGDSVIYTSLAFSYWKSGNTNAASDMLEEM 539
Query: 540 YRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
RRRLMIT+KIYR FSA A N++ +FW HVV+RGLMS++ ++Q
Sbjct: 540 ARRRLMITVKIYRCFSALDASQNKVSQMFWDHVVERGLMSRNTMYKIQ 587
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240991|ref|NP_198689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171307|sp|Q9FKR3.1|PP404_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g38730 gi|10176899|dbj|BAB10131.1| unnamed protein product [Arabidopsis thaliana] gi|332006971|gb|AED94354.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/591 (61%), Positives = 456/591 (77%), Gaps = 6/591 (1%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVL---LNLYNCCHIP 57
M +L++ N + ++I A +LKG+W +L + S L +AI + L+L++ P
Sbjct: 1 MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGP 60
Query: 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117
SLS +FF W +S +P+ KHSLQS W MI ILTK+KHFK+A +L+K+A R+ LS+P VL
Sbjct: 61 SLSWSFFIWTDS-LPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119
Query: 118 ALVK-IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176
+LV + +DP+ SHV SWL+I+YA M D + VF+Q+R L PHL ACTVLLNSL
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLV 179
Query: 177 KDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236
K RLTD VWK++KKMV+LGVVANIH+YNVL+HAC KS D +K EKLL EME K V D+F
Sbjct: 180 KQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIF 239
Query: 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296
TYNTLI++YCKK MH+EAL+VQDRMER G++P+IVTYNS IHGF REGRMREA RLFR+I
Sbjct: 240 TYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI 299
Query: 297 KG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
K T NHVTYTTLIDGYCR ND++EALRLREVM ++G PGVVTYNSILRKLC++GRIR
Sbjct: 300 KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIR 359
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+ANRLL EM+ KKI PDN+TCNTLINAYCKI D SA+KVK +M+E+GL LD ++YKALI
Sbjct: 360 EANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALI 419
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475
HGFCK E++ AKE LF M++ GFSP Y +YSWLVDG+ N+N ++ + KLL+EF RGLC
Sbjct: 420 HGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLC 479
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
DV++YR LIRR CK E+VDYA+ LF M+ G++GDSVI+T++AYAYWR G+ S +
Sbjct: 480 ADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEM 586
D MY RRLM+ LK+Y+S SASYA DN++L FWSHV DR L+SK I +EM
Sbjct: 540 FDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREM 590
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/578 (61%), Positives = 446/578 (77%), Gaps = 6/578 (1%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSL-TSTAIHKVL--LNLYNCCHIP 57
M +L++ N + ++I A +LKG+W +L + S L S+ I +V+ L+LY+ P
Sbjct: 1 MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSSIITQVISELSLYSGYGGP 60
Query: 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117
SLS +F+ W +S +P+ KHSLQS W MI ILTK+ HFK+A +L+K++ R+ LS+P VL
Sbjct: 61 SLSWSFYSWTDS-LPSCKHSLQSSWKMILILTKHNHFKTAHQLLDKLSQRELLSSPLVLR 119
Query: 118 ALVK-IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176
+LV + +DP+ SHV SWL+IFYA M D + VF+Q+ L PHL ACTVLLNSL
Sbjct: 120 SLVGGVSEDPEVLSHVFSWLMIFYAKSGMINDSIAVFEQIMSCGLKPHLQACTVLLNSLV 179
Query: 177 KDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236
K+RLTD VWK++KKMV+LGVVANIH+YNVL+HAC KS D +K EKLL EME K V D+F
Sbjct: 180 KERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSEKAEKLLSEMEEKGVFPDIF 239
Query: 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296
TYNTLI++YCKK MH+EAL+VQDRMER G++PDIVTYNSLIHGF REGRMREA RLFR I
Sbjct: 240 TYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGFSREGRMREATRLFRKI 299
Query: 297 KGAT-PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
KG NHVTYTTLIDGYCR ND++EALRLREVM ++G PGVVTYNSILRKLC++GRIR
Sbjct: 300 KGVVMANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCPGVVTYNSILRKLCEDGRIR 359
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+ANRLL EM+ KKI PDN+TCNTLINAYCKI D SA+KVK +M+E+GL LD ++YKALI
Sbjct: 360 EANRLLTEMSVKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALI 419
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475
HGFCK E+D AKE LF M++ G SP Y +YSWLVDG+ N+N ++ + KL +EF RGLC
Sbjct: 420 HGFCKVLELDNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEITKLPEEFEKRGLC 479
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
DV++YR LIRR CK E+VDYA+ LF M+ G++GDSVIYT++AYAYWR G+ S +
Sbjct: 480 PDVALYRGLIRRICKLEQVDYAKVLFESMEKKGLMGDSVIYTTMAYAYWRTGKVTDASAL 539
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVV 573
D MY RRLM+ LK+Y+S SASYA DN++L FWSH++
Sbjct: 540 FDVMYNRRLMVNLKLYKSLSASYAGDNDVLRFFWSHLM 577
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/592 (55%), Positives = 422/592 (71%), Gaps = 45/592 (7%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLY--NCCHIPS 58
MASLV +T+ K + I++KGHW LL PN+ S+LTST +++VLLNL CC
Sbjct: 26 MASLVFQCGETQLAKIVCGIVVKGHWNSLLKPNVGSNLTSTILNQVLLNLSLDGCC---- 81
Query: 59 LSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA 118
+S AFFKW ES + N+KHSLQS WTMIH L K+K FK+AQN+LE+IA+RD+LS+PSVLNA
Sbjct: 82 VSWAFFKWVESNL-NHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNA 140
Query: 119 LVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD 178
+V+IHDDPD NS +LSWLVIFYAN +MTQD +QVF+ MRVH PHLHACTVLLNSLAK
Sbjct: 141 VVRIHDDPDSNSQILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKA 200
Query: 179 RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTY 238
RLT+MVWKVYKKMV++GVV NIH++NVLIHACCKS DV+K E+LL EME + + DLFTY
Sbjct: 201 RLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTY 260
Query: 239 NTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE-GRMREARRL--FRD 295
NTLI+LYCKKGMHYEAL +QDRMER G+SPDIVTYNSLI+GFCRE + EA RL +
Sbjct: 261 NTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVME 320
Query: 296 IKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
++G P VTY +++ C +++A RL M+ + V P VT N+++ CK G +
Sbjct: 321 VEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMG 380
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
A ++ +M E + PD T LI+ +CK+ + SA + ML+A
Sbjct: 381 SAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA------------- 427
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475
GFSPSY +YSWLVD Y +++N+EA+++L DE +GL
Sbjct: 428 ----------------------GFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLF 465
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
VD+SVYRALIRR CK +K++ A+R+F LMQG G+ GDSV+YTSLAYAY++AG+ A SD+
Sbjct: 466 VDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDM 525
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587
LD+M +RRLMITLKIYR FSASYA D IL LFW HV++R L+SK+I K +Q
Sbjct: 526 LDEMDKRRLMITLKIYRCFSASYAGDGSILGLFWDHVIERRLISKNILKYIQ 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 591 | ||||||
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.989 | 0.981 | 0.604 | 1.6e-191 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.927 | 0.751 | 0.269 | 1.2e-63 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.830 | 0.808 | 0.286 | 4.8e-62 | |
| TAIR|locus:2116372 | 521 | AT4G26680 "AT4G26680" [Arabido | 0.710 | 0.806 | 0.310 | 8.1e-60 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.883 | 0.698 | 0.287 | 1.3e-59 | |
| TAIR|locus:2163218 | 654 | AT5G61400 "AT5G61400" [Arabido | 0.851 | 0.769 | 0.294 | 1.5e-58 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.884 | 0.834 | 0.276 | 1.7e-57 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.950 | 0.900 | 0.278 | 1.1e-55 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.661 | 0.620 | 0.291 | 1.3e-53 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.661 | 0.621 | 0.291 | 2.6e-53 |
| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1856 (658.4 bits), Expect = 1.6e-191, P = 1.6e-191
Identities = 357/591 (60%), Positives = 449/591 (75%)
Query: 1 MASLVALNSDTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIH-KVL--LNLYNCCHIP 57
M +L++ N + ++I A +LKG+W +L + S L +AI +V+ L+L++ P
Sbjct: 1 MVNLLSANREALIAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGP 60
Query: 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117
SLS +FF W +S +P+ KHSLQS W MI ILTK+KHFK+A +L+K+A R+ LS+P VL
Sbjct: 61 SLSWSFFIWTDS-LPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119
Query: 118 ALVK-IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176
+LV + +DP+ SHV SWL+I+YA M D + VF+Q+R L PHL ACTVLLNSL
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLV 179
Query: 177 KDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236
K RLTD VWK++KKMV+LGVVANIH+YNVL+HAC KS D +K EKLL EME K V D+F
Sbjct: 180 KQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIF 239
Query: 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296
TYNTLI++YCKK MH+EAL+VQDRMER G++P+IVTYNS IHGF REGRMREA RLFR+I
Sbjct: 240 TYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI 299
Query: 297 KG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355
K T NHVTYTTLIDGYCR ND++EALRLREVM ++G PGVVTYNSILRKLC++GRIR
Sbjct: 300 KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIR 359
Query: 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+ANRLL EM+ KKI PDN+TCNTLINAYCKI D SA+KVK +M+E+GL LD ++YKALI
Sbjct: 360 EANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALI 419
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCXXXXXXXXXXXXDEFVSRGLC 475
HGFCK E++ AKE LF M++ GFSP Y +YSWLVDG+ +EF RGLC
Sbjct: 420 HGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLC 479
Query: 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDI 535
DV++YR LIRR CK E+VDYA+ LF M+ G++GDSVI+T++AYAYWR G+ S +
Sbjct: 480 ADVALYRGLIRRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
Query: 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEM 586
D MY RRLM+ LK+Y+S SASYA DN++L FWSHV DR L+SK I +EM
Sbjct: 540 FDVMYNRRLMVNLKLYKSISASYAGDNDVLRFFWSHVGDRCLISKSILREM 590
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 149/552 (26%), Positives = 262/552 (47%)
Query: 31 NPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK 90
N N+ + L V+ LY C + +L F PN+KH+ S MIHIL +
Sbjct: 66 NNNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVR 125
Query: 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150
+ AQ+ L ++ R +S ++N+L + N V L+ Y + ++
Sbjct: 126 SGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAH 185
Query: 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210
+ F +R + AC L+ SL + ++ W VY+++ + GV N++ N++++A
Sbjct: 186 EAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNAL 245
Query: 211 CKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270
CK ++KV L +++ K V D+ TYNTLI+ Y KG+ EA + + M +G SP +
Sbjct: 246 CKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGV 305
Query: 271 VTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALRLREV 328
TYN++I+G C+ G+ A+ +F ++ G +P+ TY +L+ C+ D+ E ++
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365
Query: 329 MAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388
M ++ V P +V ++S++ + G + A N + E + PDNV LI YC+ G
Sbjct: 366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425
Query: 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448
+ AM ++N ML+ G +D TY ++HG CK K + A +L M + P + +
Sbjct: 426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485
Query: 449 LVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508
L+DG+C + + + +DV Y L+ F K +D A+ ++ M
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 509 ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD-- 566
IL + Y+ L A G + D+M + + T+ I S Y + D
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 567 LFWSHVVDRGLM 578
F ++ G +
Sbjct: 606 SFLEKMISEGFV 617
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 143/500 (28%), Positives = 259/500 (51%)
Query: 32 PNIASSLTSTAIHKV--LLNLYNCCHIPSLSC-AFFKWAESAVPNYKHSLQSHWTMIHIL 88
P+I L S ++H V L+N +N +P S AFFK+ S P ++ ++++++ + L
Sbjct: 71 PSIRKVLPSLSVHHVVDLIN-HNPLSLPQRSIFAFFKFISSQ-PGFRFTVETYFVLARFL 128
Query: 89 TKNKHFKSAQNMLEKIALRDFL-STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQ 147
++ F AQ+++E + R S SV +LV++ P ++ L+I Y +L
Sbjct: 129 AVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCG-FLVDALMITYTDLGFIP 187
Query: 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207
D +Q F R H + C LL+ + K T +W Y +++ G N++++N+L+
Sbjct: 188 DAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILM 247
Query: 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS 267
+ CK ++ +K+ E+ + ++ + ++NTLI YCK G E ++ +ME+
Sbjct: 248 NKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTR 307
Query: 268 PDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALRL 325
PD+ TY++LI+ C+E +M A LF ++ +G PN V +TTLI G+ R +++
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367
Query: 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385
+ M +KG+ P +V YN+++ CK G + A +++ M + + PD +T TLI+ +C+
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427
Query: 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCS 445
GD +A++++ M + G+ LD+ + AL+ G CK + A+ L ML AG P +
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 446 YSWLVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ 505
Y+ ++D +C E S G V Y L+ CK ++ A L + M
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAML 547
Query: 506 GNGILGDSVIYTSLAYAYWR 525
G++ D + Y +L + R
Sbjct: 548 NIGVVPDDITYNTLLEGHHR 567
|
|
| TAIR|locus:2116372 AT4G26680 "AT4G26680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 133/429 (31%), Positives = 242/429 (56%)
Query: 10 DTKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAES 69
D F+ + +++ W KL N ++ L S + VLL + ++ LS FF WA++
Sbjct: 53 DLDFVNVAHSHLIQSDWDKL-N-KLSDHLDSFRVKNVLLKIQKD-YL--LSLEFFNWAKT 107
Query: 70 AVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPS-VLNALVKIHDDPDG 128
P HSL++H ++H LTKN+ FKSA+++L + + + P+ V +AL+ + + D
Sbjct: 108 RNPG-SHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDS 166
Query: 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVY 188
V L +A+LK ++ F QM+ + +P + +C ++SL D+ + Y
Sbjct: 167 TPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFY 226
Query: 189 KKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK 248
++M + + N + N+++ C+S +DK +LL +ME RA +YNTLIA +C+K
Sbjct: 227 REMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEK 286
Query: 249 GMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT--PNHVTY 306
G+ AL +++ M + G+ P++VT+N+LIHGFCR +++EA ++F ++K PN VTY
Sbjct: 287 GLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTY 346
Query: 307 TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366
TLI+GY + D E A R E M G+ ++TYN+++ LCK+ + R A + + E+++
Sbjct: 347 NTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDK 406
Query: 367 KKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDI 426
+ + P++ T + LI C + ++ M+ +G ++ T+ L+ FC+ ++ D
Sbjct: 407 ENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDG 466
Query: 427 AKELLFGML 435
A ++L M+
Sbjct: 467 ASQVLREMV 475
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 154/535 (28%), Positives = 262/535 (48%)
Query: 22 LKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSH 81
LK H +L +++++ T A +LL N +L F WA P+ +L+
Sbjct: 32 LKRHPYQL--HHLSANFTPEAASNLLLKSQND---QALILKFLNWAN---PHQFFTLRCK 83
Query: 82 WTMIHILTKNKHFKSAQNMLEKIALR--DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF 139
+HILTK K +K+AQ + E +A + D V +L + +D S V +V
Sbjct: 84 CITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKS 143
Query: 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVA 198
Y+ L + L + + H MP + + +L++ + R V+K+M++ V
Sbjct: 144 YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSP 203
Query: 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQ 258
N+ YN+LI C + ++D L +ME K ++ TYNTLI YCK + +
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263
Query: 259 DRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRA 316
M +G+ P++++YN +I+G CREGRM+E + ++ +G + + VTY TLI GYC+
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323
Query: 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC 376
+ +AL + M G+ P V+TY S++ +CK G + A L++M + + P+ T
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436
TL++ + + G A +V M + G TY ALI+G C +M+ A +L M +
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 437 AGFSPSYCSYSWLVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496
G SP SYS ++ G+C E V +G+ D Y +LI+ FC++ +
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIY 551
A L+ M G+ D YT+L AY G+ + + ++M + ++ + Y
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
|
|
| TAIR|locus:2163218 AT5G61400 "AT5G61400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 153/519 (29%), Positives = 254/519 (48%)
Query: 33 NIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK 92
N ASS +S+++ + +L C + F+ + + + + LQS +IH+LT
Sbjct: 34 NSASSFSSSSLAEAILK----CRSAEEAFKLFETSSRSRVSKSNDLQSFSAVIHVLTGAH 89
Query: 93 HFKSAQNMLEKIALR-DFLSTPS-----VLNALVKIHDDPDGNSHVLSWLVIFYANLKMT 146
+ A+ +++ + R S PS + NAL I P + V S L++ + + +
Sbjct: 90 KYTLARCLIKSLIERLKRHSEPSNMSHRLFNALEDIQS-PKFSIGVFSLLIMEFLEMGLF 148
Query: 147 QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206
++ L V +M+ P AC +LN L + R D VW Y+ M+ G+V ++H+Y VL
Sbjct: 149 EEALWVSREMKCS---PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVL 205
Query: 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266
C K K EKLL EM ++ +++ Y I C+ EA + + M++ G+
Sbjct: 206 FQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGV 265
Query: 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT--PNHVTYTTLIDGYCRANDLEEALR 324
P++ TY+++I G+C+ G +R+A L+++I A PN V + TL+DG+C+A +L A
Sbjct: 266 LPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARS 325
Query: 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYC 384
L M GV P + YN ++ CK G + +A LL+EM ++PD T LIN C
Sbjct: 326 LFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLC 385
Query: 385 KIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC 444
A A ++ +M + TY +LIHG+CK M+ A +L M +G P+
Sbjct: 386 IEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNII 445
Query: 445 SYSWLVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLM 504
++S L+DGYC E +G+ DV Y ALI K+ + A RL++ M
Sbjct: 446 TFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDM 505
Query: 505 QGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543
GI + + L +W+ G D + ++R
Sbjct: 506 LEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQR 544
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 147/532 (27%), Positives = 246/532 (46%)
Query: 33 NIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK 92
++A LT + + LL+L P+L+ F + + Y+ Q+ I +++K
Sbjct: 64 HVADKLTPSLVSTTLLSLVKT---PNLAFNFV----NHIDLYRLDFQTQCLAIAVISKLS 116
Query: 93 HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL-SWLVIFYANLKMTQDGLQ 151
K +L+++ S ++ + LV HD + S +L LV L+M + ++
Sbjct: 117 SPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIE 176
Query: 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211
F M+ P C +L L++ + W Y M ++ + +N++ +N++I+ C
Sbjct: 177 CFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLC 236
Query: 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271
K + K + L ME ++ + TYNTL+ + +G A + M+ +G PD+
Sbjct: 237 KEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQ 296
Query: 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA 331
TYN ++ C EGR E R ++I G P+ V+Y LI G DLE A R+ M
Sbjct: 297 TYNPILSWMCNEGRASEVLREMKEI-GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVK 355
Query: 332 KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTAS 391
+G+ P TYN+++ L E +I A L+ E+ EK I D+VT N LIN YC+ GD
Sbjct: 356 QGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKK 415
Query: 392 AMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVD 451
A + + M+ G+ QFTY +LI+ C+ + A EL ++ G P + L+D
Sbjct: 416 AFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMD 475
Query: 452 GYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG 511
G+C E + D Y L+R C + K + A+ L M+ GI
Sbjct: 476 GHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKP 535
Query: 512 DSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNE 563
D + Y +L Y + G+ K + D+M TL Y + +K+ E
Sbjct: 536 DHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQE 587
|
|
| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 161/579 (27%), Positives = 274/579 (47%)
Query: 3 SLVALNSDTKFIKTISAIML-KGHWAKLL-NPNIASSLTSTAIHKVLLNLYNCCHIPSLS 60
S V L+SD + + I+A ++ K KL NP++ +L S VL +P+ S
Sbjct: 23 SPVLLSSDQEAARRITACLVEKSTIGKLQSNPSLLFNLNSNVTRLVLSEPT----LPTQS 78
Query: 61 CA-FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP--SVLN 117
C FFK N K L + T+ H L N+ F +++L + F P + +
Sbjct: 79 CIDFFKLLREFESNLKPDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGS 138
Query: 118 ALVKIHDDPDGNSHVLSWL-VIF--YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS 174
A+V + + ++F Y + M ++GL+VFD M L +C V L +
Sbjct: 139 AMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVA 198
Query: 175 LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234
K R D+ +++++MV GV ++ +++ C+ +V+K +KL+ E K ++ +
Sbjct: 199 AKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPE 258
Query: 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294
+TYNT+I Y K+ V M+++G+ + VTY L+ + G+M +A +LF
Sbjct: 259 AYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFD 318
Query: 295 DIK--GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG 352
+++ G + YT+LI CR +++ A L + + KG+ P TY +++ +CK G
Sbjct: 319 EMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVG 378
Query: 353 RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYK 412
+ A L+NEM K + V NTLI+ YC+ G A + + M + G D FT
Sbjct: 379 EMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCN 438
Query: 413 ALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCXXXXXXXXXXXXDEFVSR 472
+ F + K D AK+ LF M++ G S SY+ L+D YC E S+
Sbjct: 439 TIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK 498
Query: 473 GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKAC 532
G+ + Y +I +CK+ K+ A++L M+ NG+ DS YTSL + A
Sbjct: 499 GVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEA 558
Query: 533 SDILDDMYRRRL---MITLKIYRSFSASYAKDNEILDLF 568
+ +M + L +T + S + K +E L+
Sbjct: 559 MRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLY 597
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 115/395 (29%), Positives = 210/395 (53%)
Query: 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207
+ + + D+M P L V++N L K TD+ + + KM Q + + +YN +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAV-QDRMEREGI 266
CK +D L EME K +R ++ TY++LI+ C G +A + D +ER+ I
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-I 322
Query: 267 SPDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALR 324
+PD+ T+++LI F +EG++ EA +L+ ++ + P+ VTY++LI+G+C + L+EA +
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382
Query: 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYC 384
+ E M +K +P VVTYN++++ CK R+ + + EM+++ + + VT N LI
Sbjct: 383 MFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 442
Query: 385 KIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC 444
+ GD A ++ M+ G+ + TY L+ G CK +++ A + + + P+
Sbjct: 443 QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIY 502
Query: 445 SYSWLVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLM 504
+Y+ +++G C +G+ DV Y +I FC+K + A LF M
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEM 562
Query: 505 QGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDM 539
+ +G L +S Y +L A R G+ +A ++++ +M
Sbjct: 563 KEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 520 (188.1 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 115/395 (29%), Positives = 210/395 (53%)
Query: 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207
+ + + D+M P L ++N L K D+ + KKM + + A++ +Y +I
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262
Query: 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAV-QDRMEREGI 266
A C +V+ L EM+ K +R ++ TYN+LI C G +A + D +ER+ I
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-I 321
Query: 267 SPDIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALR 324
+P++VT+++LI F +EG++ EA +L+ ++ + P+ TY++LI+G+C + L+EA
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYC 384
+ E+M +K +P VVTYN++++ CK R+ + L EM+++ + + VT NTLI
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 441
Query: 385 KIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC 444
+ GD A K+ +M+ G+ D TY L+ G CK +++ A + + + P
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIY 501
Query: 445 SYSWLVDGYCXXXXXXXXXXXXDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLM 504
+Y+ +++G C +G+ +V +Y +I FC+K + A LF M
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Query: 505 QGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDM 539
+ +G L +S Y +L A R G+ A ++++ +M
Sbjct: 562 KEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKR3 | PP404_ARATH | No assigned EC number | 0.6108 | 0.9898 | 0.9815 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 591 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-26
Identities = 86/333 (25%), Positives = 155/333 (46%), Gaps = 14/333 (4%)
Query: 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228
T L+++ AK D +++V+ +MV GV AN+H + LI C ++ V K M
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 229 KDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG--ISPDIVTYNSLIHGFCREGRM 286
K+V+ D +N LI+ + G A V M+ E I PD +T +L+ G++
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 287 REARRLFR-----DIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTY 341
A+ +++ +IKG TP YT ++ + D + AL + + M KGV P V +
Sbjct: 596 DRAKEVYQMIHEYNIKG-TPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 342 NSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401
++++ G + A +L + ++ I V+ ++L+ A + A+++ +
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 402 AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEA 461
L T ALI C+ ++ A E+L M G P+ +YS L+ K++ +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 462 LLKLLDEFVSRGLCVDVSVYRALI----RRFCK 490
L LL + G+ ++ + R + RRF K
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK 805
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 93/400 (23%), Positives = 175/400 (43%), Gaps = 38/400 (9%)
Query: 168 CTVLLNSLAKDRLTDMVWKVY----------KKMV-------QLGVVANIHLYNVLIHAC 210
C LL + K L DM K+Y ++ V +L + +N+L+ C
Sbjct: 389 CIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447
Query: 211 CKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270
S D+D ++L ++ ++AD Y TLI+ K G V M G+ ++
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 271 VTYNSLIHGFCREGRMREARRLF-----RDIKGATPNHVTYTTLIDGYCRANDLEEALRL 325
T+ +LI G R G++ +A + +++K P+ V + LI ++ ++ A +
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVK---PDRVVFNALISACGQSGAVDRAFDV 564
Query: 326 REVMAA--KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI--APDNVTCNTL-I 380
M A + P +T ++++ G++ A + ++E I P+ T+ +
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE---VYTIAV 621
Query: 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFS 440
N+ + GD A+ + + M + G+ D+ + AL+ A ++D A E+L G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 441 PSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500
SYS L+ N N + L+L ++ S L VS ALI C+ ++ A +
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540
+ M+ G+ +++ Y+ L A E K +D+ D+
Sbjct: 742 LSEMKRLGLCPNTITYSIL----LVASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 85/374 (22%), Positives = 159/374 (42%), Gaps = 6/374 (1%)
Query: 152 VFDQMRVHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209
V + R L+ P L +L++ A + D +V + + + G+ A+ LY LI
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269
C KS VD + ++ EM V A++ T+ LI + G +A M + + PD
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541
Query: 270 IVTYNSLIHGFCREGRMREARRLFRDIKGAT----PNHVTYTTLIDGYCRANDLEEALRL 325
V +N+LI + G + A + ++K T P+H+T L+ A ++ A +
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601
Query: 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385
+++ + Y + ++G A + ++M +K + PD V + L++
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCS 445
GD A ++ + G+ L +Y +L+ AK A EL + P+ +
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 446 YSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ 505
+ L+ C N L++L E GLC + Y L+ +K+ D L + +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 506 GNGILGDSVIYTSL 519
+GI + V+ +
Sbjct: 782 EDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 80/352 (22%), Positives = 143/352 (40%), Gaps = 22/352 (6%)
Query: 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210
+VF +M + ++H L++ A+ + Y M V + ++N LI AC
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 211 CKSSDVDKVEKLLCEM--EFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268
+S VD+ +L EM E + D T L+ G A V + I
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 269 DIVTYNSLIHGFCREGRMREARRLFRDI--KGATPNHVTYTTLIDGYCRANDLEEALRLR 326
Y ++ ++G A ++ D+ KG P+ V ++ L+D A DL++A +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI 386
+ +G+ G V+Y+S++ + A L ++ K+ P T N LI A C+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 387 GDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSY 446
A++V + M GL + TY L+ + + D+ +LL + G P+
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
Query: 447 SWLVDGYCNKNNEEAL-------------LKLLDEFVSRGLCVDVSVYRALI 485
+ G C + E+A ++ +++ S L VYR I
Sbjct: 793 RCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL----MVYRETI 839
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 3e-18
Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 268 PDIVTYNSLIHGFCREGRMREARRLFRDIK--GATPNHVTYTTLIDGYCR 315
PD+VTYN+LI G+C++G++ EA +LF ++K G PN TY+ LIDG C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-16
Identities = 92/443 (20%), Positives = 181/443 (40%), Gaps = 50/443 (11%)
Query: 95 KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154
SA+ + +++ RD +S NA++ + + +GL++F
Sbjct: 239 VSARLVFDRMPRRDCIS----WNAMISGYFENG-----------------ECLEGLELFF 277
Query: 155 QMRVHNLMPHLHACTVLLNS---LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211
MR ++ P L T ++++ L +RL +++ +V+ G ++ + N LI
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGR---EMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271
+ EK+ ME KD ++ +I+ Y K G+ +AL ME++ +SPD +
Sbjct: 335 SLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 272 TYNSLIHGFCREGRMREARRL--FRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVM 329
T S++ G + +L + KG V LI+ Y + +++AL + +
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 330 AAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDT 389
K V+++ SI+ L R +A +M + P++VT ++A +IG
Sbjct: 451 PEK----DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGAL 505
Query: 390 ASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFS---PSYCSY 446
++ +L G+ D F AL+ + + M+ A F+ S+
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW--------NQFNSHEKDVVSW 557
Query: 447 SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506
+ L+ GY ++L + V G+ D + +L+ + V F+ M+
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 507 N-GILGDSVIYTSLAYAYWRAGE 528
I + Y + RAG+
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGK 640
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 336 PGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385
P VVTYN+++ CK+G++ +A +L NEM ++ I P+ T + LI+ CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 69/345 (20%), Positives = 130/345 (37%), Gaps = 55/345 (15%)
Query: 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRM- 261
Y+ L+ AC + V+ + +E D + N ++ ++ K GM +A + D M
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 262 EREGISPDIVTYNSLIHGFCREGRMREARRLFRDI------------------------- 296
ER ++ ++ ++I G G REA LFR++
Sbjct: 186 ER-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 297 ------------KGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSI 344
G + LID Y + D+E+A + + M K V +NS+
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSM 296
Query: 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404
L G +A L EM + ++ D T + +I + ++ A + ++ G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW--LVDGYCNKNNEEAL 462
LD AL+ + K M+ A+ +F + P SW L+ GY N
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARN-VFDRM-----PRKNLISWNALIAGYGNHGRGTKA 410
Query: 463 LKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507
+++ + ++ G+ + + A++ + +F M N
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 234 DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282
D+ TYNTLI YCKKG EAL + + M++ GI P++ TY+ LI G C+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 9e-15
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK 350
P+ VTY TLIDGYC+ +EEAL+L M +G+ P V TY+ ++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 9e-15
Identities = 91/337 (27%), Positives = 143/337 (42%), Gaps = 20/337 (5%)
Query: 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAV 257
++ H N + A C +++ KLL M+ V D Y L L K E V
Sbjct: 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRV 108
Query: 258 QDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAN 317
R S + N+++ F R G + A +F K + ++ L+ GY +A
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG--KMPERDLFSWNVLVGGYAKAG 166
Query: 318 DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI----APDN 373
+EAL L M GV P V T+ +LR C G I D R E++ + D
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C--GGIPDLARG-REVHAHVVRFGFELDV 222
Query: 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFG 433
N LI Y K GD SA V +RM D ++ A+I G+ + E EL F
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFT 278
Query: 434 MLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEF-VSRGLCVDVSVYRALIRRFCKKE 492
M + P + + ++ C +E L + + + V G VDVSV +LI+ +
Sbjct: 279 MRELSVDPDLMTITSVISA-CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEP 529
A+++F+ M+ D+V +T++ Y + G P
Sbjct: 338 SWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420
PD VT NTLI+ YCK G A+K+ N M + G+ + +TY LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 43/204 (21%), Positives = 91/204 (44%), Gaps = 3/204 (1%)
Query: 150 LQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209
+V+ + +N+ T+ +NS ++ D +Y M + GV + ++ L+
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269
+ D+DK ++L + + ++ +Y++L+ +AL + + ++ + P
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 270 IVTYNSLIHGFCREGRMREARRLFRDIK--GATPNHVTYTTLIDGYCRANDLEEALRLRE 327
+ T N+LI C ++ +A + ++K G PN +TY+ L+ R +D + L L
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 328 VMAAKGVYPGVVTYNSILRKLCKE 351
G+ P +V I LC
Sbjct: 779 QAKEDGIKPNLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 8e-12
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 265 GISPDIVTYNSLIHGFCREGRMREARRLFRD 295
G+ PD+VTYN+LI G CR GR+ EA L +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 74/335 (22%), Positives = 123/335 (36%), Gaps = 68/335 (20%)
Query: 260 RMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHV---TYTTLIDGYCRA 316
R++ I V+ S I GR REA LF ++ P + TY L
Sbjct: 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDAL------- 129
Query: 317 NDLEEALRLREVMAAKGVY---------PGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367
+E + L+ + K VY P N +L K G + DA RL +EM E+
Sbjct: 130 --VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187
Query: 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE-------------------------- 401
+ + T+I G+ A + M E
Sbjct: 188 NL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 402 ---------AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW--LV 450
G++ D F ALI + K +++ A+ + GM P + +W ++
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSML 297
Query: 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510
GY E L L E G+ +D + +IR F + +++A++ + G
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545
D V T+L Y + G + ++ D M R+ L+
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247
++ YN LI CK V++ KL EM+ + ++ +++TY+ LI CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 3e-10
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 297 KGATPNHVTYTTLIDGYCRANDLEEALRLREVM 329
KG P+ VTY TLIDG CRA ++EA+ L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 14/195 (7%)
Query: 192 VQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251
++ GVV + + LI K D++ + M K A +N+++A Y G
Sbjct: 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYS 306
Query: 252 YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARR----LFRDIKGATPNHVTYT 307
EAL + M G+S D T++ +I F R + A++ L R G + V T
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR--TGFPLDIVANT 364
Query: 308 TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367
L+D Y + +E+A + + M K ++++N+++ GR A + M +
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 368 KIAPDNVTCNTLINA 382
+AP++VT +++A
Sbjct: 421 GVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 73/306 (23%), Positives = 122/306 (39%), Gaps = 41/306 (13%)
Query: 234 DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY-------------------- 273
DLF++N L+ Y K G EAL + RM G+ PD+ T+
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 274 ---------------NSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAND 318
N+LI + + G + AR +F + + +++ +I GY +
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD--RMPRRDCISWNAMISGYFENGE 268
Query: 319 LEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNT 378
E L L M V P ++T S++ G R + + + A D CN+
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328
Query: 379 LINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAG 438
LI Y +G A KV +RM + ++ A+I G+ K D A E M
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 439 FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498
SP + + ++ + + +KL + +GL V V ALI + K + +D A
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 499 RLFNLM 504
+F+ +
Sbjct: 445 EVFHNI 450
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 72/349 (20%), Positives = 133/349 (38%), Gaps = 44/349 (12%)
Query: 151 QVFDQMRVHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208
++ V MP L + VL+ AK D +Y +M+ GV +++ + ++
Sbjct: 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268
C D+ + ++ + D+ N LI +Y K G A V DRM R
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR---- 251
Query: 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLR 326
D +++N++I G+ G E LF ++ P+ +T T++I D +
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311
Query: 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI----------------- 369
+ G V NS+++ G +A ++ + M K
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371
Query: 370 --------------APDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415
+PD +T ++++A +GD +K+ GL+ ALI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC-NKNNEEALL 463
+ K K +D A E+ + + S++ ++ G N EAL+
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALI 476
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 27/238 (11%)
Query: 227 EFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286
+F D+ ++N L+ Y G A+ + +RM G++PD VT+ SL+ R G +
Sbjct: 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 287 REARRLFRDIK---GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNS 343
+ F ++ TPN Y ++D RA L EA M P + +
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGA 662
Query: 344 ILRKLCKEGRIRDANRLLNEMNEKKI---APDNVTCNTLI-NAYCKIGDTASAMKVKNRM 399
+L C+ R + L E+ + I P++V L+ N Y G +V+ M
Sbjct: 663 LLNA-CRIHR----HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 400 LEAGLMLDQ----FTYKALIHGFC-------KAKEMDIAKELLF-GMLDAGFSPSYCS 445
E GL +D K +H F + KE++ E + M +G + S S
Sbjct: 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS 775
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212
P + L++ K + K++ +M + G+ N++ Y++LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 332 KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEM 364
KG+ P VVTYN+++ LC+ GR+ +A LL+EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455
D TY LI G+CK +++ A +L M G P+ +YS L+DG C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 367 KKIAPDNVTCNTLINAYCKIGDTASAMKVKNRM 399
K + PD VT NTLI+ C+ G A+++ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270
TYNTLI CK G EAL + M+ GI PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%)
Query: 341 YNSILRKLCKEGRIRDANRLLNEMNEK-KIAPDNVTCNTLINAYCKI-GDTASAMKVKNR 398
YN +LR +GRI+D LL +M ++ + D + A CK A +
Sbjct: 377 YNRLLR----DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKL 431
Query: 399 MLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNN 458
+ L T+ L+ ++++D A +L + +AG Y+ L+ C K+
Sbjct: 432 IRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST-CAKSG 486
Query: 459 E-EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYT 517
+ +A+ ++ E V+ G+ +V + ALI + +V A + +M+ + D V++
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 518 SLAYAYWRAGEPKACSDILDDM 539
+L A ++G D+L +M
Sbjct: 547 ALISACGQSGAVDRAFDVLAEM 568
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGV 334
VTY +LI GYC+A LEEAL L + M KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV 338
VTY TLIDG C+A +EEAL L + M +G+ P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 271 VTYNSLIHGFCREGRMREARRLFRDIK 297
VTYNSLI G+C+ G++ EA LF+++K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSL 519
DV Y LI +CKK KV+ A +LFN M+ GI + Y+ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 54/217 (24%), Positives = 81/217 (37%), Gaps = 41/217 (18%)
Query: 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVT-------C 376
R R + A NS LR LC G++ A +LL M E ++ D C
Sbjct: 37 RSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC 96
Query: 377 ----------------------------NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ 408
N +++ + + G+ A V +M E D
Sbjct: 97 EWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DL 152
Query: 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDE 468
F++ L+ G+ KA D A L ML AG P ++ V C + A + +
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFP-CVLRTCGGIPDLARGREVHA 211
Query: 469 FVSR-GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLM 504
V R G +DV V ALI + K V A+ +F+ M
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372
VTYN+++ LCK GR+ +A L EM E+ I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 271 VTYNSLIHGFCREGRMREARRLFRDIK 297
VTYN+LI G C+ GR+ EA LF+++K
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK 27
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGI 266
TYN+LI+ YCK G EAL + M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 62/322 (19%), Positives = 126/322 (39%), Gaps = 28/322 (8%)
Query: 274 NSLIHGFCREGRMREARRLFRDIK--GATPNHVTYTTLIDGYC---RANDLEEALRLREV 328
NS + C G++ +A +L ++ + Y L C RA +EE R+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRA--VEEGSRVCSR 111
Query: 329 MAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388
+ GV N++L + G + A + +M E+ D + N L+ Y K G
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGY 167
Query: 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448
A+ + +RML AG+ D +T+ ++ ++ +E+ ++ GF +
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508
L+ Y + + + D R D + A+I + + + LF M+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 509 ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLF 568
+ D + TS+ A ++L D R M + F+ + N ++ ++
Sbjct: 284 VDPDLMTITSVISA----------CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 569 WSHVVDRGLMSKHIFKEMQLRN 590
S + ++ +F M+ ++
Sbjct: 334 LS--LGSWGEAEKVFSRMETKD 353
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 195 GVVANIHLYNVLIHACCKSSDVDKVEKLLCEME 227
G+ ++ YN LI C++ VD+ +LL EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 6e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 229 KDVRADLFTYNTLIALYCKKGMHYEALAVQDRME 262
K ++ D+ TYNTLI C+ G EA+ + D ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 403 GLMLDQFTYKALIHGFCKAKEMDIAKELL 431
GL D TY LI G C+A +D A ELL
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLD 407
VT NTLI+ CK G A+++ M E G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 201 HLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234
YN LI CK+ V++ +L EM+ + + D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404
VT N+LI+ YCK G A+++ M E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268
L TYN L+ K G ALAV + M+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS 442
TY LI G CKA ++ A EL M + G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKI 369
VTYNS++ CK G++ +A L EM EK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDV 231
YN LI CK+ +++ +L EM+ K V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 441 PSYCSYSWLVDGYCNKNN-EEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490
P +Y+ L+DGYC K EEAL KL +E RG+ +V Y LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEAL-KLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARR 291
R +L ++N LIA Y G +A+ + +RM EG++P+ VT+ +++ G +
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 292 LFR---DIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL 348
+F+ + P + Y +I+ R L+EA M + + V + L
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY----AMIRRAPFKPTVNMWAALLTA 503
Query: 349 CKEGRIRDANRLLNE----MNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404
C+ + + RL E M +K+ V L+N Y G A A KV + GL
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVV----LLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 472 RGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ 505
+GL DV Y LI C+ +VD A L + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVYP 336
TY L+ +A D + AL + E M A G+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 282 REGRMREARRLFRDIKGATPNHVTY-TTLIDGYCRANDLEEAL-RLREVMAAK-GVYPGV 338
G+ EA +L + + A P++ Y D AN +EA+ RL++ +A
Sbjct: 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQ 377
Query: 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN-VTCNTLINAYCKIGDTASA 392
+ L K G+ ++A R+LN P++ + L AY ++G+ A A
Sbjct: 378 LNLAQALLKG---GKPQEAIRILNRY--LFNDPEDPNGWDLLAQAYAELGNRAEA 427
|
Length = 484 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 591 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.15 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.84 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.29 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.05 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.92 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.92 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.88 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.79 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.76 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.75 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.64 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.61 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.44 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.08 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.99 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.99 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.84 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.82 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.6 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.27 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.15 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.07 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.05 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.68 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.67 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.46 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.44 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.13 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.08 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.0 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.92 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.83 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.55 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.47 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.26 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.52 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.4 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.28 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.12 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.02 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.9 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 92.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.55 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.52 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.51 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.49 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 92.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.24 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.04 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.92 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.87 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.87 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.55 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.17 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.72 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 90.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.9 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.61 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.37 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.89 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.43 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.41 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.32 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.2 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.12 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.62 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 87.5 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 87.29 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.18 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.1 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.77 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.59 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.51 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.42 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.42 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.02 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.19 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 84.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.14 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.01 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.41 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.41 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.32 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.22 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 82.01 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.39 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.33 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 81.09 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.77 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.69 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 80.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-67 Score=548.28 Aligned_cols=510 Identities=18% Similarity=0.248 Sum_probs=468.5
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|+++.|+++|+++.+... .+.+...+..++..+.+.|.+++|..+++.|.. .+..+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---------------------pd~~T 439 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---------------------PTLST 439 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---------------------CCHHH
Confidence 45888888888888876422 233455556778888888888888888887753 23467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER--EGISPDIVTYNSLIHGFCREGRMREAR 290 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~ 290 (591)
.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 578999999999999999999999999
Q ss_pred HHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 291 RLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 291 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
++|+.|.+ ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999986 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (591)
+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----K-------------------EKVDYAQRLFNLMQ 505 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~ 505 (591)
++.+|++.|+++.|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876532 1 23467999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHHhcCCCChHHHH
Q 048533 506 GNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFK 584 (591)
Q Consensus 506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (591)
+.|+.||..+|+.++.++.+.+..+.+..+++.|...+..|+..+|+++|+++++...-.-.++++|.+.|.++.-.|+
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccc
Confidence 9999999999999998888999999999999999999999999999999999976554444579999999999876554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=537.39 Aligned_cols=486 Identities=20% Similarity=0.294 Sum_probs=451.3
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
...++...+..... ..+...|..+...+.+.|++++|+++|+.|...+..++.. .++..+
T Consensus 353 ~~~~~~~~~~~~~~----~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~----------------v~~~~l 412 (1060)
T PLN03218 353 EENSLAAYNGGVSG----KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK----------------IYHAKF 412 (1060)
T ss_pred hhhhHHHhccccCC----CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH----------------HHHHHH
Confidence 34445555544332 2356667888888999999999999999999987654332 345567
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
+..|.+.|.+++|..+++.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 7889999999999999999875 899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 297 KG----ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 297 ~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
.. ..||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 63 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 373 NVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 373 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----c--
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR----A-- 526 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-- 526 (591)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++..|.+ +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~ 808 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876542 1
Q ss_pred -----------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 527 -----------------GEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 527 -----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
+..++|..+|++|.+.|+.||..+|+.++.++++.+....
T Consensus 809 l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred hhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence 1246799999999999999999999999998888776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=534.65 Aligned_cols=502 Identities=18% Similarity=0.213 Sum_probs=468.1
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.+...+...+.+.|+.+.|+.+|+.+.+ ++..+|+.++.+|.+.|++++|+++|++|...+..++...+..+++
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 4556667778889999999999999742 3678999999999999999999999999999999999888888877
Q ss_pred hcC------------------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH
Q 048533 122 IHD------------------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM 183 (591)
Q Consensus 122 ~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 183 (591)
.+. ....+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 553 2345677899999999999999999999999964 688899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 184 VWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 350 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 264 EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTY 341 (591)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 341 (591)
.||..+|+.++.+|++.|++++|.++|++|.. ..||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..++
T Consensus 351 ---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 47889999999999999999999999999964 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 342 NSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA 421 (591)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (591)
+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 9999999999999999999999875 4888999999999999999999999999986 5899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLF 501 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (591)
|+++.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.+|.+|++.|+.++|.++|
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887 469999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHhhhcchhHHHH
Q 048533 502 NLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY-RRRLMITLKIYRSFSASYAKDNEILDL 567 (591)
Q Consensus 502 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~~ 567 (591)
++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|+.+++
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999 679999999999999999999998875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=522.89 Aligned_cols=505 Identities=18% Similarity=0.242 Sum_probs=474.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....+...+.+.|++++|+.+|+.+... +..++..+|..++.++...+++..+.+++..+.+.+..++..++++++..
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 3445566677789999999999999763 44568899999999999999999999999999999988888888887765
Q ss_pred cC--------------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 048533 123 HD--------------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVY 188 (591)
Q Consensus 123 ~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 188 (591)
+. .+..+..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 42 3345778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 189 KKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 189 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 268 (591)
..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999997 4689999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILR 346 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 346 (591)
|..||+.++.+|++.|++++|.+++..+.+ ..|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA 463 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 999999999999999999999999999975 788999999999999999999999999999975 58889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (591)
+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999986 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 048533 427 AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ- 505 (591)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~- 505 (591)
|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 99999987 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 506 GNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 506 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
+.|+.|+..+|+.++++|.+.|++++|.+++++|. +.||..+|++|+.+|...|+.+.
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHH
Confidence 68999999999999999999999999999999983 78999999999999988877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=497.43 Aligned_cols=472 Identities=16% Similarity=0.177 Sum_probs=444.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|.++|+.|...++. ..+..+|+.++.++.+.++++.|.+++..|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~----------------~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m 149 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPF----------------TLPASTYDALVEACIALKSIRCVKAVYWHV 149 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC----------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3446788999999999999999999999875421 234567888999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
.+.|+.||..+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|...|+.|+..
T Consensus 150 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 9999999999999999999999999999999999964 799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA 316 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 316 (591)
+|+.++.+++..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALH 303 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999997 57999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS-RGLC 475 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~ 475 (591)
++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9986 4689999999999999999999999999999999999999999999999999999999999999986 5899
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFS 555 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (591)
|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.+.. +..+|..|+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~ 535 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLL 535 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHH
Confidence 99999999999999999999999998876 57899999999999999999999999999999765422 467999999
Q ss_pred HhhhcchhHHHH--HHHHHHhcCCC
Q 048533 556 ASYAKDNEILDL--FWSHVVDRGLM 578 (591)
Q Consensus 556 ~~~~~~~~~~~~--~~~~~~~~~~~ 578 (591)
+.|++.|+.+++ +++.|.+.|..
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 999999998875 68888888864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=482.35 Aligned_cols=469 Identities=17% Similarity=0.272 Sum_probs=436.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
+..++..+ .+.|++++|+++|+++....| +.++..+|..++.++.+.++++.|.+++..|.+.+..+
T Consensus 90 ~~~~i~~l-~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~----------- 156 (697)
T PLN03081 90 LCSQIEKL-VACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP----------- 156 (697)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-----------
Confidence 44444443 456999999999999986433 35688999999999999999999999999999887544
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 157 ------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 157 ------DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred ------chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 445788888999999999999999999964 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
|+.++.+|++.|..+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~ 302 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYAL 302 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999996 4699999999999999
Q ss_pred cCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 283 EGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 360 (591)
.|++++|.++|++|.. ..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999964 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCC
Q 048533 361 LNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD-AGF 439 (591)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 439 (591)
|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+
T Consensus 383 f~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 999965 589999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG-DSVIYTS 518 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ 518 (591)
.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHH
Confidence 999999999999999999999999998765 57899999999999999999999999999999764 45 4679999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
++..|.+.|++++|.++++.|.+.|+...
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999998643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=304.06 Aligned_cols=513 Identities=12% Similarity=0.073 Sum_probs=382.1
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
+.+..+...++..+...|++++|...|+.+.+..|. +...+..++..+...|++++|...++.+...++........
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 436 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHH
Confidence 333344445555666667777777777777665554 55666667777777777777777777766654332211110
Q ss_pred ----------------HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh
Q 048533 118 ----------------ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT 181 (591)
Q Consensus 118 ----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 181 (591)
.+-+.....+.++.++..++..|...|++++|++.|+++.+.++. +...+..++..+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCH
Confidence 011111233456667777888888888888888888888776544 566677777788888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 182 DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRM 261 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 261 (591)
+.|.+.|+.+.+.++. +..++..+...+.+.|++++|..+++++...+ +.+...+..++..+...|++++|..+++++
T Consensus 516 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888776544 66777778888888888888888888877664 445667777888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 262 EREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT 340 (591)
Q Consensus 262 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (591)
.+.. +.+..+|..+...+...|++++|...|+.+.+..| +...+..+..++...|++++|..+++.+.+.. +.+..+
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 7653 34667788888888888888888888888776444 45667778888888888888888888887753 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 341 YNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 7888888888888888888888887764 4466777778888888888888888888888764 444667778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 421 AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
.|++++|...++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+..+ .++.+++.+...+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 888888888888888754 45677888888888888888888888888887754 477888888888888888 778888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
++++.+.. +.+..++..+..++...|++++|..+++++.+.+.. ++.++..+..+|.+.|+..+
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 88888752 335567778888888889999999999999887754 78888888888888888877
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=290.54 Aligned_cols=528 Identities=13% Similarity=0.063 Sum_probs=386.0
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH---
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN--- 117 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--- 117 (591)
......+...+...|++++|+..++.+....|. +..++..++.++.+.|++++|.++|+++...++........
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 333444555555667777777777776665544 56666777777777888888888887776654432211110
Q ss_pred -------------HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHH
Q 048533 118 -------------ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMV 184 (591)
Q Consensus 118 -------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 184 (591)
.+.+.....+........++..|.+.|++++|+++++.+....+. +..++..+...+...|++++|
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHH
Confidence 000011122334455556667777777777777777777765433 666777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 185 WKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+.|+++.+..+. +...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|++++|...++++...
T Consensus 485 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 485 REAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888776543 55666677777888888888888888877654 446677777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
+ +.+...+..++..+...|++++|..+++.+... +.+...|..+..++...|++++|...|+.+.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3 235566777888888888888888888887763 3356778888888888888888888888887653 335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 344 ILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 8888888888888888888887753 3356778888888888888888888888887765 3467777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
+++|...+..+...+ |+..++..+..++.+.|++++|.+.++.+.+..+ .+..++..+...|...|++++|...|++
T Consensus 719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 888888888888764 4456777788888888888888888888887654 3778888888888888999999999998
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHhcCCCChH
Q 048533 504 MQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVDRGLMSKH 581 (591)
Q Consensus 504 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~~~~~~~~ 581 (591)
+.+.. +++..++..+...+...|+ .+|+.+++++.+... .++..+..+...|...|+..++ .++++++.+.....
T Consensus 796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 872 (899)
T TIGR02917 796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872 (899)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence 88763 4567788888888888888 778888888888643 2456677788888888887775 57777777666555
Q ss_pred HHH
Q 048533 582 IFK 584 (591)
Q Consensus 582 ~~~ 584 (591)
++-
T Consensus 873 ~~~ 875 (899)
T TIGR02917 873 IRY 875 (899)
T ss_pred HHH
Confidence 543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-24 Score=240.22 Aligned_cols=541 Identities=11% Similarity=0.016 Sum_probs=360.2
Q ss_pred HHHHHHHHHhccccc---hhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHH---------
Q 048533 13 FIKTISAIMLKGHWA---KLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQS--------- 80 (591)
Q Consensus 13 ~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~--------- 80 (591)
+..++.-...+++.. ..+...+...|++..+...+..+....|++++|...++.+.+..|+ +..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~---~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD---SNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHh
Confidence 444444444444432 3333344456666666677777888889999999999999998887 4333
Q ss_pred -------HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH---HHH--------------HHhhcCCCCCccchHHHH
Q 048533 81 -------HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV---LNA--------------LVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 81 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~l 136 (591)
...++..+.+.|++++|.+.|+++...++...... ... +-++....|.+..+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 24456789999999999999999988765543211 111 111223446677888999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCc--------------------------------cCHHhH----------------
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLM--------------------------------PHLHAC---------------- 168 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~---------------- 168 (591)
+..+...|+.++|+..++++.+.... |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999988653210 000000
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC-cccHH---
Q 048533 169 -----TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD-LFTYN--- 239 (591)
Q Consensus 169 -----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~--- 239 (591)
......+...|++++|+..|++..+..+. +...+..+..++.+.|++++|...|++..+...... ...|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01234566789999999999999987654 778888899999999999999999999887642211 11121
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHH
Q 048533 240 ---------TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTL 309 (591)
Q Consensus 240 ---------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l 309 (591)
.....+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++....|+ ...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 224567789999999999999988743 35667788899999999999999999998875555 3344444
Q ss_pred HHHH------------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 310 IDGY------------------------------------------CRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 310 i~~~------------------------------------------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
...| ...|++++|.+.|++..+.. +-+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4333 23444555555555444432 1123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ---------FTYKALIHGF 418 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 418 (591)
+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++. ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 555555555555555544431 112333333333344445555555544443221111111 0112334455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
...|+.++|..+++. .+.+...+..+...+.+.|+.++|+..++++.+..+. +...+..++..+...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777776651 2456667778889999999999999999999987654 7889999999999999999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C---CHHHHHHHHHhhhcchhHHHH
Q 048533 499 RLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM--I---TLKIYRSFSASYAKDNEILDL 567 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~~ 567 (591)
+.++.+.+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|+..++
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999888652 234567788889999999999999999999886432 2 223555667777777776664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-23 Score=229.73 Aligned_cols=523 Identities=13% Similarity=0.023 Sum_probs=347.5
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH-
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL- 116 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 116 (591)
+++....-...+++...++++.|.+.+.++....|+ ++.++..++.++.+.|+.++|.+.++++.+.+|.+.....
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~ 101 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSS 101 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 334333333456777789999999999999998887 8999999999999999999999999999998876544321
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
...+.. ...+......++..+.+.|++++|++.|+.+.+.++.................|+.++|++.++++.+..+
T Consensus 102 ~~~~~~---~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P 178 (1157)
T PRK11447 102 RTTMLL---STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP 178 (1157)
T ss_pred HHHHHh---cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC
Confidence 111111 11122234556667888888888888888888765432221221222222345788888888888887765
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC----------------C----------------cCcccH------
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV----------------R----------------ADLFTY------ 238 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------------~----------------~~~~~~------ 238 (591)
. +...+..+...+...|++++|+..++++..... . |+....
T Consensus 179 ~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 179 G-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 4 566777777888888888888888877643210 0 000000
Q ss_pred ---------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 239 ---------------NTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 239 ---------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
......+...|++++|+..|++..+... .+..++..+...+.+.|++++|+..|++.....|+.
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 0113345567888888888888877532 256777888888888888888888888877655542
Q ss_pred h---hH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 304 V---TY------------TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 304 ~---~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
. .| ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 11 122345667888888888888887763 2345666677778888888888888888877653
Q ss_pred CCCChHHHHH------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 048533 369 IAPDNVTCNT------------------------------------------LINAYCKIGDTASAMKVKNRMLEAGLML 406 (591)
Q Consensus 369 ~~~~~~~~~~------------------------------------------li~~~~~~~~~~~a~~~~~~~~~~~~~~ 406 (591)
.. +...+.. +...+...|++++|...+++..+..+ -
T Consensus 416 p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~ 493 (1157)
T PRK11447 416 PG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-G 493 (1157)
T ss_pred CC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 21 2223222 22334567888888888888877642 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR-------------- 472 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------- 472 (591)
+...+..+...|.+.|++++|...++++++.. +.+...+..+...+...++.++|...++.+...
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 56677778888888888888888888887643 223333322222333344444444433322100
Q ss_pred -------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 473 -------------------------GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 473 -------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
..+.++..+..+...+.+.|++++|+..|+++.+.. +.+...+..++.+|...|
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 123355566778888889999999999999998863 335688888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHh
Q 048533 528 EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVD 574 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~ 574 (591)
++++|.+.++.+.+... .++..+..+..++...|+..++ ..+..++
T Consensus 652 ~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 652 DLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998877532 2455667777888888887764 3555544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-25 Score=203.98 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=344.8
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++..|++.....-..+|. +......+..++.+..+++...+--....+.+ +.-.++|
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~------------------~q~ae~y 119 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN------------------PQGAEAY 119 (966)
T ss_pred ccCHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhcc------------------chHHHHH
Confidence 35666666655555443443 33333344445555555555444433333322 3344678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
+.++..+-..|++++|+.+++.+++..++ .+.+|..+..++...|+.+.|.+.|.+.++.++. ..-....+...+-..
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhh
Confidence 88999999999999999999999998766 7889999999999999999999999999886532 223344455666678
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
|++++|...|.+.++.. +-=..+|..|...+-..|+...|++.|++..+. .|+ ...|..|...|...+.+++|...
T Consensus 198 Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 99999999888877653 234678999999999999999999999998875 444 46788899999999999999999
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
+.+.....|+ ...+..+...|...|.++-|+..|++..+. .|+ +..|+.+..++-..|++.+|...|.+.+... +
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p 351 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-P 351 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-C
Confidence 9998887776 677888888999999999999999999886 343 5689999999999999999999999988863 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLD-QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-YCSYSW 448 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 448 (591)
....+.+.|...+...|.+++|..+|....+. .|. ....+.|...|-+.|++++|...+++.++ +.|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence 35678899999999999999999999988875 333 56788899999999999999999999987 4566 578899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcC
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAG 527 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 527 (591)
+...|...|+.+.|++.+.+++..++. -...++.|...|..+|++.+|++-|++..+ ++||. ..|..++.++---.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999986543 467888999999999999999999999987 46665 67777777765444
Q ss_pred Ch
Q 048533 528 EP 529 (591)
Q Consensus 528 ~~ 529 (591)
++
T Consensus 505 dw 506 (966)
T KOG4626|consen 505 DW 506 (966)
T ss_pred cc
Confidence 43
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=202.08 Aligned_cols=442 Identities=16% Similarity=0.104 Sum_probs=369.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
...+++-+.+.|+|++|.+.....-..++ .+...+..+-..|.+..++++....-....+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~------------------t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP------------------TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC------------------Ccccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 56788889999999999998877665543 233334445566778888888777666666665
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc-HH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT-YN 239 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 239 (591)
+. -.++|..+.+.+...|+++.|+..|+.+++..++ ....|..+..++...|+.+.|.+.|.+.++.+ |+... ..
T Consensus 113 ~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 113 PQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred ch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 44 6789999999999999999999999999998765 78899999999999999999999999988763 55443 34
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRAN 317 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g 317 (591)
.+...+...|+.++|...|.+.++. .|. ...|+.|...+-..|+...|+..|++.....|+ ...|-.+...|...+
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 4556666789999999999998876 343 467899999999999999999999999998898 678999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 318 DLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
.+++|...|.+.... .|+ ...+..+...|...|.++-|+..|++.++.... -...|+.|..++-..|++.+|...|
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 999999999888765 444 566777777889999999999999999987322 4578999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (591)
.+..... +......+.|...+...|.+++|..+|....+.. |. ....+.|...|.++|++++|+..+++++.. .
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 9998874 3357889999999999999999999999998743 44 467888999999999999999999999975 4
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 048533 476 VD-VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITL-KIYR 552 (591)
Q Consensus 476 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 552 (591)
|+ ...|+.+...|...|+.+.|.+.+.+.+.. .|.. ..++.|...|...|+..+|++-|++.++ ++||. ..|.
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~c 494 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYC 494 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhh
Confidence 44 568999999999999999999999999974 5554 7889999999999999999999999999 45664 3566
Q ss_pred HHHHhh
Q 048533 553 SFSASY 558 (591)
Q Consensus 553 ~li~~~ 558 (591)
.+++++
T Consensus 495 Nllh~l 500 (966)
T KOG4626|consen 495 NLLHCL 500 (966)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-20 Score=198.94 Aligned_cols=497 Identities=13% Similarity=0.069 Sum_probs=312.6
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH-------------
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV------------- 120 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------- 120 (591)
.|++++|+..|+.+++..|+ +..++..++.+|.+.|++++|+..+++..+.++.. ......+.
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~---n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-~~~~~~La~i~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD---NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-ARLERSLAAIPVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHhccChhHHHHHH
Confidence 37777777777777777776 67777777777777777777777777777765521 11111111
Q ss_pred hhcCCCCCccchHHHHHHH--------HHhcCChHHHHHHHHHHhhCCCccCHHhHHHH-HHHHHhcCChhHHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIF--------YANLKMTQDGLQVFDQMRVHNLMPHLHACTVL-LNSLAKDRLTDMVWKVYKKM 191 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~ 191 (591)
++....|.+.+++..++.. |.+.++..++++ .....+.|+..+.... .+.|.+.|+++.|++.+.++
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1222345566666666665 555544444443 2222233334434433 67777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC
Q 048533 192 VQLGVVANIHLYNVLIHACCK-SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PD 269 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~ 269 (591)
.+.++. +......+..+|.. .++ +.+..+++.. ++.+...+..++..+.+.|+.++|.+.+.++...-.. |.
T Consensus 209 ~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 209 RQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 776644 44445555556665 355 5555554421 2235666666777777777777776666665432111 11
Q ss_pred HHHH------------------------------HHHHHHH---------------------------------------
Q 048533 270 IVTY------------------------------NSLIHGF--------------------------------------- 280 (591)
Q Consensus 270 ~~~~------------------------------~~l~~~~--------------------------------------- 280 (591)
..++ ..++..+
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 1111 0001222
Q ss_pred ------------------------HhcCCHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCC---HHHHHHH----
Q 048533 281 ------------------------CREGRMREARRLFRDIKGATP----NHVTYTTLIDGYCRAND---LEEALRL---- 325 (591)
Q Consensus 281 ------------------------~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~---~~~a~~~---- 325 (591)
...|+.++|.++|+......+ +....+.++..|.+.+. ..++..+
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 234555555555555433211 12223344555555444 2222111
Q ss_pred ------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 048533 326 ------------------REVMAAK-GV-YP--GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAY 383 (591)
Q Consensus 326 ------------------~~~~~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (591)
++..... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHH
Confidence 1111111 11 22 45556666666655 7888888878777765 35544444445555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALL 463 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (591)
...|++++|...|+++... +|+...+..+...+.+.|++++|...++..++.. +.+...+..+.......|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 7899999999999987665 4455556677788889999999999999998865 233333444444455669999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
..++++.+.. |+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+..
T Consensus 597 ~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999864 468889999999999999999999999999863 3356788889999999999999999999999975
Q ss_pred CCCCHHHHHHHHHhhhcchhHHHH--HHHHHHh
Q 048533 544 LMITLKIYRSFSASYAKDNEILDL--FWSHVVD 574 (591)
Q Consensus 544 ~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~ 574 (591)
. -++..+..+..++...|+.+++ .+++.++
T Consensus 674 P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 674 P-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3567888999999999988764 3555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-21 Score=188.30 Aligned_cols=505 Identities=12% Similarity=0.034 Sum_probs=369.7
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH-------------
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV------------- 120 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------- 120 (591)
.+++..|+.+|..++..+|..+.++. ..++..+.+.|+.+.|+..|+++.+.+|.+...+..-.+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 48999999999999998998766664 456788889999999999999999988754433321111
Q ss_pred ------hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 121 ------KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 121 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
+.+...+.+|.+++.|...|.-.|++..+..+...+...... .-...|..+.+++...|+++.|...|....
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 122344668888899999999999999999988888776422 123468888899999999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCC
Q 048533 193 QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG----MHYEALAVQDRMEREGISP 268 (591)
Q Consensus 193 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~p 268 (591)
+.........+--+...+.+.|+++.+...|+.+.... +-+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 76544223445567788889999999999999888763 445667777777777664 4566677776666553 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC---
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG------ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK---GVYP--- 336 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p--- 336 (591)
|...|..+...+...+.+.. +.+|..+.. ..+-....|.+...+...|++.+|...|+..... ...+
T Consensus 413 d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 67778777777765544333 666655531 2356777888888888899999999888887654 1122
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 337 ---GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKA 413 (591)
Q Consensus 337 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (591)
+..+-..+..++-..++.+.|.+.|..+++.. +--...|..++......+...+|...++...... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 22233445556667788889999999888762 2122334444433344567888888888887764 346677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 414 LIHGFCKAKEMDIAKELLFGMLDAG-FSPSYCSYSWLVDGYCN------------KNNEEALLKLLDEFVSRGLCVDVSV 480 (591)
Q Consensus 414 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~ 480 (591)
+...+.+...+..|..-|..+.... ..+|..+.-.|...|.. .+..+.|+++|.++++..+. |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 7778888888888888776666432 23566666666665542 23467899999999987665 8889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSASYA 559 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~ 559 (591)
-|.+.-+++..|++.+|..+|.+.++.. .-...+|..+.++|.-+|+|-.|+++|+...+. +...+......|.+++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999863 336688999999999999999999999999886 55567888999999999
Q ss_pred cchhHHHH
Q 048533 560 KDNEILDL 567 (591)
Q Consensus 560 ~~~~~~~~ 567 (591)
+.|.+.++
T Consensus 728 ~~~~~~ea 735 (1018)
T KOG2002|consen 728 EAGKLQEA 735 (1018)
T ss_pred HhhhHHHH
Confidence 99987664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-19 Score=190.67 Aligned_cols=197 Identities=13% Similarity=0.006 Sum_probs=142.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVD 451 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (591)
+...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 34455555555555 6777788877777665 355444444455556889999999999887654 344455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhH
Q 048533 452 GYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKA 531 (591)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 531 (591)
.+.+.|+.++|...++.+.+.++. +...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 888899999999999999886532 3333444444455669999999999999875 5678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHH--HHHHHHhcCC
Q 048533 532 CSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDL--FWSHVVDRGL 577 (591)
Q Consensus 532 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~--~~~~~~~~~~ 577 (591)
|...++++.+.... ++..++.+...+...|+..++ .....++...
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999997533 566788888888888888775 3555554433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-19 Score=187.88 Aligned_cols=254 Identities=11% Similarity=-0.022 Sum_probs=141.0
Q ss_pred CCHHHHHHHHHHhhcC---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 284 GRMREARRLFRDIKGA---TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 284 g~~~~A~~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
+++++|.+.|+..... .| ....+..+...+...|++++|...+++..... +-....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555666666555432 12 23345555555555666666666666655542 1123445555555556666666666
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 360 LLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF 439 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 439 (591)
.++..++.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|...+++.++..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 666655542 22445566666666666666666666666655532 234555556666666666666666666665532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 048533 440 SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS------VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS 513 (591)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 513 (591)
+.+...+..+...+...|++++|++.|+++.+.....+.. .++..+..+...|++++|.+++++..+.+ +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 2345556666666666666666666666666543221111 11222222333567777777777766542 1233
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..+..++.++.+.|++++|+++|+++.+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777777777777777777776664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=193.15 Aligned_cols=302 Identities=16% Similarity=0.120 Sum_probs=229.2
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|++++|+..|+.+.+..|+ +..++..++..+...|++++|..+++.+.......... ...
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------~~~ 108 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------RLL 108 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH--------------HHH
Confidence 3458999999999999988776 78888999999999999999999999988643211110 113
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI----HLYNVLI 207 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll 207 (591)
++..++..|.+.|++++|+.+|+++.+.++ ++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 567788889999999999999999988654 36778899999999999999999999999887654322 2345566
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 77788888888888888887653 33455677777888888888888888888876533222456677778888888888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK---EGRIRDANRLLNEM 364 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 364 (591)
+|...++++....|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++.+
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 888888887766677666677777788888888888888777765 4677777777766654 44777788888777
Q ss_pred HhCCCCCChH
Q 048533 365 NEKKIAPDNV 374 (591)
Q Consensus 365 ~~~~~~~~~~ 374 (591)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 7766555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-19 Score=187.55 Aligned_cols=334 Identities=11% Similarity=0.004 Sum_probs=218.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC 246 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (591)
-...++..+.+.|+++.|..+++......+. +...+..++.+....|+++.|...++++.... |.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455566666777777777777777766555 34444445555666777777777777776653 335566667777777
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+....|+.......+..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777777776642 224556666777777777777777777766554443222222223466677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHC
Q 048533 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTAS----AMKVKNRMLEA 402 (591)
Q Consensus 327 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~ 402 (591)
+.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 776665333334444445566677777777777777777653 3355666777777777777764 67777777766
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 403 GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYR 482 (591)
Q Consensus 403 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (591)
.+ .+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|...++.+.+.++. +...+.
T Consensus 280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~ 356 (656)
T PRK15174 280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNR 356 (656)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHH
Confidence 42 356677777777778888888888888777654 234556666777777788888888888777765432 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+..++...|++++|...|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556677778888888888877764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-19 Score=179.03 Aligned_cols=473 Identities=13% Similarity=0.048 Sum_probs=364.1
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
..+.+++..+..+-..+|. ++.+...|+..+...|+++.++++.+.+..... ........+.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~---nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---------------~~~~~aes~Y 311 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE---NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---------------NKSIKAESFY 311 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC---CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---------------hhHHHHHHHH
Confidence 4566777777777665554 777888888888888899988888888876431 0112335689
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
+++++|..+|++++|...|.+..+.+..-.+..+-.+...+...|+.+.+...|+.+.+..+. +..+...+...|...+
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhh
Confidence 999999999999999999999998865533667788899999999999999999999998654 6677777777787775
Q ss_pred ----ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 215 ----DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRME----REGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 215 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
..+.|..++.+..... +.|...|-.+...+....- ..++..|.... ..+-.+.+...|.+...+...|++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 5677888888877664 5678888888887765544 44477666543 455557888999999999999999
Q ss_pred HHHHHHHHHhhcC-----CCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 048533 287 REARRLFRDIKGA-----TPNH------VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV-VTYNSILRKLCKEGRI 354 (591)
Q Consensus 287 ~~A~~~~~~~~~~-----~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 354 (591)
++|...|....+. .++. .+--.+..++-..++++.|.+.|..+.+. .|+- ..|..++......+..
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCc
Confidence 9999999998652 2222 22334566667778999999999999886 3443 3444444333455788
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------c
Q 048533 355 RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG-LMLDQFTYKALIHGFCK------------A 421 (591)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~ 421 (591)
.+|...++...... ..++..+..+...+.+..++..|.+-|+.+.+.- ..+|..+...|...|.+ .
T Consensus 547 ~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k 625 (1018)
T KOG2002|consen 547 YEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK 625 (1018)
T ss_pred HHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence 99999999988753 3467778888889999999988888777776542 23566776667765542 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLF 501 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 501 (591)
+..++|.++|.++++.. +.|...-+.+.-+++..|++..|..+|.+..+.... ...+|-.+..+|..+|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 45678999999999865 457777788888999999999999999999987432 5678899999999999999999999
Q ss_pred HHHHhC-CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 502 NLMQGN-GILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRS 553 (591)
Q Consensus 502 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 553 (591)
+...+. ...-+..+...|..++.+.|++.+|.+....++..-+..+.+.+|.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 987763 4445678899999999999999999999999998766655566664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-19 Score=182.08 Aligned_cols=402 Identities=12% Similarity=-0.065 Sum_probs=294.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+...+..+.+.|++++|+..|++++...+ ++..+..+..+|.+.|++++|++.++.+++.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-------------------~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~ 190 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-------------------DPVYYSNRAACHNALGDWEKVVEDTTAALELD 190 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 44678899999999999999999887543 23467778889999999999999999999987
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh------------
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF------------ 228 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------ 228 (591)
+. +..++..+..++...|++++|+.-|..+...+...+.. ...++..+........+...++.-..
T Consensus 191 p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 191 PD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 65 77889999999999999999998887766543221221 11111111110001111111110000
Q ss_pred -------------C--CCCcC-cccHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 048533 229 -------------K--DVRAD-LFTYNTLIALY---CKKGMHYEALAVQDRMEREG-ISP-DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 229 -------------~--~~~~~-~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 287 (591)
. ...++ ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 0 00000 01111111111 22468899999999998764 223 4567888888889999999
Q ss_pred HHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 288 EARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
+|+..+++.....|+ ...|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.++
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999887776 5578888899999999999999999988764 33577888888999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--
Q 048533 367 KKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC-- 444 (591)
Q Consensus 367 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 444 (591)
.. +.+...+..+..++.+.|++++|...++...+.. +.+...++.+...+...|++++|...|++.++.....+..
T Consensus 428 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~ 505 (615)
T TIGR00990 428 LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505 (615)
T ss_pred cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence 74 3366778888899999999999999999988764 3467888999999999999999999999998754221111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 445 ----SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 445 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.++.....+...|++++|.++++++.+.++. +...+..+...+...|++++|++.|++..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122223344469999999999999887543 5667889999999999999999999998874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-21 Score=187.32 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=198.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHc
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN---IHLYNVLIHACCK 212 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 212 (591)
.+..+...|++++|+..|+++.+.++. +..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...+.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888887654 667788888888888888888888888877532221 2456777788888
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 288 (591)
.|++++|..+|+++.... +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 345667788888888888888888888888775433221 234455666667777777
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...|+++.+..|+ ...+..+...+.+.|++++|.++++++...+......++..+..+|...|++++|...++.+.+.
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777776654443 44555666667777777777777777665432222344556666666666666666666666654
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK---AKEMDIAKELLFGMLDAGFSPSY 443 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 443 (591)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 234444556666666666666666666666554 3555556555555443 34566666666666654444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-19 Score=184.16 Aligned_cols=322 Identities=12% Similarity=0.014 Sum_probs=208.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|++++|+.+++..+...|. ...++..++..+...|++++|...++++...+ |.+...
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------------------P~~~~a 112 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------------------VCQPED 112 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------------------CCChHH
Confidence 447777777777777776665 56666666666677777777777777776644 444556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|...++.+....+.+ ...+..+ ..+..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~ 189 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHH
Confidence 777777777777777777777777776543 56666777777777777777777777766654432 2233222 23566
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE---- 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---- 288 (591)
.|++++|...++.+......++...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHH
Confidence 777777777777766553223333444455666677777777777777766532 245566667777777777764
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...|++.....|+ ...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+.+.
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 67777776665554 4566667777777777777777777776653 223445556666677777777777777777664
Q ss_pred CCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 368 KIAPDN-VTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 368 ~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 348 ~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 348 K--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred C--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2 232 23333455666777777777777776665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-17 Score=172.94 Aligned_cols=440 Identities=13% Similarity=0.092 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
+.+...-+....++|+++.|+..|+++.+.++..... ++ -++..+...|+.++|+..+++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~a-----------------v~-dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQ-----------------VD-DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhh-----------------HH-HHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344444445555555555555555555543221111 11 33334445555555555555555
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
.... .+......+...+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...
T Consensus 96 ~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 96 SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 2111 12222233344555555555555555555555443 3444444555555555555555555555544 233333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChhhH------HHHH
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHVTY------TTLI 310 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~------~~li 310 (591)
+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-++ ..+....+ ...+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 3333333333344444555555555542 11344445555555555555555555544332 11110000 0001
Q ss_pred HHH-----HhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH
Q 048533 311 DGY-----CRAND---LEEALRLREVMAAK-GVYPGV-V----TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC 376 (591)
Q Consensus 311 ~~~-----~~~g~---~~~a~~~~~~~~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 376 (591)
+.- ....+ .+.|+.-++.+... +..|.. . ...-.+.++...|+..++++.|+.+...+.+....+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 000 01112 34455555555542 212321 1 1223445667788888999999888887766555677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------C
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGL-----MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF-----------S 440 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~ 440 (591)
..+.++|...+++++|..+|..+..... .++......|..++...+++++|..+++++.+... .
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 8888888888999999999988866431 22344457788888889999999999998886321 1
Q ss_pred CC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC-HHHH
Q 048533 441 PS--Y-CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGD-SVIY 516 (591)
Q Consensus 441 ~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~ 516 (591)
|+ . ..+..++..+...|+..+|++.++++....+. |......+...+...|.+.+|.+.++..... .|+ ..+.
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~ 487 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILE 487 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHH
Confidence 22 2 23445677788899999999999999887654 8889999999999999999999999777664 444 4677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 517 TSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
...+.++...|++.+|..+.+.+.+..
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 788888999999999999999888853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-18 Score=178.05 Aligned_cols=406 Identities=12% Similarity=0.049 Sum_probs=312.8
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
++....=.+.+....|+.++|++++.+...... .+...+..+..++...|++++|.++|++..+..+. +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 333444456678889999999999999987443 36667999999999999999999999999987554 5677778888
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 288 (591)
++...|++++|...+++..... +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998873 44566 888999999999999999999999987433 55666778888889999999
Q ss_pred HHHHHHHhhcCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHH
Q 048533 289 ARRLFRDIKGATPNH------VTYTTLIDGYC-----RANDL---EEALRLREVMAAK-GVYPGVV-TY----NSILRKL 348 (591)
Q Consensus 289 A~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~p~~~-~~----~~ll~~~ 348 (591)
|++.++.... .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 9999988775 4432 11222233222 12234 7788888888854 2223221 11 1113455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCH
Q 048533 349 CKEGRIRDANRLLNEMNEKKIA-PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML---DQFTYKALIHGFCKAKEM 424 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 424 (591)
...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++....... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6779999999999999987532 322 22335778999999999999999987754221 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 425 DIAKELLFGMLDAGF-----------SPS---YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 425 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
++|..+++.+..... .|+ ...+..+...+...|+.++|++.++++....+. +...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 999999999987531 123 234566778888999999999999999987554 78899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.|++++|++.++++.+.. +.+...+...+..+.+.|++++|..+++++++..
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999863 3345777888889999999999999999999964
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-17 Score=171.75 Aligned_cols=434 Identities=10% Similarity=0.013 Sum_probs=325.9
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.+.|+++.|++.|+.+.+..|. +.....-++.++...|+.++|+..+++..... +....
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~------------------n~~~~ 103 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM------------------NISSR 103 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC------------------CCCHH
Confidence 4469999999999999998887 42222278888889999999999999987321 11122
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
.+..++..|...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++.+.+.. |+...+..++..+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHH
Confidence 3333466899999999999999999999877 67888888999999999999999999998874 44555555555555
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY------NSLIHGF----- 280 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~------~~l~~~~----- 280 (591)
..++..+|++.++++...+ |.+...+..+..++.+.|-...|.++..+-... +.+...-+ ...++.-
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677767999999999885 446778888999999999999998877653321 11111111 1111110
Q ss_pred HhcCCH---HHHHHHHHHhhc---CCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 281 CREGRM---REARRLFRDIKG---ATPNH-VTY----TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 281 ~~~g~~---~~A~~~~~~~~~---~~~~~-~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
...+++ +.|+.-++.+.. ..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+..+|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 011233 334444444443 22322 222 2345677889999999999999999887656678899999999
Q ss_pred hcCCHHHHHHHHHHHHhCC-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------CCCH-HH
Q 048533 350 KEGRIRDANRLLNEMNEKK-----IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL-------------MLDQ-FT 410 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~ 410 (591)
..+++++|+.+++.+.... .+++......|.-++...+++++|..+++.+.+..+ .||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999997653 123344457889999999999999999999987421 1222 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
+..++..+.-.|++.+|++.++++.... +-|......+...+...|.+..|++.++.+....+. +..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHh
Confidence 4556777889999999999999998765 568889999999999999999999999888776444 67788888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHH
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVI 515 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~ 515 (591)
.|++++|..+.+.+.+. .|+...
T Consensus 497 l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 497 LQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred hhhHHHHHHHHHHHHhh--CCCchh
Confidence 99999999999999885 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-18 Score=184.25 Aligned_cols=407 Identities=8% Similarity=-0.022 Sum_probs=229.8
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|+.++|++.+..+....|. +..++..++.++.+.|++++|..+++++.... |.++..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~---~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a 85 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQL---PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE------------------PQNDDY 85 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHH
Confidence 346666666666555432332 44445556666666666666666666655432 233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
...++.++...|++++|+..++++.+..+. +.. +..+..++...|+.+.|+..++++.+..+. +...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 555555556666666666666666555433 333 555555555566666666666666555443 34444445555555
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCH-
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGF-----CREGRM- 286 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~- 286 (591)
.|..+.|++.++.... .|+. ..-+ .......++... ...+++
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~---~~~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~ 210 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAE---KRDL--------------------------EADAAAELVRLSFMPTRSEKERYA 210 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHH---HHHH--------------------------HHHHHHHHHHhhcccccChhHHHH
Confidence 5555555555554432 1110 0000 000001111111 111222
Q ss_pred --HHHHHHHHHhhc---CCCChh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHH
Q 048533 287 --REARRLFRDIKG---ATPNHV-TY----TTLIDGYCRANDLEEALRLREVMAAKGVY-PGVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 287 --~~A~~~~~~~~~---~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~ 355 (591)
++|+..++.+.. ..|+.. .+ ...+..+...|++++|...|+.+.+.+.. |+. ....+...+...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 555655555543 122211 11 11123344557777777777777665421 221 1122355666777777
Q ss_pred HHHHHHHHHHhCCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHH
Q 048533 356 DANRLLNEMNEKKIAP---DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL-----------MLD---QFTYKALIHGF 418 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 418 (591)
+|+..|+.+.+..... .......+..++...|++++|...++.+..... .|+ ...+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 7777777766542111 123445555566777777777777777665421 123 23455667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
...|++++|..+++++.... +.+...+..+...+...|++++|++.++++.+..+. +...+..++..+...|++++|.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 88899999999999888754 445777888888888899999999999988887543 5667777777888889999999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHH
Q 048533 499 RLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
.+++++++. .|+......+-
T Consensus 448 ~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 448 VLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHH
Confidence 999999875 45554333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-15 Score=141.60 Aligned_cols=481 Identities=9% Similarity=0.004 Sum_probs=357.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+++.|.-++..+.+-.|. +.+.+. +|++..-|+.|..++.+..+ ..|.++.++.
T Consensus 390 E~~~darilL~rAveccp~---s~dLwl----AlarLetYenAkkvLNkaRe------------------~iptd~~IWi 444 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQ---SMDLWL----ALARLETYENAKKVLNKARE------------------IIPTDREIWI 444 (913)
T ss_pred cChHHHHHHHHHHHHhccc---hHHHHH----HHHHHHHHHHHHHHHHHHHh------------------hCCCChhHHH
Confidence 3455566666666665554 444333 34445556666666666655 2355666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh----hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMR----VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN--IHLYNVLIH 208 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~ 208 (591)
.....--.+|+.+...+++.+.+ ..|+..+...|..=...|-..|..-.+..+....+..|+.-. ..+|..-..
T Consensus 445 taa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~ 524 (913)
T KOG0495|consen 445 TAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQ 524 (913)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHH
Confidence 77777778888888888877643 457778888888888888888888888888888887776532 357777788
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 288 (591)
.|.+.+.++-|..+|...++- .+-+...|......--..|..++...+|++.... ++-....|......+-..|++..
T Consensus 525 ~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 525 SCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 888888888888888887765 2446677887777777788888888888888876 33345566666777778899999
Q ss_pred HHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|..++..+-+..|+ ...|-..+.....+.+++.|..+|.+.... .|+...|..-+...--.+..++|.+++++.++.
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999888775554 667888888888889999999999888765 466666666666666678889999999888876
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYS 447 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (591)
++--...|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|..+...--+.|.+-+|..++++..-.+ +.+...|-
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwl 757 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWL 757 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHH
Confidence 3334467788888888888999888888765544 33456667777777778888999999999888766 45677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 448 WLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 448 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
..++.-.+.|+.+.|..+..++++. ++.+...|..-|....+.++-......+++. .-|+.....+...+....
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHH
Confidence 8888888999999999998888875 4457777888887777766655555444443 447888888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch--hHHHHHHHHHHh
Q 048533 528 EPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN--EILDLFWSHVVD 574 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~~~~~~~~~ 574 (591)
+++.|.+.|++.++.+.. ...+|..+...+.++| +..+...++|..
T Consensus 832 k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999998643 4668888889999988 444456666643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-15 Score=137.57 Aligned_cols=455 Identities=16% Similarity=0.184 Sum_probs=309.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH---HHHHHH--HH-------hcCChHHH
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL---SWLVIF--YA-------NLKMTQDG 149 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--~~-------~~~~~~~A 149 (591)
++++. +..+|..+++.=+|+.|...|....+.+...++++..........| .+.+.. +. +.|.+ |
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v--A 196 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV--A 196 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH--H
Confidence 34443 4578999999999999999999999998888887654333222221 111111 00 11111 2
Q ss_pred HHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhC
Q 048533 150 LQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 229 (591)
. ++-+.. ++ +..++..+|.++++-...++|.++|++......+.+..+||.+|.+-.-..+ .+++.+|...
T Consensus 197 d-L~~E~~---PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq 267 (625)
T KOG4422|consen 197 D-LLFETL---PK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ 267 (625)
T ss_pred H-HHHhhc---CC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh
Confidence 2 222222 22 6679999999999999999999999999888888899999999976554332 7899999999
Q ss_pred CCCcCcccHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhh----c--
Q 048533 230 DVRADLFTYNTLIALYCKKGMHYE----ALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE-ARRLFRDIK----G-- 298 (591)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----~-- 298 (591)
...||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++. +
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 999999999999999999998875 56788899999999999999999999999888744 555555553 2
Q ss_pred ---CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 299 ---ATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKG----VYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 299 ---~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
..| |..-|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....|+....+.....|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 223 34557778888888899888888876655431 2233 234677788889999999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYS 447 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (591)
-.-|+..+...++++....|.++-..++|.++...|.......- ++++..+.+....|+...-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPERE 491 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHH
Confidence 88889999999999999999999999999998887643322222 23333343333333322111
Q ss_pred HHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcCHHHH---HHHHH
Q 048533 448 WLVDGYCNK-NNE-EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG-ILGDSVIY---TSLAY 521 (591)
Q Consensus 448 ~l~~~~~~~-g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~---~~l~~ 521 (591)
.+-....+. -++ +.....-.++.+. ...+...+.+.-.+.+.|..++|.+++..+..++ -.|..... .-+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111111110 111 1122222333333 3355666677777788888888888888885432 22233333 35666
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHH
Q 048533 522 AYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 566 (591)
.-.+.+++..|...++-|.......-...-+.+...|.-+.+..+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~ 614 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKE 614 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHH
Confidence 666777888888888888776554333355566666665544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-14 Score=141.17 Aligned_cols=487 Identities=14% Similarity=0.096 Sum_probs=341.1
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+|+.+.|..++..++++.|. ...+|.+|+.+|-+.|+.+++....-.+...+ |.+...|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------------------p~d~e~W 210 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------------------PKDYELW 210 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------------------CCChHHH
Confidence 49999999999999998887 88999999999999999999988876665544 4445778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH----HHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL----IHA 209 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~ 209 (591)
..+.....+.|++.+|.-.|.++++.++. +....-.-+..|-+.|+...|...|.++.+..++.|..-+..+ +..
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 88999999999999999999999999865 6666677778899999999999999999998664444444443 455
Q ss_pred HHccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------------------
Q 048533 210 CCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD------------------- 269 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------------------- 269 (591)
+...++-+.|.+.++.....+ -..+...++.++..+.+...++.+......+......+|
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 667788899999988877632 234566788999999999999999998888776222222
Q ss_pred --------HHH-HHHHHHHHHhcCCHHHHHHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 270 --------IVT-YNSLIHGFCREGRMREARRLFRDIKG--ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV 338 (591)
Q Consensus 270 --------~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 338 (591)
..+ ...+.-...+.++..+++..+-.... ...+...|.-+..+|...|++.+|+++|..+......-+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 222 11122222334455555555544444 2334667888999999999999999999999987655577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCHHH
Q 048533 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA--------GLMLDQFT 410 (591)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~ 410 (591)
..|..+..+|...|..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+++..+..- +..|+...
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 889999999999999999999999998863 235556667788899999999999999886522 23344445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAG-----FSP-----------------SYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
.......+.+.|+.++-..+...|+... +-| .......+..+-.+.++.....+-...
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 5556667788888887666555554311 111 111122223333333332211111111
Q ss_pred H------HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCH---HHHHHHHHHHHHcCChhHHHHH
Q 048533 469 F------VSRGLCVD--VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGDS---VIYTSLAYAYWRAGEPKACSDI 535 (591)
Q Consensus 469 ~------~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~ 535 (591)
- ...++..+ -..+..++.++.+.+++++|..+...+..... .++. ..-...+.+....+++..|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 11122111 13456778888999999999999998886422 1121 2234566778889999999999
Q ss_pred HHHHHHC-CCCCC---HHHHHHHHHhhhcchh
Q 048533 536 LDDMYRR-RLMIT---LKIYRSFSASYAKDNE 563 (591)
Q Consensus 536 ~~~~~~~-~~~~~---~~~~~~li~~~~~~~~ 563 (591)
++.|... +...+ ...||...+.+.+.++
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999876 22222 3356655566666555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-16 Score=141.09 Aligned_cols=458 Identities=12% Similarity=0.082 Sum_probs=271.0
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|...|..+.-..+|+..|+-..+. .-++.......+++.++.+...|.+|+..|+-++..-+....
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink------------- 272 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK------------- 272 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch-------------
Confidence 345555556677888888877663 333446666678899999999999999999888775443221
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-------
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN------- 199 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 199 (591)
+....+++.+...|.+.|++++|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|...-..||
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~ 350 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKE 350 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCC
Confidence 123345666667799999999999999998886 46766655556666667899999999999876532222
Q ss_pred -----HHHHHHHH-----HHHHccCC--hhhHHHHHHHHhhCCCCcCccc---H------------------HHHHHHHH
Q 048533 200 -----IHLYNVLI-----HACCKSSD--VDKVEKLLCEMEFKDVRADLFT---Y------------------NTLIALYC 246 (591)
Q Consensus 200 -----~~~~~~ll-----~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~ 246 (591)
....+.-+ +-..+.++ -++++-.--+++.--+.||-.. | ..-...+.
T Consensus 351 ~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l 430 (840)
T KOG2003|consen 351 KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL 430 (840)
T ss_pred cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 22222222 22222211 1222222222221111222110 0 01122355
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR--EGRMREARRLFRDIKGA-TPNHVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~ 323 (591)
++|+++.|++++.-+.+..-+.....-+.|...+.- ..++..|..+-+..... .-+......-.......|++++|.
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~ 510 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAA 510 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHH
Confidence 677777777777766654333222233333322222 23566666666555431 122222222223334467777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
+.|++....+.......|+ +.-.+-..|++++|++.|-++... +..+...+..+.+.|-...+...|++++.+....
T Consensus 511 ~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 7777776653221222222 222345667777777777655332 1225556666677777777777777777665544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 404 LMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
++.|+...+.|...|-+.|+-..|.+.+-+--+. ++-+..+..+|...|....-+++++.+|+++.- +.|+..-|..
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 4556777777777777777777777666554432 355666777777777777777777777776643 4567777776
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 484 LIRRF-CKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 484 l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
++..| .+.|++.+|..+|+....+ ++.|...+..|++.+...|
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 66544 4567777777777777665 5666777777777776665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-14 Score=131.94 Aligned_cols=429 Identities=10% Similarity=0.100 Sum_probs=327.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
++--..++++..|..+|++++..+.. +...|...+..-.+++.+..|..++++.+..-+..|. .|-..+..--..|++
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhccc
Confidence 33344578889999999999998765 8889999999999999999999999999986444333 444556666778999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
..|.++|++...- .|+..+|.+.|..-.+-+..+.|..+|++..-- .|++.+|......-.+.|....|..+|...
T Consensus 158 ~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 158 AGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999998764 799999999999999999999999999999864 799999999999999999999999999988
Q ss_pred hcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHH--------H
Q 048533 297 KGATP----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG---VVTYNSILRKLCKEGRIRDANRL--------L 361 (591)
Q Consensus 297 ~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~--------~ 361 (591)
.+.-- +...+.+....-.++..++.|.-+|+-..+. -|. ...|......--+.|+....... |
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 75222 2334555555556678899999999988876 233 23444444444455654433332 3
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHH---HhcCCHHHHHHHHH
Q 048533 362 NEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQF------TYKALIHGF---CKAKEMDIAKELLF 432 (591)
Q Consensus 362 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~~~~~~a~~~~~ 432 (591)
+.+...+ +-|-.+|--.++.....|+.+...++|++++..-++.... .|.-+=.++ ....+.+.+.++++
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444443 4477889999999999999999999999998763322221 122221222 35789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 433 GMLDAGFSPSYCSYSWLVDGY----CNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
..++. ++....||..+--.| .++.++..|.+++..++ |..|...+|...|..-.+.++++.+++++++.++.+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99883 344556665544333 46789999999999887 567889999999999999999999999999999974
Q ss_pred CCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhhcchhHHHHHHHHHHhcCCCChHHHHHHH
Q 048533 509 ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRL-MITLKIYRSFSASYAKDNEILDLFWSHVVDRGLMSKHIFKEMQ 587 (591)
Q Consensus 509 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
+.|..+|......-...|+.+.|..+|+-++.... ......|.+.|+.=...|++.+ ++.+|+++.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek------------aR~LYerlL 534 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK------------ARALYERLL 534 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH------------HHHHHHHHH
Confidence 33679999999999999999999999999998732 2224467788887777888777 566666655
Q ss_pred hhc
Q 048533 588 LRN 590 (591)
Q Consensus 588 ~~~ 590 (591)
+++
T Consensus 535 ~rt 537 (677)
T KOG1915|consen 535 DRT 537 (677)
T ss_pred Hhc
Confidence 543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-16 Score=140.47 Aligned_cols=425 Identities=13% Similarity=0.096 Sum_probs=290.7
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC-TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH----LY 203 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~ 203 (591)
+..++..|++-|..+.+..+|+..|+.+.+...-|+.-.+ ..+.+.+.+.+.+.+|++.|+..+..-+..+.. ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 4456667788888899999999999998887766665443 234567778888999999998877654333333 34
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------------CHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP------------DIV 271 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p------------~~~ 271 (591)
+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....| +..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44445577889999999999987765 4676666666667777888899999999887643222 222
Q ss_pred HHHHHH-----HHHHhcCCHHHHHHHHHH---hhc--CCCChhh---HH------------------HHHHHHHhcCCHH
Q 048533 272 TYNSLI-----HGFCREGRMREARRLFRD---IKG--ATPNHVT---YT------------------TLIDGYCRANDLE 320 (591)
Q Consensus 272 ~~~~l~-----~~~~~~g~~~~A~~~~~~---~~~--~~~~~~~---~~------------------~li~~~~~~g~~~ 320 (591)
..+..+ .-..+.+. ..|.+..-. +.. +.|+... |. .-...|.+.|+++
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 222222 11222111 122222211 111 2232211 10 1133477888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH------------------------------------HHHHHhcCCHHHHHHHHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSI------------------------------------LRKLCKEGRIRDANRLLNEM 364 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~l------------------------------------l~~~~~~~~~~~a~~~~~~~ 364 (591)
.|.++++-..+.+-+.-...-+.+ .......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 888887776654322111111111 01112357889999999988
Q ss_pred HhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048533 365 NEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYC 444 (591)
Q Consensus 365 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 444 (591)
+...-. -...+..+.-.+-..|++++|++.|-++... +..+..+...+...|....+...|.+++.+.... ++.|+.
T Consensus 517 l~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 517 LNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 876222 1122223334567789999999999877543 1346777778888888899999999998877653 567789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAY- 523 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~- 523 (591)
+++.|...|-+.|+-..|.+.+-.--.. ++-+..+..-|..-|....-+++++.+|++..- +.|+..-|..++..|
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 9999999999999999998876554443 455788888888888888899999999999875 689999998876655
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchh
Q 048533 524 WRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNE 563 (591)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 563 (591)
.+.|+++.|..+|++.-++ ++-|..++..|++.++..|-
T Consensus 671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5789999999999999887 66689999999999988774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-13 Score=128.87 Aligned_cols=473 Identities=12% Similarity=0.026 Sum_probs=372.8
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
-|++-.+--.|.++ ..|+.|-.++.++.+..|. +..+|.+-+..=-.+|+.+....++.+....
T Consensus 406 cp~s~dLwlAlarL----etYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~--------- 469 (913)
T KOG0495|consen 406 CPQSMDLWLALARL----ETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSE--------- 469 (913)
T ss_pred ccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------
Confidence 45555554555555 4588999999999998887 7777777788778889888877777654331
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
+.. .+...+.+-+..-+..+-..|.+--+..+....+.-|+.- ...+|..-...|.+.+.++-|..+|...++.
T Consensus 470 --L~~--ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 470 --LQA--NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred --Hhh--cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 000 0122334445555667777888888888888887776642 3458999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 195 GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN 274 (591)
Q Consensus 195 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 274 (591)
-+. +...|......--..|..+....++++.... ++.....|......+...|+...|..++....+.... +...|.
T Consensus 546 fp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwl 622 (913)
T KOG0495|consen 546 FPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWL 622 (913)
T ss_pred ccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHH
Confidence 544 6778888777777789999999999998876 4566777888888888999999999999999887544 667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 048533 275 SLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV-VTYNSILRKLCKEGR 353 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~ 353 (591)
..+.......+++.|..+|.+.....|+...|..-+....-.+..++|.+++++..+. -|+- ..|-.+...+-+.++
T Consensus 623 aavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 8889999999999999999999998899999888887777789999999999999886 4443 456666777888899
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 354 IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFG 433 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 433 (591)
++.|...|..-.+. ++-..-.|..|...--+.|.+-+|..++++..-.+++ +...|...++.-.+.|+.+.|..++.+
T Consensus 701 ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888776654 4556678888888888999999999999999887644 788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 048533 434 MLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS 513 (591)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 513 (591)
.++.. +.+...|..-|....+.++-......+++ +.-|+.+...+...+.....+++|++.|.+..+.+ +.+.
T Consensus 779 ALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~G 851 (913)
T KOG0495|consen 779 ALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNG 851 (913)
T ss_pred HHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccc
Confidence 98764 34455666666666666664444433332 23478888888888999999999999999999863 2245
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.+|.-+...+.+.|.-++-.+++.......
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 899999999999998888888888887753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-14 Score=138.51 Aligned_cols=487 Identities=11% Similarity=0.077 Sum_probs=318.5
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
..-...|+.+|..+|+.++|+.++--|.+.+|+ +..-|..++....++|++++|.-.|.++++.+|..+.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~------- 242 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE------- 242 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH-------
Confidence 334567899999999999999999999888887 6677888999999999999999999999998765543
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC----TVLLNSLAKDRLTDMVWKVYKKMVQLG- 195 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~- 195 (591)
.+.--...|-+.|+...|..-|.++....++.+..-+ ..+++.+...++-+.|++.++.....+
T Consensus 243 -----------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 243 -----------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred -----------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 3444566799999999999999999998764443333 344566677787899999998887632
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC---------------------------cCcccHHHHHHHHHhc
Q 048533 196 VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR---------------------------ADLFTYNTLIALYCKK 248 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~li~~~~~~ 248 (591)
-..+...++.++..+.+...++.|......+..+... ++... -.++-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 2235567888899999999999998887777652111 12222 1233344555
Q ss_pred CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 048533 249 GMHYEALAVQDRMEREGIS--PDIVTYNSLIHGFCREGRMREARRLFRDIKGATP--NHVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 324 (591)
+..+....+...+.+..+. -+...|..+..++...|++.+|..+|..+...++ +...|-.+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 5555555566666666533 3456788889999999999999999999886444 35688889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE--------KKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
.|+...... +.+...-..|-..+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-..+-
T Consensus 471 ~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 471 FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999988763 22445556677778889999999999887542 223444555555566666777766644444
Q ss_pred HHHHHCC-----CCC--------------------------------------------------------CH----HHH
Q 048533 397 NRMLEAG-----LML--------------------------------------------------------DQ----FTY 411 (591)
Q Consensus 397 ~~~~~~~-----~~~--------------------------------------------------------~~----~~~ 411 (591)
..|+... +-| +. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 3332210 000 00 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHH
Q 048533 412 KALIHGFCKAKEMDIAKELLFGMLDAGF--SPSY---CSYSWLVDGYCNKNNEEALLKLLDEFVSR-GLC---VDVSVYR 482 (591)
Q Consensus 412 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~ 482 (591)
..++..+++.+++++|..+...+.+... .++. ..-...+.+....+++..|...++.+... +.. --...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445566677777777777776665321 1111 11223345556677777777777777654 111 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYR 552 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (591)
...+.+.+.++-.--.+++..+......-++.......+-....+.+..|.+.+-++... .||.+..+
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~n 777 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLIN 777 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHH
Confidence 455555555544444444444443322222333334444556667777888866666553 35544433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-14 Score=126.47 Aligned_cols=456 Identities=12% Similarity=0.109 Sum_probs=306.5
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHcCCCch-HHHHHHHHHHHcCCCCchHHH-HHHHhh-cCCCCCc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIH--ILTKNKHFK-SAQNMLEKIALRDFLSTPSVL-NALVKI-HDDPDGN 129 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~--~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 129 (591)
+....++-+|+.+... +.+.+..+...+.. .|..+.+.. --++.|-.|.+.+-.+....- .++..+ .+..|.+
T Consensus 129 ~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 129 REVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred cccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 7788899999998754 33456665554433 333333333 335556556554433322111 122222 1345778
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++.+.++-...+.|.++|.+......+.+..+||.+|.+-.-.. ..++..+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 89999999999999999999999999999888889999999998765433 37899999999999999999999999
Q ss_pred HHccCChhhH----HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC----CCC---C-CHHHHHHH
Q 048533 210 CCKSSDVDKV----EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE-ALAVQDRMERE----GIS---P-DIVTYNSL 276 (591)
Q Consensus 210 ~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~----~~~---p-~~~~~~~l 276 (591)
..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ +..++.++... .++ | |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 9999988764 5778889999999999999999999999888755 44444544432 222 2 34566777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKG------ATPN---HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
+..|.+..+.+-|.++..-+.. ..|+ ..-|..+....|.....+....+|+.|.-.-.-|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 8888899999988888776653 3343 234667778888899999999999999988788899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQF---TYKALIHGFCKAKEM 424 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 424 (591)
....+.++-.-+++.++...|.......-. +++..+.+....|+.. -+.....-++. ++
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~ 504 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTPEREQLQVAFAKCAA--DI 504 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HH
Confidence 999999999999999998876443333222 2333333333333211 22222211110 11
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 425 DI-AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG----LCVDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 425 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
.+ ....-.++....+ .....+.+.-.+.+.|+.++|.+++..+.+.+ ..|.......+++.......+..|..
T Consensus 505 ~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 11 1222233333333 34456666667778888888888888875443 12333344466666677788888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHH
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (591)
+++.|...+.+.-...-+.+...|.-+....+|+.-+
T Consensus 583 ~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 583 VLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred HHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 8888877654433334455566665555444554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-13 Score=120.74 Aligned_cols=457 Identities=11% Similarity=0.032 Sum_probs=319.7
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+++...|..+|+.|+..... +...+..-+..=.++.+...|..+++++...-|..+ +.+
T Consensus 86 q~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd------------------qlW 144 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD------------------QLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH------------------HHH
Confidence 46677888888888764322 455566677778888888888888888776433222 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..-+-+--..|++..|.++|++-.+- .|+..+|++.++.-.+.+.++.|..+|++.+-. .|++..|.-..+.-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 33344445578999999999887764 688899999999999999999999999988764 47888888888888889
Q ss_pred CChhhHHHHHHHHhhC-CC-CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH---
Q 048533 214 SDVDKVEKLLCEMEFK-DV-RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGRMR--- 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--- 287 (591)
|+...+..+|+..... |- ..+...+.+....-.++..++.|.-+|.-.+..-.... ...|......--+-|+..
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999998887653 10 11122344444444456778888888887776522211 234444444434445533
Q ss_pred HHHHHHHH-----hh-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHH-----H---HHHHHhc
Q 048533 288 EARRLFRD-----IK-GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVV--TYNS-----I---LRKLCKE 351 (591)
Q Consensus 288 ~A~~~~~~-----~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~-----l---l~~~~~~ 351 (591)
.++--=++ .. ..+-|-.+|--.++.-...|+.+...++|+..... ++|-.. .|.. + +-.-...
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322222 22 24456778888888888889999999999999875 444221 1111 1 1111346
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTL----INAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIA 427 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 427 (591)
.+.+.+.++|+..++. ++-...|+.-+ .....+..++..|.+++...+. ..|-..+|...|..-.+.++++.+
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHH
Confidence 7889999999998884 44444554443 3344567889999999887764 478889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG-LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
..++++.++.+ +-+..+|......-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|+.+++++.+
T Consensus 457 RkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999999876 3466778777777778999999999999998763 233456788888888889999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHH-----HcC-----------ChhHHHHHHHHHHHC
Q 048533 507 NGILGDSVIYTSLAYAYW-----RAG-----------EPKACSDILDDMYRR 542 (591)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 542 (591)
. .+...+|.....--. +.| ....|.++|+++...
T Consensus 536 r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 536 R--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred h--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 5 334456666554433 333 456788888887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-14 Score=124.95 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=232.0
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.+++.++..+=..+ ++++++|.+.|-.+.+..|+ +.++..+|+..+.+.|..++|+.++..+..+.........
T Consensus 34 ~lsr~Yv~GlNfLL---s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 34 RLSRDYVKGLNFLL---SNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred hccHHHHhHHHHHh---hcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 45566665553333 27899999999999987776 8999999999999999999999999998875432222222
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
.+...|+.-|...|-++.|.++|..+.+.+.- -..+...|+..|-..++|++|+++-+++.+.+.
T Consensus 108 --------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 108 --------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred --------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 23455777899999999999999999885433 456889999999999999999999999999876
Q ss_pred CCCH----HHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 197 VANI----HLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 197 ~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
.+.. ..|--+...+....+++.|..++.+..+.+ +..+.+--.+.......|+++.|.+.++...+.+..--..+
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 6443 245556666667788999999999988765 33555566677888899999999999999998855444567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE- 351 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~- 351 (591)
...|..+|...|+.++....+..+.+..++...-..+...-....-.+.|...+.+-... .|+...+..++..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 788889999999999999999988876777666666666555555566666665554444 58888888888765532
Q ss_pred --CCHHHHHHHHHHHHh
Q 048533 352 --GRIRDANRLLNEMNE 366 (591)
Q Consensus 352 --~~~~~a~~~~~~~~~ 366 (591)
|...+...+++.|..
T Consensus 330 eeg~~k~sL~~lr~mvg 346 (389)
T COG2956 330 EEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccchhhhHHHHHHHHH
Confidence 345555556666544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-12 Score=117.86 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC 454 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (591)
|+..+.+.|+-.++.++|..+|++..+.+.. ....|+.+.+-|...++...|.+-++.+++.+ +.|...|-.+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444444444445555555555555444311 33444444445555555555555555555433 234445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHH
Q 048533 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 534 (591)
-.+...-|+-+|+++.+..+. |+..|..|+++|.+.++.++|++.|++....| ..+...+..+.+.|-+.++.++|.+
T Consensus 410 im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555555544222 45555555555555555555555555555432 1133445555555555555555555
Q ss_pred HHHHHHH
Q 048533 535 ILDDMYR 541 (591)
Q Consensus 535 ~~~~~~~ 541 (591)
.|++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-12 Score=127.07 Aligned_cols=285 Identities=9% Similarity=0.026 Sum_probs=187.1
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|++++|.+.+....+....| ...+.....+..+.|+++.|.+.+.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887777665543222 2223333445567888888888888887654332222222335677788888888888
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI-------VTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
++++.+.+ |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 88887765 445677777888888888888888888888877554222 1233333333444556666677766
Q ss_pred hhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 296 IKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 296 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
+.. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +-|..
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~ 329 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPL 329 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHH
Confidence 654 3335666777777888888888888888777764 344422 12233334577777777777777653 33556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777765 56777777777777777777777777776653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-12 Score=126.90 Aligned_cols=284 Identities=13% Similarity=0.052 Sum_probs=191.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHH--HHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYT--TLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~ 325 (591)
.|+++.|.+.+....+..-.| ...+..........|+++.|..++.++.+..|+..... .....+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467777766666544431111 12222233444666777777777777766555543322 224566667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN-------VTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776654 224566666677777777777777777777766543222 1223333333344455666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 399 MLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (591)
+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+..+. |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CH
Confidence 5433 2447778888888899999999999999888874 3554322 233444568899999999998887554 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78889999999999999999999999874 68888888999999999999999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-12 Score=126.78 Aligned_cols=289 Identities=10% Similarity=-0.016 Sum_probs=150.5
Q ss_pred hcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHH
Q 048533 142 NLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEK 221 (591)
Q Consensus 142 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 221 (591)
..|+++.|.+.+.+..+..+. ....+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345666666666555554322 1222333345555556666666666665544322222233333555555666666666
Q ss_pred HHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCC----HHHHHHHHH
Q 048533 222 LLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIH---GFCREGR----MREARRLFR 294 (591)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~----~~~A~~~~~ 294 (591)
.++.+.+.. |.+..++..+...+...|++++|.+.+..+.+.++.++......-.. .....+. .+...+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665553 33444555566666666666666666666665543322111110011 1111122 222233333
Q ss_pred Hhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 295 DIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT---YNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 295 ~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
.... .+.+...+..++..+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.. +
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 2221 11255566666667777777777777777666652 23221 0111111223456666777776666542 2
Q ss_pred CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 371 PDN--VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 371 ~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234 45556777777777777777777743333335677667777777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-13 Score=129.31 Aligned_cols=294 Identities=12% Similarity=0.003 Sum_probs=155.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+......|+++.|.+.+.+..+..+ .....+...+.++.+.|+++.|.+.+.++.+..+.+.
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~------------------~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA------------------EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 3444555666666666655544321 1111223334556666666666666666655443322
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHH-HHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYN-TLIA 243 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~ 243 (591)
..........+...|+++.|.+.++.+.+.++. +..++..+...+...|+++.|.+++..+.+.+.. +...+. .-..
T Consensus 153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~ 230 (409)
T TIGR00540 153 ILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQK 230 (409)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 223333456666666666666666666666544 4555666666666666666666666666665432 222221 1111
Q ss_pred ---HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhH---HHHHHHHH
Q 048533 244 ---LYCKKGMHYEALAVQDRMEREGIS---PDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTY---TTLIDGYC 314 (591)
Q Consensus 244 ---~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~li~~~~ 314 (591)
.....+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+.+++..+..||.... ........
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence 112222333333344444433111 255566666666666666666666666666544544321 11112223
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGV--VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
..++.+.+.+.++...+.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|
T Consensus 311 ~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455666666666655541 1123 344455666666666666666666433323355666666666666666666666
Q ss_pred HHHHHHH
Q 048533 393 MKVKNRM 399 (591)
Q Consensus 393 ~~~~~~~ 399 (591)
.++|++.
T Consensus 390 ~~~~~~~ 396 (409)
T TIGR00540 390 AAMRQDS 396 (409)
T ss_pred HHHHHHH
Confidence 6666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-12 Score=115.66 Aligned_cols=431 Identities=11% Similarity=-0.036 Sum_probs=262.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+.+.-+.++|+|++|++.|..++... |+.+..|.....+|...|+++++++--...++.++.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~------------------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC------------------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC------------------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 46777888889999999998888753 333567777888888889999888888888887544
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMV-QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL 241 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (591)
-..++..-..++-..|++++|+.=..-.. -.|+. +..+--.+=+.+-+ .|..-.++-.+.+-+|...+-. .
T Consensus 182 -Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~-f 253 (606)
T KOG0547|consen 182 -YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT-F 253 (606)
T ss_pred -HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH-H
Confidence 35566666677777777777653222111 11121 11111111111111 1111122211111122222221 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHh-cCCHHHHHHHHHHhhc---CCC-----Ch-----
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHG----FCR-EGRMREARRLFRDIKG---ATP-----NH----- 303 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~-~g~~~~A~~~~~~~~~---~~~-----~~----- 303 (591)
|..|...=..+ .......+.......+..+ +.. ...+..|...+.+-.. ..+ |.
T Consensus 254 i~syf~sF~~~--------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 254 IASYFGSFHAD--------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred HHHHHhhcccc--------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 22221100000 0000000000111111111 111 0123444443333211 111 11
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 048533 304 -VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINA 382 (591)
Q Consensus 304 -~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 382 (591)
.+.......+.-.|+.-.|..-|+...+....++. .|..+...|....+.++.++.|+...+.+.. ++.+|..-...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH
Confidence 11222222344578888999999998887544332 2777777888999999999999998887533 77788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 383 YCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEAL 462 (591)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (591)
..-.+++++|..-|++.....+ -+...|.-+..+..+.+++++++..|++.++. ++..+..|+.....+..+++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 8888999999999999988742 25666777777778899999999999999875 455678899999999999999999
Q ss_pred HHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHH
Q 048533 463 LKLLDEFVSRGLC-------VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 463 ~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 534 (591)
.+.|+.+++.... +.+.+-..++.. .-.+++..|..++.+..+. .|.. ..|..|...-.+.|+.++|++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999876332 112222233322 2348999999999999985 3433 678899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 535 ILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
+|++.... ..+..-++++|.
T Consensus 559 lFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 559 LFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred HHHHHHHH-----HHhHHHHHHHHH
Confidence 99988763 234444444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-12 Score=118.15 Aligned_cols=417 Identities=11% Similarity=-0.026 Sum_probs=251.4
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
..++-+.++|.++.|+++|.++++..|+ .+.-|.+.+.+|...|+|++.++...+..+.+
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~---epiFYsNraAcY~~lgd~~~Vied~TkALEl~----------------- 179 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPD---EPIFYSNRAACYESLGDWEKVIEDCTKALELN----------------- 179 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCC---CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-----------------
Confidence 3455566779999999999999998775 35556689999999999999999988888765
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhh-CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV-HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-LG--VVANIH 201 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~ 201 (591)
|+...++..-..++-..|++++|+.=..-..- .|+. |..+-..+=+.+-+ .|....++-.+ .+ +-|+..
T Consensus 180 -P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~ 252 (606)
T KOG0547|consen 180 -PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT 252 (606)
T ss_pred -cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH
Confidence 33344555667788888998888753222111 1221 22221111122211 22222222222 22 224443
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh--cC---ChhHHHHHHHHHHHC---CCCCC----
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK--KG---MHYEALAVQDRMERE---GISPD---- 269 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~~~~~---~~~p~---- 269 (591)
...+....+...-.+ .+. .+.......+..++.. .+ .+..|.+.+.+-... ....+
T Consensus 253 fi~syf~sF~~~~~~--------~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~ 320 (606)
T KOG0547|consen 253 FIASYFGSFHADPKP--------LFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDA 320 (606)
T ss_pred HHHHHHhhccccccc--------ccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccch
Confidence 333333333211000 000 0000111111111110 01 222222222221110 00001
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 270 -----IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVT-YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 270 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
..+...-.-.+.-.|+...|..-|+......|.... |--+...|...++.++..+.|+...+.+.. ++.+|..
T Consensus 321 ~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyH 399 (606)
T KOG0547|consen 321 ELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYH 399 (606)
T ss_pred hHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHh
Confidence 112222222344567888888888888775554444 777778888888888888888888876532 5556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 344 ILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
-.....-.+++++|..=|++.+.... .+...|..+..+..+.++++++...|++..+. ++..+..|+.....+...++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ 477 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh
Confidence 66666667888888888888877632 24556666666677788888888888888776 34567888888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 424 MDIAKELLFGMLDAGFS-------PSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
++.|.+.|+..++.... +.+.+--.++..-. .+++..|.+++.++.+.+++ ....|..|...-.+.|+.++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHH
Confidence 99999888888764211 11111112222112 37889999999999887655 56778888888899999999
Q ss_pred HHHHHHHHHh
Q 048533 497 AQRLFNLMQG 506 (591)
Q Consensus 497 a~~~~~~~~~ 506 (591)
|+++|++...
T Consensus 556 AielFEksa~ 565 (606)
T KOG0547|consen 556 AIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-12 Score=114.21 Aligned_cols=377 Identities=12% Similarity=0.027 Sum_probs=214.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH-LYNVLIHACC 211 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~ 211 (591)
+...+..+.+.|....|+..|......-+. .-.+|..|...+.. +++.......+...+.. .---+..++.
T Consensus 167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 444455566677777777777666654333 44445444443321 12222222111110111 1112334555
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHH-
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI--SPDIVTYNSLIHGFCREGRMRE- 288 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~- 288 (591)
.....+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+..+ --|..+|+.++-.-.......-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 5556666766666666666554444444455555566777777777777776521 1145566655533221111111
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 289 ARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368 (591)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (591)
|..++ .+. +--..|..++..-|.-.++.++|...|+...+.+.. ....|+.+..-|...++...|.+-++..++-.
T Consensus 319 A~~v~-~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 319 AQNVS-NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHH-Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111 111 222345556666667777777777777777765421 34556666666777777777777777777653
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSW 448 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (591)
+.|-..|-.|.++|.-.+-+.-|+-+|++..... +.|...|.+|..+|.+.++.++|+..|......| ..+...+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 3366777777777777777777777777776654 3467777777777777777777777777777655 235566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSR----GL-CVD-VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
+...|-+.++..+|...+.+.++. |. .|. ..+..-|...+.+.+++++|..+....... .+...--..|++-
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRe 549 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLRE 549 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 777777777777777777766642 22 221 112222444456677777777666655542 4444445555555
Q ss_pred HHHc
Q 048533 523 YWRA 526 (591)
Q Consensus 523 ~~~~ 526 (591)
+.+.
T Consensus 550 ir~~ 553 (559)
T KOG1155|consen 550 IRKI 553 (559)
T ss_pred HHHh
Confidence 5443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-14 Score=135.45 Aligned_cols=290 Identities=13% Similarity=0.005 Sum_probs=212.6
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
+..+|+..|.+...++++ +..+...++.+|+..+++++|..+|+.+.+..+.. -.+.++|+.
T Consensus 334 ~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r---------------v~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR---------------VKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------ccchhHHHH
Confidence 567899999997666666 66777789999999999999999999999876532 223345555
Q ss_pred HHHHHHhcCChHHHHHHH-HHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 136 LVIFYANLKMTQDGLQVF-DQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
.+-.+-+ +-++..+ +.+.+.++. ...+|..+.++|.-+++.+.|++.|++..+.++. ...+|+.+..-+....
T Consensus 396 ~LWHLq~----~v~Ls~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 396 TLWHLQD----EVALSYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHHh----hHHHHHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhH
Confidence 5443321 1223333 334444433 6778888888888888888888888888887544 6778888888888888
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+|.|...|+..+..+ +.+-.+|..+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+++
T Consensus 470 e~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 8888888888877653 234556667788888888888888888888876433 55666677777888888888888888
Q ss_pred HhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 295 DIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 295 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
+.....| |...--..+..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8876444 4555555667777788888888888888875 222456677777888888888888888888777644433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=139.82 Aligned_cols=260 Identities=15% Similarity=0.108 Sum_probs=91.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHN-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
.++..+.+.|++++|++++.+..... ...+...|..+.......++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886554443 2234555555666666677888888888888776554 55566666665 677
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
+++++|.+++....+. .++...+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888777766544 2455666777777777788888888777766532 234566677777777777888888888
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+++.....|+ ......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...+++..+.. +.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 8777765564 5666777777777777777777776665542 3344556666777777777777777777776642 33
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRML 400 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 400 (591)
|+.....+..++...|+.++|..+..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66667777777777777777777766554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-12 Score=110.81 Aligned_cols=291 Identities=13% Similarity=0.069 Sum_probs=208.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCh
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN---IHLYNVLIHACCKSSDV 216 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~ 216 (591)
|.-..+.++|+.+|-+|.+.++. +.++...|.+.+.+.|..++|++++..+.+..--+. ....-.|.+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 44467889999999999987655 777888899999999999999999999887521111 12344566778888999
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
|.|..+|..+...+ ..-..+...|+..|-...++++|+++-+++.+.+..+.. ..|..+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999988654 234567778899999999999999999988887654432 3455566666677888888888
Q ss_pred HHHhhcCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPNHV-TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+.+.....|+.+ +--.+.+.....|+++.|.+.++...+.+...-+.+...+..+|.+.|+.++....+..+.+...
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 888877666544 33445577888889999998888888876555566778888888888888888888888877633
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK---AKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 436 (591)
....-..+........-.+.|..++.+-... +|+...+..++..-.. .|...+...++.+|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333444444444444455565555555444 5777777777766543 3445556666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=137.45 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-hhcC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 275 SLIHGFCREGRMREARRLFRD-IKGA-TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE 351 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~-~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 351 (591)
.+...+.+.|++++|.++++. +... +| +...|..+.......++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456777778888888888854 3333 23 3445555666666778888888888888766432 44556666655 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG-LMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877766554 2455666777777778888888888887765432 234666777777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 510 (591)
+++.++.. +.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|..++++..+.+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887754 2246667777777778888887777777776653 3355667777788888888888888888877642 3
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|+.+...+.+++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3667777788888888888888877776654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-10 Score=109.81 Aligned_cols=464 Identities=14% Similarity=0.108 Sum_probs=313.5
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
...+.+-+...|.. +++.+.+++.+..++.+|. ..++....+-.+...|+-++|....+.....+
T Consensus 7 E~~lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d----------- 71 (700)
T KOG1156|consen 7 ENALFRRALKCYET-KQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRND----------- 71 (700)
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccC-----------
Confidence 34455555566654 8999999999999988887 45566667778889999999999998877643
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
..+..+|..++-.+....++++|++.|..++..+.. |...+.-+.-.=++.|+++.....-....+..+. .
T Consensus 72 -------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ 142 (700)
T KOG1156|consen 72 -------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-Q 142 (700)
T ss_pred -------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-h
Confidence 344567888888888899999999999999998765 7888877777777888998888888888776443 5
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCcccHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLI------ALYCKKGMHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
...|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..+.|.+.+..-... ..|-..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence 5678888888889999999999999887654 245655554433 3455678888888877665443 112222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHH-HHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 048533 273 -YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLID-GYCRA-NDLEEALRLREVMAAKGVYPGVVTYNSI-LRKL 348 (591)
Q Consensus 273 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~-~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l-l~~~ 348 (591)
--.-...+.+.+++++|..++..+....||...|..... ++.+- +..+....+|....+. .|....-..+ +...
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVL 298 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHh
Confidence 234456778899999999999999988888777665554 44333 3333333666666553 1211111111 1111
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CC----------CCCCHH-
Q 048533 349 CKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE--------AG----------LMLDQF- 409 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~----------~~~~~~- 409 (591)
.-..-.+...+++..+.+.|+++-. ..+...|-.....+ +.+++.. .| -+|...
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 1122234455667777888876533 33333332211111 2222211 11 134443
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 410 -TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSY-CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 410 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
++-.++..+-+.|+++.|...++..+.+ .|+. ..|..=.+.+...|+++.|..++++..+.+. +|...-..-..-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHH
Confidence 3445677888999999999999999875 4653 4455556778889999999999999998754 365555566677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--cC----HHHHHH--HHHHHHHcCChhHHHHHHHHHHH
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGIL--GD----SVIYTS--LAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+..+.++|.++.......|.. .+ .-.|-. -..+|.++|++..|.+=|..+-+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 77899999999999998877641 01 112322 25568888888888777666655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-13 Score=127.44 Aligned_cols=287 Identities=10% Similarity=0.014 Sum_probs=195.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP----NHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
+..+|+..|.++.+. +.-+.++...+..+|...+++++|.++|+.+....| +...|.+.+.-+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 556788888775544 222446667788888888888888888888876444 4566766665442211 1222
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 326 -REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 326 -~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
-+.+.+.. +-.+.+|-++..+|.-.++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22233221 335678888888888888888888888888775211 556677676677777888888888877765421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRAL 484 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 484 (591)
. +...|..+.-.|.+.++++.|+-.|+++++.+ +-+.+....++..+.+.|+.++|+.+++++...+.. |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 22334445667788888888888888887765 335566667777777888888888888888877655 55554555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
+..+...+++++|++.++++.+. ++-+...+..++..|.+.|+.+.|+.-|--|.+.+.+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 56667778888888888888875 333457777888888888888888888887777654433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=110.79 Aligned_cols=286 Identities=11% Similarity=0.036 Sum_probs=222.4
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|++.+|.+++.+..+.+.. ....|..-+.+.-+.|+.+.+-..+.++-+....++....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 59999999999998887765 45566667788888999999999999999875566777888888999999999999999
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI-------VTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
++++...+ +.+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99988875 557788899999999999999999999999998865443 4566677666666666776777877
Q ss_pred hhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 296 IKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 296 ~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
... .+.+...-..++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++...-++..+...+. .+.++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 764 4445666677788888899999999998888887665552 1222345566767666666666554 333557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7788888888888888888888876665 578888888888888888888888888776643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-11 Score=110.21 Aligned_cols=285 Identities=14% Similarity=0.093 Sum_probs=212.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.|++..|++...+-.+.+-.| ...|..-..+.-..|+.+.+-.++.+..+. .++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766655443 345555566666778888888888887764 34455566666777778888888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN-------VTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
.+.+.+.+.. ++........+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776533 5666777778888888888888888888777765444 3466666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048533 399 MLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDV 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (591)
..+. .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+. ...-.+.+-++.+.-++..++..+..+ -++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP-EDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC-CCh
Confidence 5443 3456777788888899999999999999999988776662 122345567788887887777776533 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..+..|+..|.+.+.|.+|...|+...+. .|+..+|..+.+++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88999999999999999999999988764 789999999999999999999999999888754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-09 Score=100.77 Aligned_cols=256 Identities=9% Similarity=0.023 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHhhc-CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 048533 284 GRMREARRLFRDIKG-ATPN------HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG---VVTYNSILRKLCKEGR 353 (591)
Q Consensus 284 g~~~~A~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 353 (591)
|+..+-...+.+... ..|- ...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.+..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 445555555555432 2221 23466777788888888888888888776543211 2234444444456667
Q ss_pred HHHHHHHHHHHHhCC-----------CCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 354 IRDANRLLNEMNEKK-----------IAP------DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIH 416 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 416 (591)
++.|+++.+.....- .++ +...|...++..-..|-++....+|+++.+..+. ++.......-
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAm 519 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAM 519 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 777777777654321 111 2234555666666677777888888888776543 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 048533 417 GFCKAKEMDIAKELLFGMLDAGFSPSY-CSYSWLVDGYCN---KNNEEALLKLLDEFVSRGLCVDVSVYRALIRR--FCK 490 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 490 (591)
.+-.+.-++++.+++++-+..-..|+. .+|+..+.-+.+ ...++.|..+|+++++ +++|...-+-.|+.+ --+
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 344555667777777665553323442 345554444332 2357778888888877 555443322222221 123
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.|-...|+.+++++... +++.. ..|+..+.--...=-+..-..+|+++++.
T Consensus 599 ~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred hhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 46667777777776543 34332 34554444333222233344555555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-10 Score=105.22 Aligned_cols=427 Identities=16% Similarity=0.155 Sum_probs=293.4
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+...++|.....+.+.+.+..+ ...+.+...+-.+...|+-++|........+.+++ +...
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~------------------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vC 77 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFP------------------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVC 77 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCC------------------ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchh
Confidence 4456788888888888877543 33344444555577789999999999999998877 8889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
|+.+.-.+...+++++|++.|..+.+.+.. |...+..+.-.-++.++++.....-....+.. +.....|..++.++.-
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998766 78888888777888899988888777776652 3356678889999999
Q ss_pred cCChhHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhcCCH
Q 048533 248 KGMHYEALAVQDRMEREG-ISPDIVTYNSLI------HGFCREGRMREARRLFRDIKGATPNHVT-YTTLIDGYCRANDL 319 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~ 319 (591)
.|++..|..+++...+.. -.|+...+.... ......|..++|.+.+........|-.. -..-...+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999999998764 246666554332 3345678889999988877653344333 34566788899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHHHHhCCCCCChHHHHHH-HHHHHHcCCHHHHHHHH
Q 048533 320 EEALRLREVMAAKGVYPGVVTYNSILR-KLCKEGRIRDAN-RLLNEMNEKKIAPDNVTCNTL-INAYCKIGDTASAMKVK 396 (591)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~ 396 (591)
++|..++..+... .||...|...+. ++.+..+..++. .+|....+. . |....-..+ ++......-.+..-.++
T Consensus 236 EeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 236 EEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHH
Confidence 9999999999987 466666655544 443444444444 666655543 1 111111111 11111112233445566
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCCHH
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGML----DAG----------FSPSYCSY--SWLVDGYCNKNNEE 460 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~ 460 (591)
....+.|+++ ++..+...|-.-...+-..++...+. ..| -+|....| -.+...+-..|+++
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 6667777653 33333333322222221112221111 111 14555444 44667788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
.|..+++.++..-+. -+..|..-.+.+...|++++|..++++..+.+ .||..+-..-+....++++.++|.++.....
T Consensus 389 ~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 999999999976221 24455566688899999999999999999874 3455555578888899999999999999999
Q ss_pred HCCC
Q 048533 541 RRRL 544 (591)
Q Consensus 541 ~~~~ 544 (591)
+.|.
T Consensus 467 r~~~ 470 (700)
T KOG1156|consen 467 REGF 470 (700)
T ss_pred hccc
Confidence 9875
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-11 Score=113.42 Aligned_cols=468 Identities=11% Similarity=0.015 Sum_probs=276.2
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH--cCCCCchHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL--RDFLSTPSV 115 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 115 (591)
-++..+..+. +.+.-.++++.|......-.- ...+.......+..+.+..++++|..++..... ..+.-++..
T Consensus 47 ~dp~d~~~~a-q~l~~~~~y~ra~~lit~~~l----e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 47 NDPADIYWLA-QVLYLGRQYERAAHLITTYKL----EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred CChHHHHHHH-HHHHhhhHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 3444444443 333334778888777765421 123677777889999999999999999873311 111001000
Q ss_pred HHHHHhhcCC-----CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 116 LNALVKIHDD-----PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 116 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
-...+..... ......+...-...|....+.++|...|.+.+..++. ..+.+..++.+..-. +.+.++.
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt-----~~Ee~~l 195 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLT-----AQEEFEL 195 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcc-----hhHHHHH
Confidence 0000000000 0111223333445677788888999999888877655 555555555544322 2233333
Q ss_pred HHHCCCC----CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVV----ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
+...... .++.....+.....-...-+.....-....-.+...+.........-+...+++.+..++.+.+.+..
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d- 274 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD- 274 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-
Confidence 3322111 12222222222111000000000000001111223345555556666777788888888888877652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL 345 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 345 (591)
++....+..-|.++...|+..+-..+=.++....|+ ..+|-++.--|...|+..+|.+.|.+....+.. =...|..+.
T Consensus 275 pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fg 353 (611)
T KOG1173|consen 275 PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFG 353 (611)
T ss_pred CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHh
Confidence 344555555566777777766666666666655554 667777777777778888888888777654322 134577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 346 RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMD 425 (591)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 425 (591)
..|.-.|..++|...+...-+. ++-...-+-.+.--|.+.++...|.++|.+..... +.|+...+.+.......+.+.
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhH
Confidence 7777778888888777766543 11111223334455677788888888888777653 346777777777777778888
Q ss_pred HHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 426 IAKELLFGMLDA----G--FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 426 ~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
+|..+|+..+.. + ......+++.|..+|.+.+.+++|+..+++.+...+. +..++.++.-.|...|+++.|+.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH
Confidence 888888776621 1 0113446777888888888888888888888877544 78888888888888888888888
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHH
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAY 523 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~ 523 (591)
.|.+... +.|+..+...++..+
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHHHH
Confidence 8888775 567776666655543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-10 Score=107.78 Aligned_cols=468 Identities=10% Similarity=0.049 Sum_probs=302.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.++.-|+-+-++....- . ++.-.+-+++++.-.|++.+|..++..-.-. ..+..+..
T Consensus 30 ~~y~~a~f~adkV~~l~-~---dp~d~~~~aq~l~~~~~y~ra~~lit~~~le-------------------~~d~~cry 86 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLT-N---DPADIYWLAQVLYLGRQYERAAHLITTYKLE-------------------KRDIACRY 86 (611)
T ss_pred HhhhHHHHHHHHHHhcc-C---ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh-------------------hhhHHHHH
Confidence 45565555555543321 2 3444455788888999999998877553211 22334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----hhCCCcc---------C-----------HHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQM----RVHNLMP---------H-----------LHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~---------~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..+..+.+..++++|..++... ......| | ...+-.-...|....+.++|...|.+
T Consensus 87 L~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~ 166 (611)
T KOG1173|consen 87 LAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKE 166 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHH
Confidence 6677788888999998888722 1110000 0 00111112234445566677777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC----CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV----RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
.... |...+.++...-.. ..-.+.+.++.+...+. ..+......+.....-...-+.....-.+-.-.+.
T Consensus 167 Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 167 ALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGL 240 (611)
T ss_pred HHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhh
Confidence 6654 33333332221111 01112222222222110 01111111111111000000111111111111123
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL 345 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 345 (591)
.-+........+-+...+++.+..++.+.+.+ .++....+..-|.++...|+..+-+.+=..+.+. .+-.+.+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 34555666667778888999999999999876 4556777777788999999988888888888876 344667888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 346 RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMD 425 (591)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 425 (591)
-.|...|+..+|.+.|.+....... -...|-.+...+.-.|..++|...+..+.+.- +-...-+..+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888899999999999988765322 33579999999999999999999998887652 112223334555688899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GLC----VDVSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
.|.+.|.+..... +-|+..++-+.......+.+.+|..+|+..... ... .-..+++.|+.+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999998754 456778888888888889999999999988732 111 134568999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 500 LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
.+++.... .+-+..++.++.-.|...|+++.|+..|.+.+. +.|+-.+-..++..+
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999986 355889999999999999999999999999998 456665544444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-12 Score=127.30 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---------CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK---------NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
++.++|+..|+.+.+..|+ ...+|..++.++.. .+++++|...++++.+.+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld----------------- 334 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD----------------- 334 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----------------
Confidence 3456788888888877776 55566666554432 233566666666666544
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
|.+..++..++.++...|++++|+..|+++++.++. +..++..+..++...|++++|...+++..+.++. +...+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 334455556666666667777777777777666544 5556666666666677777777777776666544 2222222
Q ss_pred HHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREG 284 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 284 (591)
++..+...|++++|...+++......+.+...+..+..++...|++++|...+.++... .|+ ....+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 33344455666666666666554421223334555566666666666666666665443 222 223334444445444
Q ss_pred CHHHHHHHHHHhh
Q 048533 285 RMREARRLFRDIK 297 (591)
Q Consensus 285 ~~~~A~~~~~~~~ 297 (591)
++|...++.+.
T Consensus 490 --~~a~~~l~~ll 500 (553)
T PRK12370 490 --ERALPTIREFL 500 (553)
T ss_pred --HHHHHHHHHHH
Confidence 35555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-08 Score=95.11 Aligned_cols=408 Identities=13% Similarity=0.111 Sum_probs=259.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhC-CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVH-NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
.++..-......+|++..-...|++++.. .+......|...+......+-++.+..+|++.++. ++..-.-.+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777778888899999999999887765 33334457888888888888888999999998875 33446667888
Q ss_pred HHccCChhhHHHHHHHHhhCC------CCcCcccHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCH--HHHHHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKD------VRADLFTYNTLIALYCKKGMHYE---ALAVQDRMEREGISPDI--VTYNSLIH 278 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p~~--~~~~~l~~ 278 (591)
+++.+++++|.+.+..+...+ .+.+-..|..+-....++-+.-. ...++..+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888999999888888775432 13344456665555554433222 22333333322 3343 46788888
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHHCCC--
Q 048533 279 GFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA----------------N------DLEEALRLREVMAAKGV-- 334 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~~~~~~~-- 334 (591)
-|.+.|.+++|..+|++......++.-|+.+.+.|..- | +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 89999999999999888765333333333333333321 1 12222333444333210
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048533 335 ---------YPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP------DNVTCNTLINAYCKIGDTASAMKVKNRM 399 (591)
Q Consensus 335 ---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 399 (591)
+.+...|..-+. ...|+..+-...|.+..+. +.| -...|..+...|-..|+.+.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 112222322222 2345666777777777654 222 2356888899999999999999999998
Q ss_pred HHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCC------CHHHHHHHHHHHHhcCCH
Q 048533 400 LEAGLMLD---QFTYKALIHGFCKAKEMDIAKELLFGMLDA-----------GFSP------SYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 400 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~ 459 (591)
.+...+.- ..+|..-...-.+..+++.|..+++..... +.++ +..+|+..++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87654322 234555555556778899999988877632 1111 233455566666677889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHH---cCChhHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWR---AGEPKACSDI 535 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~ 535 (591)
+....+++.+++..+. ++.+.....-.+-.+.-++++.++|++-+..=..|+. .+|+..+.-+.+ .-..+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999887665 4444444444455666788888888877664334554 677776666554 2357889999
Q ss_pred HHHHHHCCCCCCHH
Q 048533 536 LDDMYRRRLMITLK 549 (591)
Q Consensus 536 ~~~~~~~~~~~~~~ 549 (591)
|+++++ |.+|+..
T Consensus 573 FEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 573 FEQALD-GCPPEHA 585 (835)
T ss_pred HHHHHh-cCCHHHH
Confidence 999988 5655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-09 Score=105.09 Aligned_cols=299 Identities=16% Similarity=0.130 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+...-...++...|++++|++.++.....- .+...++...+..+.+.|+.++|..+|..+++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I------------------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI------------------LDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455677889999999999998765432 33445667788899999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-hhHHHHHHHHhhCCCC
Q 048533 159 HNLMPHLHACTVLLNSLAKDR-----LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV-DKVEKLLCEMEFKDVR 232 (591)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~ 232 (591)
.++. |..-|..+..++.-.. +.+...++|+.+.+.-+. ......+.-.+.....+ ..+..++..+..+|+|
T Consensus 67 rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 67 RNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred HCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 9875 7777777777773332 567778899988776433 22222222222222233 3456677778888864
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRMERE----G----------ISPDI--VTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.+|+.+-..|......+-..+++..+... + -+|+. +++..+...|...|++++|+++++..
T Consensus 144 ---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 144 ---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred ---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666666666555555555666655432 1 12343 35567788899999999999999999
Q ss_pred hcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH-
Q 048533 297 KGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV- 374 (591)
Q Consensus 297 ~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 374 (591)
....|+ +..|..-.+.+-+.|++++|.+.++.....+.. |...-+.....+.+.|++++|.+++......+..|...
T Consensus 221 I~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 221 IEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 988887 678888899999999999999999999987643 77777788888999999999999999988776433221
Q ss_pred -----HH--HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 375 -----TC--NTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 375 -----~~--~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
.| .....+|.+.|++..|++.|..+.+.
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12 44567899999999998888777553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-10 Score=100.84 Aligned_cols=438 Identities=13% Similarity=0.062 Sum_probs=200.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCchHHHHHHHh-----------h
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF-LSTPSVLNALVK-----------I 122 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-----------~ 122 (591)
.++..|+.+++........ ....+-.-++..+.+.|++++|...++.+..... +....+..++.. .
T Consensus 36 rDytGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677777777765532211 1123333466777777777777777777655332 222222222221 2
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
....+.++-.-..++..-.+.++-++-..+-+.+.. ..+.-.+|.....-.-.+++|+++|.++...+ |+-..
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~a 186 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIA 186 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhh
Confidence 233444444444455555555554444443333322 12233344444444455777778877777643 23333
Q ss_pred HHHHH-HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 203 YNVLI-HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFC 281 (591)
Q Consensus 203 ~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 281 (591)
.|..+ -+|.+..-++-+.++++-..+. .+.+..+.|..+....+.=+-..|.+-...+..++-.. |- .+.-.+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~ 260 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLC 260 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHH
Confidence 44333 3455666667777777666554 23344445544444444333333333333333332110 11 111112
Q ss_pred hc-----CCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhc
Q 048533 282 RE-----GRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK-----LCKE 351 (591)
Q Consensus 282 ~~-----g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 351 (591)
+. ..-+.|++++-.+.+.-|. +--.++-.|.+.+++++|..+.+.+.- ..|-......+..+ ....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 21 2334555555444432222 222333345556666666655544432 12322222222222 2223
Q ss_pred CCHHHHHHHHHHHHhCCCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNV-TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
....-|.+.|+..-+.+..-|.. .-.++..++.-..++++.+.+++.+..--.. |...-..+.++++..|++.+|+++
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHH
Confidence 33445555555444433222211 1223333333444555665555555443222 222223355666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA-LIRRFCKKEKVDYAQRLFNLMQGNGI 509 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~ 509 (591)
|-.+....++.+..-.+.+.++|...+.++.|..++-++ +.+.+..+... +.+.|.+.+.+--|.+.|+.+...
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l-- 490 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL-- 490 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--
Confidence 655544333322222344455666666666665554332 22223333222 233455666666666666665543
Q ss_pred CcCHHHHH
Q 048533 510 LGDSVIYT 517 (591)
Q Consensus 510 ~p~~~~~~ 517 (591)
.|++.-|.
T Consensus 491 DP~pEnWe 498 (557)
T KOG3785|consen 491 DPTPENWE 498 (557)
T ss_pred CCCccccC
Confidence 45555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-09 Score=96.01 Aligned_cols=451 Identities=13% Similarity=0.095 Sum_probs=252.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+....++.-|+.+++.-...+- +....+-.|++-+|...|++++|+..|..+...+ .|+...
T Consensus 32 fls~rDytGAislLefk~~~~~-----------------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-----------------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-----------------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 4456788888888887664321 2223566788999999999999999999988754 456777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
+..|.-++.-.|.+.+|..+-....+ +.-.-..++....+.|+-++-..+.+.+... ..---+|......
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 77777777778999999888776643 3444555667777888888877777666532 2233445666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNS-LIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.-.+++|+++|.+.... .|+-...|. +.-+|.+..-++-+.++++.....-|| +.+.|..+....+.-.-..|..-
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 67889999999999876 455555554 345667788888888888887665555 44455444433332221222222
Q ss_pred HHHHHHCCC--------------------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 326 REVMAAKGV--------------------------YP-----GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 326 ~~~~~~~~~--------------------------~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
.+.+.+.+- -| -+..-..++-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 222222210 01 0112223334455666666666666554321 12111
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 375 TCNTLINAYCKIGD-------TASAMKVKNRMLEAGLMLDQ-FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSY 446 (591)
Q Consensus 375 ~~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 446 (591)
....+ .+...|+ ..-|...|...-..+...|. .--.++...+.-..++++....++.+...-...|. ..
T Consensus 320 ilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~-Fn 396 (557)
T KOG3785|consen 320 ILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD-FN 396 (557)
T ss_pred HHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh
Confidence 11111 1222221 22333333333333322221 11233444444455566666666655543222222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHH
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVY-RALIRRFCKKEKVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYW 524 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 524 (591)
-.+.++++..|++.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|..++-++.. +.+. .....+...|.
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 33566677777777777777666554444 34444 3445566677777766655544332 2222 33445566677
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHHH-hcCCCChHHHHH
Q 048533 525 RAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHVV-DRGLMSKHIFKE 585 (591)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 585 (591)
+.+++=-|.+.|+.+... .|++..|. ++.|--...|+..+- ..+.++.+..++
T Consensus 473 k~~eFyyaaKAFd~lE~l--DP~pEnWe------GKRGACaG~f~~l~~~~~~~~p~~~~rE 526 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEIL--DPTPENWE------GKRGACAGLFRQLANHKTDPIPISQMRE 526 (557)
T ss_pred HHHHHHHHHHhhhHHHcc--CCCccccC------CccchHHHHHHHHHcCCCCCCchhHHHH
Confidence 777776677777666663 35555552 344444444444442 233334444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-08 Score=89.73 Aligned_cols=406 Identities=11% Similarity=0.023 Sum_probs=270.4
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC-C-hhHHHHHHHHHHHCCCCCCHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR-L-TDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~-~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.+.+.....+.+|...++-+.|+..+.+.......|- .+.++..+.+.| + .+.+...-+-+.+. +...
T Consensus 93 ~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~---inlMla~l~~~g~r~~~~vl~ykevvrec-----p~aL 164 (564)
T KOG1174|consen 93 EFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPR---INLMLARLQHHGSRHKEAVLAYKEVIREC-----PMAL 164 (564)
T ss_pred CcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchh---HHHHHHHHHhccccccHHHHhhhHHHHhc-----chHH
Confidence 355677788899999999999999999887765533332 333333333322 2 22222222222221 1111
Q ss_pred HHHHHHHHccC--ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 048533 204 NVLIHACCKSS--DVDKVEKLLCEMEFKDVRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREG-ISPDIVTYNSLIH 278 (591)
Q Consensus 204 ~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~ 278 (591)
. .|.+..+.+ ..+.+-. .|....++|...+....+.+++ ..++...+...+--+.... ++-|+.....+..
T Consensus 165 ~-~i~~ll~l~v~g~e~~S~---~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak 240 (564)
T KOG1174|consen 165 Q-VIEALLELGVNGNEINSL---VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGK 240 (564)
T ss_pred H-HHHHHHHHhhcchhhhhh---hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhh
Confidence 1 111222111 1111111 1222223444444444454444 3455555555554444332 4556778889999
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPNH-VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 357 (591)
.+...|+.++|...|++.....|+. .......-.+.+.|+.+....+...+.... .-....|..-.......+++..|
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence 9999999999999999998767753 334444555677888888888877776542 12333444444555677889999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 358 NRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+.+-++.++.+.. +...+-.-...+...|++++|.-.|+...... +.+...|..|+.+|...|++.+|..+-+...+.
T Consensus 320 L~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 320 LNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 9999988876322 44555555677888999999999999987763 347899999999999999999999888777653
Q ss_pred CCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHH
Q 048533 438 GFSPSYCSYSWLV-DGYC-NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVI 515 (591)
Q Consensus 438 ~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 515 (591)
++.+..++..+. ..+. ...--++|.+++++..+.++. -....+.+...+...|..+.++.+++..... .||...
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L 473 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNL 473 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHH
Confidence 245566666553 3333 334468899999998876433 3456777888899999999999999998874 779999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 516 YTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIY 551 (591)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 551 (591)
.+.|.+.+...+.+++|...|..+++.++. +..+.
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 999999999999999999999999987643 33343
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-11 Score=115.73 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=158.4
Q ss_pred HHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
++-.+...|+.|+..+|..+|..|+..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4566777889999999999999999999999888 8888887777778888999998888888887775
Q ss_pred CcCcccHHHHHHHHHhcCChhH---HHHHHHHHHH----CCCC-CCHHHH-------------HHHHHHHHhcCCHHHHH
Q 048533 232 RADLFTYNTLIALYCKKGMHYE---ALAVQDRMER----EGIS-PDIVTY-------------NSLIHGFCREGRMREAR 290 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~----~~~~-p~~~~~-------------~~l~~~~~~~g~~~~A~ 290 (591)
.|...+|..|..+|...||... +.+.+..+.. .|+- |....+ .+.+......|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988655 2221211111 1111 001110 12233344455566666
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 291 RLFRDIKGATPNHVTYTTLIDGYCR-ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI 369 (591)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (591)
+++..++-...+. .+...++-+.. ...+++-..+...... .|++.+|..++.+-...|+.+.|..++.+|.+.|+
T Consensus 160 kll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 6665554311111 11112332222 2223333333333332 46677777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 370 APDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 370 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+.+.+-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7666655555544 56666666777777777777777777666666655444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-11 Score=107.41 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...++++...+ |.+...+..++..|...|++++|++.+++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------PDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555556666666666666665554432 2222344445555555666666666666555
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+.++. +...+..+...+...|++++|.+.++...+.... .....+..+...+...|++++|...+++..... +.+..
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 170 (234)
T TIGR02521 93 TLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPE 170 (234)
T ss_pred hhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChH
Confidence 54433 3444555555555556666666655555543211 122334444455555555555555555555432 22334
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555555555555443 1223344444445555555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=117.98 Aligned_cols=250 Identities=11% Similarity=0.024 Sum_probs=173.1
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHH---------hcCChHHHHHHHHHHhhCCCc
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYA---------NLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+.+++|+.+|+++.+.+|. +...+..++.+|. ..+++++|...++++++.++.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~------------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN------------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc------------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 4567899999998886543 3344444444443 234578999999999998776
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 242 (591)
+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+.+. .+...+..++
T Consensus 337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~ 413 (553)
T PRK12370 337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKL 413 (553)
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence 7888888888899999999999999999988755 667788888899999999999999999888742 2333344455
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHH
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEE 321 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 321 (591)
..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++....|+ ....+.+...|...| ++
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HH
Confidence 556778899999999988876532224556777888888899999999999888765555 334455556667666 47
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 322 ALRLREVMAAKG-VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 322 a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 492 a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 492 ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777666665431 11221222 22223344555555444 666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=108.26 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=157.5
Q ss_pred HHHHH--HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 78 LQSHW--TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 78 ~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
.+-|| .+++.|.+.|.+.+|...|....+.- ..+++|..|..+|.+-+++..|+.++.+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-------------------~~~dTfllLskvY~ridQP~~AL~~~~~ 281 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-------------------PHPDTFLLLSKVYQRIDQPERALLVIGE 281 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-------------------CchhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 44444 47777777777777777777666542 2335566666777777777777777777
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
-++.-+. ++.......+.+-..++.+.|.++|+...+.... ++.....+...|.-.++++-|+.+|+++...|+. +.
T Consensus 282 gld~fP~-~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-sp 358 (478)
T KOG1129|consen 282 GLDSFPF-DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SP 358 (478)
T ss_pred hhhcCCc-hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-Ch
Confidence 6665332 4444556667777777777777777777776543 5556556666667777777777777777777753 66
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHH
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDG 312 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~ 312 (591)
..|+.+.-+|.-.++++-++..|++....--.|+ ..+|..+.......|++.-|.+.|+-.....++ ..+++.+.-.
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 7777777777777777777777777665433333 345666777777777777777777776654443 5667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048533 313 YCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~ 332 (591)
-.+.|++++|..++......
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 77777777777777776654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-08 Score=95.47 Aligned_cols=448 Identities=13% Similarity=0.102 Sum_probs=261.9
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
+.+.+.+++++|+..-...+...|+ +..+...-+.++.+.++|++|..+.+.-.... .....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~------------- 81 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF------------- 81 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh-------------
Confidence 3445678999999999999887665 77777777778999999999996665433211 00000
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+.--+-+..+.++.++|+..++-..+. +..+...-...+.+.+++++|..+|+.+.+.+.+ +. ..-++
T Consensus 82 ----~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~---d~~~r 149 (652)
T KOG2376|consen 82 ----FFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQ---DEERR 149 (652)
T ss_pred ----hHHHHHHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hH---HHHHH
Confidence 011122356889999999999833322 4446777778899999999999999999887543 22 22221
Q ss_pred H-HHccCChhhHHHHHHHHhhCCCCcCcccHH---HHHHHHHhcCChhHHHHHHHHHHHCC--------CC-----CCH-
Q 048533 209 A-CCKSSDVDKVEKLLCEMEFKDVRADLFTYN---TLIALYCKKGMHYEALAVQDRMEREG--------IS-----PDI- 270 (591)
Q Consensus 209 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~--------~~-----p~~- 270 (591)
+ +...+..-.+. +.+..... | ..+|. .....++..|++.+|+++++...+.+ .. -..
T Consensus 150 ~nl~a~~a~l~~~-~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 150 ANLLAVAAALQVQ-LLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHhhhHH-HHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 1 11111111111 23333322 1 23443 34456778999999999999883211 11 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChh----hHHHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHV----TYTTLIDGYCRANDLE-EALRLREVMAAKGV---------- 334 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~---------- 334 (591)
..-..+...+-..|+.++|..++..+.. ..+|.. .-|.++..-....-++ .++..++.......
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1223455667788999999999988875 333432 2233332221111112 12222222211100
Q ss_pred CCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 335 YPGVVTYN-SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK--IGDTASAMKVKNRMLEAGLMLDQFTY 411 (591)
Q Consensus 335 ~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (591)
.-.....| .++..| .+..+.+.++...... ..|. ..+..++..+.+ ...+.++.+++....+........+.
T Consensus 305 qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~ 379 (652)
T KOG2376|consen 305 QKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVL 379 (652)
T ss_pred HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHH
Confidence 00111112 222222 2333444444333322 1222 344445444332 22467777777777666433335566
Q ss_pred HHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----
Q 048533 412 KALIHGFCKAKEMDIAKELLF--------GMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GLCVD---- 477 (591)
Q Consensus 412 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---- 477 (591)
..++......|+++.|.+++. .+.+.+..|- +...++..+.+.++.+.|..++.++++. .-.+.
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 667777889999999999999 5555554444 5566777788888777777777776642 01112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
..++..+...-.+.|+-++|..+++++.+. -++|..+...++.+|++. +++.|..+-.++.
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 223334444445779999999999999986 366889999999999886 5777777655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-08 Score=97.56 Aligned_cols=406 Identities=11% Similarity=-0.008 Sum_probs=238.4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN-IHLYNVL 206 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 206 (591)
.++.+|..+.-+....|++..+.+.|++....-+. ..+.|+.+...+...|.-..|..+++........|+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35567777777788888888888888887776554 667788888888888888888888877665543333 3333333
Q ss_pred HHHHH-ccCChhhHHHHHHHHhhC--CC--CcCcccHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCH
Q 048533 207 IHACC-KSSDVDKVEKLLCEMEFK--DV--RADLFTYNTLIALYCKK-----------GMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 207 l~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
-..|. +.|..+++.++..+.... +. ......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 33333 346677777776666551 11 12233444444444321 1234567777777665432 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL 348 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 348 (591)
.+...+.--|+-.++++.|....++.... ..+...|..++-.+.-.+++.+|+.+.+.....- .-|......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 33333344456677888888888777653 3456777777777777888888888877665531 00111111111111
Q ss_pred HhcCCHHHHHHHHHHHHhC---------------------C-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048533 349 CKEGRIRDANRLLNEMNEK---------------------K-------IAPDNVTCNTLINAYCKIGDTASAMKVKNRML 400 (591)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 400 (591)
...++.+++......++.. | ..-...++..+.......+........ +.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cC
Confidence 2234444444433332210 0 000111111111111100000000000 11
Q ss_pred HCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 401 EAGL--MLD------QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 401 ~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.... .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|..+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1111 122 1234445556677788888887777776643 345666777777777888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 473 GLCVDVSVYRALIRRFCKKEKVDYAQR--LFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++. ++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.+.|.+.|....+-
T Consensus 714 dP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 544 56677888888888888777777 888888764 336688888888888888888888888888774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-11 Score=104.10 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=107.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC
Q 048533 309 LIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 388 (591)
+..+|.+.|.+.+|.+.++...+. .|-+.||..+-+.|.+..+...|+.++.+-++. .+.|+.....+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 344444444444444444444433 233344444444444445555555544444443 22233333334444444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
.++|.++|+...+.. +.+++....+...|.-.++++.|...+++++..|+ -++..|..+.-+|.-.+++|-++.-|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555544432 22344444444444445555555555555555543 2444555555555555555555555555
Q ss_pred HHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 469 FVSRGLCV--DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 469 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+...-..| -..+|..+.......|++..|.+.|+.....+. -+...++.|.-.-.+.|+.++|..++..+..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 54432211 233455555555555555555555555554421 1334555555555555555555555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-09 Score=105.49 Aligned_cols=292 Identities=13% Similarity=0.097 Sum_probs=161.4
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh---
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY-NSLIHGFCR--- 282 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~--- 282 (591)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+...| ..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34566778888888888775544 22234445566777778888888888888888773 444444 444444311
Q ss_pred --cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 283 --EGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLE-EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 283 --~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
..+.+....+++++...-|...+...+.-.+..-..+. .+..++..+...|+++ +|+.+-..|....+..-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 12466667777777665555554444433333322333 3334556666666432 34455444554444444444
Q ss_pred HHHHHHhC----C----------CCCChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 360 LLNEMNEK----K----------IAPDNV--TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 360 ~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
++...... + -+|+.. ++..+...|...|+.++|+++.+..+.+.+ ..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCC
Confidence 44444321 0 122332 224445556666666666666666666531 125566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVS------VY--RALIRRFCKKEKVD 495 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 495 (591)
+.+|.+.++.....+ .-|..+-+..+..+.+.|++++|.+++....+.+..|... +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 666666666666554 2345555555666666666666666666665554322211 11 33345556666666
Q ss_pred HHHHHHHHHHh
Q 048533 496 YAQRLFNLMQG 506 (591)
Q Consensus 496 ~a~~~~~~~~~ 506 (591)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 66666655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-10 Score=100.68 Aligned_cols=200 Identities=11% Similarity=-0.001 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 338 VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655542 2234555566666666666666666666666553 2244555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDAGF-SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
+...|++++|...+.+...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777766665321 122344555666677777777777777777765432 45566677777777777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 233455666666777777777777777666654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-10 Score=110.14 Aligned_cols=274 Identities=15% Similarity=0.162 Sum_probs=189.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 186 KVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|..+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 8888888888888889999999988888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 048533 266 ISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA-KGVYPGVVTYNSI 344 (591)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l 344 (591)
.|.+.||..|..+|...|+... |+...+ -...+...+...|.-.....++..+.- .+..||..+ .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 5788999999999999999766 333221 112223334445544444444433221 123344332 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD-TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
+....-.|.++.+.+++..+...... .+... +++-+..... +++-..+-+.... .|++.+|.+++.+-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 33344456667777766554332111 11111 2333333222 2332222222222 5889999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK 493 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 493 (591)
.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999998888877777655 78888888899999999999999999888887777544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-10 Score=93.07 Aligned_cols=195 Identities=15% Similarity=0.004 Sum_probs=155.3
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|+.-|...|++..|.+-+++++++.|+ +..+|..++..|.+.|..+.|.+.|+++....
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------------------ 99 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLA------------------ 99 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------------------
Confidence 344455679999999999999998887 78888899999999999999999999988754
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
|.+-++++.....+|.+|++++|...|+++.....-+ ...+|..+.-+..+.|+++.|...|++..+.... .......
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~ 178 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLE 178 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHH
Confidence 5667788888888999999999999999988763222 2447777777888888888888888888887655 4556667
Q ss_pred HHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+.+...+.|++-.|..+++.....+. ++..+.-..|..-...|+.+.+-+.=..+.+.
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78888888888888888888877764 77777777788888888887777766666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-07 Score=89.26 Aligned_cols=406 Identities=13% Similarity=0.086 Sum_probs=224.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
-+..+...|++++|++..++++..++. +..++..-+-++.+.+.++.|+.+.+.-... ..+...+---..+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 345577889999999999999988754 6778888888899999999998665543221 1111111122334457899
Q ss_pred hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 216 VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP-DIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.++|...++... +.|..+...-...+.+.|++++|+++|+.+.+++..- +...-..++.. +-.-.+. +.+
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q 165 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ 165 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence 999999888332 2234466677788889999999999999997664321 11111111111 0001111 122
Q ss_pred HhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHHhcCCHHHHHH
Q 048533 295 DIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKG-------VYP------GVV-TYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 295 ~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~ 359 (591)
....... +...+-.....+...|++.+|+++++...+.+ -.- ... .-..+...+-..|+..+|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 2221111 11111222233344555555555555442110 000 000 01112222334455555555
Q ss_pred HHHHHHhCCCCCChHHH---------------------------------------------------HHHHHHHHHcCC
Q 048533 360 LLNEMNEKKIAPDNVTC---------------------------------------------------NTLINAYCKIGD 388 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~---------------------------------------------------~~li~~~~~~~~ 388 (591)
++...++.... |.... +.++..| .+.
T Consensus 246 iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 246 IYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhh
Confidence 55555444221 22110 1111111 122
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFC--KAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
.+.+.++-.... +..| ...+..++.... +......+..++....+....-...+.-.++......|+++.|++++
T Consensus 323 ~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222222211111 1112 233444444332 22346777777777766543333456666778888999999999999
Q ss_pred H--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHHcCChhHH
Q 048533 467 D--------EFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN------GILGDSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 467 ~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~A 532 (591)
. .+.+.+. .+.+...++..+.+.++.+.|..++...... +-.--..++.-++..-.+.|+-++|
T Consensus 400 ~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 9 5555444 3455666777788888877777777776641 1111123455555556678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 533 SDILDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
..+++++.+.. ++|..+...++-+|++.+
T Consensus 478 ~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 478 SSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 99999999964 358888999999998864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-08 Score=99.75 Aligned_cols=406 Identities=16% Similarity=0.058 Sum_probs=248.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..+|-.+.-++.+.|++..+.+.||+.....+ .....|+.+...|...|.-..|+.+++..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~------------------~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF------------------GEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------------------hhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 566666777788888888888888888765321 12345666777777777777788877777
Q ss_pred hhCCCccC-HHhHHHHHHHHHh-cCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHcc-----------CChhhH
Q 048533 157 RVHNLMPH-LHACTVLLNSLAK-DRLTDMVWKVYKKMVQL--GV--VANIHLYNVLIHACCKS-----------SDVDKV 219 (591)
Q Consensus 157 ~~~~~~~~-~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a 219 (591)
......|+ ...+......|.+ .+.+++++..-.++... +. ......|..+.-+|... -...++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 66664443 3333333344433 45555555555554441 10 11233333333333211 123456
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG- 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 298 (591)
.+.+++..+.+ +.|..+...+..-|+..++.+.|.+...+..+-+-.-+...|..+.-.+...+++.+|+.+.+....
T Consensus 464 lqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 67777776664 2344444445555667777888888777777765555677777777777777778888777776653
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHh
Q 048533 299 ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK---------------------G-------VYPGVVTYNSILRKLCK 350 (591)
Q Consensus 299 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~p~~~~~~~ll~~~~~ 350 (591)
...|......-+..-..-++.++++.....+... | ..-...++..+..-...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2222222222222333345555555443333221 0 00011122222211111
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 351 EGRIRDANRLLNEMNEKKIAP--D------NVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.+ ..+..-. .+......| + ...|......+.+.+..++|...+.+..... +.....|......+...|
T Consensus 623 ~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 623 QL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 00 0000000 011111112 2 1245566677888899999988888877653 345677777778888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLK--LLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
.+++|.+.|......+ +-++.+..++...+.+.|+...|.. ++..+.+.++. ++..|..++..+.+.|+.+.|.+.
T Consensus 699 ~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999998754 3346788899999999998888888 99999998765 899999999999999999999999
Q ss_pred HHHHHhC
Q 048533 501 FNLMQGN 507 (591)
Q Consensus 501 ~~~~~~~ 507 (591)
|+...+.
T Consensus 777 f~aa~qL 783 (799)
T KOG4162|consen 777 FQAALQL 783 (799)
T ss_pred HHHHHhh
Confidence 9988864
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-08 Score=93.05 Aligned_cols=434 Identities=10% Similarity=-0.017 Sum_probs=255.5
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.....|+++.|+..|..++...|. +...|.+-..+|+..|+|++|.+--.+..+.+ |..
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------------------p~w 69 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------------------PDW 69 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------------------Cch
Confidence 334569999999999999998776 66777788889999999999988877777654 556
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH---HHHHHHHHHHC---CCCCCHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM---VWKVYKKMVQL---GVVANIHLY 203 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~ 203 (591)
+..|+..+.++.-.|++++|+.-|.+-++..+. |...++.+..++........ --.++..+... ........|
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 678888999999999999999999999998765 67777777777621111000 00111111110 000011222
Q ss_pred HHHHHHHHccC-------ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh-cCChh----HHHHHHHHHHHC-CCCCCH
Q 048533 204 NVLIHACCKSS-------DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK-KGMHY----EALAVQDRMERE-GISPDI 270 (591)
Q Consensus 204 ~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~----~a~~~~~~~~~~-~~~p~~ 270 (591)
..++..+-+.. +.+......-.+...+. ..+...-..... ...+. .......++.+. ....-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDE----LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcc----ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 22222221110 00001111000000000 000000000000 00000 000000000000 000012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSIL----- 345 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 345 (591)
.-...+.++..+..++..|.+.+........+..-++....+|...|.+.++....+...+.|.. ...-|+.+-
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 23456777788888999999999888876644555666777888889888888877776666532 222233333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 346 --RKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 346 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
.++.+.++.+.+...|.+.+.....|+. ..+....+++....+...-.+... ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3455567788888888886654333322 223344555555555443332221 1222233667788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
+..|...|.+++... +-|...|+...-+|.+.|.+..|+.-.+..++.++. ....|..=..++....++++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 567888999999999999999999998888887432 444555556666677789999999999
Q ss_pred HHhCCCCcCHH-HHHHHHHHHH
Q 048533 504 MQGNGILGDSV-IYTSLAYAYW 524 (591)
Q Consensus 504 ~~~~~~~p~~~-~~~~l~~~~~ 524 (591)
.++. .|+.. ....+.++..
T Consensus 452 ale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 ALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhc--CchhHHHHHHHHHHHH
Confidence 8886 34543 3333333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-07 Score=83.30 Aligned_cols=268 Identities=12% Similarity=0.002 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIH 278 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 278 (591)
|+.....+..++...|+.++|...|++....+ +-+..........+...|+.+....+...+.... .-....|..-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 34444445555555555555555555544332 1112222222233334444444444444443321 011222222222
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 357 (591)
......+++.|+.+-++.....|. ...+-.-...+...+++++|.-.|+..+... +.+...|..++.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHH
Confidence 233344455555555444433332 2223222334444455555555555444331 12344555555555555555555
Q ss_pred HHHHHHHHhCCCCCChHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 358 NRLLNEMNEKKIAPDNVTCNTLI-NAYCK-IGDTASAMKVKNRMLEAGLMLD-QFTYKALIHGFCKAKEMDIAKELLFGM 434 (591)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 434 (591)
.-+-+..... .+.+..+...+. ..+.- ..--++|.++++...+. .|+ ....+.+...+...|..+++..++++.
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 4444433322 122333333221 11111 11234555555555443 233 334445555555666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 435 LDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGL 474 (591)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 474 (591)
+.. .||....+.|.+.+...+.+.+|...|..+...++
T Consensus 465 L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 465 LII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred Hhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 542 35555666666666666666666666666665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-09 Score=87.58 Aligned_cols=206 Identities=15% Similarity=0.018 Sum_probs=165.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
.+...|+-.|.+.|++..|.+-+++.++.++. +..+|..+...|-+.|+.+.|.+-|+...+..+. +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 35566778899999999999999999998876 7889999999999999999999999999988766 778889999999
Q ss_pred HccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 211 CKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
|..|++++|...|++....- ...-..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999987642 2223567888888888999999999999988876433 345667788888889999999
Q ss_pred HHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048533 290 RRLFRDIKG-ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTY 341 (591)
Q Consensus 290 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 341 (591)
...++.... ..++..+.-..|..--..|+.+.+-++=..+.+. -|...-+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 999888865 4567777777778888888888887776666654 3444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-09 Score=97.83 Aligned_cols=221 Identities=12% Similarity=-0.008 Sum_probs=153.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
+..+.++..+..++...|-.+. ....|+.++.++...|++++|...|+++.+.+ |.++.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------------------P~~~~a~ 101 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------------------PDMADAY 101 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------------------CCCHHHH
Confidence 4577888888888764442122 24667889999999999999999999988865 4566788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..++..|...|++++|+..|++.++.++. +..++..+..++...|++++|.+.|+...+.++. +. ........+...
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~ 178 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHcc
Confidence 88999999999999999999999988765 6778888888999999999999999999887544 22 222223334556
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHhcCCHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG---I--SP-DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~--~p-~~~~~~~l~~~~~~~g~~~ 287 (591)
+++++|...+.+..... .++...+ .......|+...+ +.+..+.+.. + .| ...+|..+...+...|+++
T Consensus 179 ~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 179 LDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred CCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 78999999997755432 2332222 2223345555444 3444444321 1 11 2346777777788888888
Q ss_pred HHHHHHHHhhcCCC
Q 048533 288 EARRLFRDIKGATP 301 (591)
Q Consensus 288 ~A~~~~~~~~~~~~ 301 (591)
+|...|++.....|
T Consensus 254 ~A~~~~~~Al~~~~ 267 (296)
T PRK11189 254 EAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887766443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-09 Score=100.93 Aligned_cols=195 Identities=19% Similarity=0.179 Sum_probs=110.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc--------CCCCh-h
Q 048533 241 LIALYCKKGMHYEALAVQDRMERE-----G-ISPD-IVTYNSLIHGFCREGRMREARRLFRDIKG--------ATPNH-V 304 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~-~ 304 (591)
+...|...+++.+|..+|+++... | ..|. ..+++.|..+|.+.|++++|..+++...+ ..|.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555555555555555431 1 1122 23455555566666666666555555432 11221 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CC
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAK---GVYP----GVVTYNSILRKLCKEGRIRDANRLLNEMNEK-----K--IA 370 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 370 (591)
.++.++..++..+++++|..++....+. -+.+ -..+++.+...|.+.|++++|.++++..+.. | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 2445555666666666666666554332 0111 1345677777777777777777777766542 1 11
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLE----AGL--MLDQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
-....++.+...|.+.++..+|..+|.+... .|+ +-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234566677777777777777766665432 221 1224677888888888888888888877766
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-09 Score=96.99 Aligned_cols=221 Identities=15% Similarity=0.054 Sum_probs=141.1
Q ss_pred cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 90 KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 90 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
..+..+.++.-+..++..... .++.....+..++..|.+.|+.++|+..|+++++.++. +..+|+
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~--------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~ 102 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDL--------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYN 102 (296)
T ss_pred CchHHHHHHHHHHHHHccccC--------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 345556666666666643321 11233456777778888888888888888888887765 678888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG 249 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 249 (591)
.+...+...|+++.|...|+...+..+. +..++..+..++...|++++|.+.|+.....+ |+..............+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~ 179 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC
Confidence 8888888888888888888888887654 56677777778888888888888888887763 33322222222344567
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------CCC-ChhhHHHHHHHHHhcCCHHH
Q 048533 250 MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-------ATP-NHVTYTTLIDGYCRANDLEE 321 (591)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~-~~~~~~~li~~~~~~g~~~~ 321 (591)
++++|...|.+..... .|+...+ .+.. ...|+...+ ..+..+.. ..| ...+|..+...+.+.|++++
T Consensus 180 ~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 180 DPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred CHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 7888888886655332 2332222 2222 224444333 23333321 111 23467777777778888888
Q ss_pred HHHHHHHHHHCC
Q 048533 322 ALRLREVMAAKG 333 (591)
Q Consensus 322 a~~~~~~~~~~~ 333 (591)
|...|++..+.+
T Consensus 255 A~~~~~~Al~~~ 266 (296)
T PRK11189 255 AAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHhC
Confidence 888887777654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-11 Score=77.66 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAK 560 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (591)
||..+|+.++++|.+.|++++|.++|++|.+.|+.||..+|+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-07 Score=91.41 Aligned_cols=202 Identities=11% Similarity=-0.007 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....|+.++..+...|+.+++...+.......+.... ...........+...|++++|.+.+++.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT---------------ERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5667777777777778888877777666654432211 1112222344566778888888888887
Q ss_pred hhCCCccCHHhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 157 RVHNLMPHLHACTVLLNSLA----KDRLTDMVWKVYKKMVQLGVVAN-IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
.+..+. +...+.. ...+. ..+..+.+.+.+... ....|+ ......+...+...|++++|...+++.....
T Consensus 70 l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~- 144 (355)
T cd05804 70 LDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN- 144 (355)
T ss_pred HHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 776543 3333332 11222 234444444444431 111222 2333445566777788888888888877764
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPDI--VTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+.+...+..+..++...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34556667777777788888888888777765422 1222 2344566777777888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=92.56 Aligned_cols=306 Identities=12% Similarity=-0.000 Sum_probs=184.8
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
...+..+..++...++++.|...+..+....|......+.....+..+...|++++|.+.++++....|...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-------- 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-------- 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--------
Confidence 334455556665668889888888888776765333344445567788899999999999999988654322
Q ss_pred hhcCCCCCccchHHH---HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 121 KIHDDPDGNSHVLSW---LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..+.. ........+....+.+.+...... ..........+...+...|++++|.+.+++..+..+.
T Consensus 78 ----------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 78 ----------LALKLHLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred ----------HHHHHhHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12221 111112245555666665552222 1223445556677888999999999999999998755
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC-cCc--ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR-ADL--FTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPDIVTY 273 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~ 273 (591)
+...+..+...+...|++++|..++++....... ++. ..|..+...+...|++++|..++++...... .+.....
T Consensus 147 -~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 147 -DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHH
Confidence 5677888899999999999999999998765321 222 2355788889999999999999999864422 1122111
Q ss_pred -H--HHHHHHHhcCCHHHHHHH--H-HHhhcCCCC-hhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CH---
Q 048533 274 -N--SLIHGFCREGRMREARRL--F-RDIKGATPN-HVTY--TTLIDGYCRANDLEEALRLREVMAAKGVYP---GV--- 338 (591)
Q Consensus 274 -~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~-~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~--- 338 (591)
+ .++..+...|....+.++ + .......+. ...+ .....++...|+.+.|..+++.+......+ ..
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 1 223333344433333332 1 111111111 1122 245566677888888888887776532110 00
Q ss_pred HHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 048533 339 VTYNSILR--KLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 339 ~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 366 (591)
.+-..++. ++...|+.++|.+.+.....
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111222 23456777777776666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-07 Score=83.99 Aligned_cols=310 Identities=11% Similarity=0.034 Sum_probs=169.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.-...+|++..|+..|..+++..|+ +..+++.-+..|...|+-.-|+.-+.++++..+.- .
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF----~----------- 106 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF----M----------- 106 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH----H-----------
Confidence 34444457777777777777776665 66667777777777777777777777776643211 1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
-....-...+.++|.+++|..=|+..++.++..+ ....+..+. ...++ .......+
T Consensus 107 ---~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl-------~~~~e---------~~~l~~ql 162 (504)
T KOG0624|consen 107 ---AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG-----LVLEAQSKL-------ALIQE---------HWVLVQQL 162 (504)
T ss_pred ---HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHH-------HhHHH---------HHHHHHHH
Confidence 1111233456677777777777777777654211 000111100 00000 11122234
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+...|+...|+.....+++.. +.|+..+..-..+|...|.+..|+.-+....+.. .-+..++..+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 45566777888888887777663 4577777777788888888888877666655542 224556666777777788888
Q ss_pred HHHHHHHHhhcCCCChhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhc
Q 048533 288 EARRLFRDIKGATPNHVTYTTL-------------IDGYCRANDLEEALRLREVMAAKGVYPGV---VTYNSILRKLCKE 351 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~ 351 (591)
.++...++..+..||....-.. +......++|.++++-.+...+....... ..+..+-.++...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 8888888877777764332111 11122334444444444444443211011 1122333344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
|++.+|++...++++.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555555555431 112344444444555445555555555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-08 Score=99.21 Aligned_cols=237 Identities=19% Similarity=0.187 Sum_probs=171.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhc--------C
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMERE-----G-ISPDIVT-YNSLIHGFCREGRMREARRLFRDIKG--------A 299 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--------~ 299 (591)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++.+|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455666777777777777777665443 2 1334333 34577889999999999999988753 2
Q ss_pred CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 048533 300 TPN-HVTYTTLIDGYCRANDLEEALRLREVMAAK-----GV-YPGV-VTYNSILRKLCKEGRIRDANRLLNEMNEK---K 368 (591)
Q Consensus 300 ~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~ 368 (591)
.|. ..+++.|...|++.|++++|...++...+. |. .|.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 232 456788888999999999998887766532 21 2222 23566777788899999999999876442 1
Q ss_pred CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 048533 369 IAP----DNVTCNTLINAYCKIGDTASAMKVKNRMLEA----GLM---LDQFTYKALIHGFCKAKEMDIAKELLFGMLD- 436 (591)
Q Consensus 369 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 436 (591)
+.+ -..+++.|...|...|++++|.++++.++.. +.. -....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2367899999999999999999999998653 111 1245678889999999999999999887653
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 437 ---AG--FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 437 ---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
.| .+-...+|..|...|...|+++.|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 223357889999999999999999999998873
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.3e-07 Score=78.67 Aligned_cols=330 Identities=10% Similarity=0.047 Sum_probs=207.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
++.-+..++..+...|++.+|+.-|..+.+.++.+..++ ..-+..|...|+-.-|+.=|.+.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~ai------------------frRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAI------------------FRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHH------------------HHHHHHHhhhcCCccchhhHHHH
Confidence 456677899999999999999999998887665443333 33445688889999999888888
Q ss_pred hhCCCccCHHh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 157 RVHNLMPHLHA-CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 157 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
++. +||... -..-...+.++|.+++|..-|+.+++..+. .. ....+..+.-..++-..+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l~------------ 159 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS--NG---LVLEAQSKLALIQEHWVLV------------ 159 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHHH------------
Confidence 876 566433 233446777889999999999988876543 11 1122222222222222222
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-CCChhhHHHHHHHHH
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-TPNHVTYTTLIDGYC 314 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 314 (591)
..+..+...|+...|+.....+.+.. +-|...+..-..+|...|++..|+.-++...+. ..++..+-.+...+.
T Consensus 160 ----~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 160 ----QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred ----HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 23344567789999999999998863 337777888889999999999999888887764 345677777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMK 394 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 394 (591)
..|+.+.++..+++..+. .||....... | ..+.+..+.++.|.+ ....+++.++++
T Consensus 235 ~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle 290 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLE 290 (504)
T ss_pred hhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHH
Confidence 999999999999998875 4554321111 1 112222222222222 123344555555
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 395 VKNRMLEAGLMLDQF---TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 395 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
..+...+..+..... .+..+-.++...+++.+|++.-.++++.. +.|..++.--..+|.-...++.|+.-|+.+.+
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555555543221122 22333444555666666666666665532 12255555556666666666666666666665
Q ss_pred CC
Q 048533 472 RG 473 (591)
Q Consensus 472 ~~ 473 (591)
.+
T Consensus 370 ~n 371 (504)
T KOG0624|consen 370 LN 371 (504)
T ss_pred cC
Confidence 43
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=75.98 Aligned_cols=49 Identities=49% Similarity=0.920 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-07 Score=91.45 Aligned_cols=457 Identities=9% Similarity=-0.028 Sum_probs=228.9
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
++...|+..|-.+++..|. -..+|..|+..|...-+..+|.+.|+++-+.+. .+....-
T Consensus 472 K~~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------------------tdaeaaa 530 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------------------TDAEAAA 530 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------------hhhhhHH
Confidence 5577778888777776665 345666788888877777788888877766442 2223334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..+..|++..+++.|..+.-...+..+. .-...|..+.-.+.+.++...|..-|+...+..+. |...|..+..+|.+.
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhc
Confidence 4555666777777776663333222111 01122333444555566666677777766666554 666677777777777
Q ss_pred CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH
Q 048533 214 SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE------GISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
|.+..|.++|.+..... |.+...-.-.....+..|.+.+|...+...... +..--..++..+...+...|=..
T Consensus 610 Gry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred CceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 77777777776665542 112222222233345566677766666655432 00111122222222222223222
Q ss_pred HHHHHHHHhhc--------C-CCChhhHHHHHHHH-----------------------HhcCCH---H---HHHHHHHHH
Q 048533 288 EARRLFRDIKG--------A-TPNHVTYTTLIDGY-----------------------CRANDL---E---EALRLREVM 329 (591)
Q Consensus 288 ~A~~~~~~~~~--------~-~~~~~~~~~li~~~-----------------------~~~g~~---~---~a~~~~~~~ 329 (591)
+|..++++..+ . ..+...|-.+.++| -..+.. + -+.+.+-.-
T Consensus 689 kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 689 KAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 23322222111 0 11111121111111 111111 0 000111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 330 AAKGVYPGVVTYNSILRKLCK----E----GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 330 ~~~~~~p~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+. ..+..+|..+...|.+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-+...|-+-..
T Consensus 769 lsl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 769 LSL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 000 1112233333333222 1 12234556666555431 2255556655444 555666666666655544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 048533 402 AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFV----SRGLCVD 477 (591)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 477 (591)
.. +....+|..+...+.+..+++-|...|....... +.+...|-.........|+.-++..+|..-. ..|--++
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 43 2355667777777777888888888888777643 2233444333333445677777777776522 1233334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH----------HHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFN----------LMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~----------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..-|..........|+.++-+.-.+ +... +.+-....|...+...-+.+.+.+|..+..++..
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444333334445555554443332 2222 2333457777788788888888887777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-08 Score=90.26 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=160.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
+...++.+....+..+.|+..+..+++.+|. +..+++....++...| .+++++..++++...++
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------------ 103 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------------ 103 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------------
Confidence 4555666677778999999999999998887 6777887788888888 67999999999988663
Q ss_pred hcCCCCCccchHHHHHHHHHhcCCh--HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMT--QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.+..++.....++.+.|+. ++++.+++++++.+++ |..+|+...-++...|+++.+++.++++++.++. +
T Consensus 104 ------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N 175 (320)
T PLN02789 104 ------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-N 175 (320)
T ss_pred ------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-c
Confidence 3344555554455555653 6789999999998887 8999999999999999999999999999998876 7
Q ss_pred HHHHHHHHHHHHcc---CCh----hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCC
Q 048533 200 IHLYNVLIHACCKS---SDV----DKVEKLLCEMEFKDVRADLFTYNTLIALYCKK----GMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 200 ~~~~~~ll~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p 268 (591)
..+|+.....+.+. |.. +...++..+.+... +-|..+|+.+...+... +...+|.+.+.+..+.++ .
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~ 253 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-N 253 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-C
Confidence 77777766665554 222 45677776766654 55778888888877763 344567777777665432 2
Q ss_pred CHHHHHHHHHHHHh
Q 048533 269 DIVTYNSLIHGFCR 282 (591)
Q Consensus 269 ~~~~~~~l~~~~~~ 282 (591)
+......|++.|+.
T Consensus 254 s~~al~~l~d~~~~ 267 (320)
T PLN02789 254 HVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHh
Confidence 55667777777764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.5e-06 Score=83.11 Aligned_cols=403 Identities=11% Similarity=0.140 Sum_probs=202.3
Q ss_pred hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC--ccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 113 PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL--MPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..++.++++..-....++.-.+..+.++...+-+.+-+++++++.-.+. .-+...-+.|+-...+ -+..++.+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 3344455544434444555566666666666666666666666654321 1112222333332222 233344444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+-..+. ..+...+...+-+++|..+|++.-. +..+.+.|+. ..+..+.|.+.-++.- .+
T Consensus 1046 LdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p 1104 (1666)
T KOG0985|consen 1046 LDNYDA-------PDIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EP 1104 (1666)
T ss_pred hccCCc-------hhHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------Ch
Confidence 433221 1233444455556666666655421 3333333333 2344455544444332 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK 350 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 350 (591)
..|+.+..+-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++..+.+....+....|... ..++-+|++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 556666666666666666666665442 45556666666666666666666666655554444433 345566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 351 EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKEL 430 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 430 (591)
.++..+.++++ .-|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443 2345555555555566666666555554322 2345555555555666555554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510 (591)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 510 (591)
-+++ .+..+|-.+..+|...+.+..| +|...++.....-...++..|...|-+++.+.+++...... +
T Consensus 1243 aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-R 1310 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-R 1310 (1666)
T ss_pred hhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-H
Confidence 4332 2344555555555554443322 22223333445556666777777777777766666554320 1
Q ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCC------CCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRR-RLM------ITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 511 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
.....|+-|.-.|.+- ++++..+.++-...+ .++ -....|+.+.-.|.+..+++-+..-+|
T Consensus 1311 AHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm 1378 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMM 1378 (1666)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1234455555555443 344444444433332 111 012356666666666666555444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-09 Score=98.07 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|+...|.-+|+.+.+.+|. ..++|..|+.+....++-..|+..++++.+.. |.+-.++
T Consensus 298 nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------------P~NleaL 356 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELD------------------PTNLEAL 356 (579)
T ss_pred cCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC------------------CccHHHH
Confidence 46666666666666666665 56666666666666666666666666666544 3344455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..|+..|+..|.-.+|++.|+.-+...++ |..+..+ ...+++..- ..+...
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~-----------------------~s~~~~ 407 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT-----------------------KSFLDS 407 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhcccc-CccccccCC-----------------------cCCCCH
Confidence 55566666666666666666665544322 0000000 000000000 000111
Q ss_pred CChhhHHHHHHHH-hhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 214 SDVDKVEKLLCEM-EFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 214 g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
..+....++|-++ ...+..+|..+...|.-.|--.|++++|.+.|+..+...+. |...||.|...++...+.++|+..
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHH
Confidence 1111222222222 22222244444555555555555555555555555543211 344555555555555555555555
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
|.+..+..|+ +.+...|.-.|...|.+++|.+.|-.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 5555555554 33444444445555555555554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-07 Score=79.70 Aligned_cols=393 Identities=12% Similarity=0.094 Sum_probs=221.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV-LIHACCK 212 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 212 (591)
...+..+.+..++.+|++++..-.+++++ +......+..+|....++..|-..|+++...- |...-|.. -...+-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHH
Confidence 33444456777888888888887777655 77778888888888888888888888887653 33333322 2345566
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
.+.+..|+++...|.... ..-..+...-.......+++..+..+.++....| +..+.+.......+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 778888888887776431 0111112222223345677777877777766432 444555555566778888888888
Q ss_pred HHHhhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHHH----
Q 048533 293 FRDIKGA--TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVY-------------PGVV--------TYNSIL---- 345 (591)
Q Consensus 293 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~ll---- 345 (591)
|+...+. -.....|+.. -+..+.++++.|++...++.++|++ ||.. .-+.++
T Consensus 167 FqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 8887652 1223445543 4455678888888888888777643 1211 112233
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHhC-CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 346 ---RKLCKEGRIRDANRLLNEMNEK-KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA 421 (591)
Q Consensus 346 ---~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 421 (591)
..+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.- ..+++.+..+-+.-+....+ ....||..++-.||++
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 2345678888888887777433 2234666665554322 23445555555555555543 4567888888899998
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HH
Q 048533 422 KEMDIAKELLFGMLDAGF-SPSYCSYSWLVDGYC-NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV---DY 496 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~ 496 (591)
.-++.|-.++.+-....+ -.+...|+. +.++. -.-..+++.+-++.+.+. +.-.......-+..-....+- ..
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888888887765332111 122333333 33332 344566666655554332 000000111111111111111 11
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+++-+++..+. -..+..+-.+.|.+..++..+.++|..-.+.
T Consensus 402 ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 402 AVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22222222221 1122334445566788888888888877664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-07 Score=91.99 Aligned_cols=366 Identities=9% Similarity=-0.036 Sum_probs=203.3
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....|+.+|....+...|...|+.|-+.+|. +..+....+..|++...++.|..+.-...+..+--
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~----------- 559 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF----------- 559 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH-----------
Confidence 4466677776656788999999999988776 77777789999999999999999854443322100
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
....-+....-.|...++..+|+.-|+...+.+++ |...|..+..+|...|.+..|.++|.++....+......
T Consensus 560 -----~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 560 -----ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred -----HHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 00011222444588889999999999999998887 889999999999999999999999998887643311111
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCC------CCcCcccHHHHHHHHHhcCChhHHHHHHHHHH-------HCCCCCC
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKD------VRADLFTYNTLIALYCKKGMHYEALAVQDRME-------REGISPD 269 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~p~ 269 (591)
|. ..-.-+..|++.+|...+..+...- ...-..++-.+...+...|-...+.+.+++-+ ......+
T Consensus 634 fk-~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 634 FK-EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 21 2233456788888888887765421 00012222223333333343333333333322 1111112
Q ss_pred HHHHHHHHHHH-------------------H----hcCCH---H---HHHHHHHHhhcCCCChhhHHHHHHHHHh----c
Q 048533 270 IVTYNSLIHGF-------------------C----REGRM---R---EARRLFRDIKGATPNHVTYTTLIDGYCR----A 316 (591)
Q Consensus 270 ~~~~~~l~~~~-------------------~----~~g~~---~---~A~~~~~~~~~~~~~~~~~~~li~~~~~----~ 316 (591)
...|-.+.++| . +.+.. + -+.+.+-.-.....+..+|..++..|.+ .
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHc
Confidence 22222111111 1 11111 1 0111111111122234455555444433 1
Q ss_pred C----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 317 N----DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 317 g----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
+ +...|...+.+..+.. ..+..+|+.|. .....|.+.-+...|-.-.... +....+|..+.-.+.+..|++.|
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 1 2345666776666542 22444455443 3355566666666655544432 23556666666667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFG 433 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 433 (591)
...|.......+ .+...|..........|+.-++..+|..
T Consensus 870 ~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 870 EPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777766655421 2333444333333445555555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-06 Score=82.46 Aligned_cols=408 Identities=15% Similarity=0.057 Sum_probs=248.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+.+.+..|+++.|+.+|-..+... |.+-..|+.-..+|+..|++++|++=-.+.++.++. -
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w 69 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-W 69 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-h
Confidence 456678899999999999988764 335566777788899999999999877777776543 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
...|.....++.-.|++++|+..|.+-++.... +...++.+..++.. +.+. +.. ..++..|..+..-
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~ 136 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE----DYAA-----DQL---FTKPYFHEKLANL 136 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH----HHHh-----hhh---ccCcHHHHHhhcC
Confidence 668999999999999999999999999987654 66677777776611 1111 100 0011112111110
Q ss_pred HHhcC-ChhHHH-HHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCCHHH-H---HHHH---------HHhhcCCC----
Q 048533 245 YCKKG-MHYEAL-AVQDRMEREGISPD-IVTY---NSLIHGFCREGRMRE-A---RRLF---------RDIKGATP---- 301 (591)
Q Consensus 245 ~~~~g-~~~~a~-~~~~~~~~~~~~p~-~~~~---~~l~~~~~~~g~~~~-A---~~~~---------~~~~~~~~---- 301 (591)
-..++ ..+.+. .++..+.+. |+ ...| ..++.+.......+. . .... .......|
T Consensus 137 p~t~~~~~~~~~~~~l~~~~~~---p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d 213 (539)
T KOG0548|consen 137 PLTNYSLSDPAYVKILEIIQKN---PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED 213 (539)
T ss_pred hhhhhhhccHHHHHHHHHhhcC---cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch
Confidence 00000 000111 111111110 10 0000 001111000000000 0 0000 00000001
Q ss_pred ---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048533 302 ---------NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD 372 (591)
Q Consensus 302 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (591)
-..-...+.....+..++..|.+.+....... -+..-++....++...|.+.+.........+.|.. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 01123456677777888889998888888764 35555666777788888887777776666655422 1
Q ss_pred hHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 048533 373 NVTC-------NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSY-C 444 (591)
Q Consensus 373 ~~~~-------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 444 (591)
..-| ..+..+|.+.++.+.++..|.+.......|+.. .+....+++....+...-.+ |.. .
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~ 359 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAE 359 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence 1222 223446666778888888888876654333221 22333444444444433322 332 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYW 524 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (591)
-...-...+.+.|++..|...+.++++..+. |...|....-+|.+.|.+..|+.=.+..++.+ ++....|..-..++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 1222256677899999999999999998754 89999999999999999999999988888762 223466766777888
Q ss_pred HcCChhHHHHHHHHHHHCC
Q 048533 525 RAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~ 543 (591)
...++++|.+.|++.++.+
T Consensus 438 ~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8889999999999999975
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-06 Score=85.74 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC------chHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS------TPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQ 151 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 151 (591)
-.+|+.-+.-+-..++.+.|++.|++........ ++.-++..++ ...++..|.|-..-.-..|+.+.|+.
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~----~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR----RKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH----hccchHHHHHHHHHHhcccchHHHHH
Confidence 4566777777777788888888887644322111 1111222222 23456788888888888899999999
Q ss_pred HHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
+|..+.. |-.+.+..+-+|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|.+..
T Consensus 934 ~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---- 994 (1416)
T KOG3617|consen 934 FYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---- 994 (1416)
T ss_pred HHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH----
Confidence 8876643 566777888888888888877653 255555567888888899999888887764
Q ss_pred CcCcccHHHHHHHHHhcCCh---------------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 232 RADLFTYNTLIALYCKKGMH---------------YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~---------------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
++...|+.|-.++.- -.|-.+|++. |.. +...+..|.+.|.+.+|+++--.-
T Consensus 995 -----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 995 -----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 233344433322221 2222333321 111 122344566777777766654322
Q ss_pred hc------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 297 KG------------ATPNHVTYTTLIDGYCRANDLEEALRLREVM 329 (591)
Q Consensus 297 ~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 329 (591)
.+ ...|....+.-.+.++...++++|..++-..
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 2234455555555666666666666655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-07 Score=79.99 Aligned_cols=357 Identities=14% Similarity=0.084 Sum_probs=187.1
Q ss_pred ccccccCChHHHHHHHHHHhccccch---hcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHH
Q 048533 3 SLVALNSDTKFIKTISAIMLKGHWAK---LLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQ 79 (591)
Q Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~ 79 (591)
+++.+++ -.+..+|.++++..++.+ .+.......|.+..-..+|+..|.+..++..|-+.|+......|. -..
T Consensus 4 ~g~~i~E-Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~---~~q 79 (459)
T KOG4340|consen 4 SGAQIPE-GEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE---LEQ 79 (459)
T ss_pred ccccCCC-CchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH---HHH
Confidence 4444444 234455555555555442 222223334445555566677777667777788888777665554 122
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
-.+.-++.+.+.+.+.+|..+...|... +.+.+..++ .-.......+++..+..+.++....
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~-----~~L~~~~lq-------------LqaAIkYse~Dl~g~rsLveQlp~e 141 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN-----PALHSRVLQ-------------LQAAIKYSEGDLPGSRSLVEQLPSE 141 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC-----HHHHHHHHH-------------HHHHHhcccccCcchHHHHHhccCC
Confidence 2223466777778888888777666542 122222222 1122234556677777777666543
Q ss_pred CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc--
Q 048533 160 NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT-- 237 (591)
Q Consensus 160 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 237 (591)
| +..+.+.......+.|+++.|.+-|+...+.+--.....|+..+ +..+.|+++.|+++..+++.+|++..+..
T Consensus 142 n---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 142 N---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred C---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 2 33344444455556777777777777777654333455565444 34456777777777777777765432221
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc---CCCChhhHHHHHHH
Q 048533 238 --YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG---ATPNHVTYTTLIDG 312 (591)
Q Consensus 238 --~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~li~~ 312 (591)
-...+++ ...|+. .. |-.++ -...+|.-...+.+.|+++.|.+.+.+|+. .+.|.++...+.-.
T Consensus 218 Gm~tegiDv-rsvgNt---~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGIDV-RSVGNT---LV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCch-hcccch---HH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 0000000 000000 00 00000 123445555667777888888888877753 34455555444322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChHHHHHHHHHHH-HcCCHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA-PDNVTCNTLINAYC-KIGDTA 390 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~~~~~ 390 (591)
= ..+++.+..+-+..+...+. ....||..++-.||+..-++-|-.++.+-...... .+...|+ |+.++. -.-..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHH
Confidence 2 23445555555555555533 34567777777888887777777776653332111 1333333 333332 233455
Q ss_pred HHHHHHHHH
Q 048533 391 SAMKVKNRM 399 (591)
Q Consensus 391 ~a~~~~~~~ 399 (591)
++.+-++.+
T Consensus 364 ea~KKL~~L 372 (459)
T KOG4340|consen 364 EAFKKLDGL 372 (459)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.3e-08 Score=90.09 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=152.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
+.-.|++..++.-.+ ....+...+......+.+++...|+++.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445688888887666 334443445556677778888888876543 3333333 55655555555444443455566
Q ss_pred HHHHHHHhhCCCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
..-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.+.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65555544333221 2222223334555678888888877542 3566677778888888888888888888887
Q ss_pred CCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHH
Q 048533 299 ATPNHVTYT---TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 299 ~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
...|....+ +.+..+...+.+++|..+|+++... ..+++.+.+.+..+....|++++|.+++.+..+.+. -++.+
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~ 237 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDT 237 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHH
Confidence 655544332 2333333344688888888887654 456777788888888888888888888888776543 35667
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 048533 376 CNTLINAYCKIGDT-ASAMKVKNRMLEA 402 (591)
Q Consensus 376 ~~~li~~~~~~~~~-~~a~~~~~~~~~~ 402 (591)
+..++.+....|+. +.+.+.+.++...
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777776 5566677776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-05 Score=78.44 Aligned_cols=384 Identities=15% Similarity=0.196 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
++.......++...+-..+-+++++++.-.+.. +..+.+.-+.|+-.-. .-+..+..++.+++.
T Consensus 984 Pe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~---------------Fse~~nLQnLLiLtAi-kad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 984 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSV---------------FSENRNLQNLLILTAI-KADRTRVMEYINRLD 1047 (1666)
T ss_pred hHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc---------------cccchhhhhhHHHHHh-hcChHHHHHHHHHhc
Confidence 444455677888899999999999998764421 1222333333333333 344556667777766
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
..+. |+ +...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.++-++.. ....
T Consensus 1048 nyDa-~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1048 NYDA-PD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred cCCc-hh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHH
Confidence 5542 22 4556667778899999998763 35556666654 3577888888877764 3468
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAN 317 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 317 (591)
|..+..+-.+.|...+|++-|-+.. |+..|..+++...+.|.+++-.+++...++.......=+.++-+|.+.+
T Consensus 1107 WsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc
Confidence 9999999999999999988875432 6788999999999999999999999888764444455567888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 048533 318 DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKN 397 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 397 (591)
+..+..+++ .-|+......+..-|...|.++.|.-+|.. ...|..|...+...|+++.|...-+
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 988776654 247777788888888889999888877754 3457888888888899888876654
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048533 398 RMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 477 (591)
+. .+..+|..+-.+|...+.+.-| +|-..++.....-+.-++..|...|-+++.+.+++...... +..
T Consensus 1245 KA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAH 1312 (1666)
T KOG0985|consen 1245 KA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAH 1312 (1666)
T ss_pred hc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHH
Confidence 43 3667888888888877766544 23333344455567778888888899888888887766331 124
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------cCHHHHHHHHHHHHHcCChhHHH
Q 048533 478 VSVYRALIRRFCKKEKVDYAQRLFNLMQGN-GIL------GDSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 478 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
...|+.|.-.|++- ++++..+-++..-.+ +++ .....|.-++-.|.+-..++.|.
T Consensus 1313 MgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1313 MGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 45666666666654 345444444433221 111 12346777777777666666553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-07 Score=86.42 Aligned_cols=375 Identities=13% Similarity=0.065 Sum_probs=204.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC--
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-- 160 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 160 (591)
..++.|.+.|...+|.+....-.. ...+..++..+... -.....|......|-+..++++|++.|.+-...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~a----lik~elydkagdlfeki~d~dkale~fkkgdaf~ka 693 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAA----LIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKA 693 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHH----HHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHH
Confidence 346667777777776654321111 01111222111110 0011344445555666666666666665422111
Q ss_pred -------CccCHHhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC
Q 048533 161 -------LMPHLHAC-TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR 232 (591)
Q Consensus 161 -------~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 232 (591)
++..+... ..-...+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+..+.
T Consensus 694 ielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk-- 762 (1636)
T KOG3616|consen 694 IELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK-- 762 (1636)
T ss_pred HHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--
Confidence 11111111 112233445566666666554332 12234556667788888888888887663
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDG 312 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~ 312 (591)
.-...|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.++-.+..+.......|-+-..-
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAED 833 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHh
Confidence 23456777888888889999888888543 235557788889999999988888887766667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
+-+.|++.+|.++|-... .|+ ..|.+|-+.|..++.+++..+-... .-..+...+..-+-..|+...|
T Consensus 834 ldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHH
Confidence 778888888887774433 234 3456677777777777776654321 1223445556666667777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHCCCCCCHH------HHHHHHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGM--------------LDAGFSPSYC------SYSWLVDG 452 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~~~~~~------~~~~l~~~ 452 (591)
..-|-+.-+ |.+.+..|-..+-|++|.++-+.- ...|-..-.. .+..-++.
T Consensus 902 e~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 902 EEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 665543321 333344444444444444432210 0000000000 11122333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+..+.++-|..+-+-..+... ..+...+.-.+-..|++++|-+-|-+.++.
T Consensus 973 a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 4455566666666555444322 122233344456788888888877777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-05 Score=79.37 Aligned_cols=171 Identities=13% Similarity=0.154 Sum_probs=112.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++......|..++|..+|++..+.+ .|-..|-..|++++|+++-+.-.+...
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~D--------------------------LlNKlyQs~g~w~eA~eiAE~~DRiHL- 857 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRYD--------------------------LLNKLYQSQGMWSEAFEIAETKDRIHL- 857 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH--------------------------HHHHHHHhcccHHHHHHHHhhccceeh-
Confidence 44555567899999999999887632 333457778999999988765444333
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHccCChhhHHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMV----------QLGV---------VANIHLYNVLIHACCKSSDVDKVEKLL 223 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~ 223 (591)
..+|......+-..++.+.|++.|++.- +..+ ..|...|.....-+-..|+.+.|+.+|
T Consensus 858 --r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 858 --RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred --hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3467777777888888888888887532 1111 113344444445455667777777777
Q ss_pred HHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 224 CEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 224 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.... -|..+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 936 ~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK---------DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh---------hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6654 2455666666677777777665542 245555667778888888888888877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.7e-06 Score=90.39 Aligned_cols=335 Identities=13% Similarity=0.060 Sum_probs=212.0
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI------SPD--IVTYNSLIHGF 280 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~p~--~~~~~~l~~~~ 280 (591)
.....|+++.+..+++.+.......+..........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221112333334455566778999999998887754310 111 11222334556
Q ss_pred HhcCCHHHHHHHHHHhhcCCCC--h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKGATPN--H----VTYTTLIDGYCRANDLEEALRLREVMAAK----GVY-PGVVTYNSILRKLC 349 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~ 349 (591)
...|++++|...++......+. . ...+.+...+...|++++|...+.+.... |.. +...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999887642221 1 23455666778899999999998887643 111 11234455566778
Q ss_pred hcCCHHHHHHHHHHHHhC----CCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHH
Q 048533 350 KEGRIRDANRLLNEMNEK----KIA--P-DNVTCNTLINAYCKIGDTASAMKVKNRMLEAG--LML--DQFTYKALIHGF 418 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 418 (591)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876542 211 1 22334455667778899999999988875531 112 233444566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHHH--H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDA--GFSPSYCS--Y--SWLVDGYCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALIRRFC 489 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 489 (591)
...|+++.|...+...... ........ . ...+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887542 11111111 0 1122444568899999999877654321111 112446677788
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 490 KKEKVDYAQRLFNLMQGN----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 490 ~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988752 33322 2466778888999999999999999998863
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-07 Score=89.78 Aligned_cols=252 Identities=13% Similarity=0.039 Sum_probs=195.2
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh
Q 048533 139 FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDK 218 (591)
Q Consensus 139 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 218 (591)
-+.+.|++.+|.-.|+..++.++. +..+|..|.......++-..|+..+.++.+..+. +..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 477889999999999999999877 8999999999999999999999999999998776 78888888889999999999
Q ss_pred HHHHHHHHhhCCCC--------cCcccHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 219 VEKLLCEMEFKDVR--------ADLFTYNTLIALYCKKGMHYEALAVQDRME-REGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 219 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
|...++..+....+ ++...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654310 00000000 12223334455566665554 445457888888999999999999999
Q ss_pred HHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 290 RRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
...|+......|+ ...||.|...+....+.++|+..|.+.++. .|+ +.+...|.-.|...|.+++|.+.|-..+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999987775 778999999999999999999999999986 555 344555666789999999999988765432
Q ss_pred ---------CCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 368 ---------KIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 368 ---------~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+..++...|..|=.++.-.++.|.+....
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 12235578888888888888887655544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-05 Score=72.41 Aligned_cols=427 Identities=11% Similarity=0.110 Sum_probs=239.8
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChH
Q 048533 68 ESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQ 147 (591)
Q Consensus 68 ~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (591)
++.+|. ++.+|..|++-+..+ .+++++..++++...- |..+.++..-+..-.+..+++
T Consensus 13 ie~nP~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~F------------------P~s~r~W~~yi~~El~skdfe 70 (656)
T KOG1914|consen 13 IEENPY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF------------------PSSPRAWKLYIERELASKDFE 70 (656)
T ss_pred HhcCCc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC------------------CCCcHHHHHHHHHHHHhhhHH
Confidence 333665 999999999877766 9999999999987643 445566777788888899999
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHhc-CChhH----HHHHHHHHH-HCCCCCC-HHHHHHHHHHHH---------
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAKD-RLTDM----VWKVYKKMV-QLGVVAN-IHLYNVLIHACC--------- 211 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~ll~~~~--------- 211 (591)
...++|.+.+..- .+...|...+....+. ++... ..+.|+... +.|+.+- ...|+..+..+-
T Consensus 71 ~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 71 SVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred HHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 9999999988763 3677788777765542 33322 233344433 4454332 234555554332
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 291 (591)
...+.+...++++++...-+ ++.++.+.-|....+. .|..|-..++. -+...+..|.+
T Consensus 149 e~QRI~~vRriYqral~tPm-----------------~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~ 206 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVTPM-----------------HNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARR 206 (656)
T ss_pred HHHHHHHHHHHHHHHhcCcc-----------------ccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHH
Confidence 22344556667777654311 1112222222211110 11111111110 01122333333
Q ss_pred HHHHhhc-----------CCCC--------hhhHHHHHHHHHhcC------C--HHHHHHHHHHHH-HCCCCCCHHHH-H
Q 048533 292 LFRDIKG-----------ATPN--------HVTYTTLIDGYCRAN------D--LEEALRLREVMA-AKGVYPGVVTY-N 342 (591)
Q Consensus 292 ~~~~~~~-----------~~~~--------~~~~~~li~~~~~~g------~--~~~a~~~~~~~~-~~~~~p~~~~~-~ 342 (591)
+++++.. ++|. ...|-.+|..-...+ . -....-.+++.. -.+..|+.... .
T Consensus 207 ~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s 286 (656)
T KOG1914|consen 207 VYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYS 286 (656)
T ss_pred HHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3333321 0000 001212221111000 0 001111122211 11223332211 0
Q ss_pred HH----HHHHHhcCC-------HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCH
Q 048533 343 SI----LRKLCKEGR-------IRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG---DTASAMKVKNRMLEAGLMLDQ 408 (591)
Q Consensus 343 ~l----l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~ 408 (591)
.. -..+...|+ -+++..+++..++.-...+..+|..+...--..- ..+....+++++...-..--.
T Consensus 287 ~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t 366 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT 366 (656)
T ss_pred HHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc
Confidence 00 111222232 3456666665554322223334443333221111 255566666666554322223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
.+|..++..-.+..-++.|..+|.++.+.+..+ +..+.++++..|| .++.+-|.++|+.-++. ..-++.-....+..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 457777777778888999999999999877666 6677788887776 57888999999887775 33355666677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+...++-..++.+|++....++.|+. .+|..+++--..-|+.+.+.++-+++...
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 88889999999999999988666665 78999999999999999999888887664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.2e-05 Score=75.17 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=149.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+++.+|+.......+..|+ ...+...-+-.+.+.|+.++|..+++...... +.+..++.
T Consensus 23 ~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~------------------~~D~~tLq 81 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLK------------------GTDDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC------------------CCchHHHH
Confidence 7899999999999998887 66665566778899999999998887765433 22344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
.+-.+|...++.++|..+|++..... |+......+..+|.+.+.+.+-.++--++.+.- +-+...+=+++......-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhc
Confidence 67778999999999999999999874 568888888899999888766444444443322 223333333444433221
Q ss_pred -C---------hhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHh
Q 048533 215 -D---------VDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQD-RMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 215 -~---------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
. ..-|.+.++.+.+.+ .-.+..-...-...+...|.+++|++++. ...+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 223566667766554 11122223333455667889999999983 44443333344455566777888
Q ss_pred cCCHHHHHHHHHHhhcCCCCh
Q 048533 283 EGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~ 303 (591)
.+++.+..++-.++....+|.
T Consensus 239 l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcChHHHHHHHHHHHHhCCcc
Confidence 888888888887776544543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-05 Score=72.28 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFC---KAKEMDIAKELLFGMLDA-GFSPSYCSYSWLVDGYCNKNNEEALLK 464 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (591)
.+++..+++.....-..-+..+|..+..--- .....+.....++++... ...|+ .+|..++..-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666666554422223344444333211 112356666777776653 23344 467777888888888999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 465 LLDEFVSRGLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+|.++.+.+..+ +..++++++.-|+ +++.+.|.++|+.-.++ ...++..-...++-+...|+-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999887666 7788888888665 68899999999987765 33344555678888999999999999999999997
Q ss_pred CCCCH--HHHHHHHHhhhcchhHHH
Q 048533 544 LMITL--KIYRSFSASYAKDNEILD 566 (591)
Q Consensus 544 ~~~~~--~~~~~li~~~~~~~~~~~ 566 (591)
+.+|. ..|+.+|+-=..-|++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHH
Confidence 77664 489988887666666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-06 Score=90.25 Aligned_cols=375 Identities=11% Similarity=-0.040 Sum_probs=233.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH-LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
..++......+...|++.+|+..+..+.. .+. ..........+...|+++.+...++.+.......+.........
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 34555566778888888888765554422 111 11122233445567787777777766532111112223334455
Q ss_pred HHHccCChhhHHHHHHHHhhCCC------CcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDV------RAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSL 276 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l 276 (591)
.+...|+++++..++......-- .+. ......+...+...|++++|...+++....-...+. ...+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 56678999999998887654210 111 111222344566899999999999987763111121 344566
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcC-----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKGA-----TPN--HVTYTTLIDGYCRANDLEEALRLREVMAAK----GVY--P-GVVTYN 342 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--p-~~~~~~ 342 (591)
...+...|++++|...+.+.... .+. ..+...+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 67778899999999999887631 111 234556677788999999999998876542 211 1 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH-----H
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKK--IAP--DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML-DQFTY-----K 412 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~ 412 (591)
.+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+.......... ....+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 45556677899999999998875531 111 23345556677888999999999998875431111 11111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 048533 413 ALIHGFCKAKEMDIAKELLFGMLDAGFSPSY---CSYSWLVDGYCNKNNEEALLKLLDEFVSR----GLCV-DVSVYRAL 484 (591)
Q Consensus 413 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 484 (591)
..+..+...|+.+.|...+............ ..+..+..++...|+.++|...++++... +..+ ...+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 1224445688999999998776542211111 12345667788899999999999988753 2222 23456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
..++...|+.++|...+.+..+.
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999999999999875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.1e-06 Score=80.07 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=81.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHH
Q 048533 313 YCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 392 (591)
.....++.+|+.+++.++.... -..-|..+...|...|+++.|+++|-+.- .++-.|.+|.+.|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3344555666666665555421 12234555566666666666666664321 234456666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+- .|+. .+..|-+.|..+..+++..+-.-.
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 66554432 223334444444444555666666665553332 2332 244455555555555444432211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 473 GLCVDVSVYRALIRRFCKKEKVDYAQRLFNL 503 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 503 (591)
.-..|-..+..-+-..|+...|..-|-+
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1123334444445555555555544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-07 Score=87.59 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048533 350 KEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK----AKEMD 425 (591)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 425 (591)
..|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. .| .+...+..++.. ...+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 345555555554321 134444445555555555555555555554431 12 222222222221 22355
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV-DYAQRLFNLM 504 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 504 (591)
+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.++.+.+.. ++.+...++.+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554432 2345555555555555555555555555555544332 344444444444444444 3444455554
Q ss_pred Hh
Q 048533 505 QG 506 (591)
Q Consensus 505 ~~ 506 (591)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-06 Score=80.88 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=140.8
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+...++.++|+.++++++..++ .+..++.....++...| .+++++..++++.+.+++ +..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP------------------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyq 107 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP------------------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQ 107 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc------------------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chH
Confidence 3345677888888888887653 33445555555666666 578999999999988877 777
Q ss_pred hHHHHHHHHHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLT--DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
+|+.....+.+.|.. +.++..++.+.+.+.+ +..+|+....++...|+++++++.++++++.+ +.+..+|+....+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHH
Confidence 888776666666653 6778888888888766 78888888888888899999999999988876 3467778777666
Q ss_pred HHhc---CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 048533 245 YCKK---GMH----YEALAVQDRMEREGISPDIVTYNSLIHGFCRE----GRMREARRLFRDIKGATP-NHVTYTTLIDG 312 (591)
Q Consensus 245 ~~~~---g~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~-~~~~~~~li~~ 312 (591)
+.+. |.. ++.++...+++...+ -|...|+.+...+... +...+|.+.+.+.....| +......+++.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 6554 222 355666656665532 2556676666666552 334556666666554333 35556666666
Q ss_pred HHh
Q 048533 313 YCR 315 (591)
Q Consensus 313 ~~~ 315 (591)
|+.
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-07 Score=81.22 Aligned_cols=107 Identities=8% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH
Q 048533 73 NYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
........+..++..+...|++++|...++++....+.. +....++..++.+|.+.|++++|+..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---------------PYAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------hhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334466777778888888888888888888877654321 11123556677778888888888888
Q ss_pred HHHHhhCCCccCH--HhHHHHHHHHHhc--------CChhHHHHHHHHHHHC
Q 048533 153 FDQMRVHNLMPHL--HACTVLLNSLAKD--------RLTDMVWKVYKKMVQL 194 (591)
Q Consensus 153 ~~~~~~~~~~~~~--~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~ 194 (591)
++++.+..+.... .++..+..++... |+++.|.+.++.+.+.
T Consensus 93 ~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 93 ADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 8888776543121 1344444444433 4455555555555554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-07 Score=84.11 Aligned_cols=185 Identities=9% Similarity=-0.076 Sum_probs=128.6
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|+++.|...|+.+....|..+....++..++.++.+.|++++|+..++++.+..+....
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------ 105 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------------ 105 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------
Confidence 33444555699999999999999988874444567889999999999999999999999886643221
Q ss_pred CCCccchHHHHHHHHHhc--------CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 126 PDGNSHVLSWLVIFYANL--------KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
....+..+..++.+. |++++|++.|+.+.+..+. +...+..+...... ....
T Consensus 106 ---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~----------~~~~------ 165 (235)
T TIGR03302 106 ---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYL----------RNRL------ 165 (235)
T ss_pred ---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHH----------HHHH------
Confidence 112344555556554 7899999999999987654 33333222211110 0000
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC--CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV--RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
......+...+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01112455678888999999999998876521 123467888889999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-06 Score=88.83 Aligned_cols=259 Identities=11% Similarity=0.078 Sum_probs=170.0
Q ss_pred HHHHHHHhccccchhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCc
Q 048533 15 KTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHF 94 (591)
Q Consensus 15 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~ 94 (591)
..+..++--..|.+.--.+. .|+......-|...+...+++++|....+.+++.+|+ ....|..++.++.+.+++
T Consensus 7 ~~~~~~~~ee~~~r~~~~~~--~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~ 81 (906)
T PRK14720 7 DKLTSLLNEEKWTRADANNY--SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPL 81 (906)
T ss_pred HHHHHHhhhhhhhhcccccC--CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcch
Confidence 34444554556775333322 3333334444455665669999999999999988887 888888888899999999
Q ss_pred hHHHHHHHHHHHc-CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 95 KSAQNMLEKIALR-DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 95 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
++|..+ .+... .......+..-+.....+.+.+..++..++.+|-+.|+.++|..+|+++++.++. |..+.|.+..
T Consensus 82 ~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY 158 (906)
T PRK14720 82 NDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLAT 158 (906)
T ss_pred hhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHH
Confidence 998877 44332 2222223333333333345667778889999999999999999999999999866 8899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH
Q 048533 174 SLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE 253 (591)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (591)
.|... +.++|.+++.+.++. +...+++..+.+++.++.... +.+...+..+.
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------- 210 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------- 210 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHH-----------
Confidence 99988 999999998887654 555667777888888877653 11222222222
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 048533 254 ALAVQDRMERE-GISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYC 314 (591)
Q Consensus 254 a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~ 314 (591)
+++... |..--..++-.+-..|...++++++..+++.+.+..| |..+..-++.+|.
T Consensus 211 -----~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 -----RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -----HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222211 1122233444455566666777777777777776444 3455555666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.3e-07 Score=92.17 Aligned_cols=179 Identities=7% Similarity=-0.072 Sum_probs=140.0
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
+.+-+.+.....+...++..-+-.++..-..|+++..++..|+.+..+.|++++|..+++.+.+..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------------- 116 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------------- 116 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------
Confidence 444444444444555544444444433333455689999999999999999999999999998865
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
|++......++..+.+.+++++|+..+++....++. +...+..+..++.+.|++++|..+|+++...++. +..+
T Consensus 117 ----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~ 190 (694)
T PRK15179 117 ----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENG 190 (694)
T ss_pred ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHH
Confidence 556677778888999999999999999999999876 8888999999999999999999999999985543 6788
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHH
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 242 (591)
+..+...+.+.|+.++|...|++....- .+....|+..+
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8899999999999999999999987653 23344444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-06 Score=85.62 Aligned_cols=233 Identities=10% Similarity=0.029 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP-----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYN 342 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (591)
+...|...+......++.++|+++.+++.. +.+ -...|.+++..-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 345677777777777777777777777654 211 13456666666666677777777777777652 1234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML-DQFTYKALIHGFCKA 421 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 421 (591)
.|...|.+.+++++|.++++.|.+. .......|...+..+.+.++.+.|..++.++.+.-++. ......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777888888888888887775 33466677777888888777788888887776652221 233444555556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD--VSVYRALIRRFCKKEKVDYAQR 499 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 499 (591)
|+.+++..+|+..+... +.....|+..++.-.++|+.+.+..+|+++...++.|- -+.|...+..-...|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 88888888888777653 34566777778887888888888888888887766544 3456666665555566555444
Q ss_pred HHHHHH
Q 048533 500 LFNLMQ 505 (591)
Q Consensus 500 ~~~~~~ 505 (591)
+=.++.
T Consensus 1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-07 Score=78.95 Aligned_cols=121 Identities=11% Similarity=0.067 Sum_probs=85.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
++.++++..++.+++..|+ +...|..++.++...|++++|...|+++.+.+ |++..++.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~---~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------------------P~~~~~~~ 111 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------------------GENAELYA 111 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHH
Confidence 5567777777777776666 67777777777777788888777777777654 44555666
Q ss_pred HHHHH-HHhcCC--hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 135 WLVIF-YANLKM--TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 135 ~l~~~-~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
.++.+ |.+.|+ .++|.+++++.++.++. +..++..+...+.+.|++++|+..|+.+.+...+
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 66664 456666 47777777777777665 6667777777777777777777777777766443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-06 Score=80.17 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE 351 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 351 (591)
.-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+..++ +|++..|..+.......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 33556777888888899998888764 5777888888889888888888777774 67888888777776666
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 352 GRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELL 431 (591)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 431 (591)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++++.|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677888877765432 22222223334688888888888877764 346778888888888888999998888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 432 FGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
...+... +-+...|+.+-.+|.+.++..+|...++++.+.+. -+..+|...+-...+.|.+++|.+.+.++.+
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8887643 33467788899999999999999999999888773 3677787888888888999999998888765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-05 Score=83.58 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 303 HVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
...|-..+......++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|+++.+.- -....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 455666666666677777777776666543 11111 1234444444445555566666666665541 12244566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCNKN 457 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 457 (591)
|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-+.|..++.++++.-.+ -........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 6666666666666666666665542 235556666666666666666666666666653211 11223333444445566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHHcCChhHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDS--VIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 532 (591)
+.+.+..+|+..+...++ -...|+.+++.-.++|+.+.++.+|++.+..++.|-. ..|...+..--..|+-+.+
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 666666666666655333 4556666666666666666666666666666555543 3445555444444554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=85.37 Aligned_cols=215 Identities=14% Similarity=0.070 Sum_probs=176.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc
Q 048533 307 TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI 386 (591)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 386 (591)
..+...+...|-..+|..+|+++. .|...+.+|...|+..+|..+..+-+++ +||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456788899999999999998765 4667888999999999999999988884 78888888888776666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 387 GDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677888877765332 22223333445789999999999888754 345678888888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 467 DEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 467 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
...+...+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++...
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999987554 78899999999999999999999999999987 447788988888999999999999999998763
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-06 Score=71.58 Aligned_cols=164 Identities=12% Similarity=-0.003 Sum_probs=96.2
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
|.+..+ ..+...+...|+-+.+..+.........+ +....+..+....+.|++..|...+.+.....+ +|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHH
Confidence 333344 44445555666666666666655444333 445555566666666666666666666665543 366666666
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
.-+|.+.|+++.|..-|.+..+.. +-+....+.+...+.-.|+.+.|..++......+.. |...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 666666666666666666665542 234555666666666666666666666666555322 444555555566666666
Q ss_pred HHHHHHHHH
Q 048533 287 REARRLFRD 295 (591)
Q Consensus 287 ~~A~~~~~~ 295 (591)
++|..+...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 666665543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.8e-07 Score=72.95 Aligned_cols=117 Identities=8% Similarity=-0.003 Sum_probs=85.2
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHH
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFY 140 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (591)
...|+.+++..|+ .+...+.++...|++++|...|+.+...+ |.+..++..++.++
T Consensus 13 ~~~~~~al~~~p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~ 68 (144)
T PRK15359 13 EDILKQLLSVDPE------TVYASGYASWQEGDYSRAVIDFSWLVMAQ------------------PWSWRAHIALAGTW 68 (144)
T ss_pred HHHHHHHHHcCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHH
Confidence 4566777766654 24566778888888888888888877654 44556677777888
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.|++++|+..|+++.+.++. +..++..+..++...|++++|+..|+...+..+. +...+
T Consensus 69 ~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 69 MMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 8888888888888888877654 7777888888888888888888888888776543 34444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-06 Score=72.25 Aligned_cols=179 Identities=16% Similarity=0.057 Sum_probs=143.9
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHH
Q 048533 60 SCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF 139 (591)
Q Consensus 60 A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (591)
+...+-......|+ +..+ ......+...|+-+++..+....... .+.+..+....+..
T Consensus 52 a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~------------------~~~d~~ll~~~gk~ 109 (257)
T COG5010 52 AAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIA------------------YPKDRELLAAQGKN 109 (257)
T ss_pred HHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhcc------------------CcccHHHHHHHHHH
Confidence 44444334444665 6777 77888888889888887777665442 23444455567788
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
..+.|++..|+..+++.....++ |..+|+.+.-+|.+.|+++.|..-|.+..+.-+. +....+.+.-.+.-.|+++.|
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHH
Confidence 99999999999999999988765 9999999999999999999999999999998655 667788888899999999999
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
..++......+ .-|..+-..+.......|++++|.++...-..
T Consensus 188 ~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 188 ETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 99999988764 34777888899999999999999988765443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-06 Score=72.51 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCC--hhhH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA-CCKSSD--VDKV 219 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~--~~~a 219 (591)
.++.++++..+++.++.++. +...|..+...+...|+++.|...|++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45566677777777766655 6777777777777777777777777777776654 56666666654 355555 4777
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777664 335666777777777777777777777777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-05 Score=79.86 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH---
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV--- 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--- 152 (591)
....++..|+..+...|++++|.++++...+..+. ....|..++..|.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------------------~i~~yy~~G~l~~q~~~~~~~~lv~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------------------SISALYISGILSLSRRPLNDSNLLNLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------------------ceehHHHHHHHHHhhcchhhhhhhhhh
Confidence 36777889999999999999999999988876543 333444444455555554444333
Q ss_pred ---------------HHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 153 ---------------FDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 153 ---------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
...+...+ -+..++..++.+|.+.|+.+++..+|+++.+.++. |..+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 22232221 12345555556666666666666666666665533 555566666666655 666
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|.+++.+.... +...+++..+.+++.++....+. +...+..+.+.....-.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~~------------ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHRE------------ 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhhc------------
Confidence 666665555432 44445566666666666554211 22222222221111111
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 298 GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLC 349 (591)
Q Consensus 298 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 349 (591)
...-..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 219 -~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 -FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred -cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 1122334445556777888999999999999987533 5566677777765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-05 Score=82.03 Aligned_cols=149 Identities=7% Similarity=-0.009 Sum_probs=128.8
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.+.+.+...+..|+.+..+.|.+++|+.+++.+.+..+. +..+...++..+.+.+++++|+..+++.....+. +....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 456777889999999999999999999999999998766 7888899999999999999999999999998776 77788
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSL 276 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 276 (591)
..+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+. ..|....|+..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 888899999999999999999999853 445788999999999999999999999998775 23344555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00011 Score=63.62 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCH
Q 048533 314 CRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDT 389 (591)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 389 (591)
.+..+++-|.+.++.|.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 33444444444444444431 33334433333332 22344444455554443 334444444444444445555
Q ss_pred HHHHHHHHHHHHC
Q 048533 390 ASAMKVKNRMLEA 402 (591)
Q Consensus 390 ~~a~~~~~~~~~~ 402 (591)
++|..+++.....
T Consensus 224 eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 224 EEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=71.53 Aligned_cols=105 Identities=12% Similarity=0.002 Sum_probs=88.3
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++......|++++|+..|+++....|. +..++..++.++.+.|++++|+..|+.+...+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------------------ 88 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------------------ 88 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------------------
Confidence 344555669999999999999998776 88999999999999999999999999999865
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
|.++..+..++.++.+.|++++|+..|++.++..+. +...+.....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~ 134 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQN 134 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 556778888999999999999999999999998654 4445544433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=69.72 Aligned_cols=111 Identities=12% Similarity=0.053 Sum_probs=82.9
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh
Q 048533 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN 142 (591)
Q Consensus 63 ~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (591)
.|+.++...|. +......++..+...|++++|...++.+...+ +.++..+..++..|..
T Consensus 5 ~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~la~~~~~ 63 (135)
T TIGR02552 5 TLKDLLGLDSE---QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------------------PYNSRYWLGLAACCQM 63 (135)
T ss_pred hHHHHHcCChh---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHH
Confidence 45556665554 56667778888888888888888888877644 3345667777788888
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.|++++|+..+++..+.++. +...+..+..++...|+++.|...|+...+..
T Consensus 64 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 64 LKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 88888888888888777644 66777777788888888888888888887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00013 Score=63.31 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++.+.+....++...|++++|..+++....
T Consensus 206 T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred ChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333333333333344444444444444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-07 Score=54.34 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048533 508 GILGDSVIYTSLAYAYWRAGEPKACSDILDDM 539 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (591)
|+.||..+|+.++++|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-07 Score=53.60 Aligned_cols=32 Identities=53% Similarity=1.104 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-05 Score=73.90 Aligned_cols=150 Identities=10% Similarity=0.062 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
.....+-.+..+...|++++|+..++.+.+. .|+|+.......+.+.+.++.++|.+.++++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA------------------QPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5677777888889999999999999998874 3567777777888999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+...+. .....-.+..++.+.|++.+|+.+++......+. |...|..|.++|...|+..++.....+.
T Consensus 367 l~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~---------- 434 (484)
T COG4783 367 LALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG---------- 434 (484)
T ss_pred HhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH----------
Confidence 988654 3566778889999999999999999999887665 8899999999999999988887766554
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+.-.|+++.|...+....+.
T Consensus 435 --------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 --------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------HHhCCCHHHHHHHHHHHHHh
Confidence 44568888888888887765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00034 Score=60.28 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=92.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (591)
|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|++++|+++++.+++.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556666666666666666542 2122221111122334566777777777666654 3355555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKN---NEEAL 462 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 462 (591)
.|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666666666555554 34567777777777777777777777777766543 234444444444443332 45566
Q ss_pred HHHHHHHHHCC
Q 048533 463 LKLLDEFVSRG 473 (591)
Q Consensus 463 ~~~~~~~~~~~ 473 (591)
.+++.+.++..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 67777766653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0036 Score=63.82 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHHhccccchhcCCC---CCCCCChHH--HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHH
Q 048533 9 SDTKFIKTISAIMLKGHWAKLLNPN---IASSLTSTA--IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWT 83 (591)
Q Consensus 9 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~ 83 (591)
-.+...+.|...+.++.+...+... +...|...+ +...|..+ +.|+.++|..+++...... +++..+.-.
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~--r~gk~~ea~~~Le~~~~~~---~~D~~tLq~ 82 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF--RLGKGDEALKLLEALYGLK---GTDDLTLQF 82 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--HhcCchhHHHHHhhhccCC---CCchHHHHH
Confidence 3456788888888888777666541 222343333 33333333 4589999998888755422 347777778
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
+-.+|.+.|++++|..+|+++....|. ......+..+|.+-+++.+-.+.--++-+.-++
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-------------------eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk- 142 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-------------------EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK- 142 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 889999999999999999999886532 344555666777777766544444444343222
Q ss_pred CHHhHHHHHHHHHhcC-C---------hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhhHHHHHHH-HhhCCC
Q 048533 164 HLHACTVLLNSLAKDR-L---------TDMVWKVYKKMVQLG-VVANIHLYNVLIHACCKSSDVDKVEKLLCE-MEFKDV 231 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~ 231 (591)
+...+=.+++...+.. . ...|.+.++.+.+.+ .--+..-.......+...|++++|.+++.. ..+.-.
T Consensus 143 ~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~ 222 (932)
T KOG2053|consen 143 RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT 222 (932)
T ss_pred ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence 3344434444444321 1 223556666666554 222222233344556677888999888843 333322
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
+-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 223 ~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 223 SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 33333444566777788888888888888887753
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=74.96 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++..+...++++.|+.+|+++.+..+ .+...++..+...++-.+|++++++.++..+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---------------------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~ 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---------------------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---------------------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 455555555566666666665554331 23333445555555555666666665554433
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
+...+......+.+.++++.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+-.+..++
T Consensus 233 -d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 -DSELLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4555555555566666666666666666655332 34456666666666666666666665554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00012 Score=69.27 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=122.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..+...|++++|+..++.++...+. |...+......+.+.++..+|.+.++.+....+. .....-.+..++.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChH
Confidence 3477789999999999999988665 7777788889999999999999999999987544 3566777889999999999
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|..+++...... +-|+..|..|..+|...|+..++.....+... ..|+++.|...+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHH
Confidence 9999999988774 66899999999999999999999888876643 3688888888887776
Q ss_pred c-CCCChhhH
Q 048533 298 G-ATPNHVTY 306 (591)
Q Consensus 298 ~-~~~~~~~~ 306 (591)
+ .+.+...|
T Consensus 453 ~~~~~~~~~~ 462 (484)
T COG4783 453 QQVKLGFPDW 462 (484)
T ss_pred HhccCCcHHH
Confidence 5 44444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-06 Score=68.36 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=89.6
Q ss_pred CCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc
Q 048533 33 NIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST 112 (591)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 112 (591)
.+...|.+......++..+...|++++|...|+.+....|. +...+..++..+.+.|++++|...++.+...+
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 81 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAALD---- 81 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 34445555555566667777789999999999999887776 78899999999999999999999999988754
Q ss_pred hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 113 PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+.+...+..++..|...|++++|+..|+...+.++
T Consensus 82 --------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 --------------PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred --------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44566788888999999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.001 Score=57.38 Aligned_cols=189 Identities=9% Similarity=-0.001 Sum_probs=127.2
Q ss_pred CChhHHHHHHHHHhhhCCCC--CCCH-HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNY--KHSL-QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.++++-+.++...+...+.. .++. .+|..++-+....|+.+.|...++.+..+-+ .+..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp------------------~S~R 87 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP------------------GSKR 87 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC------------------CChh
Confidence 35666666666655432221 1222 3344677788888999999888888776542 2223
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
+...-+..+-..|++++|+++|+.+++.++. |..++..-+......|+.-.|++-+....+. +..|...|.-+...|.
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 3333344466778899999999999888765 6777777777777777777888777777665 3458888888888888
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG---MHYEALAVQDRMERE 264 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 264 (591)
..|++++|.-.++++.-.. |.+.-.+..+...+.-.| +.+.+.++|.+..+.
T Consensus 166 ~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred hHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8888888888888887653 334444555555544443 456677778777765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=66.09 Aligned_cols=121 Identities=14% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.+++..+...++.+.+..|+.+....+.+.++..+...|++++|...|+.+....+. +. +. ..+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~-l~------------~~a~ 88 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PE-LK------------PLAR 88 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HH-HH------------HHHH
Confidence 477777777788877777763333455566778888888888888888888775421 11 11 1233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 191 (591)
..++.++...|++++|+..++....... ....+.....++.+.|++++|...|+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4567777888888888888866433322 3345566677777788888887777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=62.93 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=56.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|++++|...|..+....|+.+....++..++.++.+.|++++|...|+.+....+.. +....+
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~ 78 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------------PKAPDA 78 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------------CcccHH
Confidence 34667777777777666666544445556666677777777777777776666543211 112344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+..++.++.+.|++++|++.++++.+..+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 55556666666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.4e-05 Score=72.82 Aligned_cols=126 Identities=10% Similarity=0.100 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
...++..+...++++.|+.+|+++.+.+ |+ ....+++.+...++-.+|.+++++..+..+. +......-.+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3345666777899999999999999885 34 4456788888888899999999999976554 67777778888999
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.++++.|+.+.++..... |-+..+|..|..+|...|+++.|+-.++.+.-.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999998873 445669999999999999999999999887643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.3e-05 Score=59.06 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.+++.++..+.+.|++++|...|+.+....+.. +....++..++.++.+.|++++|+..|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456777778888888888888888877654211 11234566677778888888888888888776
Q ss_pred CCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 159 HNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 159 ~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..+.. ...++..+..++.+.|+.+.|...++++.+..+.
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 54331 2445667777777788888888888887776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.008 Score=56.46 Aligned_cols=131 Identities=9% Similarity=0.126 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGMLDAG-FSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
.+|...+..-.+...++.|..+|.+..+.+ +.++..++++++..++ .|+...|.++|+.-+..- +-++.-.+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 345556666667777888888888888877 5677777888877665 567778888887766652 2233333455566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 488 FCKKEKVDYAQRLFNLMQGNGILGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 488 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+..-++-+.|..+|+..+.+ +..+ ..+|..+++.-..-|+...+..+=++|...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 67778888888888866654 3333 467888888888888888887777777663
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00016 Score=59.55 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=56.6
Q ss_pred cCChhhHHHHHHHHhhCCCCcC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRAD---LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 287 (591)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555442 111 11222233455555666666666666655432222 122333455555566666
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
+|+..++...........+.....+|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666655433233334444555556666666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00071 Score=60.87 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+....+..+..+...|++++|+..|+.+....+.+.. ......+++.+|.+.+++++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455556677777788888888888888776543311 1233456777888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNS 174 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~ 174 (591)
.+..+......+...+.+
T Consensus 96 i~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHhCcCCCchHHHHHHHH
Confidence 877554333333333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-06 Score=60.55 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|+++.|+.+|+.+.+..|..+ +...++.++.++.+.|++++|+.++++ ...+ +.+..+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------------------~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------------------PSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------------------HCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------------------CCCHHHH
Confidence 4789999999999999887511 344556799999999999999999988 3322 1223455
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
..++.+|.+.|++++|+++|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 5668889999999999999876
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.2e-05 Score=71.40 Aligned_cols=89 Identities=12% Similarity=-0.061 Sum_probs=75.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|+++.|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++...+ +.+..+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------------------P~~~~a 72 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELD------------------PSLAKA 72 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------cCCHHH
Confidence 458999999999999988887 78888899999999999999999999988765 345567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+..++.+|...|++++|+..|+++++.++.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 778888899999999999999999887644
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.3e-05 Score=66.53 Aligned_cols=87 Identities=11% Similarity=0.012 Sum_probs=52.6
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.++|++|+..|..|++..|. +...|..-+.+|.+.|+++.|++-++..+..+ +.....
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------------------p~yska 151 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSID------------------PHYSKA 151 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------------------hHHHHH
Confidence 346666666666666665554 44445556666666666666666666666543 223345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
|..|..+|...|++++|++.|.+.++.+
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 5566666666666666666666666543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=59.06 Aligned_cols=99 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+.+..+.++..+...|++++|.++|+.+...+ +.+.+.+..|+.++-..|++++|+..|..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56667777788888888888888888877654 334455666777777888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
...++. +..++-.+..++...|+.+.|++.|+..+..
T Consensus 96 ~~L~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 96 AQIKID-APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777754 6777777777888888888888877776654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0017 Score=60.13 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=44.7
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
-....+.+.+++..|+..+..|++..|. +...|..-+..+..-|+|++|..-.+.-.+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3455556668899999999999998887 566566788888999999998776655443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=55.61 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+...|++++|...++.+.+..+ .+..++..++..+...+++++|.+.++...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP------------------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555566666555555544321 111334444555555555555555555555543
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
+. +..++..+...+...|+++.|...+....+
T Consensus 65 ~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 65 PD-NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred Cc-chhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 32 333444555555555555555555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.021 Score=56.82 Aligned_cols=221 Identities=10% Similarity=0.032 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
.+.|.++.+. +| .++.|-.++....+.-.++.|...|-+....... .+.+.+-..+... .-..-
T Consensus 679 ledA~qfiEd----nP----HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi---k~vkrl~~i~s~~-----~q~ae 742 (1189)
T KOG2041|consen 679 LEDAIQFIED----NP----HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI---KLVKRLRTIHSKE-----QQRAE 742 (1189)
T ss_pred hHHHHHHHhc----CC----chHHHHHHHHHHHHHHhhhhHhhhhhhhccccch---hHHHHhhhhhhHH-----HHhHh
Confidence 4666666544 44 3566666666555666677777766555432111 1111111111100 00111
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccC
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV--ANIHLYNVLIHACCKSS 214 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g 214 (591)
+.+| -|++++|.++|-.|.+++. .+....+.|+|-.+.++++.--. +.. .-...|+.+...+....
T Consensus 743 i~~~--~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 743 ISAF--YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred Hhhh--hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHH
Confidence 2222 3788888888887776543 24556667777766666543211 110 11346777777777777
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+++|.++|..-... ...+.++.+...+++-..+...+.+ +....-.+.+++.+.|..++|.+.+-
T Consensus 811 ~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 777777777654321 2345566666666655555444432 44455556666777777777766665
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 295 DIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 295 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+... |. ..+..|...+++.+|.++-
T Consensus 877 r~s~--pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 877 RRSL--PK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hccC--cH-----HHHHHHHHHHHHHHHHHHH
Confidence 5431 21 2234455555555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0002 Score=64.80 Aligned_cols=92 Identities=7% Similarity=-0.029 Sum_probs=58.8
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++++|+..|+.+++.+|+.+....+++.++.+|...|++++|...|+.+.+..+. .+..++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------------s~~~~dAl 220 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------------SPKAADAM 220 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CcchhHHH
Confidence 366777777777777767764444566667777777777777777777776654332 12334455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
..++.+|...|+.++|..+|+.+.+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556666666777777777777666653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0013 Score=59.17 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|++++|...|+.+....|..+....+...++.++.+.+++++|+..+++..+..|..
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 35999999999999999888743334445788999999999999999999999876543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00053 Score=58.46 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....+..++..+...|++++|...|+++....+.+ +....++..++..|.+.|++++|+..++++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---------------NDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------------chHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567788888889999999999998887643221 112346777888888999999999999988
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
.+..+. +...+..+...+...|+...+.
T Consensus 99 l~~~p~-~~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 99 LELNPK-QPSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHhCcc-cHHHHHHHHHHHHHcCChHhHh
Confidence 887554 5666777777777777654433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00056 Score=55.24 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+.+..+.-.+...|++++|.++|+.+...++. +..-|..|.-++-..|++++|+..|......++. +...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34445555666778888888888877777665 6667777777777778888888888877777654 666666677777
Q ss_pred HccCChhhHHHHHHHHhhC
Q 048533 211 CKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~ 229 (591)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7778888777777776553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00063 Score=60.79 Aligned_cols=118 Identities=10% Similarity=-0.054 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
++.-..-.+..+..+|+ +.+-|..|+.+|...|++..|..-|++..+.. +++++++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~------------------g~n~~~~~g~ 196 (287)
T COG4235 138 MEALIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLA------------------GDNPEILLGL 196 (287)
T ss_pred HHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC------------------CCCHHHHHHH
Confidence 33444444444555666 77777777777777777777777777776644 4455555555
Q ss_pred HHHHHhcC---ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 137 VIFYANLK---MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 137 ~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
+.++..+. +-.++..+|+++++.++. |+.+...|...+...|++.+|...|+.|.+...
T Consensus 197 aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 197 AEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 55444322 345677777777777655 666777777777777777777777777776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00095 Score=58.53 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+....+..+..+...|++.+|+..|+.+....+.+ +..+.+...++.+|.+.|++++|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s---------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS---------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS---------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666667777777777777777776654332 223345556667777777777777777776
Q ss_pred hhCCCc
Q 048533 157 RVHNLM 162 (591)
Q Consensus 157 ~~~~~~ 162 (591)
++..+.
T Consensus 69 i~~yP~ 74 (203)
T PF13525_consen 69 IKLYPN 74 (203)
T ss_dssp HHH-TT
T ss_pred HHHCCC
Confidence 665443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=3e-05 Score=45.68 Aligned_cols=33 Identities=52% Similarity=0.706 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=45.81 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT 547 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 547 (591)
+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466667777777777777777777776666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.027 Score=53.24 Aligned_cols=446 Identities=12% Similarity=0.090 Sum_probs=222.8
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCC--CCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYK--HSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
.+.++...|.++|.+......+.+ -..+++. .++.+|.. ++.+.....+-...+.. +.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~------------------~~ 77 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF------------------GK 77 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc------------------CC
Confidence 445788889999888765432211 1123344 35555554 34444444444443322 11
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhC--CCcc------------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMP------------HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.+....+-...+.+.+.+|++.+..-..+ +..| +...-+..++++...|.+.+++.+++++...
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 2222222333466789999999888765554 2221 1122256778888999999999888887654
Q ss_pred ----CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 195 ----GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 195 ----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
....+..+|+.++-.+++ .+|-++.+.. ...-+. |-.++..|.+. ...++.-.=..+.|.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd-yYemilfY~kk------i~~~d~~~Y~k~~pe 222 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD-YYEMILFYLKK------IHAFDQRPYEKFIPE 222 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH-HHHHHHHHHHH------HHHHhhchHHhhCcH
Confidence 344788888886665553 3333332210 011111 22233333221 011111000112233
Q ss_pred HHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 048533 270 IVTYNSLIHGFCREG-----RMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP----GVV 339 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~ 339 (591)
...+..++....-.. -+-.+.+.|+.-. ..|+ ......+...+.. +.+++..+.+.+....+.+ =..
T Consensus 223 eeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~ 299 (549)
T PF07079_consen 223 EELFSTIMQHLFIVPKERLPPLMQILENWENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELID 299 (549)
T ss_pred HHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333222111 1222233332211 2333 2223333333333 4444444444433321111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 048533 340 TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC-------NTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQ 408 (591)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 408 (591)
++..++....+.++...|.+.+.-+.-. .|+...- ..+-+..+. .-+...-+.+|+.+....+ |.
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--Dr 375 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DR 375 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cH
Confidence 5666666666777777776666655443 2222111 111111111 1122233445555544432 22
Q ss_pred -HHHHHH---HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHh---cCCHHHHHHHHHHHHHCCCCC
Q 048533 409 -FTYKAL---IHGFCKAKE-MDIAKELLFGMLDAGFSPSYCSYSW----LVDGYCN---KNNEEALLKLLDEFVSRGLCV 476 (591)
Q Consensus 409 -~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~a~~~~~~~~~~~~~~ 476 (591)
.....+ ..-+.+.|. -++|..+++.+++.. +-|..+-+. +=..|.+ ...+..-..+-+-+.+.|+.|
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 112222 223445555 888999999888742 223333222 2233332 233444445545555667665
Q ss_pred C----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 477 D----VSVYRALIRR--FCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 477 ~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+.-
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3 3445555554 3568999999888777776 688999999999999999999999999887544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0039 Score=57.98 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHcc-CChhhHHHHHHHHhhC----CCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HH
Q 048533 206 LIHACCKS-SDVDKVEKLLCEMEFK----DVR-ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-----PDIV-TY 273 (591)
Q Consensus 206 ll~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~ 273 (591)
+...|... |+++.|.+.|++.... |.+ .-..++..+...+.+.|++++|.++|++....... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34455555 6666666666665331 100 01224455666677777777777777776654221 1121 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATPNH------VTYTTLIDGYCR--ANDLEEALRLREVMA 330 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~--~g~~~~a~~~~~~~~ 330 (591)
...+-++...|++..|.+.+++.....|+. .....++.++-. ...++.+..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233345555677777777777766544421 223344444432 233555555555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00028 Score=53.15 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..+...|++++|+..++++.+..+. +...+..+...+...++++.|.+.++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445666677788888888888887776543 4456667777777777777777777777766543 44566666667777
Q ss_pred cCChhhHHHHHHHHhhC
Q 048533 213 SSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~ 229 (591)
.|+++.|...+......
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00034 Score=67.18 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA--GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCS 445 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 445 (591)
+.+.+...+..+++.+....+.+.+..++-+.... ....-+.|..++++.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777777654 1222234556778888888888888888887777888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 446 YSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK 491 (591)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 491 (591)
++.|++.+.+.|++..|.++...|...+...++.++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777766555666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00046 Score=66.26 Aligned_cols=96 Identities=9% Similarity=-0.095 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..+..+...|++++|+..|++++..+ +.+..++..++.+|.+.|++++|+..++++++.++.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~------------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD------------------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34566777888888888888887754 344556777777888888888888888888887654
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+...|..+..+|...|+++.|+..|+...+.++.
T Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 69 -LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 6677778888888888888888888888876543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00035 Score=59.38 Aligned_cols=103 Identities=8% Similarity=-0.043 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL 136 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (591)
+..+.+.+....+..+. ......+..++..+...|++++|+..|+++....+. +.....++..+
T Consensus 15 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~~~~~~~~~l 78 (168)
T CHL00033 15 FTIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---------------PYDRSYILYNI 78 (168)
T ss_pred cccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---------------chhhHHHHHHH
Confidence 34444444443332322 223455677888888889999999999888764321 11123466778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 137 VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 137 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
+.+|...|++++|+..+++..+..+. ...++..+...+.
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 88888889999999888888876543 4455666666665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.1e-05 Score=44.75 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (591)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00052 Score=53.45 Aligned_cols=109 Identities=12% Similarity=0.024 Sum_probs=67.1
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
..+...|++++|+.+|+.++...........++..++..+...|++++|..++++.....+. .+.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~---------------~~~ 73 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD---------------DEL 73 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccc
Confidence 33445588888888888887754442333566777888888888888888888877664321 011
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
+..+...+..++...|+.++|++.+-..... +...|..-|..|.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2233334455677778888888877665542 3334444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.3e-05 Score=44.66 Aligned_cols=33 Identities=36% Similarity=0.582 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 268 (591)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.017 Score=53.90 Aligned_cols=258 Identities=11% Similarity=-0.045 Sum_probs=143.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..+.+..++.+|+..+..+++..+. +...|..-+..+...++++++.--.+.-.+.... ....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 3477788899999999999988776 5666766666677777777776666554443221 1112222233333333333
Q ss_pred hHHHHHH---------------HHhhCC-CCcCcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 218 KVEKLLC---------------EMEFKD-VRADLFTYNTL-IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGF 280 (591)
Q Consensus 218 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 280 (591)
+|.+.++ .+.... -+|....|..+ ..++.-.|++++|.+.-....+.... +......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3333322 111111 11222333333 24555678888888777666654211 222222222334
Q ss_pred HhcCCHHHHHHHHHHhhcCCCChhhHH-------------HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKGATPNHVTYT-------------TLIDGYCRANDLEEALRLREVMAAKG---VYPGVVTYNSI 344 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l 344 (591)
.-.++.+.|...|.+.....|+...-. .-..-..+.|.+..|.+.|.+.+... ..|+...|-..
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 456778888888888877666543221 12233456677777777777776542 33344445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTC---NTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
.....+.|+..+|+.--+...+. |..-. ..-..++.-.+++++|.+-+++..+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566677777777776666654 33222 22223445566777777777766554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00059 Score=58.16 Aligned_cols=94 Identities=7% Similarity=-0.095 Sum_probs=69.2
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
.......++..+...|++++|+..|+.+.+..|+.+....++..++.++.+.|++++|+..++++....+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------- 103 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP---------- 103 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------
Confidence 3444556666677779999999999999986665222356788999999999999999999999887542
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHH
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQ 151 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 151 (591)
.+...+..++.+|...|+...+..
T Consensus 104 --------~~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 104 --------KQPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred --------ccHHHHHHHHHHHHHcCChHhHhh
Confidence 334455566777777777544443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00036 Score=66.97 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=95.4
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL--GVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYN 239 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (591)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 346666777778777777888888888877654 222234556788999999999999999999888899999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE 283 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 283 (591)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988887776666767776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.8e-05 Score=54.99 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=54.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHHcCChhHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLC-VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG-DSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
.|+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|..++++ .+ ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 56778888888888876442 2445555678888888888888888877 32 222 2344556678888888888888
Q ss_pred HHHHH
Q 048533 534 DILDD 538 (591)
Q Consensus 534 ~~~~~ 538 (591)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88775
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.055 Score=53.96 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=143.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
..=.+|.++|++... ++..++.... +...-..=+. +--|.+++|.++|-++-+++ ..+..+.+.|
T Consensus 710 tAE~AFVrc~dY~Gi-k~vkrl~~i~---s~~~q~aei~--~~~g~feeaek~yld~drrD---------LAielr~klg 774 (1189)
T KOG2041|consen 710 TAEHAFVRCGDYAGI-KLVKRLRTIH---SKEQQRAEIS--AFYGEFEEAEKLYLDADRRD---------LAIELRKKLG 774 (1189)
T ss_pred hHhhhhhhhccccch-hHHHHhhhhh---hHHHHhHhHh--hhhcchhHhhhhhhccchhh---------hhHHHHHhhh
Confidence 344578889988643 3333433321 1111122222 23489999999998886653 2467888899
Q ss_pred ChhhHHHHHHHHhhCC-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKD-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLF 293 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (591)
++-...++++.-.... -..-..+|+.+...+.....+++|.+.|..-.. ....+.++.+..++++-..+-
T Consensus 775 DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la 845 (1189)
T KOG2041|consen 775 DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLA 845 (1189)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHH
Confidence 9988888776532210 011245789999999999999999999875432 123577788888888777776
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 048533 294 RDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN 373 (591)
Q Consensus 294 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 373 (591)
..+. .+....-.+..++.+.|.-++|.+.|-+. + .|. ..+..|...+++.+|.++-+...-. ..
T Consensus 846 ~~Lp---e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~----qv 909 (1189)
T KOG2041|consen 846 RTLP---EDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLP----QV 909 (1189)
T ss_pred HhcC---cccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccch----hH
Confidence 6664 45666777888888899988888776332 2 122 3445666777777777766543211 11
Q ss_pred HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 374 VT--------------CNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 374 ~~--------------~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+ ..--|..+.+.|+.-.|-+++.+|.+
T Consensus 910 ~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 910 QTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 11 12235667778877777777777754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=60.70 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHhhC----CCc-cCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcc
Q 048533 145 MTQDGLQVFDQMRVH----NLM-PHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQL----GVV-ANIHLYNVLIHACCKS 213 (591)
Q Consensus 145 ~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~ 213 (591)
++++|+..++++... |-. .-...+..+...|... |+++.|++.|++..+. +.. .-..++..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 666666666555432 211 0123455566667666 7888888888877643 211 0124566777888899
Q ss_pred CChhhHHHHHHHHhhCCCCcC-----cc-cHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhc
Q 048533 214 SDVDKVEKLLCEMEFKDVRAD-----LF-TYNTLIALYCKKGMHYEALAVQDRMEREG--ISPD--IVTYNSLIHGFCRE 283 (591)
Q Consensus 214 g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~ 283 (591)
|++++|.++|+++...-...+ .. .+...+-++...|+...|...+++..... +..+ ......|+.++-..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999999999998876432211 11 23334456667889999999999887652 2222 33455666666542
Q ss_pred --CCHHHHHHHHHHhh
Q 048533 284 --GRMREARRLFRDIK 297 (591)
Q Consensus 284 --g~~~~A~~~~~~~~ 297 (591)
..+..++.-|+.+.
T Consensus 249 D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -CCCHHHHCHHHTTSS
T ss_pred CHHHHHHHHHHHcccC
Confidence 34666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.7e-05 Score=52.20 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=51.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
+..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|...|+.+.+..|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34455569999999999999998876 899999999999999999999999999988664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=57.56 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH
Q 048533 86 HILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL 165 (591)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 165 (591)
.-+.+.++|++|+..|..+++.. |.++..|..-+.+|.+.|+++.|++=.+..+..++. ..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~------------------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-ys 149 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD------------------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YS 149 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC------------------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HH
Confidence 34444555555555555555433 334444445555555555555555555555555433 34
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 166 HACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
.+|..|..+|...|++++|++.|.+.+.
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 4555555555555555555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00078 Score=57.12 Aligned_cols=96 Identities=13% Similarity=0.251 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH----------------cCChhHHHHH
Q 048533 477 DVSVYRALIRRFCK-----KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR----------------AGEPKACSDI 535 (591)
Q Consensus 477 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------------~g~~~~A~~~ 535 (591)
+-.+|..+++.|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+=+ -.+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 34444444444432 24444444455555555555555555555554432 1234568999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 536 LDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
+++|...|+.||..++..|++.|++.+-..+.+|.+|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmm 162 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMM 162 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999999999999998888777766
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0035 Score=54.94 Aligned_cols=59 Identities=14% Similarity=-0.021 Sum_probs=49.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|++.+|+..|+.+....|..+....+.+.++.++.+.|++++|+..++..++..|.+
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 35999999999999999999877778888999999999999999999999998876543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0006 Score=57.93 Aligned_cols=68 Identities=9% Similarity=-0.242 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.....++..+...|++++|+..|+.++...|+......++..++.++...|++++|+..++++....+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33445566666679999999999999887665222346888999999999999999999999987643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=61.32 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK-AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+...|......-.. .++.+.|..+|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2233444444444222 45555577777766653 34455566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
+...++.+.|..+|++.+.. +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666777777777666654 2222 236666666666666666666666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.033 Score=48.65 Aligned_cols=251 Identities=15% Similarity=0.107 Sum_probs=142.1
Q ss_pred CCCHHHHHH-HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc--chHHHH-HHHHHhcCChHHHH
Q 048533 75 KHSLQSHWT-MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS--HVLSWL-VIFYANLKMTQDGL 150 (591)
Q Consensus 75 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~A~ 150 (591)
+++.-.+|+ -..++.+...+++|..-++.....+.+ .-.++..-..+.+-...- -...++ +.+....|++.+.+
T Consensus 65 t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~p--dl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesL 142 (366)
T KOG2796|consen 65 TTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQP--DLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESL 142 (366)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCc--ceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHH
Confidence 445555665 477888999999988777665543211 000010000000000000 011111 22333445555555
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 230 (591)
.-+..+... ....++.+-.....+.-++.+++-. ..+-+.++..+.-.|.+.-...++.++++++
T Consensus 143 dRl~~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 143 DRLHKLKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 444433321 1122222222223344455554432 2344567777777888888888888888877
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHhhcCCC-Chh
Q 048533 231 VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN-----SLIHGFCREGRMREARRLFRDIKGATP-NHV 304 (591)
Q Consensus 231 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 304 (591)
.+.++.....|++.-.+.|+.+.|...|++..+..-..|..+++ .....|.-.+++..|...+.++....| |..
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 66777778888888888899999999888776543233333333 333445566788888888888776444 444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSI 344 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 344 (591)
.-|.-.-+..-.|+..+|++.++.|... .|...+-+.+
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4555555555578888888888888876 4444444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=49.02 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 308 TLIDGYCRANDLEEALRLREVMAAKGV-YPGVVTYNSILRKLCKEGR--------IRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 308 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 7777777777777665432 2334455555555555555555555
Q ss_pred HHHHH
Q 048533 379 LINAY 383 (591)
Q Consensus 379 li~~~ 383 (591)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00018 Score=49.66 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=36.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..+.+.|++++|+..|+.+.+.. |.+..++..++.++.+.|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666667777776666666543 3445566666666666666666666666666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=50.49 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.|++++|+..|+.+....|+ +..++..++.++.+.|++++|.++++++....+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 48999999999999998887 899999999999999999999999999988764
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=60.93 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK-DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+|..++....+.+..+.|..+|.++++.+. .+...|...+..-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 355566666777777778888877775432 244445444444233 55666677787777765 333667777777777
Q ss_pred HccCChhhHHHHHHHHhhCCCCcCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 211 CKSSDVDKVEKLLCEMEFKDVRADL---FTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.+.|+.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 36667777666777777777776666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0056 Score=47.74 Aligned_cols=105 Identities=23% Similarity=0.219 Sum_probs=68.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVD--VSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGD----SVIYTSLAYA 522 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~ 522 (591)
+..++-..|+.++|+.+|++....|...+ ...+-.+...+...|++++|..++++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34556677888888888888887765533 345566777777888888888888877764 122 2333444557
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
+...|+.++|...+-..... +...|..=|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77788888888877666552 3335655555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=49.40 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQM 156 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~ 156 (591)
..++..++..+.+.|++++|+..|+++.+.+ |.+..++..++.+|...| ++++|++.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4556666777777777777777777766654 334455666666666666 567777766666
Q ss_pred hhC
Q 048533 157 RVH 159 (591)
Q Consensus 157 ~~~ 159 (591)
++.
T Consensus 65 l~l 67 (69)
T PF13414_consen 65 LKL 67 (69)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0098 Score=48.90 Aligned_cols=147 Identities=8% Similarity=0.011 Sum_probs=98.2
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
||+.++.--......-| ++.-...++.++.+.|++.+|...|++....- +..++..+..
T Consensus 71 dP~R~~Rea~~~~~~Ap----Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-----------------fA~d~a~lLg 129 (251)
T COG4700 71 DPERHLREATEELAIAP----TVQNRYRLANALAELGRYHEAVPHYQQALSGI-----------------FAHDAAMLLG 129 (251)
T ss_pred ChhHHHHHHHHHHhhch----hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-----------------cCCCHHHHHH
Confidence 56655555544444333 45556678888899999999999988876532 2345556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
+.++....+++..|...++.+.+.++. .+..+...+.+.+...|.+..|...|+.....-+.|.... .....+.+.|
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qg 207 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQG 207 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhc
Confidence 777788888888888888888776531 1233566777888888888888888888887644433333 3445566777
Q ss_pred ChhhHHHHHHH
Q 048533 215 DVDKVEKLLCE 225 (591)
Q Consensus 215 ~~~~a~~~~~~ 225 (591)
+.+++..-+..
T Consensus 208 r~~ea~aq~~~ 218 (251)
T COG4700 208 RLREANAQYVA 218 (251)
T ss_pred chhHHHHHHHH
Confidence 66665544333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=57.16 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
|++..|...|...++..|+.+....+++-|+..+...|++++|...|..+.+..+. .+.-++.+.
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---------------s~KApdall 219 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---------------SPKAPDALL 219 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---------------CCCChHHHH
Confidence 55666666666666666665555555555666666666666666666555554321 233334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.++....+.|+.++|...|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555566666666666555554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0023 Score=47.87 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKI-APDNVTCNTLINAYCKIG--------DTASAMKVKNRMLEAGLMLDQFTYKA 413 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (591)
..|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++...+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777766532 23345555556655556666666665
Q ss_pred HHHHHH
Q 048533 414 LIHGFC 419 (591)
Q Consensus 414 l~~~~~ 419 (591)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=49.78 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcC
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRD 108 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 108 (591)
+...++..+...|++++|+..|+.+++..|+ +..++..++.++.+.| ++++|++.++++++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3445566677789999999999999999887 8899999999999999 7999999999998765
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0079 Score=60.57 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
++..|..+.-.....|++++|...++++.+. .|+...|..+..++...|++++|...++++.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455665655555667777777777777764 3466667777777777777777777777776643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.042 Score=48.36 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..-+....+.|++++|.+.|+.+..+.+.+ +-.+.+...++-++.+.+++++|+..+++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s---------------~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS---------------PYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34555666777788899999999999888766543 223455566777888899999999999998
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-------RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFK 229 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 229 (591)
.+..+......|...|.+++.- +|...+.+.+..+.+ ++.-|=...-...|..-+..+...
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA 165 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH
Confidence 8876554445566666666532 222222222222221 111111111111111111111100
Q ss_pred CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 230 DVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD---IVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 230 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
=..-=..+...|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+....|+.
T Consensus 166 ----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 166 ----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred ----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 0000012445566777777777777777665 2111 2334455666667777776666666555445544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.16 Score=52.11 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=123.1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..-+..+.+...|+-|+.+-+.-.. +..... .+...-+..+.+.|++++|...|-+.+.. .
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~-------------~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-----DEDTLA-------------EIHRKYGDYLYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHH-------------HHHHHHHHHHHhcCCHHHHHHHHHHHccc-C
Confidence 3456777888888888887544221 112222 33344555678899999999988777654 1
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL 241 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (591)
.| ..++.-+........-...++.+.+.|.. +...-..|+.+|.+.++.++..++.+... .|.. ..-....
T Consensus 399 e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~a 469 (933)
T KOG2114|consen 399 EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETA 469 (933)
T ss_pred Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHH
Confidence 22 24556666666677777888899999987 66677789999999999999888887765 3321 2235567
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+..+.+.+-.++|.-+-.+... .......++ -..+++++|++++..++
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7778888888888776655443 334444433 45789999999998874
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.049 Score=47.65 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=117.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
+......+..+++|++=.. ...+.+++.+.-.|.+.-....+.+..+.+.+.+......+.+.-.+.|+.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a 231 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTA 231 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHH
Confidence 3333344556666654332 356778888888899999999999999988777888889999999999999999
Q ss_pred HHHHHHHhhCCCCcCcccHHHHH-----HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLI-----ALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
..+|+...+..-+.|..+.+.++ ..+.-.+++.+|...+.++...+.. |+...|.-.-+..-.|+...|++.++
T Consensus 232 ~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 232 EKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999877654455555555544 3455677888999999888776433 55555555555555789999999999
Q ss_pred HhhcCCCChhhHHH
Q 048533 295 DIKGATPNHVTYTT 308 (591)
Q Consensus 295 ~~~~~~~~~~~~~~ 308 (591)
.+....|...+-+.
T Consensus 311 ~~~~~~P~~~l~es 324 (366)
T KOG2796|consen 311 AMVQQDPRHYLHES 324 (366)
T ss_pred HHhccCCccchhhh
Confidence 99887776655443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00014 Score=41.32 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0076 Score=60.66 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
...|..+.-.....|++++|...+++.....|+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344544444444556666666666666655555555666666666666666666666665554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00048 Score=48.07 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=33.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+.|++++|++.|+++...+ |.+..+...++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35666677777776666644 3344555566666677777777777766666653
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0018 Score=59.91 Aligned_cols=133 Identities=15% Similarity=0.075 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCh
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMA----AKGVY-PGVVTYNSILRKLCKEGRIRDANRLLNEMNE----KK-IAPDN 373 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 373 (591)
.+|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777788888876644322 22211 1234567777788888888888888875432 22 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEA-----GLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+..+|.+.|.-..++++|+.++.+-... ...-....+.+|..+|...|..++|..+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45667778888778888888877654321 1122456788888888888888888877666543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00022 Score=40.46 Aligned_cols=29 Identities=45% Similarity=0.901 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKG 333 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (591)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0033 Score=58.24 Aligned_cols=133 Identities=16% Similarity=0.058 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLE----AGLM-LDQFTYKALIHGFCKAKEMDIAKELLFGMLD----AGF-SPSY 443 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 443 (591)
..|..|.+.|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455566666667777777766544321 1211 1234566677777777888888777765442 221 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSR-----GLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
....+|...|.-..+++.|+.++++-... +..-...++.+|..+|...|..++|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445666666677777777777654321 1112456677788888888888888777766543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0044 Score=56.25 Aligned_cols=104 Identities=11% Similarity=0.006 Sum_probs=76.7
Q ss_pred HHHHHHHHH-HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 79 QSHWTMIHI-LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 79 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..+.. +.+.|++++|+..|+...+..|.+ +..++++.|++.+|...|++++|+..|+.+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---------------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---------------TYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444 466799999999999988865432 2234678899999999999999999999998
Q ss_pred hCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 158 VHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 158 ~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+..+. ....++..+..++...|+.+.|..+|+.+.+..+.
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 75332 13455666677788889999999999988876543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.2 Score=50.70 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 410 TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC 489 (591)
Q Consensus 410 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 489 (591)
+.+--+.-+...|+..+|.++-.+.. -|+...|..-+.+++..+++++-+++-+... .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445555667788888877776664 4777777777888888888877666654433 2344667778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHH
Q 048533 490 KKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDIL 536 (591)
Q Consensus 490 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (591)
+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 888888888877665421 15677888888888877653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.059 Score=44.52 Aligned_cols=135 Identities=10% Similarity=-0.016 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC-VDVSVYRA 483 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 483 (591)
.|+...-..|..+..+.|+..+|...|++....-+.-|....-.+.++....+++..|...++.+.+.++. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666677777888888888888888776555667777777777777788888888888887765321 02223345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+.+.+...|.+..|...|+..... -|+...-......+.++|+..++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 667778888888888888888874 45655555555667777777766554444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0078 Score=51.24 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=66.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 291 RLFRDIKGATPNHVTYTTLIDGYCR-----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
..|+.......+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F 112 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF 112 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh
Confidence 3444443345566666666666653 46777777778888888888888888888887654 2211 111111111
Q ss_pred hCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 366 EKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 366 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
-+ | ..+.+-|++++++|...|+-||..++..++..+.+.+
T Consensus 113 ~h---------------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MH---------------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cc---------------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 10 0 1233445666666666666666666666666666544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00087 Score=47.54 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=53.2
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
..++.+.++++.|+..++.+++..|. +...+...+.++.+.|++.+|...|+++.+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45566779999999999999998887 888999999999999999999999999998765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=52.48 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS---DVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
|...|-.|..+|...|+++.|...|....+...+ +...+..+..++.... ...++..+|+++...+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4444444444444444444444444444444322 3333333333332221 1233444444444432 223334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 048533 241 LIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0095 Score=52.77 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=83.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+..+..+.+.|+|..|.+.|..-.+..|. .+-.++.+.||+.++..+|++++|..+|..+.+.-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 456677788899999999999988876653 34567899999999999999999999999998864
Q ss_pred Cc-c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 161 LM-P-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 161 ~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
++ | -..++-.|..+..+.|+.+.|..+|+++.+.-+.
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 33 1 2467888888999999999999999999887544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.023 Score=45.26 Aligned_cols=59 Identities=7% Similarity=-0.068 Sum_probs=54.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
..|+++.|.+.|+.+..+.|..+....+...++.++.+.|++++|+..+++.++.+|.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 35999999999999999999988888999999999999999999999999999987643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.27 Score=46.21 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555544433331 24555555555555555555554443221 11223455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 457 NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
|+..+|..++..+ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 5555555554441 1 12334445555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.065 Score=52.99 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 256 AVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 256 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
.-+++++++|-.|+... +...++-.|++.+|-++|.+.
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 34566777777777654 334455577788888877654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.026 Score=46.04 Aligned_cols=122 Identities=9% Similarity=0.045 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhccccchhcCCCCCCCCChHHHHHH---HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 048533 11 TKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKV---LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHI 87 (591)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~ 87 (591)
..++..|...+..|.-.. ....+++..+..+ --.++ ..|+++.|..+|+.+...+|. +.+-+..|+.+
T Consensus 10 ~~~~~~i~~al~~G~tlk-----~l~gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~ 80 (165)
T PRK15331 10 ERVAEMIWDAVSEGATLK-----DVHGIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAV 80 (165)
T ss_pred HHHHHHHHHHHHCCCCHH-----HHhCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHH
Confidence 345566666655542211 1123334433333 22333 458899999999988776654 56656678888
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
+...+++++|+..|......+ ..++......+.+|...|+.++|...|+.....
T Consensus 81 ~Q~~k~y~~Ai~~Y~~A~~l~------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 81 CQLKKQFQKACDLYAVAFTLL------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcc------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 888899999988887765533 334455667788888888888898888888773
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.025 Score=52.95 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=91.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHc----CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALR----DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.-+..|.+.|+|..|...|+++... ...+...- .... .....++..++.+|.+.+.+.+|++..++.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~-~~~~------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQ-KKAE------ALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHH-HHHH------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3466889999999999999987652 11111000 0000 01113566677788888888888888888888
Q ss_pred CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhh-HHHHHHHHhh
Q 048533 159 HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDK-VEKLLCEMEF 228 (591)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~ 228 (591)
.+.. |..++-.-..++...|+++.|+..|+.+.+..+. |..+-+.++.+-.+...... ..++|..|..
T Consensus 286 ~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 286 LDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred cCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7755 7778878888888888888888888888887554 55555666655555544433 3566776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.36 Score=46.09 Aligned_cols=129 Identities=9% Similarity=-0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
+.+...+.+.+.. ++.+.-........+..| ++.....-.+-..-+.+.+.+|.+.+..=..+-....+...+.-+
T Consensus 46 Evl~grilnAffl-~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 4444444444432 444443333333333344 355555556667789999999999887654431111112222111
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc----cCHHhHHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM----PHLHACTVLLNSLA 176 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~ 176 (591)
+.. -++...-...+..+...|++.+++.+++++...=.+ =+..+|+.++-.+.
T Consensus 122 ~~l---~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 122 QQL---FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHH---hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 100 011122233567788999999999999998765332 46778877554444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.042 Score=45.26 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYR 552 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 552 (591)
+...++..+...|++++|.++.+.+.... +.+...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45666777788899999999999998853 34668899999999999999999999988865 38888877643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.66 Score=48.61 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 56 IPSLSCAFFKWAESAVPNYKHS--LQSHWTMIHILT-KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
-...|+..++.+.+ .+..++. ..++..++.+|. ...++++|...+++.....-. ..+..- .-..
T Consensus 36 LI~~ai~CL~~~~~-~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~----------k~~~ 102 (608)
T PF10345_consen 36 LIATAIKCLEAVLK-QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL----------KFRC 102 (608)
T ss_pred HHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH----------HHHH
Confidence 35677888888875 2333333 355667888887 679999999999987654322 111110 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC----ccCHHhHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNL----MPHLHACTVL-LNSLAKDRLTDMVWKVYKKMVQLG---VVANIHLYN 204 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 204 (591)
-..++..|.+.+... |...+++.++.-- .+-...|..+ +..+...+++..|.+.++.+.... ..|...++-
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 334577777777666 9998888776421 2223334444 333333479999999998887543 233444555
Q ss_pred HHHHHHH--ccCChhhHHHHHHHHhhCC---------CCcCcccHHHHHHHHH--hcCChhHHHHHHHHHH
Q 048533 205 VLIHACC--KSSDVDKVEKLLCEMEFKD---------VRADLFTYNTLIALYC--KKGMHYEALAVQDRME 262 (591)
Q Consensus 205 ~ll~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 262 (591)
.++.+.. ..+..+.+.+.++++.... ..|...+|..+++.++ ..|+++.+.+.++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555443 4465667777776663321 1234556666665544 5677667766655553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.043 Score=44.83 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=68.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChh
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPK 530 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 530 (591)
.-+...|++++|..+|+-+.-.++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345788888888888888776654 677778888888888888888888887766542 35555667788888888888
Q ss_pred HHHHHHHHHHHC
Q 048533 531 ACSDILDDMYRR 542 (591)
Q Consensus 531 ~A~~~~~~~~~~ 542 (591)
.|...|+...++
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 888888888874
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.37 Score=45.00 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=199.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTM--IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
-+++..++ ..|..+...|+...+ . ..|..| +-+-.-.|+-..|.++-.+..+.-.
T Consensus 59 wwlv~~iw---~sP~t~~Ryfr~rKR-d-------rgyqALStGliAagAGda~lARkmt~~~~~lls------------ 115 (531)
T COG3898 59 WWLVRSIW---ESPYTARRYFRERKR-D-------RGYQALSTGLIAAGAGDASLARKMTARASKLLS------------ 115 (531)
T ss_pred HHHHHHHH---hCcHHHHHHHHHHHh-h-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhh------------
Confidence 34455566 568888888887544 2 223333 3445567888888887776553210
Q ss_pred hcCCCCCccchHHHH--HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 122 IHDDPDGNSHVLSWL--VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.+..-+..+ .++-.-.|+++.|.+-|+-|... +.-...-+..|.-.--+.|+.+.|.+.-+......+. -
T Consensus 116 ------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l 187 (531)
T COG3898 116 ------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-L 187 (531)
T ss_pred ------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-C
Confidence 111112222 34455679999999999999873 1112222344444445688999999988888776554 4
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHhhCC-CCcCccc--HHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH-H
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCEMEFKD-VRADLFT--YNTLIALYC---KKGMHYEALAVQDRMEREGISPDIV-T 272 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~-~ 272 (591)
...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||.. .
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 5677888999999999999999998865532 2333221 122222211 12345566655555444 355543 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHh
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYP-GVVTYNSILRKLCK 350 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p-~~~~~~~ll~~~~~ 350 (591)
-..-..++.+.|+..++-++++.+=+..|....+... .+.+.|+.- +.-++...+. .++| +......+..+-..
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 3334677889999999999999987766766655433 344566532 2222221111 1223 45566667777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCC
Q 048533 351 EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK-IGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~ 403 (591)
.|++..|..--+..... .|....|..|.+.-.. .||-.++...+-+.++..
T Consensus 342 a~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 342 AGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred ccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 89988887776666553 6777788777776544 599999999998888763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.023 Score=45.20 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..-+....+.|++++|++.|+.+..+-+.+ +-...+-..++.+|.+.+++++|+..+++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45566777888899999999999999999876543 334467778999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD 178 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~ 178 (591)
++.++......|...+.+++.-
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHH
Confidence 9988765455666666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.4 Score=44.46 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=91.1
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhC--------
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVH-------- 159 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~-------- 159 (591)
-++|+++.|..++.++.......++.....+.+ ++...+......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~----------~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~ 73 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR----------VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD 73 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH----------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc
Confidence 356788888888877766442333333333333 2334444445555 888888888776543
Q ss_pred CCccC-----HHhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC
Q 048533 160 NLMPH-----LHACTVLLNSLAKDRLTD---MVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV 231 (591)
Q Consensus 160 ~~~~~-----~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 231 (591)
...|+ ..++..++.++...+..+ +|.++++.+.+.... ...++..-++.+.+.++.+.+.+.+.+|...-
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~- 151 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV- 151 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-
Confidence 11222 235566667776666543 455566666444332 34445455666666777777777777777642
Q ss_pred CcCcccHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCC
Q 048533 232 RADLFTYNTLIALYCK--KGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
......+...+..+.. ......+...++.+....+.|.
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 2133444444444321 1233445555555544433333
|
It is also involved in sporulation []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.047 Score=45.02 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV-----QLGVVANIHLY 203 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 203 (591)
++..++..+...|++++|+.+++.+...++- +...|..+|.++...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4555677788888899999998888888765 78888888899999998888888888774 35777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=43.53 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
..|.+.+++++|++++++++..++. +...+.....++.+.|+++.|.+.++...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577888888888888888888765 777778888888888888888888888887654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0046 Score=44.43 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...++..++.+|...|++++|++.|++..... .. .....+....++..++.+|...|++++|++.+++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE-EQ----------LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HH----------TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HH----------HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999999999987631 00 00001112356778899999999999999999987
Q ss_pred hh
Q 048533 157 RV 158 (591)
Q Consensus 157 ~~ 158 (591)
.+
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.36 Score=42.70 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch
Q 048533 36 SSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP 113 (591)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 113 (591)
..|.+......+..+.. |++++|.+.|+.+..++|..+.+..+...++.++.+.+++++|+..+++-....|.+.+
T Consensus 31 ~~p~~~LY~~g~~~L~~--gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 31 NLPASELYNEGLTELQK--GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 34556677777777764 99999999999999999998888888888999999999999999999999887765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.034 Score=53.31 Aligned_cols=66 Identities=8% Similarity=-0.091 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc---chHHHHHHHHHhcCChHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS---HVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
.+...+++++.+|.+.|++++|+..|++.++.++ .+. ..++.++.+|...|+.++|+..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P------------------d~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP------------------NPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------------CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3788899999999999999999999999888653 222 3478889999999999999999
Q ss_pred HHHHhhC
Q 048533 153 FDQMRVH 159 (591)
Q Consensus 153 ~~~~~~~ 159 (591)
++++++.
T Consensus 135 LrrALel 141 (453)
T PLN03098 135 LRTALRD 141 (453)
T ss_pred HHHHHHh
Confidence 9999885
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.21 Score=48.34 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
..++...+. ..++.+-++.-++|++..|+ -..+|..|+. -.+....+|..++++..+.
T Consensus 172 q~IMq~AWR-ERnp~aRIkaA~eALei~pd---CAdAYILLAE--EeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 172 QEIMQKAWR-ERNPQARIKAAKEALEINPD---CADAYILLAE--EEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhhh---hhHHHhhccc--ccccCHHHHHHHHHHHHHH
Confidence 345555554 36777778888888887765 4555554442 2345678888888887764
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.59 Score=43.72 Aligned_cols=145 Identities=12% Similarity=-0.011 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 388 DTASAMKVKNRMLEAGLMLDQF-TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
|...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+.+.. +..+.+.|+ .++.-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHH
Confidence 344555554444443 44422 23334567788888888888888888765 4443332 222344444 333333
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHC
Q 048533 467 DEFVSR-GLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRA-GEPKACSDILDDMYRR 542 (591)
Q Consensus 467 ~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 542 (591)
+...+. .++| +..+-..+.++-...|++..|+.--+.... ..|....|..|.+.-... ||-.++.+.+.+.++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333221 1222 556666777777888888888887777765 477788888888776655 8889999988888875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.61 Score=44.40 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 342 NSILRKLCKEGRIRDANRLLNEMNEKK---IAPDNVTCNTLINAYCK---IGDTASAMKVKNRMLEAGLMLDQFTYKALI 415 (591)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (591)
..++-+|....+++...++.+.+.... +.-+...-....-++.+ .|+.++|+.++..+......+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666677777666665531 11122222233344445 566666666666644444455566665555
Q ss_pred HHH
Q 048533 416 HGF 418 (591)
Q Consensus 416 ~~~ 418 (591)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.078 Score=40.95 Aligned_cols=93 Identities=12% Similarity=-0.047 Sum_probs=76.3
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|+.+.|++.|..++...|. ...+|++-++++.-+|+.++|.+-+++..+........ ..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--------------acq 116 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--------------ACQ 116 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--------------HHH
Confidence 3459999999999999998887 89999999999999999999999999988754332211 124
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
.|..-...|...|+-+.|..=|+..-+.|.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 556677789999999999999998888764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=42.35 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 479 SVYRALIRRFCKKEKVDYAQRLFNLMQGN----GI-LGD-SVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 479 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666667777777777777666532 11 122 34566677777777777777777776654
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.19 Score=43.62 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=13.3
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 048533 138 IFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..|..+|.++-|-..+++.-+
T Consensus 99 ~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHH
Confidence 347777777777666666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=53.11 Aligned_cols=131 Identities=18% Similarity=0.023 Sum_probs=96.4
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCC---C---------CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNY---K---------HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~---~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
.+--++.+.+.|++..|...|+.+....+.- + .-..++++++..+.+.+.+..|+...++.+...
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 3444566677889999999998877643310 0 123457789999999999999999999998865
Q ss_pred chHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh-HHHHHHHH
Q 048533 112 TPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD-MVWKVYKK 190 (591)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~ 190 (591)
+.|...+..-..+|...|+++.|+..|+++.+..+. |-.+-+.++..-.+.+... ...++|..
T Consensus 288 ---------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 288 ---------------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred ---------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888999999999999999999998765 6556666665555444433 34667777
Q ss_pred HHH
Q 048533 191 MVQ 193 (591)
Q Consensus 191 ~~~ 193 (591)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0026 Score=36.74 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHH
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQ 98 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~ 98 (591)
|+++++..|+ +..+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 6778888888 9999999999999999999986
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.7 Score=44.00 Aligned_cols=100 Identities=6% Similarity=0.029 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCC---CccCHHhHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN---LMPHLHACTVLLNSLAK---DRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
+.++...++-.|....+++.-+++.+.+.... +.-+...-...+-++.+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44566667777888888888888888877651 11122333345556666 7788888888888665555667777
Q ss_pred HHHHHHHHHc---------cCChhhHHHHHHHHhh
Q 048533 203 YNVLIHACCK---------SSDVDKVEKLLCEMEF 228 (591)
Q Consensus 203 ~~~ll~~~~~---------~g~~~~a~~~~~~~~~ 228 (591)
+..+.+.|-. ...+++|...|.+.-.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 7776665532 1134556666655443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=47.66 Aligned_cols=147 Identities=8% Similarity=-0.007 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHh---hhCCCCCCCHHHHHHHHHHHHcC---------CCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 56 IPSLSCAFFKWAE---SAVPNYKHSLQSHWTMIHILTKN---------KHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 56 ~~~~A~~~f~~~~---~~~p~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
....|+.+|..+. ..+|. ...+|..++..+... ....+|.++.+++.+.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--------------- 334 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--------------- 334 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC---------------
Confidence 5568999999999 55555 555555444322211 12233444444444433
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN-IHL 202 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~ 202 (591)
+.++.+...++.+..-.++++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.-- ...
T Consensus 335 ---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 335 ---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred ---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 455666666777667777788888888887777654 455566555666667778888877777666543211 122
Q ss_pred HHHHHHHHHccCChhhHHHHHHH
Q 048533 203 YNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 203 ~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
....++.|+.. .++.|.++|-+
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHhh
Confidence 22233344443 35555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.1 Score=42.78 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH-HHHHH
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSRG-LCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIY-TSLAY 521 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 521 (591)
..|...+.+-.+..-++.|..+|-++.+.+ +.++..++++++..++ .|+...|-++|+.-..+ -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 355666677677778899999999999988 6678889999998655 68899999999987664 3455444 55677
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhhcchhH
Q 048533 522 AYWRAGEPKACSDILDDMYRRRLMIT--LKIYRSFSASYAKDNEI 564 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~ 564 (591)
-+..-++-+.|..+|+..+.+ +.-+ ...|..+|+-=..-|++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 788889999999999977765 2223 45777777665555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.091 Score=41.51 Aligned_cols=94 Identities=10% Similarity=0.129 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 443 YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..++..++.++++.|+.+....+++..= |+.++... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666677777777766666665432 11111000 0000 11123456777777777777
Q ss_pred HHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRR-RLMITLKIYRSFSA 556 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~ 556 (591)
|+..|++..|.++++...+. +++.+...|..|++
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777664 56666666665554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.9 Score=41.07 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
-..-+..+...|++.+|..+|..+.... +.+..+...++.+|...|+.+.|..++..+....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA------------------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC------------------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 3344555666667777766666666543 2233445556666666777777766666654432
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC-CcCcccHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV-RADLFTYN 239 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 239 (591)
..........-+..+.+.........+-.+.-+. +. |...-..+...+...|+.+.|.+.+-.+.+++. ..|...-.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 2111111112233333333333333333333221 11 444444455555666666666555544443321 12333444
Q ss_pred HHHHHHHhcC
Q 048533 240 TLIALYCKKG 249 (591)
Q Consensus 240 ~li~~~~~~g 249 (591)
.++..+...|
T Consensus 277 ~lle~f~~~g 286 (304)
T COG3118 277 TLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcC
Confidence 4444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=35.64 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLL 172 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 172 (591)
.++..++..|.+.|++++|+++|+++++..+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 35667788888888888888888888887665 666655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.2 Score=41.44 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCH-----HHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSL-----QSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
+.|+.+.|...|.++....+...++. ..++..+..+...+ ++++|..++++..+.- +.........
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l--------~~~~~~~~~~ 76 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL--------EKPGKMDKLS 76 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--------HhhhhccccC
Confidence 45899999999999876442212222 34556777788888 9999999998865520 0000000000
Q ss_pred ----CCccchHHHHHHHHHhcCChH---HHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 127 ----DGNSHVLSWLVIFYANLKMTQ---DGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 127 ----~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.....++..++.+|...+..+ +|..+++.+....+. ....+..-+..+.+.++.+.+.+++..|...-.- .
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~ 154 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-S 154 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-c
Confidence 112246777888998877755 566677677555333 3456666778888889999999999999976321 3
Q ss_pred HHHHHHHHHHH---HccCChhhHHHHHHHHhhCCCCcCc
Q 048533 200 IHLYNVLIHAC---CKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 200 ~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
...+...+..+ ... ....+...++.+...-+.|..
T Consensus 155 e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 155 ESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33444444443 332 334555555555444334333
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.19 Score=48.49 Aligned_cols=67 Identities=10% Similarity=-0.126 Sum_probs=58.3
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL---HACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
|.+...+..+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556678888999999999999999999999998655 33 46999999999999999999999999885
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.39 Score=43.28 Aligned_cols=121 Identities=11% Similarity=-0.005 Sum_probs=63.7
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
....|++.+|..+|......... +...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45566666666666666665544 44555566666666666666666666655432221222222234444444444444
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
..+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444332 22445555555666666666666655554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.4 Score=41.61 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCchHHHHHH
Q 048533 81 HWTMIHILTKNKHFKSAQNML 101 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~ 101 (591)
|..++..-...|+.+=|..++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL 23 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLL 23 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHH
Confidence 344555666666666666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=42.21 Aligned_cols=428 Identities=8% Similarity=0.063 Sum_probs=206.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
..-..+|+.+...+++ ++..|..-+....+.+.+.+.-.+|..|...+|. +++++..-+
T Consensus 88 ~rIv~lyr~at~rf~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------------------~~dLWI~aA 146 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------------------NPDLWIYAA 146 (568)
T ss_pred HHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------------------CchhHHhhh
Confidence 3445667777665554 8888877777777777799999999999886643 334443333
Q ss_pred H-HHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------HHHHHH
Q 048533 138 I-FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH---------LYNVLI 207 (591)
Q Consensus 138 ~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll 207 (591)
. -|-.+.+++.|..+|.+.++.++. +...|....+.-.. .+..+..+=...|...+.. .++...
T Consensus 147 ~wefe~n~ni~saRalflrgLR~npd-sp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~ 220 (568)
T KOG2396|consen 147 KWEFEINLNIESARALFLRGLRFNPD-SPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYA 220 (568)
T ss_pred hhHHhhccchHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhc
Confidence 2 244556689999999999888765 44444333322110 0111111111111110000 000000
Q ss_pred ------H---------HHHccCChhhH-HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 208 ------H---------ACCKSSDVDKV-EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271 (591)
Q Consensus 208 ------~---------~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 271 (591)
. ...+.....+. ..+.+.+... .+.++.+|..+.. ..++-..+....+
T Consensus 221 ~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~-~~~np~~~~~laq------------r~l~i~~~tdl~~--- 284 (568)
T KOG2396|consen 221 NSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQ------------RELEILSQTDLQH--- 284 (568)
T ss_pred cchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHH------------HHHHHHHHhhccc---
Confidence 0 00000000000 1112222221 2233444433322 2222111110111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC------CHHHHHHHHHHHHHCC-CCC-CHHHHHH
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRAN------DLEEALRLREVMAAKG-VYP-GVVTYNS 343 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g------~~~~a~~~~~~~~~~~-~~p-~~~~~~~ 343 (591)
....-....-.-+.+....+|+.....-|+...|+..|..|.... .+.....+++.....+ ..+ ....|..
T Consensus 285 -~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~ 363 (568)
T KOG2396|consen 285 -TDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSV 363 (568)
T ss_pred -hhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 001111111111223334667766665666677777766664432 2333334444444332 222 3345555
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 344 ILRKLCKEGRI-RDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG-DTASA-MKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 344 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+++..... .-|..+..+... .+...|..-+....+.. |++-- ...+......-..+....|+...
T Consensus 364 ~~l~~~t~~~~r~~a~~l~~e~f~----~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----- 434 (568)
T KOG2396|consen 364 LLLCLNTLNEAREVAVKLTTELFR----DSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----- 434 (568)
T ss_pred HHHHHhccchHhHHHHHhhHHHhc----chHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----
Confidence 55555554432 233333333333 25555555554444221 22211 12222222221122233333333
Q ss_pred cCC-HHHH--HHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCH
Q 048533 421 AKE-MDIA--KELLFGMLDAGFSPSYCSY-SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC--KKEKV 494 (591)
Q Consensus 421 ~~~-~~~a--~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~ 494 (591)
.|+ .... ..++......+ .|+..++ +.++..+.+.|-..+|...+..+... ++|+...|..+++.-. .+-+.
T Consensus 435 ~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l 512 (568)
T KOG2396|consen 435 EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNL 512 (568)
T ss_pred hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCc
Confidence 111 1111 11222222222 3454444 55677777888888888888888776 5567777777776532 22347
Q ss_pred HHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 495 DYAQRLFNLMQG-NGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 495 ~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..++++|+.|.. .| .|+..|...+.--...|+.+.+-.++.++++.
T Consensus 513 ~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 513 ANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 778888888775 44 57788887777777888888888887777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.19 Score=39.71 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 048533 409 FTYKALIHGFCKAKEMDIAKELLFGML---------------DAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR- 472 (591)
Q Consensus 409 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 472 (591)
.++..++.++++.|+.+....+++..- .....|+..++.+++.+|+..|++..|+++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544443322 1223455556666666666666666666666555543
Q ss_pred CCCCCHHHHHHHHHHH
Q 048533 473 GLCVDVSVYRALIRRF 488 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~ 488 (591)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4444555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=2.7 Score=43.69 Aligned_cols=179 Identities=13% Similarity=0.075 Sum_probs=116.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
....-+....+...++-|+.+-..- +..++ ...+......+.+.|+++.|..-|-+.... +.| ..++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3445667778888888888765432 22222 233455556666799999998888766542 122 235666
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~ 288 (591)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. -| .-..+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHH
Confidence 67777777778889999988864 66677889999999999988877776554 2221 12 2345566666677777
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 289 ARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 289 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (591)
|..+-..... +......+ +-..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~---he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK---HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc---CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 7766655542 33333333 344688999999887653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.13 Score=45.69 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHHHHHH
Q 048533 530 KACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLFWSHV 572 (591)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 572 (591)
+=+++++++|...|+.||..+-..|+.+|++.|=..+.+|-++
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 4477888888888888888888888888888876665555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.3 Score=48.19 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=104.0
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
++...+.--++-+. ++++.+....+.. +..|..| ..-...++..|.+.|..+.|+++.+.-..
T Consensus 261 ld~~~~~fk~av~~---~d~~~v~~~i~~~-~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------- 323 (443)
T PF04053_consen 261 LDLSELEFKTAVLR---GDFEEVLRMIAAS-NLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH----------- 323 (443)
T ss_dssp --HHHHHHHHHHHT---T-HHH-----HHH-HTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------
T ss_pred ECHHHHHHHHHHHc---CChhhhhhhhhhh-hhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------
Confidence 34444444434343 7888877776522 2234322 34466788899999999999888543222
Q ss_pred HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 118 ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
-.....+.|+++.|.++..+. ++...|..|.....++|+++.|.+.|.+...
T Consensus 324 ------------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---- 375 (443)
T PF04053_consen 324 ------------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---- 375 (443)
T ss_dssp ------------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----
T ss_pred ------------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----
Confidence 234466788998888775433 3677899999999999999999998887642
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDR 260 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 260 (591)
+..|+-.|.-.|+.+...++.+....+| -++....++.-.|+.++..+++.+
T Consensus 376 -----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888888888888887777665 255666666677888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.6 Score=42.10 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHhhCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhhHHH
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLH-ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC-KSSDVDKVEK 221 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~ 221 (591)
...+.+..++..++.. .|... -|......-.+.|..+.+.++|++.++ +++.+...|......+. ..|+.+...+
T Consensus 59 ~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3445666677777654 34433 345555555677888888888888876 35556777776665544 3467777777
Q ss_pred HHHHHhhC-CC-CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 222 LLCEMEFK-DV-RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 222 ~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.|+..... |. -.+...|...|..-..++++.....+|+++++.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77776553 21 123456777777777788888888888888874
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.4 Score=44.26 Aligned_cols=231 Identities=8% Similarity=-0.008 Sum_probs=122.1
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
..+.++|+......+.+..+......++..+..+..+.|+++++...--..+....... +....-..|
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~------------ds~~~~ea~ 86 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE------------DSDFLLEAY 86 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 46778888888777765544333456666788899999999888665432222100000 001111345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC-CCcc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVH-NLMP---HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-----ANIHLYN 204 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~ 204 (591)
..+..++.+.-++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.... ....++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 55666666666666666655444332 1111 1123344556666677777888777776653211 1234566
Q ss_pred HHHHHHHccCChhhHHHHHHHHhh----CCCCcCcc-cH-----HHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-
Q 048533 205 VLIHACCKSSDVDKVEKLLCEMEF----KDVRADLF-TY-----NTLIALYCKKGMHYEALAVQDRMER----EGISPD- 269 (591)
Q Consensus 205 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~-~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~- 269 (591)
.|...|.+..++++|.-+..+... .++. |.. -| ..+..++...|....|.+..++..+ .|-.+.
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777776655444322 2211 111 11 1233345556666666665555433 222111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
......+.+.|...|+.+.|..-|++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233445555666666666666665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=45.09 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048533 421 AKEMDIAKELLFGMLDAGFSPSYCSYSWL-VDGYCNKNNEEALLKLLDEFVSRG---LCVDVSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 496 (591)
..+.+.|.+++..+... -|+...|... .+.+...|++++|++.++.+.... .+.....+-.+...+.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45667777888877764 3565555443 345566788888888888665321 12234456666677777888888
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHH-HHHHcCCh-------hHHHHHHHHHHH
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAY-AYWRAGEP-------KACSDILDDMYR 541 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~ 541 (591)
|...|.++.+.+ ..+..+|..+.. ++...|+. ++|.++|.++..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888742 223444444333 33456666 777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.1 Score=36.97 Aligned_cols=125 Identities=10% Similarity=-0.039 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+.+++|+.-|....+.... ...+-+...++.++...|+-..|...|.++....+.|.. +..+.++
T Consensus 72 ~k~d~Alaaf~~lektg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~--~rd~ARl------------ 136 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI--GRDLARL------------ 136 (221)
T ss_pred CCchHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch--hhHHHHH------------
Confidence 7788888888887764333 222334456777888888888888888888775543321 1111110
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.-.-.+...|.+++.....+.+...+-+-....-..|.-+-.+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112235567777777777776655543334445556666666777777777777777654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.34 Score=37.59 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcC--HHHHHHHHHHHHHcC
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN-GILGD--SVIYTSLAYAYWRAG 527 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 527 (591)
.+....|+.+.|++.|.+.+..-+. .+..||.-..++.-.|+.++|+.=+++..+. |-+-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3456778888888888888776333 6778888888888888888888888877763 22211 134555566777888
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 048533 528 EPKACSDILDDMYRRRLM 545 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~ 545 (591)
+.+.|..-|+...+.|.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888887754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.6 Score=38.30 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 71 VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 71 ~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
-|++..-...|...+.+|...++|++|..-+.++.+
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 455555567788888889999999999888887764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.92 Score=35.42 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
+.......+......|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455667777888889988888888888763 4678888889999999999999999999999998865
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.37 Score=44.02 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=97.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHccCChh
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL-GVVAN--IHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~ll~~~~~~g~~~ 217 (591)
-..|+..+|...++++++.-++ |..++...=.++.-.|+.+.-...++++.-. +.... ..+...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888888888887555 7777777778888888888888888877643 22222 222233334456778888
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP---DIVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
+|.+.-++..+.+ +.|..+-.++...+-..|++.++.+...+-...--.. -...|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888877765 4566666777777778888888887765533210000 01111122233445577777777776
Q ss_pred H
Q 048533 295 D 295 (591)
Q Consensus 295 ~ 295 (591)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.3 Score=44.54 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
...|.-++...|. ....++...+-.|+-+.+++++....+
T Consensus 177 ~G~f~L~lSlLPp------~~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 177 FGLFNLVLSLLPP------KVLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHHHHHhCCH------HHHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 4455555555664 345677888888999999998888765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.1 Score=39.77 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=20.9
Q ss_pred HhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMERE--GISPDIVTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 291 (591)
....+.++|+..+.+.... +..--..++..+..+.++.|.+++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3445556666555544332 001112334445555555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.68 Score=45.77 Aligned_cols=131 Identities=20% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 339 VTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGF 418 (591)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 418 (591)
...+.++..+.+.|..+.|+++..+-. .-.....+.|+++.|.++.++ ..+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 335555555666666666665543221 112333455666665544321 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQ 498 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 498 (591)
.+.|+++-|++.+.+..+ +..|+-.|.-.|+.+.-.++.+.+...|- ++....++.-.|++++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444445555665555555555554431 233334444445555555
Q ss_pred HHHH
Q 048533 499 RLFN 502 (591)
Q Consensus 499 ~~~~ 502 (591)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.64 Score=45.05 Aligned_cols=114 Identities=7% Similarity=-0.003 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+..+|+.+-+.+.+..|. +..+.+.++.++...|+++.|..+|++....+ |....++.
T Consensus 318 ~~~~~a~~~A~rAveld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------------------Pn~A~~~~ 376 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHS------------------TDIASLYY 376 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------------------CccHHHHH
Confidence 4456788888888888887 89999999999999999999999999999876 34456677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH-HHHHHHHHhcCChhHHHHHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC-TVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
.......-.|+.++|++.+++..+.++.--.... ...+..|+.. ..+.|+.+|-+
T Consensus 377 ~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 377 YRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7777788899999999999998887654222222 2223344443 45666666644
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.2 Score=40.73 Aligned_cols=393 Identities=11% Similarity=0.015 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+.+.+...+..++...|- ..-|| ..+..-.+.|..+.+..+|++....-+ .....+.
T Consensus 60 ~~~~~r~~y~~fL~kyPl----~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip------------------~SvdlW~ 117 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL----CYGYWKKFADYEYKLGNAENSVKVFERGVQAIP------------------LSVDLWL 117 (577)
T ss_pred HHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh------------------hHHHHHH
Confidence 345566666666655663 44455 577778888999999999998876322 1122222
Q ss_pred HHH-HHHHhcCChHHHHHHHHHHhhC---CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 135 WLV-IFYANLKMTQDGLQVFDQMRVH---NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 135 ~l~-~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
... .+....|+.+.....|+++... +.. +...|...+..-..++++....++|+++++. ....++.....|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f 192 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHH
Confidence 222 2233567777888888887764 222 4557788888888888999999999999874 233333333333
Q ss_pred Hc---c------CChhhHHHHHHHHhhC-CCC---cCcccHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 211 CK---S------SDVDKVEKLLCEMEFK-DVR---ADLFTYNTLIALYC-KKGMHYEALAVQDRMEREGISPDIVTYNSL 276 (591)
Q Consensus 211 ~~---~------g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 276 (591)
.+ . ...+++.++-.....+ ..+ +....+..-+.--. ..+..+++.....+.. ...
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~ 261 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIH 261 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHH
Confidence 21 1 1222222222222110 000 00000000000000 0001111111111100 001
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc-----C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 277 IHGFCREGRMREARRLFRDIKG-----A----TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRK 347 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 347 (591)
-..+-......+....|+.-.. . .++...|...+..-.+.|+.+.+.-+|+...-.- ..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHH
Confidence 1112222233333344443322 1 2245667777888888888888888888776421 1112233334444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ-FTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 426 (591)
....|+.+-|..++....+--.+..+.+--.-....-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhh
Confidence 44558877777777666554333222222222222334678888888888887763 332 222233344556777777
Q ss_pred HH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 427 AK---ELLFGMLDAGFSPSYCSYSWLVDG-----YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE 492 (591)
Q Consensus 427 a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 492 (591)
+. +++...... .-+..+...+.-- +.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 419 ~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 419 ANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 76 333333321 1122222222221 22356788888888888775 4446777777777665544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.5 Score=35.61 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 415 IHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 415 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
+..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444433 2333444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2 Score=36.90 Aligned_cols=186 Identities=14% Similarity=0.002 Sum_probs=105.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.+|..-|-...|.--|..++...|. -+++++.++.-+...|+++.|.+.|+...+.++...-+..+..+.
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~------ 142 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA------ 142 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee------
Confidence 34455556666677777777777776 788899999999999999999999999998876554443333332
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cCHHhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PHLHACTVLLNSLAKDRLTDMVW-KVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.--|+++-|.+=+.+.-+.++. |-...|..+.. ..-++..|. .+.++..+ .|...|..
T Consensus 143 ------------~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~ 203 (297)
T COG4785 143 ------------LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGW 203 (297)
T ss_pred ------------eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhH
Confidence 23357888888777776666543 21222322222 223444444 33444433 24444433
Q ss_pred HHH-HHHccCChhhHHHHHHHHhhCCC------CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 206 LIH-ACCKSSDVDKVEKLLCEMEFKDV------RADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 206 ll~-~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.|- .|.-.=.. ..+++++....- ..=..||.-+..-+...|+.++|..+|+-....
T Consensus 204 ~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 204 NIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 332 22211111 122333322100 001235666667777777777777777766654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.051 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMI 85 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~ 85 (591)
.++..+...|++++|.+.|+.+++..|+ +..++..++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 3445555556666666666666666665 555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.3 Score=44.28 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=59.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-----LGVVANIHLYNV 205 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 205 (591)
.++..++..+...|+.+.+.+.++++...++. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45666777888888888888888888887766 778888888888888888888888887765 567776666655
Q ss_pred HHHH
Q 048533 206 LIHA 209 (591)
Q Consensus 206 ll~~ 209 (591)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.28 Score=43.58 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 048533 290 RRLFRDIKGATPNHVTYTTLIDGYCR-----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG------------ 352 (591)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~------------ 352 (591)
.+.|..+...+.|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444445566677776666543 4567777777888888888889999988888764422
Q ss_pred ----CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCH
Q 048533 353 ----RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDT 389 (591)
Q Consensus 353 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 389 (591)
+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344777888888888888888888888888776643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.9 Score=37.26 Aligned_cols=124 Identities=15% Similarity=0.020 Sum_probs=64.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 417 GFCKAKEMDIAKELLFGMLDAGF--SPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV 494 (591)
Q Consensus 417 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 494 (591)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555533110 0112222222333445566666666666666542211345556666666666666
Q ss_pred HHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 495 DYAQRLFNLMQGNGILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 495 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
+.+...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777766666654 222 334444444444555666777666666664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.9 Score=35.04 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 176 (591)
++..+...+.+.....+++.+...+. .+...++.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 34444444444444444444444432 23334444444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.5 Score=42.43 Aligned_cols=61 Identities=15% Similarity=-0.060 Sum_probs=40.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 234 DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 234 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
+..+...+...+.+...+.-|-++|.+|-.. ..+++.+...++|.+|..+-+..++..||+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc
Confidence 3445555555566666777777777766431 235667777888888888888877766654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=7.5 Score=40.83 Aligned_cols=264 Identities=11% Similarity=0.047 Sum_probs=141.8
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHH
Q 048533 71 VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150 (591)
Q Consensus 71 ~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 150 (591)
+|+.|........-...+.+.+++++..+.+ ..++.+...-...+.+....|+.++|.
T Consensus 92 ~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~A~ 149 (644)
T PRK11619 92 NPTLPPARSLQSRFVNELARREDWRGLLAFS----------------------PEKPKPVEARCNYYYAKWATGQQQEAW 149 (644)
T ss_pred CCCCchHHHHHHHHHHHHHHccCHHHHHHhc----------------------CCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5654444444444445555555555544421 123445555666777888889888887
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHc------------cCCh
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM--VWKVYKKMVQLGVVANIHLYNVLIHACCK------------SSDV 216 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------------~g~~ 216 (591)
.....+-..|.. ....+..++..+.+.|.... ..+=+..+...| +...-..+...+.. ..+.
T Consensus 150 ~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p 225 (644)
T PRK11619 150 QGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDP 225 (644)
T ss_pred HHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCH
Confidence 777776555543 55678888888887665443 222233333322 22222222221100 0111
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREG-ISPDI--VTYNSLIHGFCREGRMREARR 291 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~~p~~--~~~~~l~~~~~~~g~~~~A~~ 291 (591)
..+..++.. ++++...-..++.++. ...+.+.|..++..+.... ..+.. ..+..+.......+...+|..
T Consensus 226 ~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~ 300 (644)
T PRK11619 226 NTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAK 300 (644)
T ss_pred HHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 111111111 1122211121222222 3456688888888874432 22222 233344433344333567777
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 292 LFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
.+........+......-+......++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+..
T Consensus 301 w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 301 WRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777765433455555555666668899999888888875532 22444556667777778999999999988743
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=2.7 Score=35.57 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.++..+...|++++|..-++..... +.+..+.+++. ..|.+.....|.+++|+..++.....+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~------------lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA------------LRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 4567777777887777777766542 12233333332 23566677777777777777766554332
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+ .....-..++...|+-++|+.-|+...+.+
T Consensus 159 ~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 A--IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred H--HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 1 122334466677777777777777777664
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.51 Score=39.74 Aligned_cols=97 Identities=13% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+.-+++.|.|.+|..-|..++..-+...... ..-+|..-+.++.+.+.++.|+.-..+.++.++. .
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~-------------rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y 167 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEE-------------RSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-Y 167 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHH-------------HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-h
Confidence 4445566666666666666665433222110 1123444455566666666666666666665543 3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
..+...-..+|.+...++.|++-|..+.+..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3334444455666666666666666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.25 E-value=5.9 Score=38.88 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCNKNNEEALLKLLDEF 469 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 469 (591)
.++.+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+.
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3334445555555555554432211 11223344444444444444444444444
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=3.2 Score=34.30 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH
Q 048533 87 ILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 87 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
-+.+.|..++|+.-|..+.+.|..+.+.+ ..........+.|+...|+..|+++-.....|...
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvL----------------A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVL----------------ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHH----------------HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 45677788888888888777664433221 11123345667777777777777776665444432
Q ss_pred -hHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 167 -ACT--VLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 167 -~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
... .-.-.+...|.++......+-+-..+-+.....-..|.-+-.+.|++..|.+.|+.+..
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 111 11123345566666555555554433333333444555555566666666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=40.83 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYRSF 554 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 554 (591)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555555555555555555542 22445555555555555555555555555544 2555555555444
Q ss_pred HHh
Q 048533 555 SAS 557 (591)
Q Consensus 555 i~~ 557 (591)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.8 Score=32.91 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
-.|..++..++..+.... .+..-+|.++--....-+-+-..+.++.+-. --|.. .+|+.......+
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk-iFDis----------~C~NlKrVi~C~ 79 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK-IFDIS----------KCGNLKRVIECY 79 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG-GS-GG----------G-S-THHHHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh-hcCch----------hhcchHHHHHHH
Confidence 456677777777776653 2455566666555555555666666665543 11111 123333333333
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 327 EVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 327 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
-.+- .+.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++-+.|+
T Consensus 80 ~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2221 12334445556666667777777777766542 345666666677777777777777777777766654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.61 E-value=11 Score=39.66 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=122.7
Q ss_pred hHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 58 SLSCAFFKWAESAVPNY--KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
..|.++++.|...-+.. +....-|+.++. .|++.++.+.+... ..+ .....+...
T Consensus 8 ~lAeey~~~A~~~~~~~~~~~~l~~Y~kLI~---------~ai~CL~~~~~~~~-l~p-------------~~ea~~~l~ 64 (608)
T PF10345_consen 8 SLAEEYLEKAHSLATKVKSEEQLKQYYKLIA---------TAIKCLEAVLKQFK-LSP-------------RQEARVRLR 64 (608)
T ss_pred HHHHHHHHHhHHHHHhcCChhhHHHHHHHHH---------HHHHHHHHHhccCC-CCH-------------HHHHHHHHH
Confidence 34555555554322211 235666777765 46777777765221 111 112244556
Q ss_pred HHHHHH-hcCChHHHHHHHHHHhhCCCccCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHH
Q 048533 136 LVIFYA-NLKMTQDGLQVFDQMRVHNLMPHLH-----ACTVLLNSLAKDRLTDMVWKVYKKMVQLG----VVANIHLYNV 205 (591)
Q Consensus 136 l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 205 (591)
++..+. ...+++.|...+++.....-.++.. ....++..+.+.+... |....++..+.- ..+-...|..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 677665 6889999999999886554333322 2235556666666555 888888876532 1122233333
Q ss_pred H-HHHHHccCChhhHHHHHHHHhhCC---CCcCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCC---------CCCH
Q 048533 206 L-IHACCKSSDVDKVEKLLCEMEFKD---VRADLFTYNTLIALYC--KKGMHYEALAVQDRMEREGI---------SPDI 270 (591)
Q Consensus 206 l-l~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~---------~p~~ 270 (591)
+ +..+...+++..|.+.++.+...- ..|-..++-.++.+.. ..+..+++.+.++.+..... .|-.
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 3 333334489999999998876542 1233444444444443 45666777777777643211 2345
Q ss_pred HHHHHHHHHH--HhcCCHHHHHHHHHHhh
Q 048533 271 VTYNSLIHGF--CREGRMREARRLFRDIK 297 (591)
Q Consensus 271 ~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 297 (591)
.+|..+++.+ ...|+++.+...++++.
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666554 46688778877776664
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.4 Score=39.03 Aligned_cols=152 Identities=14% Similarity=0.058 Sum_probs=87.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHHHcCCHH
Q 048533 315 RANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDN----VTCNTLINAYCKIGDTA 390 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 390 (591)
..|++.+|-..++++.+. .+-|...+...-.++.-.|+...-...++++... ..+|. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 366666766667776654 3445566666666777777777777777776654 12222 22233344455677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 391 SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS----YCSYSWLVDGYCNKNNEEALLKLL 466 (591)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 466 (591)
+|.+.-++..+.+ +.|.-.-.++...+.-.|+..++.+...+-... .+.+ ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777766654 335555566666666677777777766554321 1100 112222333445557777777777
Q ss_pred HHHH
Q 048533 467 DEFV 470 (591)
Q Consensus 467 ~~~~ 470 (591)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.52 E-value=6.4 Score=36.69 Aligned_cols=125 Identities=15% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCC---
Q 048533 253 EALAVQDRMEREGISPDIVTYNSLIHGFCR--E----GRMREARRLFRDIKGAT-----PNHVTYTTLIDGYCRAND--- 318 (591)
Q Consensus 253 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--- 318 (591)
+.+.+++.|.+.|+.-+..+|.+....... . .....|..+|+.|++.. ++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445677777888777666555442222222 1 13456777777777632 334444444333 2233
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChHHHHHH
Q 048533 319 -LEEALRLREVMAAKGVYPGVV--TYNSILRKLCKEGR--IRDANRLLNEMNEKKIAPDNVTCNTL 379 (591)
Q Consensus 319 -~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (591)
.+.+..+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345556666777666554322 22222222211111 34566666667776666655554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.40 E-value=4.7 Score=34.76 Aligned_cols=179 Identities=17% Similarity=0.061 Sum_probs=88.2
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
.|-..-|.-=|.+.+...++ -..+||.+.-.+...|+++.|.+.|+...+.++.-+-...|.-|. +--.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 34444444445555554433 456777777777788888888888888877765533333333332 3345777777776
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcCC
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQ-DRMEREGISPDIVTYNSLI-HGFCREGRMREARRLFRDIKGAT 300 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 300 (591)
+...-..+ |+...-...+..--..-++.+|..-+ ++.... |..-|...+ ..|...=..+ .+++++....
T Consensus 156 ~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADA 226 (297)
T ss_pred HHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhc
Confidence 66655443 22111111222222333555554433 333322 333333222 2222111112 2222222211
Q ss_pred C--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 301 P--------NHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 301 ~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
. =+.+|--+...+...|+.++|..+|+.....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 1234555666666677777777777666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.16 Score=29.71 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
++..|+.++.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999553
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=9 Score=37.29 Aligned_cols=162 Identities=13% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHhccccch---hcCCCCCC-CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 048533 13 FIKTISAIMLKGHWAK---LLNPNIAS-SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHIL 88 (591)
Q Consensus 13 ~~~~i~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~ 88 (591)
|...||.-.-++-... .+..+-+. .+........+-+.+. .|+...|-.-...+++.+|+ .+........++
T Consensus 258 Fa~~iv~~~fkg~in~~~~~~d~~~q~~~~~~~~~~~si~k~~~-~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~ 333 (831)
T PRK15180 258 FGDAIVAAIFKGVINNTNHHLDEGRQEKQDQIREITLSITKQLA-DGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIF 333 (831)
T ss_pred HHHHHHHHHHhcccCCcccccccccCcCCcchhHHHHHHHHHhh-ccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHH
Confidence 7778887776664332 22222122 2333444444444444 38888888777778887887 444445566778
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
...|.|+.+.+.+......- .........+++...+.|++++|..+-+-|+...+. +.+..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~------------------~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~ 394 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKII------------------GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVL 394 (831)
T ss_pred HHhhhHHHHHHHhhchhhhh------------------cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-Chhhe
Confidence 88999999998886554311 122345666777788899999999999999988776 66666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..........|-++++.-.++++...+.+
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 65556666678889999999888776543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.1 Score=38.08 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP--HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
..+..++..|.+.|+.++|++.|.++.+....+ -...+-.+++.....+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345567788888899999999888888764433 3456677788888888888887777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.11 E-value=5.6 Score=34.78 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGIS 267 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (591)
..-...+++.+|+++|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566777777777776655433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=6.2 Score=35.03 Aligned_cols=222 Identities=18% Similarity=0.053 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048533 284 GRMREARRLFRDIKGATPN---HVTYTTLIDGYCRANDLEEALRLREVMAAK-GVYPGVVTYNSILRKLCKEGRIRDANR 359 (591)
Q Consensus 284 g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 359 (591)
+....+...+.......+. ...+......+...+++..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444332222 345555555666666666666666555531 122334445555555556666666777
Q ss_pred HHHHHHhCCCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 360 LLNEMNEKKIAPDNVTCNTLIN-AYCKIGDTASAMKVKNRMLEAGL--MLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 122222222 56677777777777777654221 11233344444445667788888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 437 AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.........+..+...+...++.+.+...+......... ....+..+...+...+..+.+...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 431113566777777777788888888888888775322 2344444444555666788888888887764
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=8 Score=38.62 Aligned_cols=165 Identities=9% Similarity=-0.009 Sum_probs=87.2
Q ss_pred ccchhcCCCCCCCCCh-HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCC---------CCCCHHHHHHHHHHHHcCCCc
Q 048533 25 HWAKLLNPNIASSLTS-TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPN---------YKHSLQSHWTMIHILTKNKHF 94 (591)
Q Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~---------~~~~~~~~~~l~~~~~~~g~~ 94 (591)
.|++...+++...+.. ... +.-.-+.+.+.+++|..-|.-+....+. .|.-+.+...++.++..+|+.
T Consensus 223 ~W~p~~r~gLSMkll~sq~~--isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 223 DWPPTQRSGLSMKLLESQKG--ISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDR 300 (665)
T ss_pred cCCCcccCCcceeeecccCc--eeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcch
Confidence 3776666655443221 110 0011233456778888888877654221 133567788899999999999
Q ss_pred hHHHHHHHHHHHcC---CCCchHHHHHHHhhcCCCCCccchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 95 KSAQNMLEKIALRD---FLSTPSVLNALVKIHDDPDGNSHVLSWL---VIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 95 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
+-|..++++.+-.- ..+.=..+....++-...+.|...|..+ +....+.|-+..|.++..-+.+.++.-|....
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 99999888765410 0000000000011111223344444443 33455566666666666666666554455555
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHH
Q 048533 169 TVLLNSLA-KDRLTDMVWKVYKKM 191 (591)
Q Consensus 169 ~~ll~~~~-~~~~~~~a~~~~~~~ 191 (591)
..+|..|+ +.++++-.+++++..
T Consensus 381 l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 381 LYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555554 344455555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.25 Score=28.83 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 515 IYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
+|..|..+|.+.|++++|+.+|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=92.74 E-value=14 Score=38.45 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHH
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIA 105 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (591)
..||..+..+.-.|++++|.++++...
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 678999999999999999999985443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSW-LVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 419 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
.+.++.+++..++..+.-. .|....... -...+...|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666655542 233322222 133345566666666666665543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
++..-.+.+..+++..++.-+....| ..+.+-..-+..+.+.|++.+|+.+|+.+...
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP------------------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRP------------------EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCC------------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34444555666677666666655432 22233333444566677777777777776554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=5.7 Score=35.94 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=47.7
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+++...+.|..+|.+.+|.++.+.....+ +.+...|..++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34555677888899999999888888775 66778888888888888888888777777643
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.51 E-value=1 Score=32.88 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 494 VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 494 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
.=++++-++.+...++.|++.+..+.+++|.+.+++..|.++++-...+.- .....|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHH
Confidence 335566666666666777777777777777777777777777777665421 13335554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.49 E-value=11 Score=36.48 Aligned_cols=65 Identities=15% Similarity=0.040 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLML---DQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
...+|..++..+.+.|.++.|...+..+...+... .+.....-+......|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777777888888877777776643211 334444455566667777777777777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=92.42 E-value=11 Score=36.41 Aligned_cols=132 Identities=8% Similarity=0.079 Sum_probs=84.3
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHH--------HHhhcCCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA--------LVKIHDDP 126 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 126 (591)
+||+.=..+++ ..|- -++++..+..++.++|+.+.|.+++++++-.--......|.. -.++-...
T Consensus 24 ~Dp~~l~~ll~----~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 24 HDPNALINLLQ----KNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred cCHHHHHHHHH----HCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 46665444443 2564 789999999999999999999999999865211111111110 11111223
Q ss_pred CCccchHHHH---HHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 048533 127 DGNSHVLSWL---VIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA-KDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 127 ~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 193 (591)
+.|..+|..+ +....+.|-+..|+++..-+...++.-|.......|..|+ +.++++-.+++++....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455666554 4567788888888888888888776656666666676665 55666666666666544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.30 E-value=21 Score=39.30 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=78.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 380 INAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI----HGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 380 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
++.--+.|-+++|+.++ .|+...+.... ..+...+.+++|.-.|+..=+ ....+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHH
Confidence 33334445555555443 45555544444 344456667777666654321 1233667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVS--VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
.|++.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+..+. ..-.+..|++...|++|.
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHH
Confidence 88888888887766532 1222 2256777778888888888888777653 233445566666777777
Q ss_pred HHHHHHH
Q 048533 534 DILDDMY 540 (591)
Q Consensus 534 ~~~~~~~ 540 (591)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 7655544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.24 E-value=16 Score=37.89 Aligned_cols=107 Identities=9% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 443 YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..++|++-.++-+... .+.-|...+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3345555667778899999998877664 3588888888899999999998777665543 25557889999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcchhHHHHH
Q 048533 523 YWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDNEILDLF 568 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 568 (591)
|.+.|+.++|.+++-+..... -...+|.+.|++.++.
T Consensus 754 c~~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHhcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHH
Confidence 999999999999887654421 3455566666655544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.2 Score=28.39 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
+++.++.++.+.|++++|.+.|+++....|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 456677777777888888888887776554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.39 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.++..++.++...|++++|++.|++.....+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577889999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.91 E-value=8.9 Score=34.26 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=101.0
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
+...|++|+..|+..++..|.... ...+.-.++.+..+.|++++....+..+... +.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------Ik-------------- 96 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IK-------------- 96 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HH--------------
Confidence 446899999999999886554111 1233446888889999998888888777641 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCH----HHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL--GVVANI----HLYNV 205 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~ 205 (591)
.+..++ -+..+.|.++......++.+...+.|+.-... .-+ +. .|-..
T Consensus 97 -----------------------SAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtK 150 (440)
T KOG1464|consen 97 -----------------------SAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTK 150 (440)
T ss_pred -----------------------HHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccch
Confidence 111111 12333444444444444444333333322210 000 11 12234
Q ss_pred HHHHHHccCChhhHHHHHHHHhhC-----CC------CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHH
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEFK-----DV------RADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISPDIVTY 273 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~~-----~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~ 273 (591)
|...|...|++.+..++++++... |- ..=...|..-|..|....+-.....+|++..... .-|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 556666667777777777666432 10 0113356666777777777777777777654421 12333322
Q ss_pred HHH----HHHHHhcCCHHHHHHHH
Q 048533 274 NSL----IHGFCREGRMREARRLF 293 (591)
Q Consensus 274 ~~l----~~~~~~~g~~~~A~~~~ 293 (591)
..+ ..++.+.|++++|..-|
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHH
Confidence 221 12244567777765443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.43 Score=27.28 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
.+|..++.++...|++++|+..|+++++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677788888888888888888888877543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.87 E-value=9 Score=34.23 Aligned_cols=186 Identities=10% Similarity=0.100 Sum_probs=93.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcC
Q 048533 248 KGMHYEALAVQDRMEREGISPDIV---TYNSLIHGFCREGRMREARRLFRDIKG-------ATPNHVTYTTLIDGYCRAN 317 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~li~~~~~~g 317 (591)
...+++|+.-|++..+.......+ +...++..+.+.|++++....+.++.. ..-+..+.|.+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346777777777776643222222 334556667777777777777766642 2223445566666555555
Q ss_pred CHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC------CCChHHHHHHHH
Q 048533 318 DLEEALRLREVMAAK--GVYPG---VVTYNSILRKLCKEGRIRDANRLLNEMNEK-----KI------APDNVTCNTLIN 381 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~li~ 381 (591)
+.+-..++|+.-.+. ..+.+ -.|-..+...|...+.+.+..++++++... |- ..-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555555433221 00000 112234455555666666666666665432 10 001234555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 048533 382 AYCKIGDTASAMKVKNRMLEAGL-MLDQFTYKALIHGF-----CKAKEMDIAKELLFGM 434 (591)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 434 (591)
.|....+-.+...+|++...... -|.+... .+++-| .+.|++++|..-|-++
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 66666666666666666543321 2333322 233322 3456666665444333
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.81 E-value=7.6 Score=36.91 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=17.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 240 TLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 240 ~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
.+...+...|..+.|..+++.+.+.++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 344445567777777777777776554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.27 Score=28.28 Aligned_cols=29 Identities=14% Similarity=-0.073 Sum_probs=14.0
Q ss_pred HHhhCCCccCHHhHHHHHHHHHhcCChhHH
Q 048533 155 QMRVHNLMPHLHACTVLLNSLAKDRLTDMV 184 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 184 (591)
+.++.++. +..+|+.+...+...|++++|
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhh
Confidence 33344433 445555555555555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.60 E-value=25 Score=38.74 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+.-+...+++.+|.++.++-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677788888887766553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.1 Score=33.07 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 496 YAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 496 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
+.++-++.+...++.|++.+..+.+++|.+.+++..|.++++-...+-- +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 4555666666666777777777777777777777777777777766521 12225555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.49 E-value=15 Score=36.18 Aligned_cols=179 Identities=12% Similarity=0.133 Sum_probs=121.7
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
+.+...+..++..+..+....-...+..+|+..|- +-.++..++.+|..+ ..+.-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 44556777888999999999999999999998763 677899999999988 567788999999988775 55555566
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCc--C---cccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRA--D---LFTYNTLIALYCKKGMHYEALAVQDRMERE-GISPDIVTYNSLIHGF 280 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 280 (591)
...|-+ ++.+.+..+|.+...+=++. + ...|..+... -..+.+..+.+..++... |..--...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 665555 88888888888876542221 1 1244444432 134566666666666543 3333445555666777
Q ss_pred HhcCCHHHHHHHHHHhhc-CCCChhhHHHHHHH
Q 048533 281 CREGRMREARRLFRDIKG-ATPNHVTYTTLIDG 312 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~ 312 (591)
....++.+|++++..+.+ ...|.-+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888899999999987765 33344444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.48 E-value=14 Score=35.67 Aligned_cols=65 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSP---SYCSYSWLVDGYCNKNNEEALLKLLDEFVS 471 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 471 (591)
...++..++..+.+.|.++.|...+..+...+... .+.+.-.-.......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999999998888887643211 333444456667778888888888888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.8 Score=34.83 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLD--QFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
.+..+...|++.|+.+.|++.|.++.+....+. ...+..++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 2334455555555666666665555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.77 Score=42.11 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=37.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
++-|.++|.+++|+++|.......| |+...+.+-+.+|.+..+|..|..-++.+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P---~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP---HNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC---CCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445566777777777777765443 4666666777777777777777766666554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.74 E-value=3.9 Score=40.88 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHH
Q 048533 200 IHLYNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 200 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
..-|..|.++..+.|++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33445555555555555555544443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.46 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++..|...|++++|+..|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 56667777888888888888888877754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=90.15 E-value=19 Score=37.56 Aligned_cols=59 Identities=7% Similarity=0.072 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 97 AQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 97 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+++-+.+.+..+.......++........++..+. .+..+.-+|.++.|.+++...
T Consensus 116 ~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 116 PEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred HHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45555555444445544444433332222223366666 677788889999999988543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.14 E-value=26 Score=36.40 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHH-HHhcCChHHHHHHHHHHhh-------CCCccCH
Q 048533 94 FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIF-YANLKMTQDGLQVFDQMRV-------HNLMPHL 165 (591)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~ 165 (591)
...|.++++.+.+.+........ -.....+ +....+++.|+.+|..+.+ .+ ..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~----------------g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYAL----------------GICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH----------------HHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 45688888887776532111100 1111122 5567889999999998877 44 23
Q ss_pred HhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhhHHHHHHHHhhCCCCcCcccHH
Q 048533 166 HACTVLLNSLAKDR-----LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK-SSDVDKVEKLLCEMEFKDVRADLFTYN 239 (591)
Q Consensus 166 ~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (591)
.+...+..+|.+.. +.+.|..+|....+.|.+ +....-..+..... ..+...|.++|......| ...++-
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHH
Confidence 35667777777643 556688888888887754 44444333322222 245678888888888777 333333
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 240 TLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 240 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
.+..+|.. ..+.+.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 33333322 236677888888887776 3332222222333333 55555555554443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.59 Score=26.58 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++..|...|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45667777888888888888888877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.90 E-value=8.3 Score=32.85 Aligned_cols=90 Identities=9% Similarity=-0.086 Sum_probs=71.1
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD 215 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 215 (591)
+..+|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..+.++.++. .......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 6788999999999999988754333 234556667888999999999999999988765 34444445678899999
Q ss_pred hhhHHHHHHHHhhCC
Q 048533 216 VDKVEKLLCEMEFKD 230 (591)
Q Consensus 216 ~~~a~~~~~~~~~~~ 230 (591)
++.|+.-|+++...+
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998874
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.61 E-value=4.7 Score=33.73 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHH---HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWT---MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
++.|.+-++.....+|. +.+.... .+.-+++-.+..++..+++..... ++..+.+ .|...+++
T Consensus 7 FE~ark~aea~y~~nP~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK--------~eeAL~I---~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISK--------FEEALKI---NPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--------HHHHHHH----TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH--------HHHHHhc---CCchHHHH
Confidence 56677777777666776 6654443 233344444445565566555442 2333332 14444566
Q ss_pred HHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 134 SWLVIFYANLKM-----------TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 134 ~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
..+..+|...+. +++|...|+++... .|+...|+.-+... .+|-+++.++.+.+
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 666666665432 33344444444443 45666666555544 23555666655554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.37 E-value=56 Score=39.22 Aligned_cols=322 Identities=10% Similarity=-0.021 Sum_probs=164.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+++.+-.+.|.+.+|...+|+-. +.+-... .....+..+...|+..++++...-+...-.. .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~--~~ek~~~-------------~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~ 1449 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR--STEKEKE-------------TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---D 1449 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--cccchhH-------------HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---C
Confidence 56778888899999999988841 1111111 1122344455589999999888877764111 1
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH-
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL- 241 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l- 241 (591)
|+ ...-+--....|++..|...|+.+.+.+.+ ....++.++......|.++.+....+...... .+....|+.+
T Consensus 1450 ~s---l~~qil~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1450 PS---LYQQILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLG 1524 (2382)
T ss_pred cc---HHHHHHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHH
Confidence 22 233344456678999999999999887643 46677777777777888888777666655432 2233333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHhhc----------CCCC-hhhH
Q 048533 242 IALYCKKGMHYEALAVQDRMEREGISPDIVTYNS--LIHGFCRE--GRMREARRLFRDIKG----------ATPN-HVTY 306 (591)
Q Consensus 242 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~--g~~~~A~~~~~~~~~----------~~~~-~~~~ 306 (591)
+.+..+.++++....... . . +..+|.. ++....+. .+.-.-....+.++. ..-+ ...|
T Consensus 1525 ~eaaW~l~qwD~~e~~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSY 1597 (2382)
T ss_pred HHHHhhhcchhhhhhhhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHH
Confidence 344456677776666554 1 1 1122221 22222221 111111112222211 0001 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CC-CCChHHHHHHH
Q 048533 307 TTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNE-MNEK----KI-APDNVTCNTLI 380 (591)
Q Consensus 307 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li 380 (591)
..++....-..-......+...-.......+..-|..-+..-....+..+-+--+++ +... +. ..-...|-...
T Consensus 1598 ~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1598 EILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 444433322111111111100000000111111122222211111112221111111 1111 11 11335688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+.....|.++.|....-...+.+ -+..+...+..+...|+...|..++++.++.
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88888999999988877776664 3355666777788899999999999988854
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.89 E-value=13 Score=31.12 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 186 KVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
+.+..+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+ .+.+..+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 4444555666667777777777777777765555444433 2233333333222211 12233344443333332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 266 ISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 266 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (591)
=...+..++..+...|++-+|.++.+...+ .+......++.+....+|...-..+++-...
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~--~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHK--VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC--cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001344455666677777777777766532 2222334444555555554444444444433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.43 E-value=38 Score=36.14 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=107.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChH-------HHHHHHH-HHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 048533 348 LCKEGRIRDANRLLNEMNEKKIAPDNV-------TCNTLIN-AYCKIGDTASAMKVKNRMLEAG----LMLDQFTYKALI 415 (591)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 415 (591)
.....++++|..++.++...-..|+.. .++.+-. .....|+++.|.++-+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678899998888776542222221 2333322 2345688899988888776541 223455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHH--HHHHhcCCHHH--HHHHHHHHHHC---CCC---CCHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFSPSYCSY---SWLV--DGYCNKNNEEA--LLKLLDEFVSR---GLC---VDVSVYR 482 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~g~~~~--a~~~~~~~~~~---~~~---~~~~~~~ 482 (591)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+..+|+... ....+...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7788889999999988877653222233332 2222 33456673322 22333322221 011 1223444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhCCCCcCHHHH--HHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 483 ALIRRFCK-KEKVDYAQRLFNLMQGNGILGDSVIY--TSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 483 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.+..++.+ .+...++..-++........|-...+ ..|+.+....|+.++|...++++...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555544 23333444444444333222222222 36788888999999999999988775
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.41 E-value=14 Score=30.93 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=16.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 396 KNRMLEAGLMLDQFTYKALIHGFCKAKEMDI 426 (591)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 426 (591)
.+.+.+.+++|++..+..++..+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344445555555666666666666555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=5.6 Score=38.61 Aligned_cols=125 Identities=10% Similarity=-0.058 Sum_probs=79.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 380 INAYCKIGDTASAMKVKNRML-EAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNN 458 (591)
Q Consensus 380 i~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (591)
|.--...||...|-+-+.... .....|+.. ......+...|+++.+.+.+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333445677766654444443 332233433 33334466778888888877766542 23445677778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
+++|...-.-|....+. ++.+...........|-++++.-.|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888888776665 55555544444556677888888888887653
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.20 E-value=7 Score=28.74 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=36.1
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 61 CAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 61 ~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
+.-++...+..|+ +..+.+.++..+...|++++|.+.+-.+.+.+
T Consensus 8 ~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4556666777887 89999999999999999999999999888765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.12 E-value=1 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
..++..++..|...|++++|..+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678899999999999999999999876
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.62 E-value=31 Score=34.14 Aligned_cols=238 Identities=8% Similarity=0.085 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCC-CCC-ChHHHHHHHHHHHHcCCHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKE------GRIRDANRLLNEMNEKK-IAP-DNVTCNTLINAYCKIGDTASA 392 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a 392 (591)
....+|++.... .|+...++..|..|... ..+.....+++...+.+ ..+ ....|..+.-.++......++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344667666653 45666676666665432 23445555565554432 222 334555555555555544333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH-H-HHHH
Q 048533 393 MKVKNRMLEAGLMLDQFTYKALIHGFCKA-KEMDIA-KELLFGMLDAGFSPSYCSYSWLVDGYCNKNN-EEAL-L-KLLD 467 (591)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a-~-~~~~ 467 (591)
.. .+...++..+...|..-+....+. .+++-- ..++......-..+....|+... .|+ ++.. + .++.
T Consensus 378 a~---~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 AV---KLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HH---HhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 22 222223344566665555544422 122211 12222222211112222222222 222 1111 1 1222
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHC-C
Q 048533 468 EFVSRGLCVDVSVY-RALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR--AGEPKACSDILDDMYRR-R 543 (591)
Q Consensus 468 ~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~ 543 (591)
...+. ..|+..++ +.++..+.+.|-..+|++.+..+... .+|+...|..++..-.. .-+...++.+|+.|... |
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 22222 23444443 56778888999999999999999987 56777888887765332 22388899999999876 6
Q ss_pred CCCCHHHHHHHHHhhhcch---hHHHHHHHHH
Q 048533 544 LMITLKIYRSFSASYAKDN---EILDLFWSHV 572 (591)
Q Consensus 544 ~~~~~~~~~~li~~~~~~~---~~~~~~~~~~ 572 (591)
.|+..|-..+..=...| +..+.+|-.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 57777776665544444 4445566555
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.50 E-value=28 Score=33.43 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhC--CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
..+.-+...|..+|+++.|++.|.+.+.. +.+..+..|..+|..-...|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35566788888899999999988886543 12224556667777777778887777766666553
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=14 Score=36.18 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR 525 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (591)
-.|...|++-.|.+.|.+.... +.-++..|-.+..+|..
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3466777777777777777664 45577777777777754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.77 Score=25.81 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++.+|.+.|++++|++.|+++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34556777888888888888888887753
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.23 E-value=1.6 Score=26.20 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.+++.+..+|...|++++|..+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888888888888888888876
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.18 E-value=6.4 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++.+-++.+...++.|++.+..+.+++|.+.+++..|+++++-...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444455555556666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.10 E-value=2.2 Score=39.34 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=28.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+.-|+++|.|++|++.|.+..... |.++..+..-+.+|.+..++..|..=.+.++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~------------------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY------------------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC------------------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666666665544422 33444445555555555555555544444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.89 E-value=15 Score=29.76 Aligned_cols=56 Identities=11% Similarity=-0.063 Sum_probs=37.8
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
-...++++++..+++.|.-..+. ....-..-...+...|+|++|+.+|+.+.+.+.
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 33478888888888888766443 222223334456678888888888888887653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.77 E-value=11 Score=28.11 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
+..+-+..+...++.|++.+..+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555566667777777777777777777777777766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.70 E-value=22 Score=34.97 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 450 VDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFC 489 (591)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 489 (591)
.-.|...|++-.|.+.|.+.... +..++..|..+..+|.
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 33455667777777777777654 3446777777777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.59 E-value=28 Score=32.55 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCK--E----GRIRDANRLLNEMNEK 367 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~ 367 (591)
+...+++.+.+.|+.-+..+|.+....... . .....|..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344556666666666555444432222222 1 1234455555555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.55 E-value=83 Score=37.95 Aligned_cols=318 Identities=14% Similarity=0.022 Sum_probs=170.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCc--cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLM--PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
.+..+-.+++.+.+|+..+++-.....+ .....+..+...|..-+++|....+...-.. +...+. -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4566777889999999999884211111 1223344444589999999988877764221 222333 3445677
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSL-IHGFCREGRMREARR 291 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~ 291 (591)
.|++..|...|+.+...+ ++....++.++......|.++..+-..+-...+ ..+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 344777888887777788888777766555443 22233333332 334456677777666
Q ss_pred HHHHhhcCCCChhhHHHH--HHHHHhc--CCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048533 292 LFRDIKGATPNHVTYTTL--IDGYCRA--NDLEEALRLREVMAAK--------GVYPG-VVTYNSILRKLCKEGRIRDAN 358 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~~~~~--------~~~p~-~~~~~~ll~~~~~~~~~~~a~ 358 (591)
... ..+...|... .....+. .+.-.-.+.++.+.+. +..-+ ...|..++....-. +-.
T Consensus 1540 ~l~-----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1540 YLS-----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred hhh-----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence 655 1223333332 2222221 1111111222222221 11100 12333333332211 111
Q ss_pred HHHHHHHhC----CCCCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 048533 359 RLLNEMNEK----KIAPDNVTCNTLINAYCKIGDTASAMKVKNR-MLEA----GLM-LDQFTYKALIHGFCKAKEMDIAK 428 (591)
Q Consensus 359 ~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 428 (591)
...+..... ....+...|..-+..-....+..+-+--+++ +... +.. --..+|....+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111 1111222333332221111112111111111 1111 111 12457778888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 429 ELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
..+-+..+.+ .| ..+--........|+...|+.++++..+.
T Consensus 1691 nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9888887765 33 34555677788999999999999998865
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.51 E-value=13 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHcCChhHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN---GILGDSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 532 (591)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433334444444443333 34555555555554431 1234455555555555555555544
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.42 E-value=7.6 Score=38.83 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=66.8
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++..|.+.+..+....|. .+......++..+.+.|...+|-.++......+ ...
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~p~--~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------------------~se 675 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLAPL--QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------------------SSE 675 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccChh--hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------------------ccC
Confidence 344457888888888877665553 122334567777778888888888777666543 112
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS 174 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 174 (591)
+-++..+.++|....++++|++.|.++.+...+ +...-+.|...
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 334556677777778888888888887776554 44444544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.5 Score=24.87 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
.++..++.++...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888899999999988887764
|
... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.09 E-value=1 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLE 102 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~ 102 (591)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678888999999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.02 E-value=1.4 Score=23.36 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
....+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556677777788888777765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.51 E-value=2.6 Score=25.93 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=20.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
++.+|...|+.+.|.+++++....+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 66778888888888888888876543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.19 E-value=7 Score=32.77 Aligned_cols=111 Identities=6% Similarity=0.028 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcC--
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGY---CNKNNEEALLKLLDEFVSR-----GLCVD-VSVYRALIRRFCKKE-- 492 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g-- 492 (591)
++.|.+..+.....+ +.|...++.-..++ .+.....++.+++++++++ .+.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 445555555543333 33444443333333 3344445566666665542 22333 356666666665432
Q ss_pred --C-------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 493 --K-------VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 493 --~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+ +++|...|++..+ ..|+..+|+.-+.... +|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2 3444444444443 3566666665555542 3455555555554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.19 E-value=48 Score=35.93 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=20.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 176 AKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
......+.+...++.+....-.++....+.++..|++
T Consensus 602 l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 602 LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3444555566666666555444455555555555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.14 E-value=3.1 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 514 VIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.+|..+...|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777888888888888888877763
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.01 E-value=21 Score=28.94 Aligned_cols=59 Identities=7% Similarity=0.006 Sum_probs=44.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+..-...+..+++..++.-+.-.. |..+.+-..-+..+...|++.+|+.+|+.+.+.+.
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLr------------------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLR------------------PNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC------------------CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 333445889999999998887654 33344445556678999999999999999998754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.48 E-value=23 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=59.7
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHW-TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
..+.++.|++.|..++...|. ..+|+ +-+..+.+..+++.+..-.++.++..+. ...
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------------------~vk 79 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------------------LVK 79 (284)
T ss_pred chhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------------------HHH
Confidence 346788999999999987774 54555 5777788888888888888777764321 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
....+.........+++|+..+.+..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 34446667778888888888888873
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.41 E-value=23 Score=32.70 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKG---VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLIN 381 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 381 (591)
+...++..-...++++.+...+-++.... ..|+.. -..+++.+ -.-+.++++.++..=+..|+-||..++..+|+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 33444444444555666665555544321 011111 11122222 22344566666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 048533 382 AYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 382 ~~~~~~~~~~a~~~~~~~~~ 401 (591)
.+.+.+++.+|..+...|..
T Consensus 144 ~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 66666666666655555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.41 E-value=15 Score=31.64 Aligned_cols=71 Identities=14% Similarity=0.012 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 391 SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA---GFSPSYCSYSWLVDGYCNKNNEEAL 462 (591)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 462 (591)
.|++.|-.+...+.--++.....+...| ...+.+++..++.+.++. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444443332333333333222 244555555555555431 1234445555555555555554444
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.73 E-value=78 Score=34.47 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=23.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
.++.....+-+..+++.+....-.++....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355556666677777776665445555556666655543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.32 E-value=13 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
++++++.++..=+..|+-||.++++.+++.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455555555555556666666666666666666666666555555544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.22 E-value=41 Score=30.89 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=78.3
Q ss_pred ChHHHHHHHHHHhh-CCCccCHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 145 MTQDGLQVFDQMRV-HNLMPHLHACTVLLNSLAKD-R-LTDMVWKVYKKMVQ-LGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 145 ~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
.+.+|+++|+.... ..+--|......+++..... + ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 12333666677777777652 2 22223344444442 234456667777788888888888888
Q ss_pred HHHHHHhhC-CCCcCcccHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 048533 221 KLLCEMEFK-DVRADLFTYNTLIALYCKKGMHYEALAVQDR-----MEREGISPDIVTYNSLIH 278 (591)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~ 278 (591)
++++..... +...|...|...|......|+..-..++.++ +++.|+..+...-..+-.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 887776554 4556777788888888888876665555543 334445544444444333
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.01 E-value=1.2 Score=41.03 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=55.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC 168 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 168 (591)
...|.++.|++.|...+..++ ....+|..-.++|.+.+.+..|+.=++...+.+.. +...|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp------------------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~y 185 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP------------------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGY 185 (377)
T ss_pred hcCcchhhhhcccccccccCC------------------chhhhcccccceeeeccCCchhhhhhhhhhccCcc-ccccc
Confidence 345667777777766666542 23344455555666667777777666666665433 33334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
-.--.+....|+|++|...+....+.++.+....
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKLDYDEANSA 219 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhccccHHHHH
Confidence 4434444456677777777777777666544443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.39 E-value=72 Score=33.17 Aligned_cols=147 Identities=18% Similarity=0.081 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCChhhHHHHHHHHhh-------CCCCcCcccHHHHHHHHHhcC-
Q 048533 181 TDMVWKVYKKMVQLGVVANIHLYNVLIHA---CCKSSDVDKVEKLLCEMEF-------KDVRADLFTYNTLIALYCKKG- 249 (591)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g- 249 (591)
...|.+.++...+.|.. ........+.. +....+++.|..+++.... .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 35677777777776543 22222222222 3355678888888877765 33 3345555666665532
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHH----hcCCHH
Q 048533 250 ----MHYEALAVQDRMEREGISPDIVTYNSLIHGFCR-EGRMREARRLFRDIKGATPNHVTYTTLIDGYC----RANDLE 320 (591)
Q Consensus 250 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 320 (591)
+.+.|..++.+.-+.|.+ +.......+..... ..+...|.++|.......-....+ .+..+|. ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-RLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCCcCCCHH
Confidence 455567777666665532 33332222222211 234556666666654311111111 1111111 123456
Q ss_pred HHHHHHHHHHHCC
Q 048533 321 EALRLREVMAAKG 333 (591)
Q Consensus 321 ~a~~~~~~~~~~~ 333 (591)
.|..++.+..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666655
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.33 E-value=12 Score=29.07 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.++.+..+...++.|++.+...-+.+|.+.+|+..|.++|+-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4445555555666777777777777777777777777777766665
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=81.09 E-value=95 Score=34.38 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH----cCC---CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILT----KNK---HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~----~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+.++.|+.+|+.....+|+=...-++.+.++-.+. .+| .+++|+.-|+.+......|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 552 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAP---------------- 552 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCc----------------
Confidence 56999999999999989884444555444332221 112 3445555555543322111
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
--|.--+-.|-+.|++++=++.+..+.++
T Consensus 553 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 553 ---LEYLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred ---hHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 12222333577888888888877777665
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.77 E-value=46 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLL 223 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~ 223 (591)
+......+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566666666666666665544
|
; PDB: 3LKU_E 2WPV_G. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.73 E-value=4.2 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=15.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..+|...|+.+.|++++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=48 Score=30.75 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 048533 532 CSDILDDMY 540 (591)
Q Consensus 532 A~~~~~~~~ 540 (591)
|...+..+.
T Consensus 253 a~p~L~~l~ 261 (280)
T PRK09687 253 LLPVLDTLL 261 (280)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=80.19 E-value=59 Score=31.48 Aligned_cols=126 Identities=9% Similarity=-0.020 Sum_probs=68.9
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLA---KDRLTDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (591)
..|-..+++..+...+.++|+...|.+++++++=.- ..++......+. ..|.. . + .....-|..
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~---r-----L-~~~~~eNR~ 101 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC---R-----L-DYRRPENRQ 101 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc---c-----c-CCccccchH
Confidence 445666778888899999999999999888875310 001111110000 00100 0 0 000111444
Q ss_pred HHHHH---HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 048533 202 LYNVL---IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC-KKGMHYEALAVQDRMER 263 (591)
Q Consensus 202 ~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 263 (591)
.|.++ +..+.+.|-+..|.++.+-+.+.+..-|+......|+.|+ +.++++--+++++....
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44433 3456667777777777777777654445555555565554 55666666666666544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.05 E-value=1.1 Score=36.64 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=20.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHH
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVY 188 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 188 (591)
..+.+.+.+.....+++.+...+...+...++.++..|++.+..+...+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333344444444444444444333333444444444444444333333333
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 5e-19
Identities = 27/202 (13%), Positives = 66/202 (32%), Gaps = 6/202 (2%)
Query: 206 LIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEA---LAVQDRME 262
L+ +D + + + A L V
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 263 REGISPDIVTYNSLIHGFCREGRMREARRLFRDIK--GATPNHVTYTTLIDGYCRANDLE 320
++ + YN+++ G+ R+G +E + +K G TP+ ++Y + R +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 321 EAL-RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTL 379
+ R E M+ +G+ + +L + + ++ +++ + P V + L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 380 INAYCKIGDTASAMKVKNRMLE 401
+ S K+ +
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.2 bits (201), Expect = 2e-16
Identities = 32/258 (12%), Positives = 76/258 (29%), Gaps = 6/258 (2%)
Query: 254 ALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA--TPNHVTYTTLID 311
A ++D + SP L+ + + + A +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 312 GYCRANDLEEA---LRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK 368
+ L A L + K + YN+++ ++G ++ +L + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 369 IAPDNVTCNTLINAYCKIGDTA-SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIA 427
+ PD ++ + + A + + +M + GL L L+ +A +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487
++ P + S L+ K+ + KL + + ++ L R
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315
Query: 488 FCKKEKVDYAQRLFNLMQ 505
C +
Sbjct: 316 VCVVSVEKPTLPSKEVKH 333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.9 bits (177), Expect = 2e-13
Identities = 18/180 (10%), Positives = 52/180 (28%), Gaps = 6/180 (3%)
Query: 152 VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKV---YKKMVQLGVVANIHLYNVLIH 208
Q L + + + Q + + +YN ++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALA-VQDRMEREGIS 267
+ ++ +L ++ + DL +Y + ++ + ++M +EG+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
Query: 268 PDIVTYNSLIHGFCREGRMREARRLFRDIK--GATPNHVTYTTLIDGYCRANDLEEALRL 325
+ L+ R ++ ++ P V + L+ + +L
Sbjct: 234 LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.9 bits (177), Expect = 2e-13
Identities = 25/209 (11%), Positives = 64/209 (30%), Gaps = 4/209 (1%)
Query: 315 RANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374
R + A L + P +L++ + + + ++ +++
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 375 TCNTLINAYCKIGDTASAMKV---KNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELL 431
A + + + +L Y A++ G+ + +L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 432 FGMLDAGFSPSYCSYSWLVDGYCNKNN-EEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490
F + DAG +P SY+ + ++ + + L++ GL + L+ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSL 519
+ ++ L V + L
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 2e-10
Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 1/145 (0%)
Query: 150 LQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209
L V R + L ++ A+ + V + G+ ++ Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 210 CCKSSDVDK-VEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP 268
+ +E+ L +M + ++ L++ + + V+ P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 269 DIVTYNSLIHGFCREGRMREARRLF 293
V + L+ + +L
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 9e-09
Identities = 26/247 (10%), Positives = 70/247 (28%), Gaps = 36/247 (14%)
Query: 320 EEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRI---RDANRLLNEMNEKKIAPDNVTC 376
+ +R++ + A + + ++ R+L E R+ + A L + + +P
Sbjct: 36 TQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQL 95
Query: 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436
L+ + +A L Q A ++ +A
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA--------- 146
Query: 437 AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY 496
LL + + + + +Y A++ + ++
Sbjct: 147 -----------------------HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAG-EPKACSDILDDMYRRRLMITLKIYRSFS 555
+ +++ G+ D + Y + R + L+ M + L +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 556 ASYAKDN 562
+ +
Sbjct: 244 SEEDRAT 250
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 74/521 (14%), Positives = 155/521 (29%), Gaps = 134/521 (25%)
Query: 90 KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN---LKMT 146
N K Q+M + I LS + + + + D + L W ++ K
Sbjct: 31 DNFDCKDVQDMPKSI-----LSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 147 QDGLQ-----VFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH 201
++ L+ + ++ P + T + +DRL + +V+ K
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMM--TRMYIE-QRDRLYNDN-QVFAK----------- 128
Query: 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALA---VQ 258
YNV + K+ + L E+ + + G +A
Sbjct: 129 -YNV-----SRLQPYLKLRQALLELR----------PAKNVLIDGVLGSGKTWVALDVCL 172
Query: 259 DRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYC---- 314
+ + + + +L + E + ++L I PN +T+ D
Sbjct: 173 SY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI---DPN---WTSRSDHSSNIKL 225
Query: 315 RANDLEEALRLREVMAAKGVYPGVVTYNS--ILRKLCKEGRIRDANRLLNEMNEKKIAPD 372
R + ++ LR ++ +K Y N +L + N K
Sbjct: 226 RIHSIQA--ELRRLLKSK-PYE-----NCLLVLLNVQ---------------NAKAWNAF 262
Query: 373 NVTCNTLI-NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDI-AKEL 430
N++C L+ + ++ D SA + L+ M + + K L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-----------TLTPDEVKSLLLKYL 311
Query: 431 LFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC-------VDVSVYRA 483
+ + L ++ E + GL V+
Sbjct: 312 --DCRPQDLPREVLTTNPRR------------LSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSV-IYTSLAYAYWRAGEPKACSDILDDMYRR 542
+I + +++F+ + + S I T L W +++ +++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 543 RLMI------TLKIYRSFSASYAKDNEILDLFWSH--VVDR 575
L+ T+ I + K L H +VD
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYAL---HRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 6e-09
Identities = 90/573 (15%), Positives = 174/573 (30%), Gaps = 161/573 (28%)
Query: 73 NYKHSLQSHWTMIHILTKN-----KHFKSAQNMLEKIALRDFL-------STPSVLNALV 120
Y + + K + + + L ++ + S + + V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 121 ----KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR--VHNLMPHL-----HACT 169
K+ D IF+ NLK V + ++ ++ + P+ H+
Sbjct: 171 CLSYKVQCKMDFK--------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 170 VLLN-SLAKDRLTD-MVWKVYKKMVQLGVVANIHLYNVL----IHACCK-------SSDV 216
+ L + L + K Y+ L V+ N+ + CK
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVT 278
Query: 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKK-GMHYEALAVQDRMEREGISPDIVTYNS 275
D + D + T + + +L K + L E +P + S
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRL---S 331
Query: 276 LIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVY 335
+I R+G ++ + N TT+I+ N LE A R++ V+
Sbjct: 332 IIAESIRDGLATWDN--WKHV-----NCDKLTTIIESS--LNVLEPAE-YRKMFDRLSVF 381
Query: 336 P-GV-VTYNSILRKLCKEGRIRDANRLLNEMNEKKIA---PDNVTCNTLINAYCKIGDTA 390
P + +L + + D ++N++++ + P T ++ + Y ++
Sbjct: 382 PPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKL 439
Query: 391 SAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLV 450
+R + +D Y + F D+ L Y YS +
Sbjct: 440 ENEYALHRSI-----VDH--YN-IPKTFDSD---DLIPPYLDQ---------Y-FYSHI- 477
Query: 451 DGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL 510
G+ KN E + + F R + +D RF L
Sbjct: 478 -GHHLKNIEHP--ERMTLF--RMVFLDF--------RF---------------------L 503
Query: 511 GDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSF----SASY-AKDNEIL 565
+ + S A+ A IL+ + LK Y+ + Y N IL
Sbjct: 504 EQKIRHDSTAW--------NASGSILN------TLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 566 DLFWSH-----------VVDRGLMSKH--IFKE 585
D ++ LM++ IF+E
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 62/549 (11%), Positives = 139/549 (25%), Gaps = 168/549 (30%)
Query: 51 YNCCHIPSLSCAFFKWAE-SAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDF 109
++C + + + E + K ++ + L +K + Q +E++ ++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRINY 91
Query: 110 LSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV----------- 158
+++ + P + ++ + QVF + V
Sbjct: 92 ---KFLMSPIKTEQRQPSMMT------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 159 --HNLMPH----LHA---C--TVLLNSLAKD--RLTDMVWKVY--------KKMVQLGVV 197
L P + T + + M +K++ L ++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTY----NTLIAL---YCKKGM 250
L + SD KL + L N L+ L K
Sbjct: 203 QK--LLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAK-- 257
Query: 251 HYEALAVQ--------DRMEREGISPDIVTYNSLIH---GFCREGRMREARRLFRDIKGA 299
+ A + + + +S T+ SL H + E + L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLD- 312
Query: 300 TPNHVTYTTLIDGYCRANDL-EEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDAN 358
CR DL E P + SI+ + ++G +
Sbjct: 313 --------------CRPQDLPREV---------LTTNPRRL---SIIAESIRDGLAT-WD 345
Query: 359 RLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGF 418
+ +K + ++ +LE F ++ F
Sbjct: 346 NWKHVNCDKL---------------------TTIIESSLNVLEPAEYRKMFDRLSV---F 381
Query: 419 CKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC--- 475
I LL ++ W + + ++ ++++ L
Sbjct: 382 --PPSAHIPTILL-SLI------------W-----FDVIKSDVMV-VVNKLHKYSLVEKQ 420
Query: 476 VDVSVYR--ALIRRFCKKEKVDYA--QRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKA 531
S ++ K + +YA + + + Y + +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVD-----------------HYNIPKTFDSDD 463
Query: 532 CSDILDDMY 540
D Y
Sbjct: 464 LIPPYLDQY 472
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 591 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.93 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.76 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.21 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.79 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.31 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.1 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.99 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.97 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.91 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.66 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.49 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.48 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.27 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.6 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.85 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.78 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.38 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.06 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.53 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.21 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 92.17 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.06 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.56 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.46 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.48 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.5 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.07 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.04 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.76 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 86.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.29 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.0 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 84.84 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.53 | |
| 2ion_A | 152 | PDCD4, programmed cell death 4, PDCD4; alpha-helic | 83.71 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.67 | |
| 2zu6_B | 307 | Programmed cell death protein 4; protein-protein c | 81.26 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=336.36 Aligned_cols=453 Identities=11% Similarity=0.012 Sum_probs=291.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+.+|+++....+ +...+..++.+|.+.|++++|+.+|+++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 143 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-------------------NPNDAFWLAQVYCCTGDYARAKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-------------------CchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 455566677777777777777777777664321 1134555667777777777777777776
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHccCChhhHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL---------------GVVANIHLYNVLIHACCKSSDVDKVEK 221 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~ 221 (591)
... .++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+
T Consensus 144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 544 346667777777777777777777777643221 123346677777777777777777777
Q ss_pred HHHHHhhCCCCcCcccHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHH
Q 048533 222 LLCEMEFKDVRADLFTYNTL--------------------------------------IALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+|+++...+ +.+...+..+ +..|.+.|++++|.++|+++.+
T Consensus 222 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 222 CYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 777776653 1223333333 4445556667777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 264 EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYN 342 (591)
Q Consensus 264 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 342 (591)
. +++..+++.++..|.+.|++++|.++|+++.+..| +..++..++.++.+.|++++|..+++.+.+.. +.+..++.
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 45666777777777777777777777777655333 45666777777777777777777777766442 33566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence 67777777777777777777766542 2255667777777777777777777777766654 235666667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSR----GLCVD--VSVYRALIRRFCKKEKVDY 496 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~ 496 (591)
++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777776543 335666777777777777777777777776654 44455 5667777777777777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 048533 497 AQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYA 559 (591)
Q Consensus 497 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (591)
|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.|+++.+.... +...+..+..+|.
T Consensus 535 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 535 AIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 777777766643 335666777777777777777777777777765432 4555555555553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=330.68 Aligned_cols=447 Identities=11% Similarity=-0.036 Sum_probs=389.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 3456788999999999999999999999864 567789999999999999999999999998653 568899999999
Q ss_pred HHHccCChhhHHHHHHHHhhC---------------CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFK---------------DVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 999999999999999954322 23456899999999999999999999999999886432 33333
Q ss_pred HHH--------------------------------------HHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 048533 274 NSL--------------------------------------IHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCR 315 (591)
Q Consensus 274 ~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~ 315 (591)
..+ +..|.+.|++++|.++|+++.+..++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 333 445667899999999999998766889999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048533 316 ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKV 395 (591)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 395 (591)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999865 3377789999999999999999999999998753 45788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048533 396 KNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC 475 (591)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (591)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..+.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998864 3468899999999999999999999999999865 457889999999999999999999999999987544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 476 VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLK 549 (591)
Q Consensus 476 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (591)
++.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.++.
T Consensus 474 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 474 -DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 8999999999999999999999999999875 66777 6899999999999999999999999999976 34788
Q ss_pred HHHHHHHhhhcchhHHHH--HHHHHHhcCCCChHHHHHH
Q 048533 550 IYRSFSASYAKDNEILDL--FWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 550 ~~~~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 586 (591)
+|..+..+|.+.|+..++ +++++.+.+.-....+..+
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 999999999999998875 5777777766666555443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-29 Score=242.98 Aligned_cols=356 Identities=10% Similarity=-0.006 Sum_probs=207.3
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
+.|++++|+..|+.+.+..|+ +..++..++.++.+.|++++|...++.+.+.+ |.+..+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------------------p~~~~~ 69 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------PLLAEA 69 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCchHH
Confidence 347777788877777776666 66666777777777777777777777776643 334456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+..++..|.+.|++++|+..|+++.+.++. +..+|..+..++.+.|++++|.+.|+++.+.++. +...+..+...+..
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 667777777777777777777777766543 5556777777777777777777777777665433 44555566666666
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRL 292 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 292 (591)
.|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...
T Consensus 148 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677777777776666542 23455666666666666666666666666665432 1345555556666666666666666
Q ss_pred HHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048533 293 FRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAP 371 (591)
Q Consensus 293 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (591)
+++.....|+ ..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 6555543333 4455555555555555555555555555542 1134444555555555555555555555544431 22
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 372 DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD 436 (591)
Q Consensus 372 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 436 (591)
+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++++
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444444444444444444332 12234444444444444444444444444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-28 Score=240.17 Aligned_cols=381 Identities=14% Similarity=0.017 Sum_probs=195.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+..+.+.|++++|++.++.+.+.. |.+..++..+...+.+.|++++|...++...+.++. +
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~------------------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~ 66 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE------------------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-L 66 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-c
Confidence 344445555555555555554432 222333444444555555555555555555544332 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
..+|..+..++.+.|++++|+..|+++.+..+. +...|..+..++.+.|++++|.+.|+++...+ +.+...+..+...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445555555555555555555555555444322 33344445555555555555555555544432 1223334444444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 323 (591)
+...|++++|.+.|+++.+. .|+ ..+|..+...+...|++++|.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-----------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIET-----------------------------------QPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh-----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44445555555544444443 332 344444444555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 190 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 190 HHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555544432 1234444555555555555555555555554432 1234455555555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 404 LMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
+.+..++..+...+.+.|++++|...++++++.. +.+..++..+...+...|++++|...++++.+..+ .+..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 344 (388)
T 1w3b_A 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 1234555566666666666666666666665543 34555666666666666666666666666665432 24556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
++..+.+.|++++|...|+++.+.. +.+...|..+..++...|
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 6666666666666666666666531 223456666666665554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=249.57 Aligned_cols=206 Identities=13% Similarity=0.199 Sum_probs=150.5
Q ss_pred HHHHHHHHHhCCCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 048533 357 ANRLLNEMNEKKIAPDN-VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE---------MDI 426 (591)
Q Consensus 357 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 426 (591)
+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455555444333 24566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 427 AKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 507 NGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 507 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888888888888888888887654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=243.83 Aligned_cols=186 Identities=19% Similarity=0.235 Sum_probs=104.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCChHH
Q 048533 305 TYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGR---------IRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 305 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
.++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554432 3455555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 376 CNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN 455 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (591)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-25 Score=224.21 Aligned_cols=439 Identities=8% Similarity=-0.077 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+...+..+.+.|++++|+..|+++...++ +..++..++.+|.+.|++++|+..++++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-------------------DPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 45677889999999999999999999988652 34567778889999999999999999999
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
+.++. +..++..+..++...|++++|...|+.+.+.+.. +......++..+........+.+.+..+...+..|+...
T Consensus 67 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 67 ELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred ccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 88765 7788999999999999999999999999887653 444444455444443333333333322222111111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhc-----C-
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGI---------SPDIVTYNSLIHGFCR---EGRMREARRLFRDIKG-----A- 299 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~- 299 (591)
+..................+...+..... +.+...+......+.. .|++++|...|+++.. .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 11111111111111111111111111111 1124455555555554 7999999999998876 3
Q ss_pred ---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048533 300 ---------TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA 370 (591)
Q Consensus 300 ---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (591)
+.+..++..+...+...|++++|...++.+.+.+ |+...+..+...+...|++++|...++.+.+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 301 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-S 301 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-T
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-c
Confidence 2234567788889999999999999999998864 347788888999999999999999999998864 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 371 PDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLV 450 (591)
Q Consensus 371 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 450 (591)
.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 4678899999999999999999999999988753 367788889999999999999999999998754 34567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048533 451 DGYCNKNNEEALLKLLDEFVSRGLC-VD----VSVYRALIRRFCK---KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYA 522 (591)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 522 (591)
..+...|++++|...++++.+..+. ++ ..++..+...+.. .|++++|...++++.+.. +.+..++..+..+
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 9999999999999999998875322 11 3488899999999 999999999999998853 3356888999999
Q ss_pred HHHcCChhHHHHHHHHHHHCC
Q 048533 523 YWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~ 543 (591)
|.+.|++++|...|+++.+..
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999999965
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=221.65 Aligned_cols=436 Identities=9% Similarity=-0.089 Sum_probs=320.1
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+++..| +..++..++.++.+.|++++|+..++++.+.+
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 69 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---------------- 69 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----------------
Confidence 3445666677999999999999999876 48889999999999999999999999998865
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYN 204 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (591)
|.+..++..++.+|.+.|++++|+..|+++.+.++. +......++..+........+.+.+..+...+..|+...+.
T Consensus 70 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 70 --PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 445577888999999999999999999999998753 54555555555554443444444443332222222221111
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhCCC---------CcCcccHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC-
Q 048533 205 VLIHACCKSSDVDKVEKLLCEMEFKDV---------RADLFTYNTLIALYCK---KGMHYEALAVQDRMER-----EGI- 266 (591)
Q Consensus 205 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~- 266 (591)
.-...............+...+..... +.+...+......+.. .|++++|...|+++.+ ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 111111111122222222222211111 1124444555555554 8999999999999887 311
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048533 267 -------SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVV 339 (591)
Q Consensus 267 -------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 339 (591)
+.+..++..+...+...|++++|...++++....|+...+..+..++...|++++|...++.+.... +.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 305 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSS 305 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHH
Confidence 1235577888889999999999999999988766667778888899999999999999999998764 33667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 340 TYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC 419 (591)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (591)
.+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH
Confidence 888888999999999999999999988743 367788899999999999999999999998764 335778888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 420 KAKEMDIAKELLFGMLDAGFS-PS----YCSYSWLVDGYCN---KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK 491 (591)
Q Consensus 420 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 491 (591)
..|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++.+.+..+. +..++..+..++...
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 999999999999998864211 11 3478888999999 99999999999999987543 788899999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 048533 492 EKVDYAQRLFNLMQGN 507 (591)
Q Consensus 492 g~~~~a~~~~~~~~~~ 507 (591)
|++++|...|+++.+.
T Consensus 463 g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 463 EDIDEAITLFEESADL 478 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999985
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-23 Score=210.26 Aligned_cols=304 Identities=12% Similarity=0.049 Sum_probs=167.2
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.|........++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..|+++.+.+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------- 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------- 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------
Confidence 4444444555555566667777777777777666555 56666677777777777777777777766644
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCH---HhHHHH------------HHHHHhcCCh
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHL---HACTVL------------LNSLAKDRLT 181 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~ 181 (591)
|.+..++..++.+|.+.|++++|++.|+++.+.++. +. .++..+ ...+...|++
T Consensus 91 ----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 91 ----------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 233455666666777777777777777777665432 22 344433 2335555666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 182 DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRM 261 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 261 (591)
+.|+..|+.+.+..+. +..++..+..++.+.|++++|...|+++...+ +.+..+|..++.++...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666554332 45555555666666666666666666655432 234455555666666666666666666655
Q ss_pred HHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhcCCCC-----hhhHHHHHHHHHhcCCHHHHHH
Q 048533 262 EREGISPDIVTYNSL------------IHGFCREGRMREARRLFRDIKGATPN-----HVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 262 ~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~ 324 (591)
.+... .+...+..+ ...+...|++++|...|+++....|+ ...+..+..++.+.|++++|..
T Consensus 238 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 238 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54321 122223222 44455555555555555555443333 2234444555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
.++.+.+.. +.+...+..+..+|...|++++|...++.+.+
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555544431 22344455555555555555555555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-23 Score=214.64 Aligned_cols=435 Identities=10% Similarity=-0.015 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+.+.|++++|+..|+++...+ |.++.++..++.+|.+.|++++|++.|+++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 86 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD------------------PNEPVFYSNISACYISTGDLEKVIEFTTKAL 86 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567789999999999999999999999865 4456778889999999999999999999999
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC--CCcCc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD--VRADL 235 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~ 235 (591)
+.++. +..++..+..++...|++++|...|+ .....+.+. ...+..+...+....|...++.+.... ..+..
T Consensus 87 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 87 EIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred hcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 98765 78899999999999999999999996 443322222 223445555666788999999886641 11112
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHhhcCCCCh---
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV-TYNSLIHGFC--------REGRMREARRLFRDIKGATPNH--- 303 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~--- 303 (591)
......+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++....|+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 22334455556666666665554433322 22222 2222222222 2257899999999998766652
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 048533 304 -----VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNT 378 (591)
Q Consensus 304 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (591)
.++..+...+...|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 34666777888899999999999999886 4567888888888999999999999999998864 336788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNN 458 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (591)
+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999988753 356788889999999999999999999998864 4456788889999999999
Q ss_pred HHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 048533 459 EEALLKLLDEFVSRGL-----CVDVSVYRALIRRFCKK----------EKVDYAQRLFNLMQGNGILGDSVIYTSLAYAY 523 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 523 (591)
+++|...++++.+..+ ......+..+...+... |++++|...++++.+.. +.+...+..+..+|
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 9999999999886421 11223345556677777 99999999999998853 34668899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCC
Q 048533 524 WRAGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~ 544 (591)
.+.|++++|...|+++.+...
T Consensus 473 ~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-23 Score=208.05 Aligned_cols=317 Identities=12% Similarity=0.021 Sum_probs=229.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
..+...|..+....|. +..++..++..+.+.|++++|+.+|+++.... |.+..++..++
T Consensus 9 ~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~l~ 67 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------PDNYIAYYRRA 67 (450)
T ss_dssp --------------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHH
T ss_pred ccccccccccccccHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHH
Confidence 3445555555554555 78888999999999999999999999998754 34567788899
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHH--------
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI---HLYNVL-------- 206 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l-------- 206 (591)
.+|...|++++|+..|+++.+.++. +..++..+..++.+.|++++|.+.|+.+.+.++. +. ..+..+
T Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 145 (450)
T 2y4t_A 68 TVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQR 145 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 7889999999999999999999999999987543 33 455555
Q ss_pred ----HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 207 ----IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR 282 (591)
Q Consensus 207 ----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 282 (591)
...+...|++++|...|+++.... +.+..++..++.++...|++++|...|+++.+.. +.+..++..++..|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344778888888888888887654 4467778888888888888888888888887653 2367788888888888
Q ss_pred cCCHHHHHHHHHHhhcCCCCh-hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHH
Q 048533 283 EGRMREARRLFRDIKGATPNH-VTYTTL------------IDGYCRANDLEEALRLREVMAAKGVYPG-----VVTYNSI 344 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~-~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~l 344 (591)
.|++++|...|+++.+..|+. ..+..+ ...+...|++++|...|+.+.+.. |+ ...+..+
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHH
Confidence 888888888888887655543 333333 566666777777777777766542 33 2355666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 345 LRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
...+.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...++++.+.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666777777777777666542 235566666666677777777777777666664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-23 Score=212.17 Aligned_cols=428 Identities=11% Similarity=-0.028 Sum_probs=325.5
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|++.|+++...+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 89 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-------------- 89 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3455667777789999999999999998887 88999999999999999999999999998865
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------C
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG------V 196 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 196 (591)
|.+..++..++.+|...|++++|+..|+ .....+.+. ...+..+...+....|...++.+.... .
T Consensus 90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 90 ----PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred ----CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 4456778889999999999999999996 444333222 222344555566678999999986642 2
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc-cHHHHHHHHH--------hcCChhHHHHHHHHHHHCCCC
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF-TYNTLIALYC--------KKGMHYEALAVQDRMEREGIS 267 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~--------~~g~~~~a~~~~~~~~~~~~~ 267 (591)
.|+.. .+..+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+....
T Consensus 161 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~ 234 (537)
T 3fp2_A 161 LPSNT----SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV 234 (537)
T ss_dssp CCCHH----HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC
T ss_pred cchHh----HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 23332 334455566666555444333221 11111 2222222221 235789999999999876322
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048533 268 PD-------IVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVT 340 (591)
Q Consensus 268 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 340 (591)
+ ..++..+...+...|++++|...++.+....|+...+..+...+...|++++|...++.+.+.. +.+..+
T Consensus 235 -~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 312 (537)
T 3fp2_A 235 -DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPT 312 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHH
T ss_pred -cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHH
Confidence 2 2356777788889999999999999998877888888999999999999999999999998764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 341 YNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK 420 (591)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 420 (591)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 9999999999999999999999998864 3367889999999999999999999999998875 3467788999999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 421 AKEMDIAKELLFGMLDAG-----FSPSYCSYSWLVDGYCNK----------NNEEALLKLLDEFVSRGLCVDVSVYRALI 485 (591)
Q Consensus 421 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 485 (591)
.|++++|...++++++.. .......+......+... |++++|...++++.+..+. +..++..+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 469 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLA 469 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 999999999999988532 111223344556677777 9999999999999987543 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.+|...|++++|...|+++.+.
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999985
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-20 Score=178.40 Aligned_cols=323 Identities=12% Similarity=0.003 Sum_probs=174.0
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 67 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----------------- 67 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------
Confidence 3445555567888888888888777665 67777778888888888888888887777654
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC---ccCHHhHHHH------------HHHHHhcCChhHHHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL---MPHLHACTVL------------LNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~ 190 (591)
|.+..++..++..|...|++++|+..|+++.+.++ . +...+..+ ...+...|+++.|.+.+++
T Consensus 68 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 68 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33445667777778888888888888888777654 2 33344333 3444555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+.+..+. +...+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+.... +.
T Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 222 (359)
T 3ieg_A 146 ILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 222 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-ch
Confidence 5544332 44445555555555555555555555554442 234444555555555555555555555554443211 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGV----VTYNSILR 346 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~ 346 (591)
.++..+... . .......+...+.+.|++++|...++.+.+.... +. ..+..+..
T Consensus 223 ~~~~~~~~~-----------------~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 223 RCFAHYKQV-----------------K----KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp HHHHHHHHH-----------------H----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 111111000 0 0000011234455555666666655555543211 12 12333445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
++...|++++|...++...+.. +.+...+..+...+...|++++|...|+++.+..+ .+...+..+..+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 349 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKA 349 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 5555666666666666555542 22455555666666666666666666666655431 134444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-17 Score=167.68 Aligned_cols=382 Identities=13% Similarity=0.040 Sum_probs=296.4
Q ss_pred HHHHHHHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhH
Q 048533 148 DGLQVFDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK----SSDVDKV 219 (591)
Q Consensus 148 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a 219 (591)
.++..+.+..+.| +..++..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566555543 66777777777777 788888888888888764 56677777777877 7888888
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR----EGRMREARR 291 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 291 (591)
.+.|++....| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888887765 56677778888877 778888988888888764 56677778887876 778899999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 048533 292 LFRDIKGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNE 363 (591)
Q Consensus 292 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 363 (591)
+|++.... .+..++..+...|.. .++.++|.++|++..+.| +...+..+...|.. .+++++|...|+.
T Consensus 173 ~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 173 WYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 88887653 467777778888877 788999999998888765 56677777777775 7888999999998
Q ss_pred HHhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048533 364 MNEKKIAPDNVTCNTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA-----KEMDIAKELLFGM 434 (591)
Q Consensus 364 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 434 (591)
..+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...+++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88764 56677777777877 788999999999887764 566777788888777 8999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 048533 435 LDAGFSPSYCSYSWLVDGYCNKN---NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 507 (591)
.+.+ +...+..+...|...| +.++|.+++++..+.+ ++..+..+...|.. .+++++|..+|++..+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 8865 4566777777777756 7889999999998874 67888888888888 78999999999999886
Q ss_pred CCCcCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHhhhc
Q 048533 508 GILGDSVIYTSLAYAYWR----AGEPKACSDILDDMYRRRLM-I-TLKIYRSFSASYAK 560 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~ 560 (591)
| +...+..+...|.. .+++++|...|++..+.+.. | ++.....+...+.+
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 5 57778888888888 88999999999999988743 2 33344444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=174.69 Aligned_cols=333 Identities=12% Similarity=0.033 Sum_probs=234.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+...|++++|+..|+++...+ |.+..++..++..|...|++++|+..|+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------PDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 35667788888888888888888888887754 334566777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV--ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 234 (591)
.+.++. +..++..+...+...|+++.|...|+.+.+..+. .+...+..+.....
T Consensus 64 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 119 (359)
T 3ieg_A 64 IALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------- 119 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------
Confidence 877654 6677888888888888888888888888876431 12333333321100
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGY 313 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 313 (591)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++....| +..++..+...+
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 01122334556666777777777766665432 3456666666777777777777777777665444 355666666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----HHHH
Q 048533 314 CRANDLEEALRLREVMAAKGVYPGVVTY------------NSILRKLCKEGRIRDANRLLNEMNEKKIAPDN----VTCN 377 (591)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 377 (591)
...|++++|...++...+.. +.+...+ ..+...+.+.|++++|...++.+.+.... +. ..+.
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 276 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKE 276 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHH
Confidence 77777777777777666542 1122222 23366688999999999999999886432 33 2355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..+..+....
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence 67889999999999999999998874 3478899999999999999999999999999865 33466666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-18 Score=170.16 Aligned_cols=367 Identities=14% Similarity=0.024 Sum_probs=309.9
Q ss_pred CccchHHHHHHHHHh----cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC
Q 048533 128 GNSHVLSWLVIFYAN----LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVAN 199 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 199 (591)
.++.....+...|.. .+++++|+..|++..+.+ +..++..|...|.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 345667778888888 899999999999999874 66788999999998 899999999999999875 5
Q ss_pred HHHHHHHHHHHHc----cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHH
Q 048533 200 IHLYNVLIHACCK----SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIV 271 (591)
Q Consensus 200 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~ 271 (591)
...+..+...|.. .+++++|...|++....| +...+..+...|.. .+++++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6677778888888 789999999999998876 66788888888887 789999999999998874 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 272 TYNSLIHGFCR----EGRMREARRLFRDIKGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAKGVYPGVVTYNS 343 (591)
Q Consensus 272 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 343 (591)
.+..+...|.. .+++++|.++|++.... .+..++..+...|.. .+++++|..+|++..+.| +...+..
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 88889999988 89999999999998753 456777888888876 889999999999998875 5667777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 344 ILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI-----GDTASAMKVKNRMLEAGLMLDQFTYKAL 414 (591)
Q Consensus 344 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (591)
+...+.. .++.++|...|+...+.| +...+..+...|... ++.++|...|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 7777877 899999999999998875 667888888888887 89999999999999875 56778888
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 415 IHGFCKAK---EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRR 487 (591)
Q Consensus 415 ~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 487 (591)
...|...| ++++|.+.+++..+.+ +...+..+...|.. .+++++|...++++.+.+ ++..+..+...
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~ 408 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 88888766 7899999999999864 67788889999988 899999999999999875 67888999999
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCC-c-CHHHHHHHHHH
Q 048533 488 FCK----KEKVDYAQRLFNLMQGNGIL-G-DSVIYTSLAYA 522 (591)
Q Consensus 488 ~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~ 522 (591)
|.. .+++++|...|++..+.+.. | +......+...
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 988 89999999999999987533 2 33444444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-18 Score=173.59 Aligned_cols=427 Identities=10% Similarity=0.050 Sum_probs=300.9
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhc
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANL 143 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (591)
|+.+++.+|. +..+|..++. +.+.|++++|..+|+++.... |.+..++...+..+.+.
T Consensus 2 le~al~~~P~---~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~------------------P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 2 AEKKLEENPY---DLDAWSILIR-EAQNQPIDKARKTYERLVAQF------------------PSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHHCTT---CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHHHT
T ss_pred hhhHhhhCCC---CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHhc
Confidence 5666777777 8889888888 478899999999999998754 55667788889999999
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHc----
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL-AKDRLTDMVWK----VYKKMVQL-GVVA-NIHLYNVLIHACCK---- 212 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---- 212 (591)
|++++|..+|+++++.. |+...|...+... ...|+.+.|.+ +|+...+. |..| +...|...+....+
T Consensus 60 ~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 99999999999999875 5777888777544 35677777665 77776543 4433 45677777776654
Q ss_pred -----cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 213 -----SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 213 -----~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
.|+++.|..+|++.... +.+ ...|..........|. .+...++. ...++
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~--P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~ 193 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVN--PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRD 193 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTS--CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHH
Confidence 67888999999998873 211 1222222211101110 00111110 12344
Q ss_pred HHHHHHHHHHhh------c-----CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCH
Q 048533 286 MREARRLFRDIK------G-----ATPN--------HVTYTTLIDGYCRA----NDL----EEALRLREVMAAKGVYPGV 338 (591)
Q Consensus 286 ~~~A~~~~~~~~------~-----~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~p~~ 338 (591)
+..|..++.... . ..|+ ...|...+...... ++. +++..+|+++.... +.+.
T Consensus 194 ~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~ 272 (530)
T 2ooe_A 194 YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHP 272 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCH
Confidence 555665555421 1 1333 13454444333221 232 46777888887752 3467
Q ss_pred HHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 339 VTYNSILRKLCK-------EGRIR-------DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 339 ~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
..|......+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+...
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc
Confidence 778777777765 68876 8999999998732344678899999999999999999999999998632
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 405 MLDQ-FTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG-YCNKNNEEALLKLLDEFVSRGLCVDVSVYR 482 (591)
Q Consensus 405 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (591)
.+. ..|..++..+.+.|++++|..+|++.++.. +.+...+...... +...|+.++|..+|+.+++..+ -++..|.
T Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~ 429 (530)
T 2ooe_A 353 -IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 429 (530)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred -cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHH
Confidence 233 578888888889999999999999998753 2233333332222 3468999999999999998643 3788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CcC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 483 ALIRRFCKKEKVDYAQRLFNLMQGNGI-LGD--SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 483 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.++..+...|+.++|+.+|++....+. .|+ ...|...+......|+.+.+..+++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998632 332 358888898889999999999999999885
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-19 Score=169.15 Aligned_cols=283 Identities=11% Similarity=-0.026 Sum_probs=171.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|+.+|+++...+ |.+..++..++..+...|++++|+.+++++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 82 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------------------PFHASCLPVHIGTLVELNKANELFYLSHKL 82 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55566677777777777777777777776654 333445555666677777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
.+.++. +..++..+...+...| +++.|.+.|+++.+..+. +...+..+...+...|++++|...+++..... +.+.
T Consensus 83 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 159 (330)
T 3hym_B 83 VDLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCH 159 (330)
T ss_dssp HHHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCS
T ss_pred HHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccH
Confidence 766544 5566667777777777 677777777777665543 45566666667777777777777777666553 2344
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC----------CCChhh
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA----------TPNHVT 305 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~ 305 (591)
..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++.... .....+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 556666666666677777776666666543 224556666666666666666666666665431 122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAY 383 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 383 (591)
+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555666666666666665555442 1234445555555555555555555555555432 12334444444444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-17 Score=169.08 Aligned_cols=411 Identities=9% Similarity=-0.014 Sum_probs=280.5
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
|.+..++..++. +.+.|++++|..+|+++++..+. +...|..++..+.+.|+++.|.++|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 455666777777 47788889999999998887655 77788888888888888999999998888764 466677666
Q ss_pred HHHH-HccCChhhHHH----HHHHHhh-CCCCc-CcccHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCH
Q 048533 207 IHAC-CKSSDVDKVEK----LLCEMEF-KDVRA-DLFTYNTLIALYCK---------KGMHYEALAVQDRMEREGISPDI 270 (591)
Q Consensus 207 l~~~-~~~g~~~~a~~----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~ 270 (591)
+... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6433 34577777665 6665543 23332 34566666665544 57777888888877763111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC----
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVM------AAKG---VYPG---- 337 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~------~~~~---~~p~---- 337 (591)
..|..........|. ..+..++. ...++++.|..++... .+.. ++|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 222222211111111 11111111 1234566777666652 2221 2443
Q ss_pred ----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChHHHHHHHHHHHH-------cCCHH-------H
Q 048533 338 ----VVTYNSILRKLCKE----GRI----RDANRLLNEMNEKKIAPDNVTCNTLINAYCK-------IGDTA-------S 391 (591)
Q Consensus 338 ----~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~ 391 (591)
...|...+...... ++. ..+..+|++.+.. .+.+...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 24555555433322 232 4788899998876 34478889888888876 69987 9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 392 AMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPS-Y-CSYSWLVDGYCNKNNEEALLKLLDEF 469 (591)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 469 (591)
|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. |+ . ..|..++..+.+.|+.++|.++|+++
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999863224468889999999999999999999999999853 43 3 57888888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC
Q 048533 470 VSRGLCVDVSVYRALIRR-FCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRL-MIT 547 (591)
Q Consensus 470 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 547 (591)
.+.... +...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...+. .|+
T Consensus 383 l~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 986332 33444333322 346899999999999998852 33678999999999999999999999999999743 232
Q ss_pred --HHHHHHHHHhhhcchhHHH
Q 048533 548 --LKIYRSFSASYAKDNEILD 566 (591)
Q Consensus 548 --~~~~~~li~~~~~~~~~~~ 566 (591)
...|..++....+.|+...
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHH
Confidence 4478777887777776554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=169.64 Aligned_cols=285 Identities=11% Similarity=-0.051 Sum_probs=241.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|..+++++.+.+
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------- 86 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLY---------------- 86 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------------
Confidence 33444555569999999999999998887 67777788899999999999999999998865
Q ss_pred CCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
+.+..++..++..|...| ++++|++.|+++.+.++. +..++..+...+...|++++|...++++.+..+. +...+
T Consensus 87 --~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 162 (330)
T 3hym_B 87 --PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPM 162 (330)
T ss_dssp --TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHH
T ss_pred --cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHH
Confidence 445677888999999999 999999999999988765 6788999999999999999999999999987655 56677
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG--------ISPDIVTYNS 275 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~ 275 (591)
..+...+...|++++|...+++..... +.+..++..+...+...|++++|...+++..+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 779999999999999999999998874 4567889999999999999999999999987641 1334678899
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 048533 276 LIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL-CKEGR 353 (591)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~ 353 (591)
+...+...|++++|...+++.....| +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++ ...|+
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 99999999999999999999987444 57788999999999999999999999998764 33667777777776 34555
Q ss_pred H
Q 048533 354 I 354 (591)
Q Consensus 354 ~ 354 (591)
.
T Consensus 321 ~ 321 (330)
T 3hym_B 321 S 321 (330)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-15 Score=158.95 Aligned_cols=479 Identities=13% Similarity=0.136 Sum_probs=338.4
Q ss_pred CCCCCChHHHHHHHHhhhcCC-CChhH---------HHHHHHHHhhhCCCCCCCHHHH------HHHHHHHHcCCCchHH
Q 048533 34 IASSLTSTAIHKVLLNLYNCC-HIPSL---------SCAFFKWAESAVPNYKHSLQSH------WTMIHILTKNKHFKSA 97 (591)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~-~~~~~---------A~~~f~~~~~~~p~~~~~~~~~------~~l~~~~~~~g~~~~A 97 (591)
+...-+...++..|+.+|-.. ++|+. ...+=+.+.+++|.. ...+| -.|+.+..++|.|+..
T Consensus 866 ~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~l--a~iay~~g~~d~eli~vt~~n~l~k~~ 943 (1630)
T 1xi4_A 866 IHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHL--ACVAYERGQCDLELINVCNENSLFKSL 943 (1630)
T ss_pred HhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcch--HHHHhcccCCcHHHHHHHhcchhHHHH
Confidence 334455677888889888754 45554 223444455555541 01111 1356666666666654
Q ss_pred HHHHHHHHHcCCCCc-------hHHHHHHH----hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC--ccC
Q 048533 98 QNMLEKIALRDFLST-------PSVLNALV----KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL--MPH 164 (591)
Q Consensus 98 ~~~~~~~~~~~~~~~-------~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~ 164 (591)
-+.+-+ +.++..| +..-..++ .+.-....+++-....+.+|...|.+.+|+++|+++.-.+. .-+
T Consensus 944 arylv~--r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n 1021 (1630)
T 1xi4_A 944 SRYLVR--RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEH 1021 (1630)
T ss_pred HHHHHH--hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCccccc
Confidence 333311 1122112 11222232 22222344566678889999999999999999999985422 124
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHH
Q 048533 165 LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIAL 244 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 244 (591)
....+.++.+..+. +..+..+..++.... + ...+...+...|.+++|..+|++... .....+.++.
T Consensus 1022 ~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie- 1087 (1630)
T 1xi4_A 1022 RNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH-
Confidence 56677777777776 556666666665432 2 34477888899999999999999631 1222233322
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALR 324 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 324 (591)
..|++++|.++.++.. +..+|..+..++...|++++|+..|.+. .|...|..++.++.+.|++++|.+
T Consensus 1088 --~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred --HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHH
Confidence 7789999999998652 5788999999999999999999999775 467788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048533 325 LREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGL 404 (591)
Q Consensus 325 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 404 (591)
.+....+.. +++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999888764 33333445888999999988644442 2 346677888999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 405 MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRAL 484 (591)
Q Consensus 405 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 484 (591)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 47899999999999999999999877 35678989999999999999998876643 2367788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 048533 485 IRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRA--GEPKACSDILDDMYRRRLMI------TLKIYRSFSA 556 (591)
Q Consensus 485 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~ 556 (591)
+..|.+.|.+++|+.+++.....+ +-....|+-+..+|.+- ++.-++.++|..-.. +++ ....|..+.-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHH
Confidence 999999999999999999888653 33446777777777664 344555555553332 222 3457889999
Q ss_pred hhhcchhHHHHHHHHHHh
Q 048533 557 SYAKDNEILDLFWSHVVD 574 (591)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~ 574 (591)
.|.+.|+++.|.--+|..
T Consensus 1364 LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1364 LYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHhcccHHHHHHHHHhc
Confidence 999999988877555533
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=172.86 Aligned_cols=304 Identities=12% Similarity=-0.010 Sum_probs=186.1
Q ss_pred CCChhHHHH-HHHHHhhhCCCCCC-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 54 CHIPSLSCA-FFKWAESAVPNYKH-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 54 ~~~~~~A~~-~f~~~~~~~p~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
.|++++|+. .|+.+....|..+. +...+..++..+.+.|++++|+..|+++.+.+ |.+..
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~ 99 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD------------------PKHME 99 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------TTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------CCCHH
Confidence 367788887 88877766655332 24556777888888888888888888877654 33455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|...|++++|+..|+++.+.++. +..++..+...+...|+++.|...++.+.+..+. +...+..+...
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-- 175 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-- 175 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH--
Confidence 6777777888888888888888888777654 6777777778888888888888888887776543 22222111000
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP-DIVTYNSLIHGFCREGRMREAR 290 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 290 (591)
. ... . ....+..+...+ ..|++++|...++++.+..... +..++..+...+...|++++|.
T Consensus 176 -----~-------~~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 176 -----A-------GGA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp ---------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----h-------hhh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 0 000 0 000111122222 6667777777777666543221 3566666777777777777777
Q ss_pred HHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048533 291 RLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKI 369 (591)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (591)
..++++....| +..++..+..++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++.+.+...
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777665334 35566667777777777777777777766543 23456667777777777777777777776655321
Q ss_pred C----------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048533 370 A----------PDNVTCNTLINAYCKIGDTASAMKVKNR 398 (591)
Q Consensus 370 ~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 398 (591)
. ....+|..+..++...|+.++|..++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1 1156777777777777777777776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=167.84 Aligned_cols=309 Identities=10% Similarity=-0.047 Sum_probs=226.9
Q ss_pred HHcCCCchHHHH-HHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQN-MLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+...|++++|+. .+++.....+. .+..+...+..++..|.+.|++++|+..|+++.+.++. +..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 99 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEE--------------NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99 (368)
T ss_dssp -----------CHHHHCCCCCCSS--------------CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCC--------------CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 334578888887 77766543221 12234566778888899999999999999999888655 777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHH
Q 048533 167 ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYC 246 (591)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 246 (591)
++..+..++...|+++.|...|+++.+.++. +..++..+...+...|++++|...++++.... +.+...+..+...
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-- 175 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-- 175 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH--
Confidence 8888888899999999999999988887654 67788888888888888888888888888764 2222222211110
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHH
Q 048533 247 KKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN---HVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~ 323 (591)
.. . ..+ ...+..+...+ ..|++++|...++++....|+ ..++..+...+...|++++|.
T Consensus 176 -----~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 176 -----AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp ---------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 00 0 001 11122233333 889999999999999875555 678899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
..++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+..
T Consensus 238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998763 3467889999999999999999999999998863 3467899999999999999999999999987653
Q ss_pred CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 404 LML----------DQFTYKALIHGFCKAKEMDIAKELLFGML 435 (591)
Q Consensus 404 ~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 435 (591)
... ...+|..+..++...|++++|..++.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 221 26889999999999999999999887544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-15 Score=157.53 Aligned_cols=411 Identities=15% Similarity=0.172 Sum_probs=283.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+++-.-..+++|...|.+.+|+++++++...+. .+.++.+.-+.++.+..+. +..+..++.++.
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s---------------~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---------------VFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC---------------cccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 344445678888999999999999999984321 1122333444455555544 445555555555
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
... + ...+...+...|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..
T Consensus 1048 d~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A 1048 DNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred hhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence 422 1 33477778888888888888888621 2222233332 6778888888888663 467
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRA 316 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 316 (591)
+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+++....+..++....+.++.+|.+.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh
Confidence 8888888888889999988888653 3677788888888888999999988888776555555556688888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 048533 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+++++...+. + .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+
T Consensus 1181 ~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1181 NRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred cCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 8887544332 2 346666777888888888899998888875 36888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCV 476 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (591)
++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....+ +-
T Consensus 1245 rKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1245 RKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 766 36688888888888888888888766543 3456677788888888889999998888887654 33
Q ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCc------CHHHHHHHHHHHHHcCChhHHHHH-------------
Q 048533 477 DVSVYRALIRRFCKK--EKVDYAQRLFNLMQGNGILG------DSVIYTSLAYAYWRAGEPKACSDI------------- 535 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~------------- 535 (591)
....|+.+...|++. ++..++.++|..-. +++| +...|..++-.|.+.|+++.|...
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~ 1390 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 1390 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHH
Confidence 556677777777654 33444444444322 2232 456788888888888888888732
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhhhcch
Q 048533 536 LDDMYRRRLMITLKIYRSFSASYAKDN 562 (591)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~li~~~~~~~ 562 (591)
|+.... -..++..|-..+..|...+
T Consensus 1391 Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1391 FKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222111 1235666666666666443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=169.15 Aligned_cols=267 Identities=13% Similarity=0.025 Sum_probs=199.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...++.++..+.+.|++++|+..|+++...+ |.+..++..++.+|...|++++|+..|+++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------PGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35557788888888888888888888888754 344567777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA---------NIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
.+.++. +..++..+..++...|++++|+..|+++.+..+.. ....+..+...+...|++++|...++++.
T Consensus 126 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 126 LELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred HhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 887654 67788888888888888888888888887754220 11223345778888899999999998888
Q ss_pred hCCCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhh
Q 048533 228 FKDVR-ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVT 305 (591)
Q Consensus 228 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 305 (591)
..... .+..++..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|+++....|+ ..+
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 76421 156788888888889999999999998888763 336778888899999999999999999888775554 777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVY-----------PGVVTYNSILRKLCKEGRIRDANRLLNE 363 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (591)
+..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+...
T Consensus 284 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888888899999999999998887764211 1256788888888889998888877664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-17 Score=165.01 Aligned_cols=391 Identities=9% Similarity=-0.075 Sum_probs=225.5
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVP------NYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV 115 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 115 (591)
.+...|+.++...|++++|++.|+.+++..+ ..+....+|..++.+|...|++++|...++++........
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~--- 128 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--- 128 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc---
Confidence 3556778888888999999999999976411 1233567888999999999999999999998865311000
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHh--cCChHHHHHHHHHHhhCCCccCHHhHHHHHHH---HHhcCChhHHHHHHHH
Q 048533 116 LNALVKIHDDPDGNSHVLSWLVIFYAN--LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS---LAKDRLTDMVWKVYKK 190 (591)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~ 190 (591)
.......+.++...+.++.. .+++++|++.|+++++.++. +...+..+..+ +...++.+.|++.+++
T Consensus 129 -------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 129 -------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp -------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred -------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 00112334566666666555 45799999999999998765 66666666555 3456788899999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCK----SSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI 266 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 266 (591)
..+.++. +..++..+...+.. .|++++|.+++++..... +.+..++..+...+...|++++|...+++..+..+
T Consensus 201 al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 201 AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 9887654 56666655555444 467889999999987764 45677888999999999999999999999988632
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 267 SPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILR 346 (591)
Q Consensus 267 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 346 (591)
-+..++..+...|...+....+.. .... .......+..+.|...++...... +.+...+..+..
T Consensus 279 -~~~~~~~~lg~~y~~~~~~~~~~~--------~~~~------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 279 -NNAYLHCQIGCCYRAKVFQVMNLR--------ENGM------YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHhhhHH--------HHHH------HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 256677777666543211100000 0000 000011122445555555554432 123334455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 347 KLCKEGRIRDANRLLNEMNEKKIAPDNV--TCNTLIN-AYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKE 423 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 423 (591)
.+...|++++|...|++.++....+... .+..+.. .....|+.++|+..|++..+.. |+..... +.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KM 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HH
Confidence 5666666666666666655543222111 1112221 1234566666666666665542 2221111 11
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 424 MDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG 473 (591)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 473 (591)
...+..+++..+..+ +.+..+|..+..+|...|++++|++.|+++++.+
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 223334444444432 3445666777777777777777777777777654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=161.56 Aligned_cols=264 Identities=9% Similarity=-0.067 Sum_probs=180.1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
.+...+..++..+.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|+++.+..+. +..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 44556888899999999999999999999988765 7888999999999999999999999999887654 678888899
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccH----------HHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTY----------NTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSL 276 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l 276 (591)
.++...|++++|...++++.... +.+...+ ..+...+...|++++|...++++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999987753 1122222 23466777777777777777777765322 146677777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 277 IHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 277 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 355 (591)
...+...|++++|...|+++....| +..+|..+..+|...|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777665333 35666777777777777777777777766642 224566666666666677777
Q ss_pred HHHHHHHHHHhCCCC-----------CChHHHHHHHHHHHHcCCHHHHHHH
Q 048533 356 DANRLLNEMNEKKIA-----------PDNVTCNTLINAYCKIGDTASAMKV 395 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~ 395 (591)
+|...|+++.+.... .+...|..+..++...|+.+.+..+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 777776666543110 0134455555555555555544443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-16 Score=160.42 Aligned_cols=393 Identities=11% Similarity=-0.064 Sum_probs=256.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
++...+|+.++.++...|++++|++.|++..+.. .. .......+....+|..++.+|...|++++|+..++
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~--------~~-~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ 118 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELI--------QQ-EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD 118 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HH-HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------Hh-cCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3446778899999999999999999999876521 00 00001123344567889999999999999999999
Q ss_pred HHhhCC-----C-c-cCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHccCChhhHHHH
Q 048533 155 QMRVHN-----L-M-PHLHACTVLLNSLAK--DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA---CCKSSDVDKVEKL 222 (591)
Q Consensus 155 ~~~~~~-----~-~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~ 222 (591)
++.+.. . . ....++.....++.. .+++++|+..|++..+..+. +...+..+..+ +...++.++|++.
T Consensus 119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 876531 1 1 134566666655554 45789999999999987654 55555555544 3456788899999
Q ss_pred HHHHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 223 LCEMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+++..+.+ +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++...
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 98887764 3355566666555544 467788999999887764 33677888899999999999999999999887
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHH
Q 048533 299 ATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCN 377 (591)
Q Consensus 299 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (591)
..|+ ..++..+..+|...+... .... ...........+..++|...++...+.. +.+...+.
T Consensus 276 ~~p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 276 YIPNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 6665 556666666553321111 1110 0000011112234678889998887763 33556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQF--TYKALIH-GFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC 454 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (591)
.+...+...|++++|...|++..+....+... .+..+.. .....|++++|...+.+.++.. |+.....
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~------- 409 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE------- 409 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH-------
Confidence 89999999999999999999998875433221 2233332 3457899999999999999854 4432222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048533 455 NKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 508 (591)
+....+.++++...+.++. ++.+|..++.+|...|++++|++.|++.++.+
T Consensus 410 --~~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred --HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2234456667777766543 78899999999999999999999999999854
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=160.03 Aligned_cols=268 Identities=14% Similarity=-0.000 Sum_probs=144.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++...+ +.+
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~ 88 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------PKD 88 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------cCC
Confidence 333447777777777777776665 66666777777777777777777777776643 233
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL-IH 208 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~ 208 (591)
..++..++..|...|++++|++.++++.+..+. +...+..+...+ |+......+ ..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 145 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSED 145 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHh
Confidence 445666667777777777777777777665433 222222220000 000000011 11
Q ss_pred -HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 209 -ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 209 -~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Confidence 2444555555555555554442 2244455555555555555555555555555442 123455555555566666666
Q ss_pred HHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHH
Q 048533 288 EARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP-----------GVVTYNSILRKLCKEGRIR 355 (591)
Q Consensus 288 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~ll~~~~~~~~~~ 355 (591)
+|...++++....| +..++..+..++...|++++|.+.++++.+..... +...+..+..++.+.|+.+
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 66666655544333 34455555566666666666666665555432110 2445555666666666666
Q ss_pred HHHHHHHH
Q 048533 356 DANRLLNE 363 (591)
Q Consensus 356 ~a~~~~~~ 363 (591)
+|..+++.
T Consensus 304 ~A~~~~~~ 311 (327)
T 3cv0_A 304 LVELTYAQ 311 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 66666553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-18 Score=160.15 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=131.8
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+.+.|++++|.+.++++.. +.+|+.++.++.+.|++++|++.|.+. +|..+
T Consensus 13 l~~~~~ld~A~~fae~~~~-----------------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~ 63 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNE-----------------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSS 63 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCC-----------------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHH
Confidence 4467889999999888732 247888999999999999999999753 47778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHh
Q 048533 168 CTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCK 247 (591)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 247 (591)
|..++.++...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|..
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-------CC--------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHH
Confidence 999999999999999999977777663 3457788899999999999999888874 3677799999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048533 248 KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLRE 327 (591)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 327 (591)
.|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|.....
T Consensus 135 ~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 135 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp --CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred cCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999976 36889999999999999999999988 378999999999999999999966554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCC
Q 048533 328 VMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKI--GDTASAMKVKNRMLEAGLM 405 (591)
Q Consensus 328 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~ 405 (591)
.+ ...+.....++..|.+.|++++|..+++..+... +-....|+.+.-+|++- ++..+.++.|.. +.+++
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~ 273 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIP 273 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCc
Confidence 32 2344456678889999999999999999988764 44567777777777764 233444444331 11222
Q ss_pred C------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 406 L------DQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 406 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
| +...|..+...|.+.++++.|....-
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 2 34568888888999999998877443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-17 Score=153.91 Aligned_cols=232 Identities=10% Similarity=-0.052 Sum_probs=144.4
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..+...|++++|+.+|+++.+..+. +..++..+..++...|+++.|...++++.+..+. +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 4566788889999999999999999999988765 7888999999999999999999999999987654 6788888999
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL--------------IA-LYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
.+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.+... .+..++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 9999999999999999988764 2334444433 11 24444555555555555544321 134445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEG 352 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 352 (591)
..+...+...|++++|...++++....| +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555555443222 23344444444444444444444444444332 113334444444444444
Q ss_pred CHHHHHHHHHHHH
Q 048533 353 RIRDANRLLNEMN 365 (591)
Q Consensus 353 ~~~~a~~~~~~~~ 365 (591)
++++|...++++.
T Consensus 255 ~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 255 QYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=157.52 Aligned_cols=283 Identities=13% Similarity=0.096 Sum_probs=135.8
Q ss_pred HhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 141 ANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
-+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35688999999999982 2349999999999999999999999763 47779999999999999999999
Q ss_pred HHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC
Q 048533 221 KLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT 300 (591)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 300 (591)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877664 4567889999999999999999998884 367789999999999999999999999977
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 048533 301 PNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI 380 (591)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 380 (591)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 48999999999999999999999988 2789999999999999999999665544 223555566799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 048533 381 NAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKA--KEMDIAKELLFGMLDAGFSP------SYCSYSWLVDG 452 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~ 452 (591)
..|.+.|.+++|..+++...... +.....|+.+..+|++- +++.+..+.|..- .+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 45677888887777754 3444555544422 22222 34567888899
Q ss_pred HHhcCCHHHHHHH
Q 048533 453 YCNKNNEEALLKL 465 (591)
Q Consensus 453 ~~~~g~~~~a~~~ 465 (591)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=146.87 Aligned_cols=252 Identities=13% Similarity=0.106 Sum_probs=175.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
....|++.+|+..++.....++.+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 555788888888888776655443345666677888888888888876644 1334666777777888888888888
Q ss_pred HHHHHHHhhCCCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
.+.++++...+..| +...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.|+++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888877665333 455566667778888888888888876 34667777788888888888888888888776
Q ss_pred CCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHH
Q 048533 299 ATPNHVTYT---TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVT 375 (591)
Q Consensus 299 ~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (591)
..|+....+ .++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++.++.. +-+..+
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 556543221 2233344457777888777777765 34466777777777777777777777777777653 236667
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHCC
Q 048533 376 CNTLINAYCKIGDTAS-AMKVKNRMLEAG 403 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~-a~~~~~~~~~~~ 403 (591)
+..++..+...|+.++ +.++++++.+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7777777777777654 456777776653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-16 Score=145.58 Aligned_cols=246 Identities=11% Similarity=0.072 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048533 283 EGRMREARRLFRDIKGATPNH--VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRL 360 (591)
Q Consensus 283 ~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 360 (591)
.|++..|+..++......|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.++|.+.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 444444444444443333322 1223334444444554444443322 1123334444444444444455555555
Q ss_pred HHHHHhCCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048533 361 LNEMNEKKIAP-DNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF 439 (591)
Q Consensus 361 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 439 (591)
++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...++++.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 55544433222 233334444444555555555554443 2344444455555555555555555555554432
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHH
Q 048533 440 SPSYCSY---SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIY 516 (591)
Q Consensus 440 ~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 516 (591)
|+.... ...+..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...++++.+.. +-+..++
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 221110 111122223355555555555555542 2245555555555555555555555555555432 2234455
Q ss_pred HHHHHHHHHcCChhH-HHHHHHHHHHC
Q 048533 517 TSLAYAYWRAGEPKA-CSDILDDMYRR 542 (591)
Q Consensus 517 ~~l~~~~~~~g~~~~-A~~~~~~~~~~ 542 (591)
..++.++...|+.++ +.++++++.+.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 555555555555543 34555555553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=146.37 Aligned_cols=245 Identities=11% Similarity=0.016 Sum_probs=167.8
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH-FKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
.+...++.++...|++++|+..|+.+++..|+ +..+|+.++.++...|+ +++|+..|++++..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------------ 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------ 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC------------
Confidence 34555566666667788888888888777776 67777777888888886 888888888777755
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI 200 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (591)
|.+..++..+..+|...|++++|+..|+++++.++. +..+|..+..++...|++++|+..|+++++.++. +.
T Consensus 163 ------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~ 234 (382)
T 2h6f_A 163 ------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NN 234 (382)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CH
T ss_pred ------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CH
Confidence 445566777777777788888888888888777665 7777777777777788888888888887777655 66
Q ss_pred HHHHHHHHHHHc-cCChhhH-----HHHHHHHhhCCCCcCcccHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHH
Q 048533 201 HLYNVLIHACCK-SSDVDKV-----EKLLCEMEFKDVRADLFTYNTLIALYCKKG--MHYEALAVQDRMEREGISPDIVT 272 (591)
Q Consensus 201 ~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~ 272 (591)
..|+.+..++.. .|..++| +..+++.+... +-+...|+.+..++...| ++++|++.+.++ +. .+.+...
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~a 311 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHH
Confidence 777777777777 4554666 36676666653 335566777777777766 567777777766 22 2334566
Q ss_pred HHHHHHHHHhcC---------CHHHHHHHHHHh-hcCCCC-hhhHHHHHHH
Q 048533 273 YNSLIHGFCREG---------RMREARRLFRDI-KGATPN-HVTYTTLIDG 312 (591)
Q Consensus 273 ~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~-~~~~~~li~~ 312 (591)
+..+...|.+.| ..++|.++++++ .+..|. ...|..+...
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 666777776653 246777777777 555554 3344444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-15 Score=146.96 Aligned_cols=374 Identities=15% Similarity=0.080 Sum_probs=236.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT---DMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
++..+.+.|++++|+++|+++.+.| +..++..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667888999999999999998875 344566677777777887 8999999998864 44555566664555
Q ss_pred cC-----ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 213 SS-----DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE---ALAVQDRMEREGISPDIVTYNSLIHGFCREG 284 (591)
Q Consensus 213 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 284 (591)
.| ++++|...|++....| +...+..|...|...+..+. +.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 54 7889999999998876 44588888888887665443 455555555444 3445666777777777
Q ss_pred C----HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CC
Q 048533 285 R----MREARRLFRDIKGATPNHVTYTTLIDGYCRAN---DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKE----GR 353 (591)
Q Consensus 285 ~----~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~ 353 (591)
. .+.+..+++......| .++..+...|...| +.++|++.|+...+.| .++...+..+...|... ++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CcccCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 4 4455555555544334 37888888888889 8999999999998887 34555555666666544 68
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHH
Q 048533 354 IRDANRLLNEMNEKKIAPDNVTCNTLINA-Y--CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK-----EMD 425 (591)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 425 (591)
.++|...|+... . -+...+..+... + ...++.++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 889999998887 3 356667777766 3 45788888988888888765 6677777777776 44 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 426 IAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYA 497 (591)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 497 (591)
+|...|++.. . -+......+...|.. ..+.++|..+|++..+.|. +.....|...|.. ..++.+|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888888777 3 356666667666665 3478888888888877653 3445566666653 4578888
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
..+|+...+.|.+ +.......+......++..+|..+.++-.+
T Consensus 378 ~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888776532 222222222222223345556666555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-16 Score=136.76 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+.+.|++++|+..|+++.+.+ |.+..++..++.++.+.|++++|+..|+++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------PQDPEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666677777777777777777777766543 344556666666777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-----------RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCE 225 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 225 (591)
++.++. +..++..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|...|++
T Consensus 66 l~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 66 VARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 666544 556666666666665 5555555555554444332 334444444444444444444444444
Q ss_pred HhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 226 MEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRD 295 (591)
Q Consensus 226 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 295 (591)
..+.+ .+...+..+..++...|++++|+..|++..+..+ .+...+..+...+...|++++|...+++
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44433 2344444444444444444444444444444311 1333444444444444444444444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-15 Score=147.92 Aligned_cols=343 Identities=10% Similarity=-0.019 Sum_probs=166.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHF---KSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
...+.|++++|+..|+.+.+. + +..++..++.++...|.. ++|+..|++....
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------------------- 67 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC--------------------------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------------
Confidence 333447777888888777653 2 345556666666667777 7777777776542
Q ss_pred CCccchHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC
Q 048533 127 DGNSHVLSWLVIFYANLK-----MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDM---VWKVYKKMVQLGVVA 198 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~ 198 (591)
++..+..+...+...+ ++++|+..|++..+.|.. .++..|...|...+..+. +.+.+......|
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--- 139 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---
Confidence 2234455555444444 567777777777776533 256666666665544333 344444444333
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKG---MHYEALAVQDRMEREGISPDIVTYNS 275 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~ 275 (591)
+......+...|...+.++++......+...-...+..++..+...|...| +.++|++.|++..+.|. ++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 233444555666666644444333222211111123336666666666666 66677777777666653 34444455
Q ss_pred HHHHHHhc----CCHHHHHHHHHHhhcCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 276 LIHGFCRE----GRMREARRLFRDIKGATPNHVTYTTLIDG-Y--CRANDLEEALRLREVMAAKGVYPGVVTYNSILRKL 348 (591)
Q Consensus 276 l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 348 (591)
+...|... +++++|..+|++.. .-+...+..+... + ...+++++|.++|++..+.| +...+..+...|
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 55555443 56666666666665 3344555555554 3 34566666666666666554 444555555554
Q ss_pred HhcC-----CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 349 CKEG-----RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC 419 (591)
Q Consensus 349 ~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 419 (591)
. .| ++++|...|+... .| +...+..|...|.. ..+.++|...|++..+.| +......+...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 4 33 5666666665555 22 44445555444443 225555555555555443 1223333333333
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 048533 420 K----AKEMDIAKELLFGMLDAG 438 (591)
Q Consensus 420 ~----~~~~~~a~~~~~~~~~~~ 438 (591)
. .++.++|...+....+.|
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCC
Confidence 2 234445555554444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=137.54 Aligned_cols=194 Identities=13% Similarity=-0.046 Sum_probs=160.2
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
...++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++.+.+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 69 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVART--------------- 69 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 344566666779999999999999998887 89999999999999999999999999999865
Q ss_pred CCCCCccchHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANL-----------KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
|.+...+..++.+|.+. |++++|+..|++.++.++. +..++..+..++...|++++|+..|++..
T Consensus 70 ---P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 70 ---PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44566788888999999 9999999999999998766 78899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 193 QLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 193 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
+.+ .+...+..+..++...|++++|...|++..... |.+...+..+...+...|++++|+..|++.-
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 988 588999999999999999999999999998874 4467788999999999999999999988754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-15 Score=142.03 Aligned_cols=247 Identities=12% Similarity=0.041 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC-hHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM-TQDGLQVFDQ 155 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~ 155 (591)
...++..++.++.+.|++++|+..+++++..+ |.+..++..++.++...|+ +++|+..|++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 35677888889999999999999999988865 4556778888888999996 9999999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
+++.++. +..+|..+..++...|++++|+..|+++++.++. +...|..+..++.+.|++++|+..+++++..+ +.+.
T Consensus 158 al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~ 234 (382)
T 2h6f_A 158 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 234 (382)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCH
Confidence 9988876 8888999999999999999999999999988766 78888888888999999999999999988875 4467
Q ss_pred ccHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcCCC-ChhhH
Q 048533 236 FTYNTLIALYCK-KGMHYEA-----LAVQDRMEREGISPDIVTYNSLIHGFCREG--RMREARRLFRDIKGATP-NHVTY 306 (591)
Q Consensus 236 ~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~-~~~~~ 306 (591)
.+|+.+..++.. .|..++| +..|++.+..... +...|+.+...+...| ++++|.+.+..+ ...| +...+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 788888888888 5555777 4777777765322 5667777777777777 578888888777 4344 45667
Q ss_pred HHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCC-HHHHHHHHHHH
Q 048533 307 TTLIDGYCRAN---------DLEEALRLREVM-AAKGVYPG-VVTYNSILRKL 348 (591)
Q Consensus 307 ~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~p~-~~~~~~ll~~~ 348 (591)
..+..+|.+.| ..++|.++|+.+ .+. .|. ...|..+...+
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 77777777753 257888888887 554 232 33444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=132.16 Aligned_cols=225 Identities=15% Similarity=0.068 Sum_probs=154.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hHHHH
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA--PD----NVTCN 377 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 377 (591)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++...+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666666554 45556666666666666666666666665543211 11 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 378 TLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKN 457 (591)
Q Consensus 378 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (591)
.+...+...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777776652 332 23455667778888887777643 234556777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILD 537 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (591)
++++|...++++.+..+. +..++..+..++...|++++|...++++.+.. +.+...|..+..++.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888776443 67788888888888888888888888887753 3356778888888888888888888888
Q ss_pred HHHHC
Q 048533 538 DMYRR 542 (591)
Q Consensus 538 ~~~~~ 542 (591)
++.+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88775
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=162.97 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGMLD---AGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
-..||+++|.+|++.|++++|.++|.+|.+ .|..||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999987764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 048533 484 LIRRFCKKEK-VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMIT------LKIYRSFSA 556 (591)
Q Consensus 484 l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~ 556 (591)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ ..++.|+ ..+-..|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 478889999999999999999999888766553 344444444 3345544 224445667
Q ss_pred hhhcchh
Q 048533 557 SYAKDNE 563 (591)
Q Consensus 557 ~~~~~~~ 563 (591)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7777654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=166.74 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=130.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQ---LGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
...+|+.+|++|++.|++++|.++|.+|.+ .|+.||..+||.||.+|++.|++++|.++|++|...|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC------ChhhHHHHHHH
Q 048533 241 LIALYCKKGMH-YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP------NHVTYTTLIDG 312 (591)
Q Consensus 241 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~~~li~~ 312 (591)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+ +++..+++.. ..| ...+...+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 789999999999999999999999987665543 3333333321 222 24445556667
Q ss_pred HHhcC---------CHHHHHHHHHHH
Q 048533 313 YCRAN---------DLEEALRLREVM 329 (591)
Q Consensus 313 ~~~~g---------~~~~a~~~~~~~ 329 (591)
|.+.+ ..++-...|++-
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHH
Confidence 76655 235555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=139.93 Aligned_cols=250 Identities=10% Similarity=-0.039 Sum_probs=179.9
Q ss_pred cCCCChhHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNY-KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
...+++++|+..|+.+.+..|.. +.+..++..++.++...|++++|...|+++...+ +.+.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~ 77 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------PDMP 77 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC------------------CCcH
Confidence 34578999999999998754321 1246777889999999999999999999988764 3455
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
.++..++..|...|++++|+..|+++.+.++. +..++..+..++...|++++|...|+++.+..+ +.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 67888888999999999999999999987654 678888899999999999999999999988653 333344444555
Q ss_pred HccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 048533 211 CKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP---DIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~ 287 (591)
...|++++|...+++..... +++...+ .++..+...++.++|...+.+........ +..++..+...+...|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 67788999998887776653 3344443 46666777778888888888776542110 1456777777888888888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 288 EARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+|...|++.....|+.. .....++...|++++|++.+
T Consensus 233 ~A~~~~~~al~~~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANNVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 88888888776555432 22244555667777766655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=131.02 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=92.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--------hhhHHH
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN--------HVTYTT 308 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~ 308 (591)
.+..+...+...|++++|...|++..+.. .+..++..+...+...|++++|...+++.....|+ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555554443 34444555555555555555555555544331111 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCC
Q 048533 309 LIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGD 388 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 388 (591)
+...+...|++++|...++++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 444555555555555555544443 1221 12333344444444444444431 1122333344444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDE 468 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (591)
+++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444443332 1123333334444444444444444444443322 11233333333333334444444443333
Q ss_pred HH
Q 048533 469 FV 470 (591)
Q Consensus 469 ~~ 470 (591)
+.
T Consensus 233 a~ 234 (258)
T 3uq3_A 233 AR 234 (258)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=132.84 Aligned_cols=234 Identities=9% Similarity=-0.030 Sum_probs=139.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.... . .+.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~--------------~~~ 71 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-N--------------ATK 71 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-C--------------TTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-C--------------chh
Confidence 33444557777777777777766665 55566677777777777777777777766521 0 111
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
....++..++..|...|++++|++.|+++.+.++. +..++..+...+...|++++|+..|++..+..+. +...+..+.
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~ 149 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELG 149 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHH
Confidence 12234566667777777777777777777766544 5566667777777777777777777776665332 455555555
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGM---HYEALAVQDRMEREG-ISPD------IVTYNSLI 277 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~ 277 (591)
..+...+++++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 23333446777777777666543 2234555556666666666 666666666655431 0122 13455556
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 278 HGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
..|...|++++|...|++.....|+
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-14 Score=130.56 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++...+..+...|++++|+..|+++.+.+ |.+..++..++..|...|++++|++.++++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677888888899999998888887754 3445677778888888888888888888888
Q ss_pred hCCCccC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 158 VHNLMPH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 158 ~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
+....|+ ..+|..+...+...|++++|+..|++..+..+. +..++..+...+...|++++|...+++..... +.+.
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~ 142 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP 142 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH
Confidence 7432222 334778888888888888888888888876554 56777888888888888888888888877663 3455
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcC---CCCh------
Q 048533 236 FTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR---MREARRLFRDIKGA---TPNH------ 303 (591)
Q Consensus 236 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~------ 303 (591)
.+|..+...+...+++++|.+.|++..+... .+...+..+...+...|+ +++|...+++.... .|+.
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 5666666344445588888888888777532 235666667777777776 66677777666531 1331
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
.+|..+...|...|++++|.+.+++..+.
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35666667777777777777777777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.2e-12 Score=128.64 Aligned_cols=440 Identities=10% Similarity=0.027 Sum_probs=259.2
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHH
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSW 135 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (591)
.+.+-+..|+..+..+|. +..+|..++..+.+.+.++.+..+|+++.... |.....+..
T Consensus 47 ~~~d~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f------------------P~~~~lW~~ 105 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF------------------PLMANIWCM 105 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC------------------CCCHHHHHH
Confidence 456678888888888886 99999999999999999999999999999865 344455666
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHhhCCC-ccCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CC-CH
Q 048533 136 LVIFYANLKM---TQDGLQVFDQMRVHNL-MPHLHACTVLLNSLAKDRLT--------DMVWKVYKKMVQ-LGV-VA-NI 200 (591)
Q Consensus 136 l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~ 200 (591)
-+..-.+.++ ++.+..+|++.+...+ .|++..|...+....+.++. +.+.++|+..+. .|. .+ +.
T Consensus 106 Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~ 185 (679)
T 4e6h_A 106 RLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSI 185 (679)
T ss_dssp HHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred HHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccch
Confidence 6677777888 9999999999998752 47888999888877766554 335578887664 455 44 45
Q ss_pred HHHHHHHHHHHc---------cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048533 201 HLYNVLIHACCK---------SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD 269 (591)
Q Consensus 201 ~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 269 (591)
..|...+..... .++++.+..+|++.+.. |.. ..+|..........+. ..+.+++.+.
T Consensus 186 ~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------- 254 (679)
T 4e6h_A 186 QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------- 254 (679)
T ss_dssp HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--------
T ss_pred HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--------
Confidence 688888876542 34567888999998853 222 1223222111111011 1111111110
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------CC------------C--C------hhhHHHHHHHHHhcC-----
Q 048533 270 IVTYNSLIHGFCREGRMREARRLFRDIKG-------AT------------P--N------HVTYTTLIDGYCRAN----- 317 (591)
Q Consensus 270 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~------------~--~------~~~~~~li~~~~~~g----- 317 (591)
..+++.|...+.++.. .- | + ...|...+..--..+
T Consensus 255 -------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~ 321 (679)
T 4e6h_A 255 -------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321 (679)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred -------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence 0112222222222110 00 0 0 122333333222211
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHH
Q 048533 318 --DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDAN-RLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMK 394 (591)
Q Consensus 318 --~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 394 (591)
..+.+..+|+++... ++-....|...+..+...|+.++|. .+|+..... .+.+...|...+....+.|+++.|..
T Consensus 322 ~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~ 399 (679)
T 4e6h_A 322 DLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIET 399 (679)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 123344556666554 2335556666666666666666665 777766653 33455556666666667777777777
Q ss_pred HHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 395 VKNRMLEAG---------LMLD------------QFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGY 453 (591)
Q Consensus 395 ~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (591)
+|+.+.... ..|+ ...|...+....+.|+.+.|..+|..+++....+....|...+..-
T Consensus 400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 777665431 0121 2346666666666677777777777776641112223333222222
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChh
Q 048533 454 CNK-NNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPK 530 (591)
Q Consensus 454 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 530 (591)
.+. ++.+.|.++|+..++. .+-+...|...+......|+.+.|+.+|++.......+ ....|...+..-.+.|+.+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 232 3467777777777765 33356666666766666777777777777777653211 2356677777777777777
Q ss_pred HHHHHHHHHHHCC
Q 048533 531 ACSDILDDMYRRR 543 (591)
Q Consensus 531 ~A~~~~~~~~~~~ 543 (591)
.+.++.+++.+.-
T Consensus 559 ~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 559 SVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-12 Score=120.43 Aligned_cols=224 Identities=11% Similarity=0.015 Sum_probs=169.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHH
Q 048533 302 NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCN 377 (591)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (591)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34555666666777777777777777776632 45566666667777 777777777777777764 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 378 TLINAYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK----AKEMDIAKELLFGMLDAGFSPSYCSYSWL 449 (591)
Q Consensus 378 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (591)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888888777764 66777777777777 788888888888888754 45666777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 048533 450 VDGYCN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNGILGDSVIYTSLAY 521 (591)
Q Consensus 450 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 521 (591)
...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888888764 56777788888888 888889988888888764 3667777888
Q ss_pred HHHH----cCChhHHHHHHHHHHHCC
Q 048533 522 AYWR----AGEPKACSDILDDMYRRR 543 (591)
Q Consensus 522 ~~~~----~g~~~~A~~~~~~~~~~~ 543 (591)
+|.. .+++++|.+.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888999999999888876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-13 Score=124.93 Aligned_cols=223 Identities=15% Similarity=0.017 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh----cCChHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN----LKMTQDGLQV 152 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 152 (591)
+..++..++..+...|++++|+..|+++.+.+ +...+..++..|.. .+++++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 64 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------ENSGCFNLGVLYYQGQGVEKNLKKAASF 64 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHcCCCcCCCHHHHHHH
Confidence 56666677777777777777777777666521 22345556666666 7777777777
Q ss_pred HHHHhhCCCccCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhhHHHHHH
Q 048533 153 FDQMRVHNLMPHLHACTVLLNSLAK----DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK----SSDVDKVEKLLC 224 (591)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 224 (591)
|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 65 ~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 65 YAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 77776654 55566666666666 677777777777766653 45556666666666 666666666666
Q ss_pred HHhhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHh
Q 048533 225 EMEFKDVRADLFTYNTLIALYCK----KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR----EGRMREARRLFRDI 296 (591)
Q Consensus 225 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 296 (591)
+..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++.
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 666554 34455556666665 666666666666666542 34555556666666 66666666666665
Q ss_pred hcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 048533 297 KGATPNHVTYTTLIDGYCR----ANDLEEALRLREVMAAK 332 (591)
Q Consensus 297 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 332 (591)
....| ...+..+...|.. .+++++|.+.|++..+.
T Consensus 213 ~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 213 CELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 54322 4445555555555 55666666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-14 Score=124.33 Aligned_cols=206 Identities=10% Similarity=-0.074 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------PKNELAWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------ccchHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45666667777777777777777777766643 223345666666677777777777777776
Q ss_pred hhCCCccCHHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVAN-IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 234 (591)
.+..+. +..++..+...+... |+++.|...++.+.+.+..|+ ...+..+...+...|++++|...++++.... +.+
T Consensus 69 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 146 (225)
T 2vq2_A 69 LSIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQF 146 (225)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 665443 555666666666666 667777766666666221222 3455556666666666666666666665542 223
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
...+..+..++...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+....|+
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 45555666666666666666666666555422124445555555555566666666666655543444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=126.58 Aligned_cols=205 Identities=9% Similarity=-0.045 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...|+++...+ +.+..++..++..|...|++++|++.|+++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------PSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667788888889999999999998887754 3344567777888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
+.++. +...+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..... +.+..
T Consensus 99 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 176 (252)
T 2ho1_A 99 ASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS 176 (252)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence 77544 66777777788888888888888888877622223 34566666777777777777777777766653 33455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNH 303 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 303 (591)
++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++....|+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 66667777777777777777777766542 2345556666666666777777777777666544443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-11 Score=125.34 Aligned_cols=425 Identities=9% Similarity=0.011 Sum_probs=261.5
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCCC-CCCHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL---TDMVWKVYKKMVQLGV-VANIHL 202 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 202 (591)
|.+...+..++....+.+.++.+..+|++++..-+. ....|...+..-.+.++ ++.+.++|++.+...+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 345556666777777777777777777777776443 56667777777777777 7777777777776541 356667
Q ss_pred HHHHHHHHHccCCh--------hhHHHHHHHHhh-CCC-CcC-cccHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 048533 203 YNVLIHACCKSSDV--------DKVEKLLCEMEF-KDV-RAD-LFTYNTLIALYC---------KKGMHYEALAVQDRME 262 (591)
Q Consensus 203 ~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~---------~~g~~~~a~~~~~~~~ 262 (591)
|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 76666655544443 223355555432 343 332 345555555432 2234555666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----C-
Q 048533 263 REGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK--GV----Y- 335 (591)
Q Consensus 263 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~----~- 335 (591)
......-..+|......-...+. ..+.+++.+. ..+++.|...+.++... ++ +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------------SAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-------------------HHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred hCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-------------------hHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 42111111222211111000000 0011111111 12333444444432210 11 0
Q ss_pred ----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHH
Q 048533 336 ----------P-----G---VVTYNSILRKLCKEG-------RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTA 390 (591)
Q Consensus 336 ----------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 390 (591)
| + ...|...+..--..+ ..+.+..+|++++.. .+-+...|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 1 134555554333322 134567789888876 4558889999999999999999
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHH
Q 048533 391 SAM-KVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAG---------FSPS------------YCSYSW 448 (591)
Q Consensus 391 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~ 448 (591)
+|. .+|++..... +.+...+...+....+.|++++|..+|+.++... ..|+ ..+|..
T Consensus 361 ~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 9999998753 4567777788888889999999999999988631 0132 346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKK-EKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
.+....+.|+.+.|..+|..+.+.........|...+..-.+. ++++.|.++|+...+. .+-+...|...++.....|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7888888999999999999999861222344444433333344 4599999999999986 4556778888999888999
Q ss_pred ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHhhhcchhHHH--HHHHHHHhc
Q 048533 528 EPKACSDILDDMYRRRLMI--TLKIYRSFSASYAKDNEILD--LFWSHVVDR 575 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~--~~~~~~~~~ 575 (591)
+.+.|..+|++++.....+ ....|..+++.-.+.|+... .+.+++.+.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999975432 23478888877777776543 455666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=126.60 Aligned_cols=200 Identities=13% Similarity=-0.026 Sum_probs=173.5
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.....++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 34556677777789999999999999998876 78899999999999999999999999998764
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI 200 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (591)
+.+..++..++..|...|++++|++.++++.+.+..| +...+..+...+...|++++|...++++.+.... +.
T Consensus 102 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 175 (252)
T 2ho1_A 102 -----SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QP 175 (252)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CH
T ss_pred -----cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cH
Confidence 3345678888999999999999999999999832233 5678888999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 201 HLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 201 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888999999999999999999999998764 456777888999999999999999999999886
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=134.59 Aligned_cols=248 Identities=8% Similarity=-0.090 Sum_probs=171.9
Q ss_pred HhcCChHHHHHHHHHHhhCCC---ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 141 ANLKMTQDGLQVFDQMRVHNL---MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 141 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.++. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345888999999999988632 124667888889999999999999999999887654 6788888888999999999
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
+|...+++..... +.+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999888764 346778888888888899999999998888875 3443344444445566788888888887766
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChH
Q 048533 298 GATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP---GVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNV 374 (591)
Q Consensus 298 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (591)
...|+......++..+...++.++|...+.......... +...+..+...+...|++++|...+++..+.. |+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 533433333346667777777888888887776542110 13556666667777777777777777776652 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 048533 375 TCNTLINAYCKIGDTASAMKVK 396 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~ 396 (591)
+.....++...|++++|+..+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455556666655544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-14 Score=128.86 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=125.8
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++....
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------ 87 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELD------------------ 87 (243)
T ss_dssp -------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence 344555567788888888887776665 67777777888888888888888887777653
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVL 206 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (591)
+.+..++..++..|...|++++|++.++++.+.++. +...+..+...+...|++++|...++++.+.... +...+..+
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 165 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQF 165 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 233455666777777777777777777777776543 5666777777777777777777777777765443 55666666
Q ss_pred HHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 207 IHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 207 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
...+.+.|++++|...+++..... +.+..++..+..++...|++++|...++++.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777766543 334556666666677777777777777766654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=122.94 Aligned_cols=203 Identities=10% Similarity=-0.033 Sum_probs=173.0
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
...+...++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK----------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----------
Confidence 3445566677777789999999999999998876 78889999999999999999999999998754
Q ss_pred HhhcCCCCCccchHHHHHHHHHhc-CChHHHHHHHHHHhhCCCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANL-KMTQDGLQVFDQMRVHNLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+.+..++..++..|... |++++|+..++++.+.+..| +...+..+..++...|++++|...++++.+..+.
T Consensus 73 -------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 73 -------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp -------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 33456778889999999 99999999999999832223 3678889999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 198 ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 198 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+...+..+...+.+.|++++|...+++........+...+..+...+...|+.+.+..+++.+.+.
T Consensus 146 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 146 -FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 678889999999999999999999999887642146777888888889999999999999998765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-13 Score=122.47 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 338 VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHG 417 (591)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 417 (591)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555566666677777777777766642 2356666777777777777777777777776653 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYA 497 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 497 (591)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888887777654 345667777778888888888888888888776433 677788888888888888888
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
...++++.+.. +.+..++..+..+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888887752 3356778888888888888888888888888864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-13 Score=125.21 Aligned_cols=221 Identities=9% Similarity=-0.024 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-------cCCCc-------hHHHHHHHHHHH-cCCCCchHHHHHHHhh
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILT-------KNKHF-------KSAQNMLEKIAL-RDFLSTPSVLNALVKI 122 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~~ 122 (591)
++|+..|+.++...|. +..+|..++..+. +.|++ ++|..+|+++.. .+
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------------- 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------------- 95 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--------------
Confidence 6899999999998887 8999998888775 45886 899999999887 33
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHH-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLH-ACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (591)
|.+..++..++..+.+.|++++|.++|+++++..+. +.. +|..++..+.+.|+++.|..+|++..+.++. +..
T Consensus 96 ----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~ 169 (308)
T 2ond_A 96 ----KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHH 169 (308)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTH
T ss_pred ----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHH
Confidence 345567778888899999999999999999986543 343 7888888888899999999999999887543 455
Q ss_pred HHHHHHHHHH-ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHH
Q 048533 202 LYNVLIHACC-KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISP--DIVTYNSLI 277 (591)
Q Consensus 202 ~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~ 277 (591)
.|........ ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... .+| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5544433322 3688888888888887653 3456778888888888888888888888888763 344 456777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 278 HGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
....+.|+.+.|..+++++.+..|+
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHccc
Confidence 8888888888888888887764554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-14 Score=138.66 Aligned_cols=202 Identities=12% Similarity=-0.096 Sum_probs=123.3
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSL----QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
.++..+...|++++|+..|+.+++..|+ +. .++..++.++...|++++|+..++++......
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------- 118 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS----------- 118 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------
Confidence 4556666779999999999999887775 43 46778899999999999999999887653100
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CccCHHhHHHHHHHHHhcCC----------------
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-----LMPHLHACTVLLNSLAKDRL---------------- 180 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~---------------- 180 (591)
..+.+....++..++..|...|++++|+..++++.+.. ......++..+...+...|+
T Consensus 119 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~ 197 (411)
T 4a1s_A 119 -MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197 (411)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred -ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH
Confidence 01112234567778888889999999998888876641 11134466777777777777
Q ss_pred -hhHHHHHHHHHHHCC----C-CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCC-cC----cccHHHHHHHHHhcC
Q 048533 181 -TDMVWKVYKKMVQLG----V-VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVR-AD----LFTYNTLIALYCKKG 249 (591)
Q Consensus 181 -~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 249 (591)
++.|++.+++..+.. . .....++..+...+...|++++|...+++....... .+ ..++..+..++...|
T Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 198 ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 666666666654321 0 011224445555555566666666555554432100 00 113444444455555
Q ss_pred ChhHHHHHHHHHH
Q 048533 250 MHYEALAVQDRME 262 (591)
Q Consensus 250 ~~~~a~~~~~~~~ 262 (591)
++++|...+++..
T Consensus 278 ~~~~A~~~~~~al 290 (411)
T 4a1s_A 278 QFEDAAEHYKRTL 290 (411)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555544443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=131.31 Aligned_cols=170 Identities=9% Similarity=-0.100 Sum_probs=106.8
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS-LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..+..+...|++++|+..|+.+.+..|..+.. ..++..++..+...|++++|...++++...... ..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------~~ 77 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------------IG 77 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------HT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------cc
Confidence 34555566799999999999998877651110 356778899999999999999999887653100 01
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cC----HHhHHHHHHHHHhcCC-------------------
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PH----LHACTVLLNSLAKDRL------------------- 180 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~------------------- 180 (591)
+.+....++..++..|...|++++|+..++++.+.... ++ ..++..+...+...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 11223456777888888899999999888887654211 11 3366677777777777
Q ss_pred -hhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 181 -TDMVWKVYKKMVQL----GVV-ANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 181 -~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
++.|.+.+++..+. +.. ....++..+...+...|++++|...+++..
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666655432 100 012234444555555555555555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-13 Score=131.64 Aligned_cols=281 Identities=11% Similarity=-0.057 Sum_probs=153.5
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS-LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
...++..+...|++++|+..|+.+++..|..+.. ..++..++..+...|++++|...++++......
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------------ 79 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART------------ 79 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------------
Confidence 3445666666789999999999998877651111 356778888999999999999998887653100
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-cC----HHhHHHHHHHHHhcCC-----------------
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-PH----LHACTVLLNSLAKDRL----------------- 180 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~----------------- 180 (591)
..+.+....++..++..|...|++++|+..++++.+.... ++ ..++..+...+...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 0111223456777888888889999998888887664211 11 3366667777777777
Q ss_pred ---hhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChh
Q 048533 181 ---TDMVWKVYKKMVQL----GVVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHY 252 (591)
Q Consensus 181 ---~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 252 (591)
++.|...+++..+. +..+ ...++..+...+...|++++|...+++....... ...
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~---------------- 222 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGD---------------- 222 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCC----------------
Confidence 66666666554432 1000 1123444444555555555555555444322000 000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCC---CC----hhhHHHHHHHHHhcCCHHHHHHH
Q 048533 253 EALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGAT---PN----HVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 253 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
......++..+...+...|++++|...+++..... ++ ..++..+...|...|++++|...
T Consensus 223 -------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 223 -------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 00001234444455555555555555554443210 01 23444555555555555555555
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 326 REVMAAK----GVYP-GVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 326 ~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
+++.... +..+ ...++..+...+...|++++|...+++..+
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554432 1000 133455555566666666666666665443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=136.02 Aligned_cols=205 Identities=12% Similarity=-0.018 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|+..|+++...++..... ...++..++..|...|++++|+..++++.
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT--------------LSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445578889999999999999999998865321110 11467778889999999999999999887
Q ss_pred hC----C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC------------
Q 048533 158 VH----N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG-----VVANIHLYNVLIHACCKSSD------------ 215 (591)
Q Consensus 158 ~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~------------ 215 (591)
+. + ......++..+...+...|+++.|...++++.+.. ......++..+...+...|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 64 1 12245677888888888999999988888876531 11123456666677777777
Q ss_pred -----hhhHHHHHHHHhhC----C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHH
Q 048533 216 -----VDKVEKLLCEMEFK----D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PD----IVTYNSLIHGF 280 (591)
Q Consensus 216 -----~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~ 280 (591)
+++|.+.+++.... + .+....++..+...+...|++++|...+++..+.... ++ ..++..+...|
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666554331 0 0111224455555555555555555555554432000 01 11344444555
Q ss_pred HhcCCHHHHHHHHHHh
Q 048533 281 CREGRMREARRLFRDI 296 (591)
Q Consensus 281 ~~~g~~~~A~~~~~~~ 296 (591)
...|++++|...+++.
T Consensus 274 ~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HTTTCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHH
Confidence 5555555555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-13 Score=114.68 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..+|..++.++.+.|++++|+..|+++.+.+ |.+..++..++.+|.+.|++++|+..+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------------------PNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56677777777777777777777777777654 344556666777777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
....+. +...+..+...+...++++.+...+.+..+..+. +...+..+...+.+.|++++|++.|++..+.+ +.+..
T Consensus 66 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~ 142 (184)
T 3vtx_A 66 VVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR 142 (184)
T ss_dssp HHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence 766554 5666666667777777777777777777665543 56666666777777777777777777766653 33556
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
+|..+..++.+.|++++|++.|++..+.
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 6666777777777777777777766654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=132.36 Aligned_cols=298 Identities=12% Similarity=-0.034 Sum_probs=161.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC------CC-Ch
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD----IVTYNSLIHGFCREGRMREARRLFRDIKGA------TP-NH 303 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~ 303 (591)
...+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++.... .| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334455556666666666666666666654221 2 234555566666666666666666554321 11 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 048533 304 VTYTTLIDGYCRANDLEEALRLREVMAAKGVY-PGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINA 382 (591)
Q Consensus 304 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 382 (591)
.++..+...+...|++++|...+++..+.... ++. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 33444455555555555555555555443100 000 0012244445555
Q ss_pred HHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 383 YCKIGD--------------------TASAMKVKNRMLEA----GLML-DQFTYKALIHGFCKAKEMDIAKELLFGMLDA 437 (591)
Q Consensus 383 ~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 437 (591)
+...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555554321 1001 1234556666667777777777777666532
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 438 GF-SPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC-VD----VSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 438 ~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.. .++ ..++..+...|...|++++|...++++.+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 111 235666677777777777777777776643110 01 456677777777888888888877776642
Q ss_pred ----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHhhhcchhH
Q 048533 508 ----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR----RLMI-TLKIYRSFSASYAKDNEI 564 (591)
Q Consensus 508 ----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~ 564 (591)
+-.+. ..++..+..+|...|++++|...+++..+. +..+ ...++..+...|...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11111 356677777888888888888888777653 1111 123455566666555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-13 Score=113.82 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=138.2
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
+++.+|..++..|.+.|++++|++.|+++++.++. +..++..+..++.+.|+++.|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 35567888899999999999999999999888766 7888888889999999999999999888877655 667777777
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR 287 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 287 (591)
..+...++++.|...+.+..... +.+..++..+..++...|++++|++.|++..+... .+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 88888888888888888877653 44567788888888888888888888888877632 35677888888888888888
Q ss_pred HHHHHHHHhhcCCCCh
Q 048533 288 EARRLFRDIKGATPNH 303 (591)
Q Consensus 288 ~A~~~~~~~~~~~~~~ 303 (591)
+|.+.|++..+..|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 8888888877666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-13 Score=133.29 Aligned_cols=194 Identities=11% Similarity=-0.084 Sum_probs=108.5
Q ss_pred ccchHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMT-QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
+..++..++..|...|++ ++|++.|+++++.++. +..+|..+..++...|++++|.+.|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 334455555555555555 5555555555555433 45555555555555555555555555555543 3345555555
Q ss_pred HHHHcc---------CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCC--C
Q 048533 208 HACCKS---------SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK--------GMHYEALAVQDRMEREGIS--P 268 (591)
Q Consensus 208 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~--p 268 (591)
..+... |++++|...+++..... +.+...|..+..++... |++++|+..|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 56666666666655543 23455555555555555 6666666666666554210 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 048533 269 DIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLR 326 (591)
Q Consensus 269 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 326 (591)
+...|..+..+|...|++++|...|++.....|+ ...+..+..++...|++++|.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666666666666554443 445555566666666666666544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-13 Score=128.84 Aligned_cols=281 Identities=14% Similarity=0.008 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..+...+..+...|++++|+..|+++.+..+..... ...++..++..|...|++++|++.++++.+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567888899999999999999988764322110 124567788889999999999999888765
Q ss_pred C----CCc-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCC-------------
Q 048533 159 H----NLM-PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN----IHLYNVLIHACCKSSD------------- 215 (591)
Q Consensus 159 ~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~------------- 215 (591)
. +.. ....++..+...+...|+++.|...+++..+.... ++ ..++..+...+...|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 3 111 12456777778888888888888888776653211 11 2355666666677777
Q ss_pred -------hhhHHHHHHHHhhC----C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 048533 216 -------VDKVEKLLCEMEFK----D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGI-SPD----IVTYNSLIH 278 (591)
Q Consensus 216 -------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~ 278 (591)
+++|...+++.... + .+....++..+...+...|++++|...+++..+... .++ ..++..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 66666666554321 0 011122344455555555555555555554432100 000 123444444
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 048533 279 GFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYP-GVVTYNSILRKLCKEGRIRDA 357 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 357 (591)
.+...|++++|...+++.....+ ..+..+ ...++..+...+...|++++|
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~-----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLAR-----------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH-----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH-----------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 44444555555444444332100 000000 023344444555555555555
Q ss_pred HHHHHHHHhCC----C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048533 358 NRLLNEMNEKK----I-APDNVTCNTLINAYCKIGDTASAMKVKNRMLEA 402 (591)
Q Consensus 358 ~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 402 (591)
...+++..+.. . .....++..+...+...|++++|...+++..+.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555443320 0 001234555566666666666666666665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-12 Score=124.93 Aligned_cols=312 Identities=7% Similarity=-0.004 Sum_probs=180.7
Q ss_pred CChHHHHHHHHhhhc--CCCChhHHHHHHHHHhhhCCCCCCCH--HHHHHHHH--HHHcCCCchHHH-----------HH
Q 048533 38 LTSTAIHKVLLNLYN--CCHIPSLSCAFFKWAESAVPNYKHSL--QSHWTMIH--ILTKNKHFKSAQ-----------NM 100 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~--~~~~~~~A~~~f~~~~~~~p~~~~~~--~~~~~l~~--~~~~~g~~~~A~-----------~~ 100 (591)
.++..+...|..-+. +.++.++|..+++.+.+..+....+. ..|+.++. ...-.+.++.+. +.
T Consensus 7 ~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 7 ISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 345555555543332 45899999999999987665543333 33344332 222223344444 55
Q ss_pred HHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC----CCcc-CHHhHHHHHHHH
Q 048533 101 LEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH----NLMP-HLHACTVLLNSL 175 (591)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~ 175 (591)
++.+..... + ....+. ...+...+..+...|++++|+..|+++.+. +..+ ...++..+...+
T Consensus 87 ~~~i~~~~~-~----~~~~l~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 153 (383)
T 3ulq_A 87 LLEIDKKQA-R----LTGLLE--------YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153 (383)
T ss_dssp HHHHHHHTH-H----HHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-C----chhHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 555543210 0 011111 012334677888999999999999998774 2111 345788888888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCC-----CcCcccHHHHHHH
Q 048533 176 AKDRLTDMVWKVYKKMVQLGVVA------NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDV-----RADLFTYNTLIAL 244 (591)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~ 244 (591)
...|+++.|...+++..+..... ...+++.+...|...|++++|...+++...... +....++..+..+
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 233 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC 233 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 89999999998888877532111 134667777788888888888888777654310 0012356677777
Q ss_pred HHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCC-hhhHHHHHHHH
Q 048533 245 YCKKGMHYEALAVQDRMERE----GI-SPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-----TPN-HVTYTTLIDGY 313 (591)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~li~~~ 313 (591)
+...|++++|...+++..+. +. +....++..+...+...|++++|...+++.... .|. ...+..+...+
T Consensus 234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776651 22 223456677777777777777777777766431 111 12234455555
Q ss_pred HhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 314 CRAND---LEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 314 ~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
...|+ +++|+.+++.. +..|+ ...+..+...|...|++++|...+++..
T Consensus 314 ~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666 44444444443 11111 2234445555555566666665555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-12 Score=122.84 Aligned_cols=230 Identities=6% Similarity=-0.089 Sum_probs=139.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C----CCChHHHHH
Q 048533 310 IDGYCRANDLEEALRLREVMAAK----GVYP-GVVTYNSILRKLCKEGRIRDANRLLNEMNEKK--I----APDNVTCNT 378 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~ 378 (591)
...+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+.. . +....++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555442 1011 12345555555556666666666655544320 0 001235566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLM-LD----QFTYKALIHGFCKAKEMDIAKELLFGMLDA----GF-SPSYCSYSW 448 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 448 (591)
+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++.++. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 666777777777777777666543110 11 235667777788888888888888877751 22 333566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcC-HHHHHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSRG----LCVDVSVYRALIRRFCKKEK---VDYAQRLFNLMQGNGILGD-SVIYTSLA 520 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 520 (591)
+...|...|++++|...++++.+.. -+.....+..+...+...|+ +++|..++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 8888888888888888888776531 11112235667777778888 66666666655 23333 35677888
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 048533 521 YAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..|...|++++|...++++.+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8999999999999999888763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-11 Score=110.48 Aligned_cols=220 Identities=9% Similarity=0.004 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q 048533 320 EEALRLREVMAAKGVYPGVVTYNSILRKLC-------KEGRI-------RDANRLLNEMNEKKIAPDNVTCNTLINAYCK 385 (591)
Q Consensus 320 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 385 (591)
++|..+|+++.... +.++..|..+...+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555432 224444544444443 23554 6667777666662112244566666666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQF-TYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYC-NKNNEEALL 463 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 463 (591)
.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776664221 232 56666666666777777777777776643 223333333322211 257777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG-ILG--DSVIYTSLAYAYWRAGEPKACSDILDDMY 540 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (591)
.+|+.+++..+. +...|..++..+...|++++|+.+|++..... ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777765333 56677777777777777777777777777642 344 24567777777777777777777777777
Q ss_pred HCC
Q 048533 541 RRR 543 (591)
Q Consensus 541 ~~~ 543 (591)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-12 Score=133.49 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=145.7
Q ss_pred CCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH
Q 048533 36 SSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV 115 (591)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 115 (591)
+.|+.......|+.++...|++++|+..|+++++..|+ ...++..++.+|.+.|++++|+..|+++.+.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------- 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------- 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 34555566677788888889999999999999998887 78899999999999999999999999988865
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 116 LNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
|.+..++..++.+|.+.|++++|++.|+++++.++. +..+|+.+..++.+.|++++|++.|++..+..
T Consensus 74 -----------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 74 -----------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677888999999999999999999999988765 78899999999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 196 VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
+. +...+..+..++...|++++|.+.+++..+
T Consensus 142 P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 PD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp SC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 65 678888899999999999999888887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=124.65 Aligned_cols=179 Identities=12% Similarity=0.057 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
+....++..++..+...|++++|..+++++..... ... ....+....++..++..|...|++++|+..++
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE--------KTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLN 93 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34677888999999999999999999999876310 000 00112344577888999999999999999999
Q ss_pred HHhhC------C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChhhHH
Q 048533 155 QMRVH------N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL------GV-VANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 155 ~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
++.+. + ......++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98764 1 1224567888888999999999999999888764 11 123455777778888888888888
Q ss_pred HHHHHHhhC------C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 221 KLLCEMEFK------D-VRADLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 221 ~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
+++++.... + .+....++..+..++...|++++|...++++.+
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888887653 1 122344667777778888888888888877765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-12 Score=125.83 Aligned_cols=210 Identities=11% Similarity=-0.044 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHH
Q 048533 146 TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLT-DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLC 224 (591)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 224 (591)
+++++..++....... .+...+..+..++...|++ ++|++.|++..+..+. +...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566666666655443 2667777777777777777 7777777777776544 56677777777777777777777777
Q ss_pred HHhhCCCCcCcccHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 048533 225 EMEFKDVRADLFTYNTLIALYCKK---------GMHYEALAVQDRMEREGISPDIVTYNSLIHGFCRE--------GRMR 287 (591)
Q Consensus 225 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 287 (591)
+..... |+..++..+..++... |++++|++.|++..+... .+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777653 4556677777777777 777777777777766532 2456666677777666 6677
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 288 EARRLFRDIKGATP----NHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLL 361 (591)
Q Consensus 288 ~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (591)
+|...|++.....| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777665444 45666666667777777777777776666543 224445566666666666666665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-12 Score=130.74 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+++.++.++.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|++.|+++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------PEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68899999999999999999999999999865 455678889999999999999999999999
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
++.++. +..+|..+..++.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|++.|++..+.. +-+..
T Consensus 70 l~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~ 146 (723)
T 4gyw_A 70 IRISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPD 146 (723)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 998766 7889999999999999999999999999998765 78899999999999999999999999998874 44678
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
.+..+..++...|++++|.+.+++..+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999999988765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-11 Score=115.63 Aligned_cols=312 Identities=10% Similarity=0.019 Sum_probs=184.4
Q ss_pred CCChHHHHHHHHhhh--cCCCChhHHHHHHHHHhhhCCCCCCCH--HHHHHHHHH--HHcCCCchHHH---------HHH
Q 048533 37 SLTSTAIHKVLLNLY--NCCHIPSLSCAFFKWAESAVPNYKHSL--QSHWTMIHI--LTKNKHFKSAQ---------NML 101 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~--~~~~~~~~A~~~f~~~~~~~p~~~~~~--~~~~~l~~~--~~~~g~~~~A~---------~~~ 101 (591)
..++..+...|-.-+ ...++.++|..+++.+....+....+. ..|..+... ..-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345677777777666 566899999999998876554433333 333443321 11123333333 555
Q ss_pred HHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc-c----CHHhHHHHHHHHH
Q 048533 102 EKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM-P----HLHACTVLLNSLA 176 (591)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~~~ 176 (591)
+.+...... ...... ...+...+..+...|++++|+..|+++.+.... + ...++..+..++.
T Consensus 86 ~~i~~~~~~-----~~~~l~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~ 152 (378)
T 3q15_A 86 ETIETPQKK-----LTGLLK--------YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY 152 (378)
T ss_dssp HHHHGGGHH-----HHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCC-----CccHHH--------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 554332100 011111 113455677788999999999999998765211 1 2457788888899
Q ss_pred hcCChhHHHHHHHHHHHCCC-----CC-CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCC-cCcccHHHHHHHH
Q 048533 177 KDRLTDMVWKVYKKMVQLGV-----VA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVR-ADLFTYNTLIALY 245 (591)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 245 (591)
..|+++.|...+++..+... .+ ...+++.+...|...|++++|.+.+++.... +.+ ....++..+..++
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999988888765311 11 2346677778888888888888888776542 111 1134566677777
Q ss_pred HhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcC-----CCC-hhhHHHHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMER-----EGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGA-----TPN-HVTYTTLIDGYC 314 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~li~~~~ 314 (591)
...|++++|...+++..+ .... ...++..+...+.+.|++++|...+++.... .+. ...+..+...+.
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777888887777777665 3222 2556667777777777777777777776541 111 223444445555
Q ss_pred hcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 315 RAND---LEEALRLREVMAAKGVYPG-VVTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 315 ~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
..++ +++|+..++. .+..|+ ...+..+...|...|++++|...|+...
T Consensus 312 ~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 312 ETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp SSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5566 5555555544 211111 2234445555556666666666665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.1e-11 Score=113.91 Aligned_cols=241 Identities=9% Similarity=-0.015 Sum_probs=141.1
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS--LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
....+.++...|+++.|+..++.+....|...+. ..++..++..+...|++++|...+++............
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 90 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------ 90 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH------
Confidence 3444555566799999999999998876642111 12566788899999999999999999876422111110
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC----Cc--c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN----LM--P-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
....++..+...+...|++++|+..+++..+.. .. | ...++..+...+...|++++|...+++..+.
T Consensus 91 ------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 91 ------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 011345667888999999999999999877632 11 2 2345566777777888888888888877654
Q ss_pred CCCC----CHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc-ccHH-----HHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 195 GVVA----NIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL-FTYN-----TLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 195 ~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
.... ...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++....
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 3221 1234555566666667777776666665432111111 1111 1122244555555555555554432
Q ss_pred CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 265 GISP---DIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 265 ~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...+ ....+..+...+...|++++|...++..
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2111 0122334444455555555555555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=114.45 Aligned_cols=239 Identities=15% Similarity=0.073 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-
Q 048533 303 HVTYTTLIDGYCRANDLEEALRLREVMAAK-------GVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK------K- 368 (591)
Q Consensus 303 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 368 (591)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567888889999999999999999998873 22334566788888899999999999999988764 1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 048533 369 IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEA------GLML-DQFTYKALIHGFCKAKEMDIAKELLFGMLDA---- 437 (591)
Q Consensus 369 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 437 (591)
.+.....+..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1223467888889999999999999999988764 2112 3456778888899999999999999998763
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 048533 438 --GFSP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSRG-------LCVD-------VSVYRALIRRFCKKEKVDYAQRL 500 (591)
Q Consensus 438 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 500 (591)
+..| ...++..+...|...|++++|...++++.+.. ..+. ...+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 24567788889999999999999999988631 1111 12222333334455666666667
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 501 FNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++..... -+.+..++..+..+|.+.|++++|.++++++.+.
T Consensus 267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7766653 2334578889999999999999999999988763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-10 Score=108.81 Aligned_cols=274 Identities=12% Similarity=-0.010 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
.+....+..+...|++++|...+++.....+..+... ...++..+...|...|++++|...+++..+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS-------------RIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHH-------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhH-------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445667788899999999999999887543222110 112456677889999999999999998876
Q ss_pred CCCc-cC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC--C-CHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 159 HNLM-PH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG----VV--A-NIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 159 ~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
.... ++ ..++..+...+...|+++.|...+++..+.. .. | ....+..+...+...|++++|...+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4211 11 2345677788888999999999988876532 11 2 2345566777888889999999888887
Q ss_pred hhCCCC----cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHh
Q 048533 227 EFKDVR----ADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYN----SLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 227 ~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...... ....++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+...
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 653211 1123566777778888888888888887764311111 11111 2234466788888888888877
Q ss_pred hcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 297 KGATPN-----HVTYTTLIDGYCRANDLEEALRLREVMAAK----GVYPGV-VTYNSILRKLCKEGRIRDANRLLNEMN 365 (591)
Q Consensus 297 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (591)
....+. ...+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++..
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 653332 113445566677777777777776665432 111111 133334444555555555555555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-10 Score=109.35 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 048533 376 CNTLINAYCKIGDTASAMKVKNRMLE-----AGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA----GFSPSYCSY 446 (591)
Q Consensus 376 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 446 (591)
+..+..+|...|++++|...+++... .. +....++..+...+.+.|++++|...+++..+. +.+.....+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444455555555555544443 21 112444555555555555555555555555532 111112233
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 447 SWLVDGYCNKNN---EEALLKLLDEFVSRGLCV-DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 447 ~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
..+...+...++ ..+|+..+++ .+..| ....+..+...|...|++++|...|++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444445555 4444444443 11111 223445566666666666666666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-11 Score=102.78 Aligned_cols=160 Identities=9% Similarity=-0.031 Sum_probs=96.1
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
.++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|...++++....
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------- 72 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------- 72 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence 3344444456677777777666655444 56666666666666777777776666666543
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.+..++..++..|...|++++|++.++++.+..+. +...+..+...+...|++++|...++.+.+.... +...+..
T Consensus 73 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 149 (186)
T 3as5_A 73 -PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRA 149 (186)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHH
Confidence 223345555666666666666666666666665433 5555666666666666666666666666655432 4555555
Q ss_pred HHHHHHccCChhhHHHHHHHHhh
Q 048533 206 LIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 206 ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
+...+...|++++|...+++...
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=105.60 Aligned_cols=165 Identities=13% Similarity=0.019 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..+...|++++|+..++++.+..+. +..++..+...+...|+++.|...++.+.+..+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 345666778888899999999999888877654 6778888888888889999999888888876543 66777778888
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877653 3456677777778888888888888888877653 23566777777777788888888
Q ss_pred HHHHHHhhc
Q 048533 290 RRLFRDIKG 298 (591)
Q Consensus 290 ~~~~~~~~~ 298 (591)
...++.+..
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=112.11 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=120.4
Q ss_pred CCChhHHHHHHHHHhhhC-----CCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 54 CHIPSLSCAFFKWAESAV-----PNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~-----p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
.|++++|+..|+.+++.. ++.+....++..++.++...|++++|+..++++.... ... ...+.+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~--~~~~~~~ 83 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR--------EKT--LGKDHPA 83 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHH--TCTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH--------HHH--cCCcchH
Confidence 377788888888777631 2223356778899999999999999999999987631 000 0012233
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVH------N-LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL------G 195 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 195 (591)
...++..++..|...|++++|++.|+++.+. . ......++..+...+...|++++|...++++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567888999999999999999999998765 1 1224667888888899999999999999888765 1
Q ss_pred CCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 196 VVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 196 ~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
..| ...++..+...+...|++++|...+++...
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 345677778888888888888888887765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=102.19 Aligned_cols=146 Identities=10% Similarity=0.042 Sum_probs=117.6
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
|+.++...|++++|+..|+.+....|. ....++.++.+|.+.|++++|+..|+++.+.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------------------ 61 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------------------ 61 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 466677778999999999998775554 66778889999999999999999999998865
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKV-YKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ 205 (591)
|.++.++..++.+|.+.|++++|+..|+++++.++. +..++..+...+.+.|++++|.+. +++..+..+. +..+|..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l 139 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKL 139 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 456678888999999999999999999999998765 788899999999999998776655 5888887654 6777877
Q ss_pred HHHHHHccCC
Q 048533 206 LIHACCKSSD 215 (591)
Q Consensus 206 ll~~~~~~g~ 215 (591)
....+...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 7777776664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-10 Score=99.02 Aligned_cols=196 Identities=11% Similarity=-0.066 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 336 PGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI 415 (591)
Q Consensus 336 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 415 (591)
.|+..+......+...|++++|...|+..++...+++...+..+..++...|++++|...+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 356777778888888888999998888888765436777777788888888888888888888887642 2567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDAGFSPSY-------CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVD---VSVYRALI 485 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 485 (591)
..+...|++++|...+++.++.. +.+. ..|..+...+...|++++|+..++++++.. |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 88888888888888888888754 2334 456777777888888888888888888753 33 45667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 486 RRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.+|...| ...++++...+ ..+...+.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7765443 34455555432 22334443332 334566889999999998864
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-09 Score=99.28 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=178.8
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK--HFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
+...+..........++|+..++.++..+|+ ...+++.-..++...| .+++++..++.++..+|..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~--------- 102 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN--------- 102 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---------
Confidence 4555555556666778999999999999998 7888888899999999 9999999999999877543
Q ss_pred hhcCCCCCccchHHHHHHHH----Hhc---CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh--HHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIFY----ANL---KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD--MVWKVYKKM 191 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~ 191 (591)
..+++....++ ... +++++++++++++.+.+++ +..+|+.-.-.+.+.|.++ .+++.++++
T Consensus 103 ---------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 103 ---------YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 33444433333 444 7899999999999999887 9999999988888899888 999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCC------hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH-HHHHHHHHHHC
Q 048533 192 VQLGVVANIHLYNVLIHACCKSSD------VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE-ALAVQDRMERE 264 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 264 (591)
.+.++. |...|+.....+.+.|. ++++++.+++++..+ +-|..+|+.+...+.+.|+..+ +..+..++.+.
T Consensus 173 i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 998876 88888877777777776 778888888877764 4577778887777777776444 44555555443
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCC
Q 048533 265 G--ISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATP 301 (591)
Q Consensus 265 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 301 (591)
+ -..++..+..+...|.+.|+.++|.++++.+.. ..|
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 2 123566777777777777777777777777764 344
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-10 Score=102.26 Aligned_cols=195 Identities=9% Similarity=-0.081 Sum_probs=153.4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
.++..+...+..|...|++++|+..|+++++.++.++...+..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3457788889999999999999999999999877568888888999999999999999999999998665 677889999
Q ss_pred HHHHccCChhhHHHHHHHHhhCCCCcCc-------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 048533 208 HACCKSSDVDKVEKLLCEMEFKDVRADL-------FTYNTLIALYCKKGMHYEALAVQDRMEREGISPD---IVTYNSLI 277 (591)
Q Consensus 208 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 277 (591)
.++...|++++|...+++..... +.+. .+|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998764 2344 45788888899999999999999999876 454 45777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048533 278 HGFCREGRMREARRLFRDIKGAT-PNHVTYTTLIDGYCRANDLEEALRLREVMAAKG 333 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 333 (591)
..|...| ...++.+.... .+...+.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7776554 34444544422 2333333332 334566899999999998863
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=106.57 Aligned_cols=192 Identities=7% Similarity=-0.080 Sum_probs=121.8
Q ss_pred ChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHH
Q 048533 39 TSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNA 118 (591)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (591)
++....-.++..+...|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++....+..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 3333344445556667999999999999999888744448889999999999999999999999999875432
Q ss_pred HHhhcCCCCCccchHHHHHHHHHh--------cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 119 LVKIHDDPDGNSHVLSWLVIFYAN--------LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
+....++..++.+|.. .|++++|+..|+++++..+. +......+... ..
T Consensus 86 --------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~ 142 (261)
T 3qky_A 86 --------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RE 142 (261)
T ss_dssp --------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HH
T ss_pred --------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HH
Confidence 2334567788889998 99999999999999987654 32222111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc--CcccHHHHHHHHHhc----------CChhHHHHHH
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA--DLFTYNTLIALYCKK----------GMHYEALAVQ 258 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~ 258 (591)
+... ....+..+...+.+.|++++|...|+++....... ....+..+..++... |++++|...|
T Consensus 143 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~ 218 (261)
T 3qky_A 143 LRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY 218 (261)
T ss_dssp HHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence 0000 01113334555555666666666666555432110 122444455555544 5556666666
Q ss_pred HHHHHC
Q 048533 259 DRMERE 264 (591)
Q Consensus 259 ~~~~~~ 264 (591)
+++.+.
T Consensus 219 ~~~~~~ 224 (261)
T 3qky_A 219 ERLLQI 224 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-10 Score=104.60 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=143.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN--K-HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
.+|.+++..+.+..+. +. .++. +.+. + ++++|...|+++.
T Consensus 2 ~~a~~~~~~a~k~~~~---~~-~~~~----~~~~~~~~~~~~A~~~~~~a~----------------------------- 44 (292)
T 1qqe_A 2 SDPVELLKRAEKKGVP---SS-GFMK----LFSGSDSYKFEEAADLCVQAA----------------------------- 44 (292)
T ss_dssp CCHHHHHHHHHHHSSC---CC-THHH----HHSCCSHHHHHHHHHHHHHHH-----------------------------
T ss_pred CcHHHHHHHHHHHhCc---CC-Ccch----hcCCCCCccHHHHHHHHHHHH-----------------------------
Confidence 3577888888877653 21 1222 2233 2 5888888877763
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC----CCcc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHH
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVH----NLMP-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-N----IHLYN 204 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 204 (591)
..|...|++++|+..|++..+. +..+ ...+|+.+..+|...|++++|+..|++..+..... + ..+++
T Consensus 45 ---~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 45 ---TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp ---HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2477889999999999988764 2211 24678888899999999999999888877542111 1 24566
Q ss_pred HHHHHHHcc-CChhhHHHHHHHHhhCCCCc-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HH
Q 048533 205 VLIHACCKS-SDVDKVEKLLCEMEFKDVRA-D----LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDI------VT 272 (591)
Q Consensus 205 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~ 272 (591)
.+...|... |++++|...|++........ + ..++..+...+...|++++|+..|++..+....... ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 677777775 78887777777765431100 0 235666777777777777777777777665322211 14
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 048533 273 YNSLIHGFCREGRMREARRLFRDIKGATPNHV------TYTTLIDGYC--RANDLEEALRLREVMA 330 (591)
Q Consensus 273 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~li~~~~--~~g~~~~a~~~~~~~~ 330 (591)
+..+..++...|++++|...|++.....|+.. .+..++..+. ..+++++|+..|+.+.
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55666667777777777777777766555422 1223333332 3345666666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=106.79 Aligned_cols=227 Identities=16% Similarity=0.070 Sum_probs=150.7
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCChHHHHHHH
Q 048533 315 RANDLEEALRLREVMAA-------KGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK------KI-APDNVTCNTLI 380 (591)
Q Consensus 315 ~~g~~~~a~~~~~~~~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 380 (591)
..|++++|...+++..+ ...+....++..+...+...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655544 222234567788888899999999999999988754 11 22346788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 048533 381 NAYCKIGDTASAMKVKNRMLEA------GL-MLDQFTYKALIHGFCKAKEMDIAKELLFGMLDA------GFSP-SYCSY 446 (591)
Q Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 446 (591)
..+...|++++|...++++... .. +.....+..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999988764 11 223567788888899999999999999988764 1122 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCcC
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSR-------GLCV-DVSVYRALIRRFCKKEKVD------YAQRLFNLMQGNGILGD 512 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~p~ 512 (591)
..+...|...|++++|...++++.+. ...+ ....+..+...+...+... .+...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 78888899999999999999988763 1111 2233434443333333322 22222222111 11223
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 513 SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..++..+..+|...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999988763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=102.02 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=151.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP- 163 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 163 (591)
+.++...|++++|...|+++....... .+++....++..++.+|.+.|++++|+..|++.++.....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 557888999999999999987632110 0111224578889999999999999999999987653211
Q ss_pred ----CHHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc
Q 048533 164 ----HLHACTVLLNSLAKD-RLTDMVWKVYKKMVQLGVVA-N----IHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA 233 (591)
Q Consensus 164 ----~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 233 (591)
-..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|...|++........
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 145788999999996 99999999999988753221 1 3568888999999999999999999998864322
Q ss_pred Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHhhcC
Q 048533 234 DLF------TYNTLIALYCKKGMHYEALAVQDRMEREGISPDI------VTYNSLIHGFC--REGRMREARRLFRDIKGA 299 (591)
Q Consensus 234 ~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 299 (591)
... .|..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+++++|+..|+.+...
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 221 4677888899999999999999998764 2321 13444566664 456799999999888765
Q ss_pred CCCh
Q 048533 300 TPNH 303 (591)
Q Consensus 300 ~~~~ 303 (591)
.|+.
T Consensus 270 ~~~~ 273 (292)
T 1qqe_A 270 DKWK 273 (292)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 5543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-10 Score=98.42 Aligned_cols=181 Identities=8% Similarity=-0.001 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+...+..+...|++++|+..|+++...+|......+.. .........+.+...++.+|.+.|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT--NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH--HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh--hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677788889999999999999999988653221111100 000000001111122566666666666666666666
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hhhHHHHHHHHhhCCCCcC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD--VDKVEKLLCEMEFKDVRAD 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 234 (591)
++.++. +..++..+..++...|++++|+..|+++.+..+. +..++..+...+...|+ ...+...++..... .|.
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKM 156 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--Cch
Confidence 665544 5556666666666666666666666666665443 45555555555443332 22233333333211 111
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
...+.....++...|++++|...|++..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12222333334444555555555555444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=120.89 Aligned_cols=185 Identities=10% Similarity=-0.040 Sum_probs=122.7
Q ss_pred HcCCCchHHHHHHHHHH--------HcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 89 TKNKHFKSAQNMLEKIA--------LRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
...|++++|++.++++. +.+ +.+..++..++..|.+.|++++|+..|+++.+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF------------------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc------------------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Confidence 66777777777777776 322 3445566667777777777777777777777765
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
+. +..+|..+..++...|++++|++.|++..+..+. +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..
T Consensus 464 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~ 539 (681)
T 2pzi_A 464 GW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFG 539 (681)
T ss_dssp CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHH
T ss_pred cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHH
Confidence 54 6667777777777777777777777777776554 56667777777777777777 77777776654 335567777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHhh
Q 048533 241 LIALYCKKGMHYEALAVQDRMEREGISPD-IVTYNSLIHGFCREGR--------MREARRLFRDIK 297 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 297 (591)
+..++.+.|++++|++.|++..+. .|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 777777777777777777777654 343 4456666666544333 445555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-07 Score=91.76 Aligned_cols=353 Identities=9% Similarity=0.042 Sum_probs=215.3
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHc----cCCh
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL-TDMVWKVYKKMVQL-GVV-ANIHLYNVLIHACCK----SSDV 216 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~----~g~~ 216 (591)
|+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+..+.. |.. .+...|...+..+.. .|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999985 4699999999988887764 45677888887753 433 366788888876542 4678
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCK---KGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLF 293 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 293 (591)
+.+.++|++.+.. ++. .+..+-..|.. ..+...+..++.+ . .+.+..|..++
T Consensus 106 ~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~-------------------~--~~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGD-------------------T--LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHH-------------------H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHH-------------------H--hHHHHHHHHHH
Confidence 8899999999863 221 11222111111 1111112222111 1 11233344444
Q ss_pred HHhhcC--CCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 294 RDIKGA--TPNHVTYTTLIDGYCRAN-------DLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEM 364 (591)
Q Consensus 294 ~~~~~~--~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (591)
+.+... ..+...|...+..-...+ ..+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 433321 112334544444322211 0345666777777642 345667777777777888888888888888
Q ss_pred HhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 365 NEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG---------LML---DQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 365 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
... +.+...|.. |....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|.
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~ 310 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI 310 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 876 334333332 2222111221 22222110 001 12446666666667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 048533 433 GMLDAGFSPSYCSYSWLVDGYCN-KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILG 511 (591)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 511 (591)
.+ ... ..+...|......-.. .++.+.|..+|+...+.-+ -++..+...++.....|+.+.|+.+|+++. .
T Consensus 311 ~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k 382 (493)
T 2uy1_A 311 EL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----K 382 (493)
T ss_dssp HH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----C
T ss_pred Hh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----H
Confidence 99 321 2344555433322222 3369999999999988632 246667778888888999999999999973 2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 512 DSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
....|...+..-...|+.+.+..+++++..
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578888888888889999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-09 Score=94.44 Aligned_cols=242 Identities=9% Similarity=-0.020 Sum_probs=153.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
..-.|++..++.-.. +............+.+++...|+++.. ....|....+..+... ...+ |
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----C
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----H
Confidence 444688888887433 332232344455566888888887642 1223343344444333 3322 6
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGIS-PDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
...+++....+ +++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++++..
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777654 445555667778888888888888888887665431 2456777788888888888888888888877
Q ss_pred CCC-----ChhhHHHHHHH--HHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 048533 299 ATP-----NHVTYTTLIDG--YCR--ANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKK- 368 (591)
Q Consensus 299 ~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (591)
..| +..+...++.+ ... .+++++|..+|+++... .|+..+...++.++.+.|++++|...++.+.+.-
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 666 24444444444 222 33788888888887665 3453333444457778888888888887655420
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 369 --------IAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 369 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
-+.+..++..+|......|+ +|.+++.++.+..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 12355666566666666676 6777777777763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-10 Score=97.16 Aligned_cols=167 Identities=11% Similarity=0.003 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV----------------LLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
+...+..+...|++++|+..|+++.+.++. +...+.. +..++.+.|++++|+..|++..+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 444556688999999999999999987654 4555555 55556666666666666666665544
Q ss_pred CCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHH
Q 048533 197 VANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGM--HYEALAVQDRMEREGISPDIVTYN 274 (591)
Q Consensus 197 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~ 274 (591)
. +...+..+..++...|++++|...|++....+ |.+..+|..+..++...|. .+.+...+..... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3 45555555666666666666666666655543 2344455555555544332 2233333333321 112222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCChh
Q 048533 275 SLIHGFCREGRMREARRLFRDIKGATPNHV 304 (591)
Q Consensus 275 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 304 (591)
....++...|++++|...|++.....|+..
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 334444445555556665555555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=97.38 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=92.3
Q ss_pred hcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 51 YNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|+..++++....+ +..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~---------------- 74 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNS---------------- 74 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHH----------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChH----------------
Confidence 33447777777777777776666 677777777777777777777777777665443 111
Q ss_pred chHHHHHHH-HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 048533 131 HVLSWLVIF-YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-NIHLYNVLIH 208 (591)
Q Consensus 131 ~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~ 208 (591)
....+... +...+...+|+..|++..+.++. +...+..+..++...|++++|...|+++.+..+.+ +...+..+..
T Consensus 75 -~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 75 -YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 11111111 11222333456666666665544 56666666666666777777777776666655432 2345566666
Q ss_pred HHHccCChhhHHHHHHHHh
Q 048533 209 ACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~ 227 (591)
.+...|+.++|...|++..
T Consensus 153 ~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHH
Confidence 6666666666666666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.9e-10 Score=116.63 Aligned_cols=151 Identities=13% Similarity=-0.057 Sum_probs=130.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIA 243 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (591)
+...+..+..++...|++++|++.|+++.+.++. +...|..+..++...|++++|...|++..+.+ +.+...|..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 6778999999999999999999999999988665 78889999999999999999999999998874 446788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCC
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRAND 318 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 318 (591)
++.+.|++++ ++.|++..+.+. .+...+..+..++.+.|++++|...|++.....|+ ...+..+..++...++
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999 999999988643 36788999999999999999999999999887787 5677777777766554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=100.54 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=86.0
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC-HH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH---LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN-IH 201 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~ 201 (591)
+.++..+..++..+.+.|++++|+..|+++++..+. + ..++..+..++.+.|+++.|+..|+.+.+..+. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456678888899999999999999999999987654 3 678889999999999999999999999987542 12 34
Q ss_pred HHHHHHHHHHc--------cCChhhHHHHHHHHhhCC
Q 048533 202 LYNVLIHACCK--------SSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 202 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~ 230 (591)
.+..+..++.. .|++++|...|+++....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 56677788888 899999999999988763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=95.59 Aligned_cols=181 Identities=9% Similarity=-0.059 Sum_probs=122.7
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
..+...|++++|+..|+.+++..|..+....++..++.++.+.|++++|+..|+++.+..|.....
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~-------------- 77 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-------------- 77 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH--------------
Confidence 334455999999999999999888755556788999999999999999999999999877543221
Q ss_pred ccchHHHHHHHHH------------------hcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 048533 129 NSHVLSWLVIFYA------------------NLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 129 ~~~~~~~l~~~~~------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 190 (591)
..++..++.+|. ..|++++|+..|+++++..+. +..++...... ..+...
T Consensus 78 -~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 78 -DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp -HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHH
T ss_pred -HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHH
Confidence 113333444443 467888888888888877544 22222211110 000111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 191 MVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL----FTYNTLIALYCKKGMHYEALAVQDRMEREG 265 (591)
Q Consensus 191 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 265 (591)
+ ......+...+.+.|++++|...|+++.+.. |+. .++..+..++.+.|++++|.+.++.+...+
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1 0112345667788888888888888887653 332 457778888888888888888888887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-10 Score=94.57 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
........+..+.+.|++++|+..|+++.+.+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL------------------QSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH------------------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44556778888999999999999998887654 445667888888899999999999999988
Q ss_pred hhCCCccCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCc-C
Q 048533 157 RVHNLMPHLHACTVLLNS-LAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRA-D 234 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 234 (591)
.+..+ +...+..+... +...+....|+..+++..+..+. +...+..+...+...|++++|...|+++......+ +
T Consensus 67 ~~~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 67 PLEYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp CGGGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hhccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 77654 43333322222 12223344578888888876554 67778888888888888888888888888764322 2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 235 LFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 235 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
...+..+..++...|+.++|...|++...
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45788888888888888888888876653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-08 Score=91.28 Aligned_cols=177 Identities=8% Similarity=-0.013 Sum_probs=109.8
Q ss_pred HHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 149 GLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV-VANIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 149 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 33555556777777777888888888877766554 1245566677777778888888888887776
Q ss_pred hCCCCc-----CcccHHHHHHH--HHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 048533 228 FKDVRA-----DLFTYNTLIAL--YCKKG--MHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG 298 (591)
Q Consensus 228 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 298 (591)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 33 23444444444 22233 777777777777654 34433333344467777777777777776544
Q ss_pred C----------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 299 A----------TP-NHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 299 ~----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
. .| +..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 13 34455455555555565 667777777765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-09 Score=99.64 Aligned_cols=173 Identities=13% Similarity=0.044 Sum_probs=129.6
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCCh
Q 048533 67 AESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMT 146 (591)
Q Consensus 67 ~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (591)
+....|. +...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++
T Consensus 109 l~~~lp~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~la~~~~~~g~~ 167 (287)
T 3qou_A 109 LDXVLPR---EEELXAQQAMQLMQESNYTDALPLLXDAWQLS------------------NQNGEIGLLLAETLIALNRS 167 (287)
T ss_dssp HHHHSCC---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------------------TSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCC---chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CcchhHHHHHHHHHHHCCCH
Confidence 3333454 67778888888889999999999998888765 45566777888889999999
Q ss_pred HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 147 QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
++|+..++++...++. ...........+...++.+.|...+++..+..+. +...+..+...+...|++++|...|.++
T Consensus 168 ~~A~~~l~~~~~~~p~-~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQD-TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHTTSCGGGCS-HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhcc-hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999888776542 2222333334466777788888888888887654 6778888888888889999998888888
Q ss_pred hhCCCC-cCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 227 EFKDVR-ADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 227 ~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
.+.... .+...+..++..+...|+.++|...|++..
T Consensus 246 l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 246 LRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 776422 125678888888888888888888877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=100.34 Aligned_cols=166 Identities=10% Similarity=-0.072 Sum_probs=136.8
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
+......++..+...|++++|+..|+.+++..|+ +..++..++.++.+.|++++|...++++....+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-------- 184 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-------- 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--------
Confidence 3333444555666679999999999999999987 88999999999999999999999999988765421
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA- 198 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 198 (591)
..........+.+.++.++|+..|++..+.++. +...+..+...+...|++++|+..|.++.+..+..
T Consensus 185 ----------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 185 ----------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp ----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred ----------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 112222334577788899999999999998765 88899999999999999999999999999986542
Q ss_pred CHHHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 199 NIHLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 199 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
+...+..++..+...|+.++|...+++..
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 26788999999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=94.04 Aligned_cols=146 Identities=12% Similarity=-0.002 Sum_probs=94.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
|+.++...|++++|+..++...... +.++..+..++..|.+.|++++|++.|+++++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~------------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~- 63 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP------------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER- 63 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH------------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 4555666677777777777665432 233445666777777778888888877777777655
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH-HHHHhhCCCCcCcccHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL-LCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li 242 (591)
+..+|..+..++...|+++.|+..|+...+.++. +..++..+...+.+.|++++|.+. +++..+.. |.+..+|....
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~ 141 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 6777777777777777777777777777776554 566777777777777777665544 46655543 33455566555
Q ss_pred HHHHhcCC
Q 048533 243 ALYCKKGM 250 (591)
Q Consensus 243 ~~~~~~g~ 250 (591)
..+...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 55555553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-09 Score=93.50 Aligned_cols=193 Identities=10% Similarity=-0.002 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...++.++..+.+.|++++|+..|+++....+.+ +....++..++.+|.+.|++++|+..|+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG---------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45677888999999999999999999998865422 222357788899999999999999999999
Q ss_pred hhCCCccCH--HhHHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 157 RVHNLMPHL--HACTVLLNSLAK------------------DRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 157 ~~~~~~~~~--~~~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
.+..+.... .++..+..++.. .|++++|+..|+.+.+..+. +...+.......
T Consensus 68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~------ 140 (225)
T 2yhc_A 68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV------ 140 (225)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH------
T ss_pred HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH------
Confidence 987654221 245555555543 34555555566555554322 222221111100
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMREARRLFR 294 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 294 (591)
.+...+. .....+...+.+.|++++|+..|+++.+...... ...+..+..++.+.|++++|.+.++
T Consensus 141 ----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 141 ----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp ----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 0000000 0113567788999999999999999988632211 2568889999999999999999999
Q ss_pred HhhcCCCCh
Q 048533 295 DIKGATPNH 303 (591)
Q Consensus 295 ~~~~~~~~~ 303 (591)
.+....|+.
T Consensus 209 ~l~~~~~~~ 217 (225)
T 2yhc_A 209 IIAANSSNT 217 (225)
T ss_dssp HHHHCCSCC
T ss_pred HHHhhCCCc
Confidence 988766653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=111.95 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=123.0
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
|++++|+..|+.+.+..|+ +..++..++.++.+.|++++|+..++++.+.+ +.+..++.
T Consensus 3 g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~ 61 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALH------------------PGHPEAVA 61 (568)
T ss_dssp ------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------------------TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHH
Confidence 7889999999999887776 78899999999999999999999999998754 44566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKS- 213 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 213 (591)
.++.+|...|++++|++.|+++.+.++. +...+..+..++.+.|++++|.+.|++..+.... +...+..+...+...
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhh
Confidence 8999999999999999999999988765 7889999999999999999999999999987654 677888899999999
Q ss_pred --CChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 214 --SDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 214 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
|+.++|.+.+++..+.+ +.+...|..
T Consensus 140 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 167 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQG-VGAVEPFAF 167 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHT-CCCSCHHHH
T ss_pred ccccHHHHHHHHHHHHhcC-CcccChHHH
Confidence 99999999999988764 233444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-07 Score=87.74 Aligned_cols=218 Identities=11% Similarity=0.013 Sum_probs=163.2
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
...++|+.+++.++..+| ....+++.-..++...| +++++++.++.++..+++ +..+|+
T Consensus 47 e~s~~aL~~t~~~L~~nP------------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~ 107 (306)
T 3dra_A 47 EYSERALHITELGINELA------------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWN 107 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCc------------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHH
Confidence 344588888888888764 34445666666777777 899999999999998877 777887
Q ss_pred HHHHHH----Hhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--hHHHHHHHHhhCCCCcCcccHHH
Q 048533 170 VLLNSL----AKD---RLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD--KVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 170 ~ll~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
.-...+ ... +++++++++++.+.+..++ +..+|+.-.-++.+.|.++ ++++.++++...+ +.|..+|+.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~ 185 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 776666 555 7888999999999988766 7888888777788888888 8889999988875 347777887
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcC----CCChhhHHHH
Q 048533 241 LIALYCKKGM------HYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE-ARRLFRDIKGA----TPNHVTYTTL 309 (591)
Q Consensus 241 li~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~~~~~~~~~l 309 (591)
....+...+. ++++++.+++++...+. |...|+.+...+.+.|+... +..+..++... ..+...+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 7777777666 78888888888776543 77788877777777776433 44455555432 2356677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048533 310 IDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~ 331 (591)
+.+|.+.|+.++|.++++.+.+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHh
Confidence 7788888888888888888775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-08 Score=86.18 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 048533 356 DANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK----EMDIAKELL 431 (591)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 431 (591)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56667777777777777777777777776654 55666666666666 5 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 048533 432 FGMLDAGFSPSYCSYSWLVDGYCN----KNNEEALLKLLDEFVSRGLC-VDVSVYRALIRRFCK----KEKVDYAQRLFN 502 (591)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 502 (591)
++..+.+ +...+..+...|.. .+++++|.+++++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7777654 45566666666665 67788888888887776431 026677777777777 677888888888
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHCCCC
Q 048533 503 LMQGNGILGDSVIYTSLAYAYWRA-G-----EPKACSDILDDMYRRRLM 545 (591)
Q Consensus 503 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 545 (591)
+..+. ..+...+..|...|... | ++++|..+|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88775 23455666677777653 3 788888888888887743
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.6e-09 Score=83.78 Aligned_cols=130 Identities=17% Similarity=0.067 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++..|...|++++|+.+++++.+.++. +...+..+...+...|+++.|...++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 4556677777888888888888887776543 5667777777777778888888888877766543 5566666777777
Q ss_pred ccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 212 KSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
..|++++|.+.++++.... +.+..++..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766543 234556666666777777777777777666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-07 Score=92.80 Aligned_cols=125 Identities=8% Similarity=-0.086 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 374 VTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCK-AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDG 452 (591)
Q Consensus 374 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (591)
..|...+....+.++.+.|..+|+++ .. ...+...|......-.. .++.+.|..+|+..++.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45666777777777888888888888 32 12344555433332222 336888999998888743 2234455556676
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 453 YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
....|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7778888888888888732 567788888777788999888888888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-08 Score=81.83 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048533 411 YKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK 490 (591)
Q Consensus 411 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 490 (591)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.++. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3444555555566666666665555432 234455555556666666666666666666554322 45556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
.|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666542 224556666666666677777777776666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.7e-09 Score=96.32 Aligned_cols=200 Identities=14% Similarity=0.003 Sum_probs=110.5
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK-NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
|++++|..+++.+.+..+. + +.+ .|++++|...|+++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~---~----------~~~~~~~~~~A~~~~~~a~---------------------------- 43 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT---S----------FMKWKPDYDSAASEYAKAA---------------------------- 43 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC---C----------SSSCSCCHHHHHHHHHHHH----------------------------
T ss_pred chHHHHHHHHHHHHHHccc---c----------ccCCCCCHHHHHHHHHHHH----------------------------
Confidence 6778888888888775543 1 111 466777766665542
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc-----cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHH
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM-----PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV---VA--NIHLY 203 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~ 203 (591)
..|...|++++|+..|.++.+.... .-..+|+.+...|...|++++|+..|++..+... .+ -..++
T Consensus 44 ----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 119 (307)
T 2ifu_A 44 ----VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119 (307)
T ss_dssp ----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2366677777777777776553211 0133566666777777777777777776654311 01 12345
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhCCCCc-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 048533 204 NVLIHACCKSSDVDKVEKLLCEMEFKDVRA-----DLFTYNTLIALYCKKGMHYEALAVQDRMERE----GISPD-IVTY 273 (591)
Q Consensus 204 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 273 (591)
..+...|.. |++++|+..|++........ ...++..+...+...|++++|+..|++.... +..+. ..++
T Consensus 120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 555666666 66776666666654321000 0234555556666666666666666655442 11111 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATP 301 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 301 (591)
..++.++...|++++|...|++.. ..|
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 444455555566666666666555 444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-07 Score=88.69 Aligned_cols=185 Identities=6% Similarity=-0.005 Sum_probs=139.3
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK-HFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
+-..++.+..+.+..++|++.++.++..+|. ...+++.-..++...| .+++++.+++.++..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------------ 120 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------------ 120 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------------
Confidence 4445555556667788999999999999987 7788888888888888 59999999999998764
Q ss_pred hcCCCCCccchHHHHHHHHHhc-C-ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChh--------HHHHHHHHH
Q 048533 122 IHDDPDGNSHVLSWLVIFYANL-K-MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTD--------MVWKVYKKM 191 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~ 191 (591)
.+..+++....++.+. + ++++++++++++++.+++ |..+|+.-.-.+.+.+.++ ++++.++++
T Consensus 121 ------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 121 ------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 3445565555555555 6 889999999999998877 8889888777777666666 888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCC-------hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh
Q 048533 192 VQLGVVANIHLYNVLIHACCKSSD-------VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251 (591)
Q Consensus 192 ~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (591)
.+.++. |...|+.....+.+.+. ++++++.+++.+... +-|...|+.+-..+.+.|+.
T Consensus 194 I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 194 LRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 887766 77888887777777765 567777777776654 44666777666666655543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-08 Score=84.61 Aligned_cols=176 Identities=14% Similarity=0.033 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcC----CHHHHHHHH
Q 048533 321 EALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIG----DTASAMKVK 396 (591)
Q Consensus 321 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~ 396 (591)
+|+++|++..+.| ++..+..+...+...+++++|...|++..+.| +...+..|...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777764 66777777777878888888888888887765 56677777777776 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 048533 397 NRMLEAGLMLDQFTYKALIHGFCK----AKEMDIAKELLFGMLDAGFS-PSYCSYSWLVDGYCN----KNNEEALLKLLD 467 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 467 (591)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887754 66777777777776 77888888888888876521 026677778888877 778899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 048533 468 EFVSRGLCVDVSVYRALIRRFCKK-E-----KVDYAQRLFNLMQGNG 508 (591)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 508 (591)
+..+. ..++..+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88876 22455677777777653 3 7899999998888776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.4e-09 Score=82.33 Aligned_cols=103 Identities=12% Similarity=-0.070 Sum_probs=56.6
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
.-++..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..|+++++.+
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------- 77 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLD---------------- 77 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----------------
Confidence 34455555556666666666666655554 55555566666666666666666666555543
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
|.+..++..++.+|...|++++|++.|++.++.++. +..++.
T Consensus 78 --p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~ 119 (126)
T 4gco_A 78 --SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEARE 119 (126)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred --hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 223344555555556666666666666655555433 333333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-07 Score=83.57 Aligned_cols=176 Identities=14% Similarity=0.012 Sum_probs=129.1
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCccCHH
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVHNLMPHLH 166 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~ 166 (591)
+.+.+..++|+++++.++..++ .+..+++....++...| .++++++.++.++..+++ +..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP------------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~ 124 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNP------------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQ 124 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCc------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHH
Confidence 3344555688888888888763 34455666666666777 589999999999998887 888
Q ss_pred hHHHHHHHHHhc-C-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--------hHHHHHHHHhhCCCCcCcc
Q 048533 167 ACTVLLNSLAKD-R-LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD--------KVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 167 ~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~ 236 (591)
+|+.-...+... + ++++++++++.+.+..++ |..+|+.-.-++.+.|.++ ++++.+++++..+ +.|..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHH
Confidence 898888777776 6 888999999999987766 7778777666666666666 7888888887765 34777
Q ss_pred cHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048533 237 TYNTLIALYCKKGM-------HYEALAVQDRMEREGISPDIVTYNSLIHGFCREGR 285 (591)
Q Consensus 237 ~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 285 (591)
+|+.....+.+.+. ++++++.+++.+...+. |...|+.+-..+.+.|.
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 78877777777765 57777777777765433 66677666666655554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=83.39 Aligned_cols=126 Identities=10% Similarity=-0.026 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhccccchhcCCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 048533 11 TKFIKTISAIMLKGHWAKLLNPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTK 90 (591)
Q Consensus 11 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~ 90 (591)
.++...|...+..+.. ++..+...|+.......++..+...|++++|+..|+.+++..|. +..+|..++.++..
T Consensus 9 ~~~~~~l~~~~~~~~~---l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQI 82 (151)
T ss_dssp CHHHHHHHHHHHTSCC---TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 3444445555444321 11222233333334444455555556666666666666666655 56666666666666
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.|++++|+..|+++...+ |.++.++..++.+|.+.|++++|+..|+++++..
T Consensus 83 ~g~~~~Ai~~~~~al~l~------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFALG------------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHHS------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666666544 3344556666666666666666666666666653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=80.61 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
....+...+..+.+.|++++|+..|+++++.+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------------------PENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 45667788889999999999999999888765 445667888888899999999999999998
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
++.++. +..+|..+..++...|++++|++.|++..+..+. +...+..+.
T Consensus 74 l~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 74 IRLDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 887765 7788888888999999999999999988887654 555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=95.70 Aligned_cols=212 Identities=10% Similarity=-0.086 Sum_probs=148.5
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH-HHHh--hc
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTM-------IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN-ALVK--IH 123 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 123 (591)
.+++..|+..|..+.+..|. ..++|..+ +.++.+.++..+++..+.......+..-...+. .-+- +.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 58999999999999999998 78888888 688888888888888777766532211000000 0000 00
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVAN--IH 201 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 201 (591)
.......++....+..+...|++++|.++|+.+...++. +. ....+...+.+.++++.|+..|+...+.. .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 001122345666788899999999999999998876643 33 66667778889999999999998665532 111 23
Q ss_pred HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 202 LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 202 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 566778888999999999999998875432133 335667778888899999999999998876 4443333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-09 Score=85.85 Aligned_cols=111 Identities=7% Similarity=-0.001 Sum_probs=87.3
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhc
Q 048533 64 FKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANL 143 (591)
Q Consensus 64 f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (591)
|+.+++..|+ +..+++.++..+.+.|++++|+..|+++...+ |.++..+..++.+|...
T Consensus 25 l~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------------------P~~~~~~~~lg~~~~~~ 83 (151)
T 3gyz_A 25 LKDINAIPDD---MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------------------FYNVDYIMGLAAIYQIK 83 (151)
T ss_dssp TGGGCCSCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHH
Confidence 3344444555 67778888888888888888888888888765 45566777888888888
Q ss_pred CChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 144 KMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 144 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
|++++|+..|+++.+.++. +..+|..+..++...|++++|+..|+...+...
T Consensus 84 g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 84 EQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp TCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888888887765 677888888888888888888888888887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=102.77 Aligned_cols=155 Identities=8% Similarity=-0.103 Sum_probs=119.3
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV 170 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 170 (591)
.|++++|++.++++.+.+ +.+..++..++..|.+.|++++|++.|++..+.++. +..++..
T Consensus 2 ~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 62 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR------------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVAR 62 (568)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 478899999998887654 445667888999999999999999999999998765 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc--
Q 048533 171 LLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK-- 248 (591)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 248 (591)
+..++...|++++|.+.+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987654 67888999999999999999999999988764 34677888899999999
Q ss_pred -CChhHHHHHHHHHHHCCC
Q 048533 249 -GMHYEALAVQDRMEREGI 266 (591)
Q Consensus 249 -g~~~~a~~~~~~~~~~~~ 266 (591)
|++++|.+.+++..+.+.
T Consensus 141 ~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHhcCC
Confidence 999999999999887643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=94.79 Aligned_cols=197 Identities=7% Similarity=-0.062 Sum_probs=110.9
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHH
Q 048533 91 NKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTV 170 (591)
Q Consensus 91 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 170 (591)
.|++++|.++++++.+..... .+...+++++|...|+++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------------------------~~~~~~~~~~A~~~~~~a-------------- 42 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------------------------FMKWKPDYDSAASEYAKA-------------- 42 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------------------------SSSCSCCHHHHHHHHHHH--------------
T ss_pred cchHHHHHHHHHHHHHHcccc---------------------------ccCCCCCHHHHHHHHHHH--------------
Confidence 467788888888776642110 011146777887777665
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCCc-CcccHHH
Q 048533 171 LLNSLAKDRLTDMVWKVYKKMVQLGVVA-----NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVRA-DLFTYNT 240 (591)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ 240 (591)
...+...|++++|...|.+..+..... -..+|+.+...|...|++++|...|++.... |-+. -..++..
T Consensus 43 -~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 43 -AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677888888888888776532110 1345666777777777777777777765432 1000 1234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC---C----hhhHHH
Q 048533 241 LIALYCKKGMHYEALAVQDRMEREG----ISP-DIVTYNSLIHGFCREGRMREARRLFRDIKGATP---N----HVTYTT 308 (591)
Q Consensus 241 li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~ 308 (591)
+..+|.. |++++|+..|++..+.. ..+ ...++..+...|...|++++|+..|++.....| + ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 6666655 66666666666654421 000 123455556666666666666666665543111 1 113334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048533 309 LIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 309 li~~~~~~g~~~~a~~~~~~~~ 330 (591)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 4444555556666665555555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=82.48 Aligned_cols=111 Identities=7% Similarity=-0.006 Sum_probs=76.1
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHh
Q 048533 63 FFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYAN 142 (591)
Q Consensus 63 ~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (591)
.|+.+++..|+ +..++..++..+.+.|++++|+..|+++...+ |.+..++..++.+|..
T Consensus 9 ~~~~al~~~p~---~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 9 TIAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------------------HYDSRFFLGLGACRQA 67 (148)
T ss_dssp SHHHHTTCCHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHh---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------------------cccHHHHHHHHHHHHH
Confidence 34555554544 56666777777777777777777777776654 3345566667777777
Q ss_pred cCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 143 LKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 143 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.|++++|+..|+++.+.++. +..++..+..++...|++++|...|+...+..
T Consensus 68 ~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777776554 56667777777777777777777777776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-08 Score=82.91 Aligned_cols=123 Identities=9% Similarity=0.043 Sum_probs=100.4
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|++++|+..|+.+.+..|. +..++..++.++...|++++|+..|+++...+ +.+..+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~ 80 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------GENAEL 80 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------CSCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCCHHH
Confidence 348899999999999988886 78899999999999999999999999988754 334556
Q ss_pred HHHHHHH-HHhcCCh--HHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 133 LSWLVIF-YANLKMT--QDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 133 ~~~l~~~-~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+..++.+ |...|++ ++|+..|+++.+.++. +...+..+...+...|+++.|...|+.+.+..+.
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 7777887 7788998 9999999999887655 6778888888899999999999999998887543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-07 Score=79.73 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048533 377 NTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNK 456 (591)
Q Consensus 377 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (591)
..+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++.++.. +.+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334444455555555555554442 3344455555555555555555555555554432 22344444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 457 NNEEALLKLLDEFVSRGLCV---------------DVSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 457 g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
|++++|...++++.+..... ....+..+..++...|++++|...|+++.+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555555432210 013444444444455555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.1e-09 Score=98.43 Aligned_cols=162 Identities=9% Similarity=-0.088 Sum_probs=119.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch---HHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP---SVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 131 (591)
+++++|+..|+.+.+..|. ...++..++..+.+.|++++|+..|+++....+.... ...... .+....
T Consensus 127 ~~~~~A~~~~~~a~~~~p~---~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~------~~~~~~ 197 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLE---QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA------QALRLA 197 (336)
T ss_dssp EEEECCCCGGGCCHHHHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH------HHHHHH
T ss_pred eecccccchhcCCHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHH------HHHHHH
Confidence 5667777777777665554 6778889999999999999999999999987643310 000000 000135
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..|+++++.++. +..++..+..++...|++++|+..|+++.+..+. +...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 6777888888888888888888888887655 7788888888888888888888888888887654 6677777888888
Q ss_pred ccCChhhH-HHHHHHHh
Q 048533 212 KSSDVDKV-EKLLCEME 227 (591)
Q Consensus 212 ~~g~~~~a-~~~~~~~~ 227 (591)
+.|+.++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777 44555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-06 Score=80.74 Aligned_cols=136 Identities=8% Similarity=-0.031 Sum_probs=88.9
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC----------chHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH----------FKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
.-.++|++.+..++..+|. ...+++.-..++...|. +++++.+++.+...+
T Consensus 44 e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---------------- 104 (331)
T 3dss_A 44 ELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------------- 104 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----------------
Confidence 4445889999999988887 66666654444444333 566667776666654
Q ss_pred CCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRL-TDMVWKVYKKMVQLGVVANIH 201 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 201 (591)
|.+..+++.-..++.+.+ .+++++.+++++.+.+++ |..+|+.-.-.+...|. ++.+++.++.+.+.++. |..
T Consensus 105 --PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~S 180 (331)
T 3dss_A 105 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYS 180 (331)
T ss_dssp --TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHH
T ss_pred --CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHH
Confidence 334445555555555555 367777777777777766 77777777777777776 47777777777776655 666
Q ss_pred HHHHHHHHHHcc
Q 048533 202 LYNVLIHACCKS 213 (591)
Q Consensus 202 ~~~~ll~~~~~~ 213 (591)
.|+.....+.+.
T Consensus 181 AW~~R~~ll~~l 192 (331)
T 3dss_A 181 SWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666655554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=93.53 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++.... +.+..++..++.+|.+.|++++|+..++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455555666666666666666666655543 223344555555666666666666666666
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF 236 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 236 (591)
++.++. +..++..+..++...|++++|...|+...+.++. +...+...+....+. ..+... ........+.+..
T Consensus 65 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 138 (281)
T 2c2l_A 65 LELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESE 138 (281)
T ss_dssp TTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHH
Confidence 655443 4555666666666666666666666655543221 000111111111110 111111 1111122233333
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHhh
Q 048533 237 TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV-TYNSLIHGFCRE-GRMREARRLFRDIK 297 (591)
Q Consensus 237 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~ 297 (591)
....+... ..|++++|++.+++..+. .|+.. ....+...+.+. +.+++|.++|....
T Consensus 139 i~~~l~~l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 139 LHSYLTRL--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333222 256667777766666554 33332 223333333333 55677777777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-07 Score=78.96 Aligned_cols=121 Identities=10% Similarity=-0.067 Sum_probs=59.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|+++.|+..|+.+.+..|. +..++..++.++...|++++|+..++++...+ +
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------------~ 78 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------K 78 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------c
Confidence 33334445555555555555555444 45555555555555555555555555555432 2
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH--HHHHHHHhcCChhHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT--VLLNSLAKDRLTDMVWKVYKK 190 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~ 190 (591)
.+..++..++.+|...|++++|+..|+++.+.++. +...+. ..+..+...|++++|+..+..
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 22334444555555555555555555555554332 222332 222223444444554444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-06 Score=80.10 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=119.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 048533 379 LINAYCKIGDTASAMKVKNRMLEAGLM-LDQ----FTYKALIHGFCKAKEMDIAKELLFGMLDAGFS-PS----YCSYSW 448 (591)
Q Consensus 379 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 448 (591)
.+..+...|++++|..++++..+.... |+. ..+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 456677888888888888888764321 121 12334666667778999999999998873222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHH
Q 048533 449 LVDGYCNKNNEEALLKLLDEFVSR-----GLC-VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-SVIYT 517 (591)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~ 517 (591)
+...|...|++++|...++++.+. +.. ....++..+...|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 889999999999999999988841 111 12347888999999999999999999988752 22222 57888
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHH
Q 048533 518 SLAYAYWRAGE-PKACSDILDDMYR 541 (591)
Q Consensus 518 ~l~~~~~~~g~-~~~A~~~~~~~~~ 541 (591)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999998876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-08 Score=90.66 Aligned_cols=194 Identities=7% Similarity=-0.080 Sum_probs=127.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..+.+.|++++|+..|+++++.++. +...+..+..++.+.|++++|+..++...+..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455667788888999999999999998887655 7788888889999999999999999998887654 67788888888
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 289 (591)
+...|++++|...|++....+. .+...+...+....+.. .+ ..+..........+......+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRIA---KK-KRWNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHH---HH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 9999999999998888766431 11112222222222111 11 112222233334444444433332 26888889
Q ss_pred HHHHHHhhcCCCChhhH-HHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 048533 290 RRLFRDIKGATPNHVTY-TTLIDGYCRA-NDLEEALRLREVMAAK 332 (591)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~li~~~~~~-g~~~~a~~~~~~~~~~ 332 (591)
.+.++...+..|+.... ..+...+.+. +.+++|.++|..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 98888887767764433 3333334444 6678888888877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=80.66 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++++|+..|+++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------------------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444445555555555555555555554433 223334444455555555555555555555
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.++. +...+..+..++...|++++|...|+...+.
T Consensus 79 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 79 ALMDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554433 3444445555555555555555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-07 Score=77.35 Aligned_cols=129 Identities=9% Similarity=-0.080 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...|+++.... +.+..++..++.+|...|++++|+..+++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445667777778888888888887777654 2334566667777777788888888887777
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhhHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYN--VLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
+.++. +..++..+..++...|++++|...|+++.+..+. +...+. .....+.+.|++++|...+...
T Consensus 75 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 75 ELDKK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 76543 5667777777777777777777777777766443 333442 2333355667777777666654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-08 Score=87.07 Aligned_cols=201 Identities=7% Similarity=-0.130 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHH-------HHHHHhcCChHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWL-------VIFYANLKMTQDGLQV 152 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~ 152 (591)
..+..+..+ ..+++..|.+.|.++...++. ..+.+.-+ ...+.+.++..+++..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~------------------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~ 69 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDES------------------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ 69 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT------------------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChh------------------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHH
Confidence 344455555 689999999999999997743 34444444 3455555556667666
Q ss_pred HHHHhhCCCc-----cC---------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 153 FDQMRVHNLM-----PH---------------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 153 ~~~~~~~~~~-----~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
+.+..+..+. -+ ......+...+...|++++|.++|+.+...++ +....-.+...+.+
T Consensus 70 ~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~ 147 (282)
T 4f3v_A 70 LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGA 147 (282)
T ss_dssp HHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHH
Confidence 6666552110 00 22334556677778888888888877776543 22244445557777
Q ss_pred cCChhhHHHHHHHHhhCCCCcC--cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRAD--LFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD--IVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 288 (591)
.+++++|+..|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++
T Consensus 148 ~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 888888888887554431 111 23566677777778888888888877764432143 3355566677777788888
Q ss_pred HHHHHHHhhcCCCC
Q 048533 289 ARRLFRDIKGATPN 302 (591)
Q Consensus 289 A~~~~~~~~~~~~~ 302 (591)
|..+|+++....|+
T Consensus 227 A~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 227 AVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCc
Confidence 88888777765565
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-07 Score=73.84 Aligned_cols=111 Identities=11% Similarity=-0.091 Sum_probs=61.8
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.+..
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------------- 80 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE---------------- 80 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------
Confidence 33444444556666666666666655544 55566666666666666666666666665543
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHh
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAK 177 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 177 (591)
+.+..++..++.+|.+.|++++|++.|++..+.++. +...+..+..++..
T Consensus 81 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 --PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 223344555555666666666666666666555433 33344444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=74.67 Aligned_cols=120 Identities=11% Similarity=-0.010 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHH
Q 048533 75 KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFD 154 (591)
Q Consensus 75 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 154 (591)
+.+..++..++..+.+.|++++|+..++++.... +.+..++..++..|...|++++|++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 74 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN------------------PKDAKLYSNRAACYTKLLEFQLALKDCE 74 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC------------------TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3356667777888888888888888887777643 2334566667777777777777777777
Q ss_pred HHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 155 QMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
++.+..+. +...+..+..++...|++++|.+.|++..+.... +...+..+..++.+.|
T Consensus 75 ~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 75 ECIQLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 77776543 5666777777777777777777777777665433 3344444555544433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.6e-08 Score=77.85 Aligned_cols=110 Identities=9% Similarity=-0.202 Sum_probs=90.6
Q ss_pred CCCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 31 NPNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
+..+...|+.......++..+...|++++|+..|+.+....|. +..++..++.++.+.|++++|+..|+++...+
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 3344444444444455566677779999999999999998887 88999999999999999999999999998865
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
|.++.++..++.+|...|++++|++.|+++++.++
T Consensus 83 ----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 83 ----------------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45567788899999999999999999999988643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=74.42 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=51.5
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|+++.|+..|+.+.+..|. +..++..++.++...|++++|+..++++.... +
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------~ 77 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICID------------------P 77 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC------------------c
Confidence 33333445555555555555544443 44445555555555555555555555544432 1
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR 179 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 179 (591)
.+..++..++..|...|++++|+..|+++.+.++. +...+..+..++...|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 22233444444455555555555555555444332 3334444444444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-06 Score=75.77 Aligned_cols=125 Identities=13% Similarity=0.008 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048533 343 SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAK 422 (591)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 422 (591)
.+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..... +.+...+..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 33444445555555555554442 2344455555555555555555555555554442 223444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 423 EMDIAKELLFGMLDAGFSP---------------SYCSYSWLVDGYCNKNNEEALLKLLDEFVSR 472 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 472 (591)
++++|...++++.+..... ....+..+..+|...|++++|...++.+.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555432110 0134444555555555555555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=79.68 Aligned_cols=123 Identities=11% Similarity=0.041 Sum_probs=92.7
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHh
Q 048533 88 LTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHA 167 (591)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 167 (591)
+...|++++|+..++++...+ +.+..++..++..|...|++++|+..|+++.+.++. +...
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 80 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN------------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAEL 80 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHH
Confidence 346688888888888887754 344567777888888889999999999888887654 6677
Q ss_pred HHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC
Q 048533 168 CTVLLNS-LAKDRLT--DMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 168 ~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 230 (591)
+..+..+ +...|++ +.|...++.+.+..+. +...+..+...+...|++++|...+++.....
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777 6788887 8888888888887654 56777778888888888888888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-06 Score=77.34 Aligned_cols=167 Identities=9% Similarity=-0.029 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 048533 375 TCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQ-----FTYKALIHGFCKAKEMDIAKELLFGMLDAGF---SPS--YC 444 (591)
Q Consensus 375 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 444 (591)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445666777888888888888877765322111 2234455667788899999999998875321 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-H
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVS---RGLC-V--DVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-S 513 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~ 513 (591)
+++.+...|...|++++|...++++.+ .... + ...++..+..+|...|++++|...+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998873 2111 1 1258889999999999999999999988753 11111 5
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 048533 514 VIYTSLAYAYWRAGEPKAC-SDILDDMYR 541 (591)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 541 (591)
.+|..+..+|.+.|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.3e-07 Score=70.71 Aligned_cols=113 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556667777777777777777777776543 2233455666667777777777777777776
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
+.++. +..++..+...+...|+++.|...++++.+..+. +...+..+...+
T Consensus 71 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 71 ELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 65443 5566666677777777777777777776665433 344444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.5e-07 Score=71.75 Aligned_cols=120 Identities=16% Similarity=0.006 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++..+...|++++|+..++++.... +.+..++..++..|...|++++|+..+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN------------------PANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 34556667777777777777777777776643 223445666667777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
.+..+. +...+..+...+...|+++.|...|+...+..+. +...+..+..++.+.|++
T Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 766443 5666666777777777777777777777665443 455555566666555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=89.04 Aligned_cols=134 Identities=18% Similarity=-0.013 Sum_probs=112.3
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC------------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 41 TAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH------------SLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 41 ~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
......++..+...|++++|+..|+.+++..|..+. ...++..++.++.+.|++++|+..+++++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566777777889999999999999998887210 05788999999999999999999999999865
Q ss_pred CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHH-HHH
Q 048533 109 FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMV-WKV 187 (591)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~ 187 (591)
|.+..++..++.+|...|++++|+..|+++++.++. +..++..+..++.+.|+.++| ...
T Consensus 227 ------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 227 ------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998765 788899999999999999888 456
Q ss_pred HHHHHH
Q 048533 188 YKKMVQ 193 (591)
Q Consensus 188 ~~~~~~ 193 (591)
|..|..
T Consensus 288 ~~~~~~ 293 (336)
T 1p5q_A 288 YANMFE 293 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-07 Score=73.49 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=62.2
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCC
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDP 126 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (591)
++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++...+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------ 68 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------------------ 68 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 344445557777777777777776665 66667777777777777777777777776654
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
|.+..++..++.+|...|++++|+..|+++.+.+
T Consensus 69 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 69 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3344556666677777777777777777766654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-06 Score=76.52 Aligned_cols=172 Identities=6% Similarity=-0.048 Sum_probs=119.8
Q ss_pred HHHcCCCch-HHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC----------hHHHHHHHHH
Q 048533 87 ILTKNKHFK-SAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM----------TQDGLQVFDQ 155 (591)
Q Consensus 87 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~ 155 (591)
...+.|.+. +|+.+++.++..+|... .+++.-..+....+. +++++.+++.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~y------------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~ 99 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFA------------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLES 99 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCH------------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhH------------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence 344566666 78999999988775432 333333222222222 6789999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hhhHHHHHHHHhhCCCC
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDR--LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSD-VDKVEKLLCEMEFKDVR 232 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~ 232 (591)
++..+++ +..+|+.-.-.+...+ .++.++.+++.+.+..+. |..+|+.-.-++...|. ++++++.+++++..+ +
T Consensus 100 ~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p 176 (331)
T 3dss_A 100 CLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F 176 (331)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-S
T ss_pred HHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-C
Confidence 9998877 8889988888888877 478999999999988776 88888887777778887 588999999988875 4
Q ss_pred cCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKK--------------GMHYEALAVQDRMEREGISPDIVTYNSLIHGF 280 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 280 (591)
.|..+|+.....+... +.++++++.+.+.....+. |..+|+-+-..+
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5777888777666655 3355666666666654322 555555443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=75.57 Aligned_cols=104 Identities=6% Similarity=-0.232 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 37 SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
.|........++..+...|++++|+..|+.+....|. +..++..++.++...|++++|+..|+++...+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 85 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------- 85 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------
Confidence 3434444455666777789999999999999998887 88999999999999999999999999998865
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
|.++.++..++.+|...|++++|+..|++.++..+
T Consensus 86 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 ----------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ----------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45667788899999999999999999999988643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.6e-07 Score=71.02 Aligned_cols=113 Identities=16% Similarity=0.037 Sum_probs=73.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
...+..++..|...|++++|++.|+++.+..+. +..++..+...+...|+++.|...++++.+..+. +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 445666777777778888888887777766543 5666777777777777777777777777665433 55566666667
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHH
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALY 245 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (591)
+...|++++|...++++.... +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777666543 22333444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-05 Score=73.97 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcC------CCC-hh
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMER----E-GISPD-IVTYNSLIHGFCREGRMREARRLFRDIKGA------TPN-HV 304 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~ 304 (591)
++.+..+|...|++++|+..|++..+ . +..+. ..++..+...|...|++++|...+++.... .+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44444555555555555555554442 0 11111 124445555555555555555555544320 011 23
Q ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHH
Q 048533 305 TYTTLIDGYCRAN-DLEEALRLREVM 329 (591)
Q Consensus 305 ~~~~li~~~~~~g-~~~~a~~~~~~~ 329 (591)
++..+..+|.+.| ++++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4444444555555 235555444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-08 Score=84.38 Aligned_cols=164 Identities=10% Similarity=-0.079 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH---HHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV---LNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 131 (591)
|++++|.+.++......+. ....+..++..+.+.|++++|+..|+++....+...... ...... .....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-----~~~~~ 89 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKVQ---SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK-----NIEIS 89 (198)
T ss_dssp ----CCCSGGGCCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH-----HHHHH
T ss_pred hhccccCchhhCCHHHHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH-----HHHHH
Confidence 5566666666544332222 455677889999999999999999999987543221000 000000 00025
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..++++++.++. +..++..+..++...|+++.|+..|+...+..+. +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 6777888888899999999999888887654 6778888888888888888888888888877544 5667777777777
Q ss_pred ccCChhhHH-HHHHHHhh
Q 048533 212 KSSDVDKVE-KLLCEMEF 228 (591)
Q Consensus 212 ~~g~~~~a~-~~~~~~~~ 228 (591)
..++.+++. ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 766666665 44444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-07 Score=72.01 Aligned_cols=100 Identities=6% Similarity=-0.071 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ |.+..++..++.+|.+.|++++|+..++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------------------PEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566778888888888888888888887754 344567777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
++.++. +..++..+..++...|++++|...|++..+..
T Consensus 65 l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 65 IEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 887655 67778888888888888888888888887754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=81.38 Aligned_cols=173 Identities=8% Similarity=-0.034 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+...+..+...|++++|.+.+++..+........ .... ..+..++..|...|++++|+..++++.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFL----------QWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH--HHHH----------HHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH--HHHH----------HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4445567888899999999999999887754332111 1111 224456677888889999999998887
Q ss_pred hCCCc---cC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 158 VHNLM---PH--LHACTVLLNSLAKDRLTDMVWKVYKKMVQ---LGVV-A--NIHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 158 ~~~~~---~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
+.... +. ..+++.+...|...|++++|+..|+++.+ .... + ...++..+...|.+.|++++|...+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 64221 11 44778888888888888888888888763 2111 1 1146677777778888888888877776
Q ss_pred hhCC----CCc-CcccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 048533 227 EFKD----VRA-DLFTYNTLIALYCKKGMHYEA-LAVQDRME 262 (591)
Q Consensus 227 ~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 262 (591)
.... ... -..+|..+..++...|++++| ...+++..
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5431 000 134566667777777777777 55565543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=79.69 Aligned_cols=156 Identities=12% Similarity=-0.017 Sum_probs=86.0
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-cc
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH----NL-MP 163 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~ 163 (591)
...|++++|.+.++.+.. ++.....++..++..|...|++++|+..+++..+. +. ..
T Consensus 3 ~~~g~~~~A~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 64 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA------------------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64 (203)
T ss_dssp ----CHHHHHHHHHHHHT------------------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred cccccHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 456788888875544432 12234456777777888888888888888877662 11 11
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCC-
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQL----GVVA--NIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVR- 232 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~- 232 (591)
...++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3445666677777777777777777766543 1011 1234555566666666666666666665421 100
Q ss_pred cCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 233 ADLFTYNTLIALYCKKGMHYEALAVQDRME 262 (591)
Q Consensus 233 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 262 (591)
.-..++..+..++...|++++|.+.+++..
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 001123445555555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.3e-07 Score=77.23 Aligned_cols=156 Identities=8% Similarity=-0.156 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHH
Q 048533 386 IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLD----AGFS-PSYCSYSWLVDGYCNKNNEE 460 (591)
Q Consensus 386 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~ 460 (591)
.|++++|.+.++.+.. ........+..+...+...|++++|...+++.++ .+.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 1112344555555555556666666665555543 1111 12344555666666777777
Q ss_pred HHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHHcCCh
Q 048533 461 ALLKLLDEFVSR----GLC--VDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN----GILG-DSVIYTSLAYAYWRAGEP 529 (591)
Q Consensus 461 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 529 (591)
+|...+++..+. +-. ....++..+...+...|++++|...+++..+. +-.. -..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777666543 101 12345666777777778888887777776532 1111 123456777778888888
Q ss_pred hHHHHHHHHHHHC
Q 048533 530 KACSDILDDMYRR 542 (591)
Q Consensus 530 ~~A~~~~~~~~~~ 542 (591)
++|.+.+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=6e-07 Score=71.31 Aligned_cols=105 Identities=11% Similarity=-0.055 Sum_probs=83.3
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHh
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVK 121 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 121 (591)
....-|+..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++++.++......
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------ 79 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY------ 79 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh------
Confidence 34456788888889999999999999999887 889999999999999999999999999887543211100
Q ss_pred hcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 122 IHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.....++..++.+|...|++++|++.|++.++..
T Consensus 80 -----~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 80 -----KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0012356778888999999999999999988754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-07 Score=74.37 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=57.9
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..|+++...+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 75 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------------- 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 3344445555556666666666666666555 55666666666666666666666666666543
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|+++++.+
T Consensus 76 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 ----PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2334455556666666666666666666665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=72.65 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=63.5
Q ss_pred cCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 52 NCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 52 ~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|++++|+..|+.+++..|+ +..++..++.++...|++++|+..|+++.+.+ |.+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------P~~~~ 86 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------PKDIA 86 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHH
Confidence 3457788888888888777776 67777778888888888888888887777754 33445
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
++..++.+|...|++++|+..|+++++.+
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66667777777777778877777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-06 Score=66.50 Aligned_cols=108 Identities=10% Similarity=-0.117 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4556677777777788888877777776643 2334556666777777777777777777777
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
+.++. +...+..+..++...|+++.|...++...+.++. +...+..
T Consensus 66 ~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 111 (118)
T 1elw_A 66 DLKPD-WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEG 111 (118)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 76543 5666777777777777777777777777765443 3334333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=68.61 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHHH
Q 048533 445 SYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGD----SVIYTS 518 (591)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 518 (591)
.+..++..+.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..+++.++.+. .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4556677777777777777777777776543 677777777777778888888877777765311 111 135666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 519 LAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRS 553 (591)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 553 (591)
+..++...|++++|++.|++.++. .|++.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777788888888888888887774 355554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=66.72 Aligned_cols=107 Identities=11% Similarity=-0.107 Sum_probs=88.1
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..++..+...|++++|+..|+.+....|. +..++..++.++...|++++|...++++....
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------- 68 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---------------- 68 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----------------
Confidence 34455556679999999999999998876 78889999999999999999999999998764
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN 173 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 173 (591)
+.+..++..++.+|...|++++|.+.+++..+.++. +...+..+..
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 334567888899999999999999999999987654 5555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-07 Score=89.85 Aligned_cols=120 Identities=9% Similarity=-0.070 Sum_probs=96.0
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++.+.+ +
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------p 71 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------K 71 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------T
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------C
Confidence 44556679999999999999998887 78899999999999999999999999998864 4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNS--LAKDRLTDMVWKVYK 189 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 189 (591)
.+..++..++.+|.+.|++++|++.|+++.+.++. +..++..+..+ +.+.|++++|++.++
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45667888899999999999999999999887654 44556656555 778899999999888
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=69.16 Aligned_cols=97 Identities=11% Similarity=-0.052 Sum_probs=68.1
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCc
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (591)
.+...|++++|+..|+.+.+..|+.+....+++.++.++.+.|++++|+..|+++....+.. +..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~ 75 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------------DKA 75 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------------TTH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------------ccc
Confidence 33445788888888888887777633333677778888888888888888888877754321 111
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+.++..++.+|...|++++|+..|+++.+..+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44566777778888888888888888777643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=68.32 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=26.9
Q ss_pred hcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 048533 51 YNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIAL 106 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 106 (591)
+...|++++|+..|+.+.+..|. +..++..++.++...|++++|+..++++.+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33345555555555555554443 444455555555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.9e-07 Score=77.15 Aligned_cols=131 Identities=13% Similarity=0.008 Sum_probs=99.1
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC--C-----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH--S-----------LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~--~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
...++..+...|++++|+..|+.+++..|..+. . ..++..++.++.+.|++++|+..++++....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 445566667789999999999999987776221 0 2778899999999999999999999998864
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH-HHHH
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW-KVYK 189 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~ 189 (591)
+.+..++..++.+|...|++++|+..|++..+.++. +..++..+..++...++.+++. ..+.
T Consensus 119 ----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 181 (198)
T 2fbn_A 119 ----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFG 181 (198)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------
T ss_pred ----------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888999999999999999999999988665 6778888888887777666655 4455
Q ss_pred HHHH
Q 048533 190 KMVQ 193 (591)
Q Consensus 190 ~~~~ 193 (591)
.+..
T Consensus 182 ~~f~ 185 (198)
T 2fbn_A 182 GMFD 185 (198)
T ss_dssp ----
T ss_pred HHhc
Confidence 4443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=72.21 Aligned_cols=102 Identities=11% Similarity=-0.066 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+.+.|++++|+..|+++...+ +.+..++..++.+|.+.|++++|+..|+++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA------------------PANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45667788888899999999999998888765 345567778888888999999999999988
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
++.++. +...|..+..++...|++++|+..|++..+..+.
T Consensus 72 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 72 TVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 887765 6788888888888889999999888888876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-07 Score=69.43 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+.+.|++++|+..|+++.+.+ |.+..++..++.++...|++++|+..|+++++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 81 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE------------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777788888888888888877754 3445667777777888888888888888887776
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+. +..++..+..++...|++++|+..+++..+..
T Consensus 82 P~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55 66677777777777888888888887777653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=93.15 Aligned_cols=161 Identities=8% Similarity=-0.070 Sum_probs=107.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCch---HHHHHHHhhcCCCCCccc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTP---SVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 131 (591)
+++++|+..|+.+.+..|. ....+..++..+.+.|++++|+..|+++....+.... ......- +....
T Consensus 248 ~~~~~A~~~~~~~~~~~~~---~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~------~~~~~ 318 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLE---QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE------SFLLA 318 (457)
T ss_dssp EEEECCCCGGGSCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH------HHHHH
T ss_pred hhcccCcchhhcCHHHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH------HHHHH
Confidence 4566777777766655554 5677889999999999999999999999886533210 0000000 00135
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACC 211 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 211 (591)
++..++.+|.+.|++++|+..++++++.++. +..+|..+..++...|++++|+..|+++.+..+. +...+..+..++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6667777788888888888888888777654 6777777777888888888888888887776543 4556666777777
Q ss_pred ccCChhhHHH-HHHHH
Q 048533 212 KSSDVDKVEK-LLCEM 226 (591)
Q Consensus 212 ~~g~~~~a~~-~~~~~ 226 (591)
+.++.+++.+ .+..|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666543 34444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.6e-06 Score=68.71 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=51.2
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+.+..|+.+....++..++.++...|++++|+..++++....
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 95 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------------- 95 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------------
Confidence 333444444455666666666666655444300004445555555666666666666655555432
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|++..+.+
T Consensus 96 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 96 ----GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2223344455555555555555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-06 Score=67.90 Aligned_cols=117 Identities=12% Similarity=-0.071 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
.+...+..++..+...|++++|+..|+++....+.. . ....++..++..|...|++++|+..+++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~-------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--Q-------------DQAVLHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH--H-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc--h-------------HHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 467888899999999999999999999998754321 0 0145677788889999999999999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
..+..+. +...+..+..++...|++++|...|++..+..+. +...+..+...
T Consensus 91 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 91 AIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 8887654 6778888888999999999999999998886543 44555444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.1e-07 Score=71.12 Aligned_cols=90 Identities=8% Similarity=0.086 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
.|++++|+..|+.+++..++.|.+..++..++.++...|++++|+..|+++.+.+ |.+..++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~ 64 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------------------PNHQALR 64 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCchHHH
Confidence 4789999999999998632222367888899999999999999999999998865 4456678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..++.+|.+.|++++|+..|++.++..+
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999887644
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-06 Score=67.64 Aligned_cols=99 Identities=11% Similarity=0.000 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+...+..++..+...|++++|+..|+++...+ +.+..++..++.+|...|++++|+..++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC------------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56667777777777777777777777776654 233455666677777777777777777777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.+.++. +...+..+..++...|+++.|+..|+.+.+.
T Consensus 70 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 766544 5666677777777777777777777766654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-06 Score=65.51 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.++.++..+.+.|++++|+..|+.+....+.. +....++..++.+|.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~ 68 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG---------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667788888888888888888887754321 111246677788888888888888888888876
Q ss_pred CCccC---HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 160 NLMPH---LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 160 ~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
.+. + ..++..+..++...|+++.|...|+.+.+..
T Consensus 69 ~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 69 YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 544 3 5667777888888888888888888887764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-06 Score=68.04 Aligned_cols=100 Identities=10% Similarity=-0.096 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 048533 40 STAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNAL 119 (591)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 119 (591)
.......++..+...|+++.|+..|+.+++..|. +..++..++.++...|++++|+..++++...+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------- 73 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD----------- 73 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------
Confidence 3444455667777789999999999999998887 78899999999999999999999999998865
Q ss_pred HhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 120 VKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+.+..++..++.+|...|++++|+..|+++.+..
T Consensus 74 -------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 74 -------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 3455678889999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.2e-06 Score=83.15 Aligned_cols=179 Identities=10% Similarity=-0.027 Sum_probs=129.7
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC----------chHHHHHHHHHHHcCCCCchHHHHH
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH----------FKSAQNMLEKIALRDFLSTPSVLNA 118 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 118 (591)
.........++|++.++.+++.+|. ...+|+.-..++...|+ +++++..++.+.+.+
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---------- 103 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------- 103 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC----------
Confidence 3344446677899999999999987 78888877777777777 888888888888765
Q ss_pred HHhhcCCCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHCC
Q 048533 119 LVKIHDDPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDR-LTDMVWKVYKKMVQLG 195 (591)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~ 195 (591)
|.+..+|..-..++.+.+ +++++++.++++.+.+++ +..+|+.-...+.+.| .++++++.++++.+.+
T Consensus 104 --------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 104 --------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp --------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred --------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 344556666666777778 568889999988888877 8888888888888888 7888888888888877
Q ss_pred CCCCHHHHHHHHHHHHcc--------------CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh
Q 048533 196 VVANIHLYNVLIHACCKS--------------SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH 251 (591)
Q Consensus 196 ~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 251 (591)
+. +...|+.....+.+. +.++++.+.+++....+ +-|..+|+.+...+.+.++.
T Consensus 175 p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 175 FS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred CC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 66 777777766665553 33556666666665543 33555666655555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.6e-06 Score=63.23 Aligned_cols=103 Identities=8% Similarity=-0.020 Sum_probs=81.8
Q ss_pred CCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 048533 127 DGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-ANIHLYNV 205 (591)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 205 (591)
|.+..++..++..+...|++++|+..|+++.+..+. +..++..+..++...|++++|.+.+++..+.... .+...+..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 345567777888888999999999999998887654 6778888888888888899998888888876432 14667777
Q ss_pred HHHHHHcc-CChhhHHHHHHHHhhCC
Q 048533 206 LIHACCKS-SDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 206 ll~~~~~~-g~~~~a~~~~~~~~~~~ 230 (591)
+..++.+. |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=67.66 Aligned_cols=100 Identities=14% Similarity=0.021 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|...++++.... +.+..++..++..|...|++++|+..++++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD------------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4456667777777777777777777776643 2234556667777777777777777777776
Q ss_pred hCCCc--cC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 158 VHNLM--PH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 158 ~~~~~--~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+..+. ++ ..++..+..++...|+++.|.+.|+.+.+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 65332 11 5566666777777777777777777776653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=64.07 Aligned_cols=111 Identities=12% Similarity=0.124 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 048533 444 CSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGI--LGD----SVIYT 517 (591)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~ 517 (591)
..+..+...+...|+++.|...++++.+..+ .+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3455566666667777777777777666533 2566666777777777777777777777665321 111 55666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 518 SLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
.+..++...|++++|...|+++.+.. |++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 77777777777777777777777753 355444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=83.81 Aligned_cols=131 Identities=13% Similarity=-0.040 Sum_probs=104.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCC------------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKH------------SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
....++..+.+.|+++.|+..|+.+++..|..+. ...+|..++.++.+.|++++|+..+++++..+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Confidence 4455677777789999999999999998886210 05788899999999999999999999999865
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH-HHHH
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW-KVYK 189 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~ 189 (591)
+.+..++..++.+|...|++++|+..|+++++.++. +..++..+..++.+.++.+++. ..+.
T Consensus 348 ----------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 348 ----------------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998765 6778888888888888877665 3444
Q ss_pred HHH
Q 048533 190 KMV 192 (591)
Q Consensus 190 ~~~ 192 (591)
.|.
T Consensus 411 ~~f 413 (457)
T 1kt0_A 411 NMF 413 (457)
T ss_dssp HC-
T ss_pred HHH
Confidence 443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=80.87 Aligned_cols=146 Identities=8% Similarity=-0.072 Sum_probs=58.8
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
....++..+...|++++|+..|+.+++..|. +.. +...|+++++...+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~--------~~~~~~~~~~~~~l~-------------------- 229 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFM--------FQLYGKYQDMALAVK-------------------- 229 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHH--------HTCCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chh--------hhhcccHHHHHHHHH--------------------
Confidence 3455667777778888888888888877664 220 111122222211110
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
..++..++.+|.+.|++++|+..++++++.++. +..+|..+..++...|++++|+..|+++.+..+. +...
T Consensus 230 -------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a 300 (338)
T 2if4_A 230 -------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAI 300 (338)
T ss_dssp -------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHH
Confidence 013444455555555555555555555554432 4455555555555555555555555555444322 2333
Q ss_pred HHHHHHH-HHccCChhhHHHHHHHHhh
Q 048533 203 YNVLIHA-CCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 203 ~~~ll~~-~~~~g~~~~a~~~~~~~~~ 228 (591)
+..+... ....+..+.+...|.++..
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3333333 1223344455555555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.7e-05 Score=73.92 Aligned_cols=195 Identities=10% Similarity=-0.059 Sum_probs=114.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCccC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-
Q 048533 136 LVIFYANLKMTQDGLQVFDQMRVHNLMPH----------------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA- 198 (591)
Q Consensus 136 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 198 (591)
-+..+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.-...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34557888999999999999988644321 1246777788888888888888887765431111
Q ss_pred CH----HHHHHHHHHHHccCChhhHHHHHHHHhhC----CCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 048533 199 NI----HLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMERE--GI- 266 (591)
Q Consensus 199 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~- 266 (591)
+. .+.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333344557777777777665431 1111 1335566677777777777777777765442 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc----C-CC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 267 -SP-DIVTYNSLIHGFCREGRMREARRLFRDIKG----A-TP-N--HVTYTTLIDGYCRANDLEEALRLREVMA 330 (591)
Q Consensus 267 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 330 (591)
.+ ...++..++..|...|++++|..++++... . .| . ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 134566667777777777777777766543 1 11 1 1234444555556666666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-06 Score=67.44 Aligned_cols=102 Identities=10% Similarity=-0.021 Sum_probs=79.2
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCC----CHH-----HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKH----SLQ-----SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~----~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
.+....+.|++++|+..|+.+++..|+++. +.. +|..++.++.+.|++++|+..++++++. |+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--------~n 88 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--------FN 88 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------hh
Confidence 344455569999999999999999887432 233 8889999999999999999999999875 00
Q ss_pred HHHhhcCCCCCccchH----HHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 118 ALVKIHDDPDGNSHVL----SWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
... ...|++...| ...+.++...|++++|+..|++.++.
T Consensus 89 ~~~---e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 89 RRG---ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHC---CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccc---cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 000 1124455666 88899999999999999999998875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.2e-05 Score=73.69 Aligned_cols=197 Identities=10% Similarity=-0.014 Sum_probs=98.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 048533 310 IDGYCRANDLEEALRLREVMAAKGVYPG----------------VVTYNSILRKLCKEGRIRDANRLLNEMNEKKIA-PD 372 (591)
Q Consensus 310 i~~~~~~g~~~~a~~~~~~~~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 372 (591)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3455667777777777777776532211 012455666666666776666666655432101 11
Q ss_pred hH----HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 048533 373 NV----TCNTLINAYCKIGDTASAMKVKNRMLEA----GLMLD-QFTYKALIHGFCKAKEMDIAKELLFGMLDA--GF-- 439 (591)
Q Consensus 373 ~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 439 (591)
.. +.+.+...+...|+.+.+..+++..... +..+. ..++..+...+...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1122222233345666666666554321 11111 334555566666666666666666655431 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 440 SP-SYCSYSWLVDGYCNKNNEEALLKLLDEFVSR--GL-CV-D--VSVYRALIRRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 440 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 506 (591)
.+ ...++..++..|...|++++|..++++.... .. .| . ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1234555556666666666666666555432 01 11 1 22344444455555666666666555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.5e-07 Score=88.34 Aligned_cols=124 Identities=9% Similarity=-0.077 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+..++..+.+.|++++|++.|+++.+.+ +.+..++..++.+|.+.|++++|++.++++.+.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445667778899999999999888754 3455678888888999999999999999998887
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChhhHHHHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA--CCKSSDVDKVEKLLC 224 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 224 (591)
+. +..++..+..++...|++++|++.|+++.+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 71 p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 KK-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 65 7788888889999999999999999998887544 34455555555 777888888888887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-06 Score=68.98 Aligned_cols=101 Identities=8% Similarity=-0.053 Sum_probs=72.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhh--------CCC-------CCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESA--------VPN-------YKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRD 108 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~--------~p~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 108 (591)
..-.+..+.+.|+++.|+..|+.+++. .|. .+....++..++.++.+.|++++|+..+++++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344566666779999999999999886 121 01244667778888888888888888888877754
Q ss_pred CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 109 FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
|.+..++..++.+|...|++++|+..|++.++.++.
T Consensus 94 ------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 94 ------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred ------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 344566777777888888888888888887776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=68.02 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcC-------CCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRD-------FLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGL 150 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 150 (591)
...+...+..+.+.|++++|+..|+++...- .+.++... . ..+....++..++.+|.+.|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWV-E------LDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHH-H------HHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-H------HHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4556788999999999999999999988741 01111000 0 01334467888889999999999999
Q ss_pred HHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 151 QVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
..++++++.++. +..+|..+..++...|+++.|...|+...+..+.
T Consensus 84 ~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 84 ETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999999988765 7888999999999999999999999998887543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=77.09 Aligned_cols=138 Identities=9% Similarity=-0.113 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc-hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST-PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
...+..++..+.+.|++++|+..|+++.+...... ....... ....+....++..++.+|.+.|++++|++.++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~---~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG---AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHH---GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHH---HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34567889999999999999999999886210000 0000000 0011223456777888888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVE 220 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 220 (591)
++.++. +..++..+..++...|++++|+..|+++.+..+. +...+..+..++.+.++.+++.
T Consensus 300 l~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 300 LEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 877654 6777888888888888888888888888776543 5566666666666666555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.18 E-value=5.5e-06 Score=79.35 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=98.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhh----------------hCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAES----------------AVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~----------------~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
...++..+...|++++|+..|+.+++ ..|. ...++..++.++.+.|++++|+..++++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~---~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV---ALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34456667778999999999999987 3333 5678889999999999999999999999875
Q ss_pred CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 108 DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
+ +.+..++..++.+|...|++++|++.|+++.+..+. +...+..+..++...++.+++.
T Consensus 303 ~------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 D------------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp C------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C------------------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455678888999999999999999999999998765 6777777777777776666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=65.97 Aligned_cols=133 Identities=12% Similarity=-0.060 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHH
Q 048533 410 TYKALIHGFCKAKEMDIAKELLFGMLDAGF-SPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSRG----L-CVDVS 479 (591)
Q Consensus 410 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~ 479 (591)
++..+...+...|++++|...+.+.++... .++ ..++..+...+...|++++|...++++.+.. . .....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344445555555555555555555543110 011 1345556666667777777777777665421 0 01144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGN----GILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
++..+...+...|++++|...+++..+. +..+. ...+..+..++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777777888888888888776642 11111 356677888888888888888888887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=78.92 Aligned_cols=133 Identities=8% Similarity=-0.063 Sum_probs=94.2
Q ss_pred hcCCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 51 YNCCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 51 ~~~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
+..+|++++|+.+++.+++. .|+.++...++..++.+|..+|++++|..++++++... . ..++.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------~--~~lG~~ 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY--------M--KLYHHN 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------H--HHSCTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------H--HHcCCC
Confidence 34569999999999998764 34434456778899999999999999999999877521 0 111223
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC-----CCc-cC-HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH-----NLM-PH-LHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
.|.....++.|+..|..+|++++|+.+++++++. |.. |+ ..+.+.+..++...+.++.|..+|..+.+
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777888999999999999998887652 322 22 33445555666677777777777777754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-06 Score=64.91 Aligned_cols=91 Identities=10% Similarity=-0.122 Sum_probs=65.3
Q ss_pred cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 90 KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 90 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
..|++++|+..|+++.+.++. .|.+..++..++.+|...|++++|+..|+++++.++. +..++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~---------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 65 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ---------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRV 65 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC---------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 467888888888888765311 1234456777888888888888888888888887665 677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 170 VLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
.+..++...|++++|+..+++..+..+
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888877543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=62.43 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH
Q 048533 58 SLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV 137 (591)
Q Consensus 58 ~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (591)
+.|+..|+.+.+..|. +..++..++.++...|++++|+..|+++...+ +.+..++..++
T Consensus 2 ~~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la 60 (115)
T 2kat_A 2 QAITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------------------PTYSVAWKWLG 60 (115)
T ss_dssp CCHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------------------CCcHHHHHHHH
Confidence 3578899999887776 78899999999999999999999999998765 34456778889
Q ss_pred HHHHhcCChHHHHHHHHHHhhCC
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.+|...|++++|+..|++..+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 61 KTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999988753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00012 Score=74.26 Aligned_cols=173 Identities=7% Similarity=-0.040 Sum_probs=134.4
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCC
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKM----------TQDGLQVFDQMRVHNL 161 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~ 161 (591)
...++|++.++.++..++ .+..+|+.-..++...|+ ++++++.++.+.+.++
T Consensus 43 ~~~eeal~~~~~~l~~nP------------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 43 ELDESVLELTSQILGANP------------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHCc------------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 444677999999998764 344556666666666666 8999999999999988
Q ss_pred ccCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhhHHHHHHHHhhCCCCcCcccH
Q 048533 162 MPHLHACTVLLNSLAKDR--LTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS-DVDKVEKLLCEMEFKDVRADLFTY 238 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~ 238 (591)
+ +..+|+.-.-++.+.+ +++++++.++++.+.++. +..+|+....++.+.| .++++.+.++++++.+ +-+..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 8 9999999999999999 679999999999998876 8888988888888888 8999999999998875 4577888
Q ss_pred HHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 239 NTLIALYCKK--------------GMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRM 286 (591)
Q Consensus 239 ~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 286 (591)
+.....+.+. +.++++++.+++.....+. +...|+.+...+.+.++.
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 8887777664 4457777777777665322 556666666666555553
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=65.24 Aligned_cols=97 Identities=14% Similarity=-0.060 Sum_probs=62.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc-C----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----H
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP-H----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV-AN----I 200 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 200 (591)
.++..++..|...|++++|+..+++..+..... + ..++..+...+...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 466778888899999999999998877642211 1 235667777777788888888777776543111 01 2
Q ss_pred HHHHHHHHHHHccCChhhHHHHHHHHh
Q 048533 201 HLYNVLIHACCKSSDVDKVEKLLCEME 227 (591)
Q Consensus 201 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 227 (591)
..+..+...+...|++++|...+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555556666666666666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=76.54 Aligned_cols=149 Identities=11% Similarity=-0.081 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+.+.|++++|+..|+++....+.. . .+...++..++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~--~------------------------~~~~~~~~~~~~~~l~--- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD--F------------------------MFQLYGKYQDMALAVK--- 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH--H------------------------HHTCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc--h------------------------hhhhcccHHHHHHHHH---
Confidence 4557788999999999999999999988754210 0 1222344444443321
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
...|..+..++.+.|+++.|+..++..++.... +...|..+..++...|++++|...|++..... +.+...
T Consensus 230 -------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a 300 (338)
T 2if4_A 230 -------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAI 300 (338)
T ss_dssp -------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 237888999999999999999999999987654 78889999999999999999999999998764 335566
Q ss_pred HHHHHHH-HHhcCChhHHHHHHHHHHHC
Q 048533 238 YNTLIAL-YCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 238 ~~~li~~-~~~~g~~~~a~~~~~~~~~~ 264 (591)
+..+... ....+..+.+...|.+|...
T Consensus 301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 301 RRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6666655 34456778888999988765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.6e-05 Score=62.20 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..+...+..+.+.|++++|+..|+++++.++..... ......+.+..+|..+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch------hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445678899999999999999999999876542110 00000001123677778888888888888888888777
Q ss_pred C-------CCccCHHhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 159 H-------NLMPHLHAC----TVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 159 ~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
. ++. +..+| .....++...|++++|+..|++..+.
T Consensus 86 l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 86 YFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5 443 45566 66667777777777777777766553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=63.91 Aligned_cols=94 Identities=12% Similarity=-0.040 Sum_probs=76.8
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCch----------HHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFK----------SAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
+.+++|+..|+.+.+..|+ +..++..++.++...|+++ +|+..|+++++.+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---------------- 76 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----------------
Confidence 4689999999999999998 8999999999999998765 9999999998876
Q ss_pred CCCCccchHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCCCccCHHhHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLK-----------MTQDGLQVFDQMRVHNLMPHLHACTVL 171 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l 171 (591)
|....++..+..+|...| ++++|++.|+++++.++ +...|...
T Consensus 77 --P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P--~~~~y~~a 130 (158)
T 1zu2_A 77 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTHYLKS 130 (158)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred --cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 456677888999998875 88999999999888754 43444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=58.35 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 422 KEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYA 497 (591)
Q Consensus 422 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 497 (591)
+++++|...|++..+.| .|... +...|...+..+.|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777777665 23332 5555666666777777777777664 56667777777766 6777777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCC
Q 048533 498 QRLFNLMQGNGILGDSVIYTSLAYAYWR----AGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 498 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 544 (591)
.++|++..+.| ++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777764 56666677777777 6777777777777777763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=61.53 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=73.2
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhc
Q 048533 44 HKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIH 123 (591)
Q Consensus 44 ~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (591)
...++..+...|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++....+.......
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------- 76 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI------- 76 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-------
Confidence 345566777789999999999999998887 7889999999999999999999999999986543211100
Q ss_pred CCCCCccchHHHHHHHHHhcCChHHHHHHHHH
Q 048533 124 DDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQ 155 (591)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 155 (591)
...++..+..++...|+.+.|+..+++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 -----RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp -----HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred -----HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 023456667777777777776665544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00011 Score=53.72 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+...|++++|+..++++.... +.+..++..++.+|.+.|++++|+..|++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555666777777777777777777766543 2234455666666777777777777777766
Q ss_pred hCCCccCHHhHHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLA 176 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~ 176 (591)
+.++. +..++..+..++.
T Consensus 71 ~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 71 ELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHCTT-CHHHHHHHHHHHH
T ss_pred hcCCC-CHHHHHHHHHHHH
Confidence 65443 4455555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=53.28 Aligned_cols=82 Identities=17% Similarity=0.043 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+...+..++..|...|++++|+..|++..+.++. +..++..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4456677778888888888888888888876544 6677778888888888888888888888776543 4555555555
Q ss_pred HHHc
Q 048533 209 ACCK 212 (591)
Q Consensus 209 ~~~~ 212 (591)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.1e-05 Score=56.94 Aligned_cols=89 Identities=10% Similarity=-0.051 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
...+..++..+...|++++|+..|+++...+ |.+..++..++.+|.+.|++++|++.+++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------------------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4556667777777777777777777776643 2334556666667777777777777777776
Q ss_pred hCCCccC------HHhHHHHHHHHHhcCChhHHH
Q 048533 158 VHNLMPH------LHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 158 ~~~~~~~------~~~~~~ll~~~~~~~~~~~a~ 185 (591)
+..+. + ...+..+..++...|+++.|.
T Consensus 66 ~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 66 RYTST-AEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp TSCSS-TTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HhCCC-ccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 65433 2 334444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=9.8e-05 Score=55.35 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..++..++.++.+.|++++|+..|+++.+.+ |.+..++..++.+|...|++++|++.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD------------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777788888888888888888888877754 334556777777888888888888888777
Q ss_pred hhC
Q 048533 157 RVH 159 (591)
Q Consensus 157 ~~~ 159 (591)
++.
T Consensus 68 l~l 70 (100)
T 3ma5_A 68 IEV 70 (100)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=52.99 Aligned_cols=111 Identities=14% Similarity=-0.016 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 048533 387 GDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEEAL 462 (591)
Q Consensus 387 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 462 (591)
++.++|...|++..+.+ .++.. +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566677777666665 22222 5555556666666777777776653 45566666666666 6677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 048533 463 LKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNG 508 (591)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 508 (591)
.++|++..+.| ++..+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777664 56666777777776 677777777777777765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00044 Score=53.24 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 462 LLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|+..++++.+..+. +...+..+...|...|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666655433 56666677777777777777777777766642 22456666677777777777777777777665
Q ss_pred C
Q 048533 542 R 542 (591)
Q Consensus 542 ~ 542 (591)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00049 Score=67.98 Aligned_cols=125 Identities=6% Similarity=-0.143 Sum_probs=76.1
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 048533 418 FCKAKEMDIAKELLFGMLDA---GFSPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSR-----GLC-V-DVSVYRA 483 (591)
Q Consensus 418 ~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~ 483 (591)
+...|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..+++++++. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666665531 11121 345666677777777777777777666532 211 1 2346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCC-cC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQG-----NGIL-GD-SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
|...|...|++++|..++++..+ .|.. |+ ..+...+..++...|.+++|..+|.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888777777654 2321 22 244556667777778888888888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=58.89 Aligned_cols=101 Identities=9% Similarity=-0.106 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHH
Q 048533 456 KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK----------VDYAQRLFNLMQGNGILG-DSVIYTSLAYAYW 524 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 524 (591)
.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++. .| +...|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 34455666666666655433 55555555555555544 34666666666664 23 3456666666666
Q ss_pred HcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc
Q 048533 525 RAG-----------EPKACSDILDDMYRRRLMITLKIYRSFSASYAKD 561 (591)
Q Consensus 525 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (591)
..| ++++|++.|+++++. .|+...|..-+....+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 553 677777777777774 35555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00038 Score=67.50 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=72.1
Q ss_pred CCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 53 CCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
..|++++|+..++.+++. .|+.++...++.+++.+|..+|++++|..++++++.-. . ..++.+.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--------~--~~lG~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY--------S--KHYPVYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------H--HHSCSSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------H--HHcCCCCh
Confidence 458899999999998763 44444456778899999999999999999999987520 0 01112334
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
+....++.|+..|..+|++++|+.+|+++++
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4445677788889999999999998888765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=53.23 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=57.9
Q ss_pred CChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 048533 38 LTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR 107 (591)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 107 (591)
|....+...++.++...|++++|+..|+.+++..|+ +..++..++.++...|++++|+..|++....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444556667778888889999999999999999887 7789999999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=54.10 Aligned_cols=54 Identities=9% Similarity=-0.108 Sum_probs=42.6
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQ-SHWTMIHILTKNKHFKSAQNMLEKIALRDF 109 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 109 (591)
..|++++|+..|+.+++..|. +.. ++..++.++...|++++|+..|+++...++
T Consensus 12 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQTEPV---GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHTCHHHHHHHHHHHHHHCSS---THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 347888888888888887776 667 778888888888888888888888877654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=63.55 Aligned_cols=105 Identities=7% Similarity=-0.181 Sum_probs=74.7
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhh-----CCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESA-----VPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN 117 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~-----~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 117 (591)
+...+..++. .|++++|+..++.+++. .|+.+....++..++.+|..+|++++|+.++++++... .
T Consensus 290 ll~~ie~~~~-~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--------~ 360 (429)
T 3qwp_A 290 SLKKIEELKA-HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--------R 360 (429)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--------H
Confidence 3344455543 48999999999999764 23333346778899999999999999999999887521 0
Q ss_pred HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 118 ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..++...|.....++.|+..|..+|++++|+.+++++.+
T Consensus 361 --~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 361 --IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp --HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 011122333445677788889999999999998888765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0032 Score=50.09 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC---CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK---HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
...+.+.|.......| .+..+.+..+-+|.+.+ ++++++.+|+.+.+.+. |..+.+.+
T Consensus 14 l~~~~~~y~~e~~~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~----------------p~~~rd~l 74 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS----------------KEEQRDYV 74 (152)
T ss_dssp HHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----------------ccchHHHH
Confidence 3445566666555444 38999999999999998 67799999999888541 11345788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..++.+|.+.|++++|++.++.+++..|.
T Consensus 75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999998654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0029 Score=46.20 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 56 IPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
..++|...|+.+++..|+ +..+...++..+.+.|++++|+..++++...++.
T Consensus 24 ~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 378999999999999988 9999999999999999999999999999987654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0051 Score=57.18 Aligned_cols=130 Identities=6% Similarity=-0.065 Sum_probs=80.7
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH----cCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILT----KNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
.+..+|+.+|+.+++..|+ ...++..++.++. ..+.......-++... .+. ......+.++
T Consensus 213 ~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~-----------~a~-~a~~~~~~~a 277 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPE---FTYARAEKALVDIVRHSQHPLDEKQLAALNTEI-----------DNI-VTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-----------HHH-HTCGGGTTCH
T ss_pred HHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH-----------HHH-HhcccCCcCH
Confidence 3458999999999999998 5666655444443 1111111111111110 010 1111224556
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLY 203 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (591)
.++..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.|++....++ ...+|
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P--~~~t~ 346 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP--GANTL 346 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--SHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcChH
Confidence 666666666777788888888888888876 5777777777888888888888888888887643 44444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.014 Score=54.32 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=50.0
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHH
Q 048533 232 RADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYT 307 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 307 (591)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+.....|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3455566666666666677777777777777663 5666666666777777777777777777766666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0061 Score=44.45 Aligned_cols=67 Identities=12% Similarity=-0.075 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHcCCC---chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKH---FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVF 153 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 153 (591)
+...+..++.++...+. .++|..+++++.+.+ |.+...+..++..+.+.|++++|+..|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------------------p~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------------------PYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------------------cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66777777777654443 677888888877755 445556666777777888888888888
Q ss_pred HHHhhCCC
Q 048533 154 DQMRVHNL 161 (591)
Q Consensus 154 ~~~~~~~~ 161 (591)
+++++.++
T Consensus 67 ~~~l~~~p 74 (93)
T 3bee_A 67 VLLLDSND 74 (93)
T ss_dssp HHHHTCCC
T ss_pred HHHHhhCC
Confidence 88777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0048 Score=45.60 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc-hHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH-VLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..+..+.+.|++++|+..++++...+ +.+.. ++..++.+|...|++++|++.|+++++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 45667777788888888888877654 33344 666777778888888888888888877655
Q ss_pred c
Q 048533 162 M 162 (591)
Q Consensus 162 ~ 162 (591)
.
T Consensus 67 ~ 67 (99)
T 2kc7_A 67 D 67 (99)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.015 Score=46.26 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChhHHH
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE---KVDYAQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPKACS 533 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 533 (591)
...+.+-|.+..+.+. ++..+...+..++++++ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555666555554 57777777777788777 5567888888777753 23 2455566777778888888888
Q ss_pred HHHHHHHHCC
Q 048533 534 DILDDMYRRR 543 (591)
Q Consensus 534 ~~~~~~~~~~ 543 (591)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888853
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0036 Score=60.71 Aligned_cols=86 Identities=8% Similarity=-0.022 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCcCH-HHHHHHHH
Q 048533 456 KNNEEALLKLLDEFVSR---GLCVD----VSVYRALIRRFCKKEKVDYAQRLFNLMQG-----NG-ILGDS-VIYTSLAY 521 (591)
Q Consensus 456 ~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~~-~~~~~l~~ 521 (591)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+ .| -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777666542 11222 35677888888888888888888887764 22 12333 67888899
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 048533 522 AYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|..+|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.007 Score=58.76 Aligned_cols=90 Identities=10% Similarity=-0.088 Sum_probs=63.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCcCH-HHHH
Q 048533 452 GYCNKNNEEALLKLLDEFVSRG---LCVD----VSVYRALIRRFCKKEKVDYAQRLFNLMQG-----NG-ILGDS-VIYT 517 (591)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~~-~~~~ 517 (591)
.+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|...|++++|..+++++.+ .| -.|+. .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777776431 1222 45677888888888888888888887764 12 22333 6778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 048533 518 SLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
.|...|...|++++|..+++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 899999999999999999998876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.1 Score=46.40 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcc-----CChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhc-CChhHH
Q 048533 182 DMVWKVYKKMVQLGVVA-NIHLYNVLIHACCKS-----SDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKK-GMHYEA 254 (591)
Q Consensus 182 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a 254 (591)
..|...+++..+.++.- +...|..+...|.+. |+.++|.+.|++.+..+..-+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34445555555432210 123445555555552 55555555555555543211244444555555442 555555
Q ss_pred HHHHHHHHHCCCC
Q 048533 255 LAVQDRMEREGIS 267 (591)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (591)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 5555555554433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.075 Score=41.63 Aligned_cols=118 Identities=9% Similarity=0.012 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHH-HHHHhcCChHH
Q 048533 76 HSLQSHWTMIHILTKNKHF------KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLV-IFYANLKMTQD 148 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 148 (591)
.+.++++..+..+-+.|+. ++.+++|+++...-++.....- ...++.|+- ..+...+++++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w------------rrYI~LWIrYA~~~ei~D~d~ 78 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN------------ESFARIQVRFAELKAIQEPDD 78 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC------------HHHHHHHHHHHHHHHHHCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH------------HHHHHHHHHHHHHHHhcCHHH
Confidence 3788888888888888888 7888888888775433211100 111222211 12344588999
Q ss_pred HHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 149 GLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLI 207 (591)
Q Consensus 149 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 207 (591)
|.++|+.+++.+-+ -...|......-.++|+...|.+++......+..| ...+...+
T Consensus 79 aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 79 ARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 99999998776333 36677777788888999999999999988887774 33444333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.48 E-value=6.3e-06 Score=77.72 Aligned_cols=214 Identities=12% Similarity=0.014 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
.+.+|..++.++.+.|+..+|++.|-+ ..++..|..++.+..+.|.+++-++.+...
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-----------------------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------------------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-----------------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-----------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 566778899999999999999877622 223345666777778889999999988777
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC------
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD------ 230 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 230 (591)
++..- +...=+.|+-+|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+..-.
T Consensus 110 Rk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 110 RKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp STTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 76533 33445788899999888765443332 3566666677788888888887777776553210
Q ss_pred --------------CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 231 --------------VRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 231 --------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
-..++.||..+-.+|...+.+.-|.-.--.++-. || -...++..|-..|.+++-+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1235667888888888888777765554444322 11 1223566677788888888888877
Q ss_pred hcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048533 297 KGA-TPNHVTYTTLIDGYCRANDLEEALRLREV 328 (591)
Q Consensus 297 ~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 328 (591)
.+. ....-.|+-|.-.|++- ++++..+.++.
T Consensus 256 lglErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred hCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 763 34566677777666654 45555544443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.38 E-value=4.4e-05 Score=72.13 Aligned_cols=411 Identities=10% Similarity=0.100 Sum_probs=230.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 45 KVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 45 ~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
..|+......+...+|++.|-++. ++..|..++.+..+.|++++-+..+.-+++.
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~--------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----------------- 112 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSGNWEELVKYLQMARKK----------------- 112 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS--------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHccCchHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 345666666678888888876542 3334667888999999999999998776653
Q ss_pred CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC---------
Q 048533 125 DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG--------- 195 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 195 (591)
...+.+=+.|+-+|++.++..+-.+++. .||..-...+..-|...|.++.|.-+|..+....
T Consensus 113 --~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 113 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp --CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred --hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 2233445556667777777655333321 2454455566666666666666666655443211
Q ss_pred -----------CCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 196 -----------VVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 196 -----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
-..+..||..+-.+|...+++.-|.-.--.++-. +.-...++..|-..|.+++.+.+++.-...
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 1236788999999999999998887665555432 223345677788999999999999887632
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--CCC-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 048533 265 GISPDIVTYNSLIHGFCREGRMREARRLFRDIKG--ATP-------NHVTYTTLIDGYCRANDLEEALRLREVMAAK--- 332 (591)
Q Consensus 265 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 332 (591)
-......|+.|.-.|++- ++++..+.++..-. .-| ....|.-++-.|..-.++|.|... |..+
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~ 333 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTD 333 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChh
Confidence 234677888888888765 45555555544322 111 345678888888888888876532 1111
Q ss_pred ----C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048533 333 ----G-------VYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLE 401 (591)
Q Consensus 333 ----~-------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 401 (591)
+ -..+...|...|..|... .+...+-|+.++...=|..++.++|++.-.
T Consensus 334 Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e--------------------~P~lL~DLL~vL~prlDh~RvV~~~~k~~~ 393 (624)
T 3lvg_A 334 AWKEGQFKDIITKVANVELYYRAIQFYLEF--------------------KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ 393 (624)
T ss_dssp HCCGGGGTTTGGGCSCSHHHHHHHHHHTTS--------------------CCTTSHHHHHHHCTTCCSTTTHHHHHTTTC
T ss_pred hccHHHHHHHHHHcchHHHHHHHHHHHHHh--------------------ChHHHHHHHHhccccCChHHHHHHHHhcCC
Confidence 0 012334444444443322 111233344443333334444333332210
Q ss_pred C----------CCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 402 A----------GLMLDQFTYKALIHGFCKAKEMDIAKE------------LLFGMLDAGFSPSYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 402 ~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (591)
. ....+...=.++-..|....+++.-.. +-.++.++ +-...-..-...|.+.+++
T Consensus 394 LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw 470 (624)
T 3lvg_A 394 LPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRW 470 (624)
T ss_dssp GGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccH
Confidence 0 011123333344445556665554332 22222221 1222223334456667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSD 534 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 534 (591)
++++.+.++ ...|.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++-+.+
T Consensus 471 ~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 471 KQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 666554321 1123334455566677777777777776644 45556666666655555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.021 Score=42.72 Aligned_cols=75 Identities=7% Similarity=-0.012 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+..-.+.++..+.+.|++..|...|+.+.+....... .......++..++.+|.+.|++++|+..++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4555678999999999999999999998774211100 11345577888999999999999999999999
Q ss_pred hhCCCc
Q 048533 157 RVHNLM 162 (591)
Q Consensus 157 ~~~~~~ 162 (591)
.+..+.
T Consensus 73 l~l~P~ 78 (104)
T 2v5f_A 73 LELDPE 78 (104)
T ss_dssp HHHCTT
T ss_pred HhcCCC
Confidence 887554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.032 Score=49.68 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccc
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN-----KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSH 131 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (591)
...|...++++++..|+ ..+..+|..++..|.+. |+.++|.+.|++.++.++ ..+..
T Consensus 179 l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP-----------------~~~id 240 (301)
T 3u64_A 179 VHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS-----------------AHDPD 240 (301)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC-----------------TTCSH
T ss_pred HHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-----------------CCCch
Confidence 46788888999988886 22356888899999884 999999999999988763 22356
Q ss_pred hHHHHHHHHHhc-CChHHHHHHHHHHhhCCCc--cCHHhHHHH
Q 048533 132 VLSWLVIFYANL-KMTQDGLQVFDQMRVHNLM--PHLHACTVL 171 (591)
Q Consensus 132 ~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~~~~~~~~l 171 (591)
+....+..+++. |+.++|.+.+++.+..++. |+....+.+
T Consensus 241 ~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 241 HHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 677777888874 8899999999999998777 665444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.41 Score=51.02 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048533 407 DQFTYKALIHGFCKAKEMDIAKELLFGM 434 (591)
Q Consensus 407 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 434 (591)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444444555555554444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.073 Score=39.63 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG------ILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..-+..++..+...|++..|...++.+.+.- -.+...++..+..++.+.|++++|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34445566666666677777777766665420 12234666777777777777777777777777643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.052 Score=41.48 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchH---HHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchH
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKS---AQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVL 133 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (591)
...+.+.|.......+ .+..+.+.++-++.+.++..+ ++.+++.+.+.+. +..+.+.+
T Consensus 17 l~~~~~~y~~e~~~~~---~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~----------------p~~~Rd~l 77 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----------------KEEQRDYV 77 (126)
T ss_dssp HHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhccCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC----------------cchHHHHH
Confidence 3455566665554433 478999999999999988877 8899988876431 12345778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 134 SWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 134 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
..++.++.+.|++++|++.++.+++..+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.21 Score=53.24 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=101.9
Q ss_pred HhcCCHHHHHH-HHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048533 349 CKEGRIRDANR-LLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIA 427 (591)
Q Consensus 349 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 427 (591)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+ +.. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHH
Confidence 45677777766 44111 112233667777778888888876642 211 112345678999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 428 KELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9886543 5678999999999999999999999998753 344555566677777777766666654
Q ss_pred CCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 508 GILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 508 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
|- ++....+|.+.|++++|.+++.++-+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 31 33444556667777777777665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.44 Score=36.49 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
+...+...+......|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4566777788888999999999999987553 5788999999999999999999999999999999975
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.75 Score=37.57 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 048533 138 IFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVD 217 (591)
Q Consensus 138 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 217 (591)
..-.+.|+++.|.++.+.+ .+...|..|.......|+++.|.+.|..... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3456678888888887765 2667888888888888888888888887642 344555666678777
Q ss_pred hHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 218 KVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
...++-+....+| -++....++.-.|+++++.++|.+.-+ .|.. .......|..+.|.++...+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 7776666555543 355666667777888888888754322 2211 11122356677777777665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.8 Score=50.75 Aligned_cols=155 Identities=8% Similarity=-0.014 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHc----CCCC-chHHHHHHHhhcCCCCCc
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALR----DFLS-TPSVLNALVKIHDDPDGN 129 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~ 129 (591)
+.++.|.++..| .|. +....+.++.++...|++++|...|+++... +... ...-...+..........
T Consensus 826 ~~~~~~~~l~~~----~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 898 (1139)
T 4fhn_B 826 KQYNACMQLIGW----LNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLL 898 (1139)
T ss_dssp SCTTHHHHHHHH----SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSS
T ss_pred hhHHHHHHHhhh----ccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccH
Confidence 667777777666 343 5666678999999999999999999886431 1111 111122222222223334
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH----LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
...|..++..+-+.+.++.++++-..+++.....+ ...|..+.+.+...|++++|...+-.+..... -......
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 45677788888888999988888877766432212 12577788888888888888888877765433 3556666
Q ss_pred HHHHHHccCChhh
Q 048533 206 LIHACCKSSDVDK 218 (591)
Q Consensus 206 ll~~~~~~g~~~~ 218 (591)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7776776665443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.25 Score=37.68 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCc--CHHHHHHHHHHHHHcCChhHH
Q 048533 458 NEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDY---AQRLFNLMQGNGILG--DSVIYTSLAYAYWRAGEPKAC 532 (591)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 532 (591)
....+.+-+......|. |+..+-..+..++.++.+... ++.+++.+...+ .| .-...-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544443 566666677777777766555 777777776653 22 224455566677888888888
Q ss_pred HHHHHHHHHCC
Q 048533 533 SDILDDMYRRR 543 (591)
Q Consensus 533 ~~~~~~~~~~~ 543 (591)
.++++.+++..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888888754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.2 Score=39.34 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048533 491 KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 491 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (591)
.+++++|+++|+.+++..-.. ..+|.....--.++|+...|.+++.+....+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776532222 5666666666677777777777777777776553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.85 E-value=3.1 Score=40.37 Aligned_cols=49 Identities=6% Similarity=0.074 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048533 249 GMHYEALAVQDRMERE-----GISPDIVTYNSLIHGFCREGRMREARRLFRDIK 297 (591)
Q Consensus 249 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 297 (591)
|+++.|++.+..+.+. +..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566666655544431 223344555666666666666666655555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=1.4 Score=36.04 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALL 463 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (591)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554433 1445555555555555555555555554431 223333344445555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 464 KLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFN 502 (591)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 502 (591)
++-+.....|- ++.....+...|+++++.+++.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443321 2333334444555555555553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.78 E-value=5 Score=42.46 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 048533 383 YCKIGDTASAMKVKNRMLEAGLMLDQFTYKALI--HGFCKAKEMDIAKELLFGMLDAGFSPSYCSY--SWLVDGYCNKNN 458 (591)
Q Consensus 383 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 458 (591)
+...|+.+....++..+.+.. +......+. -++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 445566666666666555431 223332233 33445677777777777766531 1221111 123445667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCCh-hHHHHHHH
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEP-KACSDILD 537 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 537 (591)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 776666777777642 1122222222223334566666666666665542 34443333444444444443 46667777
Q ss_pred HHHH
Q 048533 538 DMYR 541 (591)
Q Consensus 538 ~~~~ 541 (591)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 7754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=2.3 Score=41.29 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 284 GRMREARRLFRDIKG-------ATPNHVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 284 g~~~~A~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
|+++.|++.+..+.+ ..........++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567777776655542 1223445666777777788887777766655543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.38 E-value=1.8 Score=44.74 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=80.5
Q ss_pred CCChHHHHHHHHhhhcCCCC-hhHHHHHHHHHhhhCCCCCCCHHHHHH--HHHHHHcCC-CchHHHHHHHHHHHc-----
Q 048533 37 SLTSTAIHKVLLNLYNCCHI-PSLSCAFFKWAESAVPNYKHSLQSHWT--MIHILTKNK-HFKSAQNMLEKIALR----- 107 (591)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~-~~~A~~~f~~~~~~~p~~~~~~~~~~~--l~~~~~~~g-~~~~A~~~~~~~~~~----- 107 (591)
...++++...|..+..-.++ .+.|+.+|+...+..|. ..++.. ++..+.+.+ +--+|++++.+..+.
T Consensus 244 t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~----~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~ 319 (754)
T 4gns_B 244 TIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPI----HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLL 319 (754)
T ss_dssp CSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCc----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33455555555555443444 57899999998887764 333332 333333333 233466665554431
Q ss_pred --CCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHH
Q 048533 108 --DFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVW 185 (591)
Q Consensus 108 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 185 (591)
-...+..... +. +....++..-+..+...|+++-|+++-.+.....+. +-.+|..|..+|...|+++.|+
T Consensus 320 ~~l~~~~~~~~~-~~------~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 320 NDLPPRDADSAR-LM------NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HTCSSCCHHHHH-HH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhccccccccc-cc------CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHH
Confidence 0000000000 00 001123333455667778888888888887776544 6778888888888888888888
Q ss_pred HHHHHHH
Q 048533 186 KVYKKMV 192 (591)
Q Consensus 186 ~~~~~~~ 192 (591)
-.++.+.
T Consensus 392 LtLNScP 398 (754)
T 4gns_B 392 FAINSMP 398 (754)
T ss_dssp HHHHHSC
T ss_pred HHHhcCC
Confidence 7777764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=1.4 Score=33.77 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=83.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.-.|..++..++..+.... .+..-+|.++--....-+.+-..+.++.+-.. -|. ..+|+.......
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG----------GGCSCTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-cCc----------HhhhcHHHHHHH
Confidence 3457777777777777653 35566666666666666666666666666431 111 124444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLM 405 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (591)
+-.+-. +.......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 433221 3344555666666777777777777775442 3556666777777777777777777777777666643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=2.5 Score=40.14 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-----LGVVANIHLYNV 205 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 205 (591)
...++..+...|++.+|+..+..+...++- +...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445667788899999999999998887665 788899999999999999999999988754 588887766443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.53 E-value=0.62 Score=33.47 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
+.=+.++-++.+...++.|++.+..+.+++|.+.+++..|.++++-+..+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344556666666666677777777777777777777777777777666652 122334554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.21 E-value=1.6 Score=33.47 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 473 GLCVDVSVYRALIRRFCKKEKV---DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 473 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
+..|++.+--.+..++.++.+. .+++.+++.+.+.+..-.-..+-.+.-++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4456777777777777777654 4677777777765421123566677778888888888888888888854
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=92.17 E-value=1.6 Score=33.74 Aligned_cols=107 Identities=14% Similarity=0.275 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+.+.......+-+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456777788888888888888887521111 12334455555555432 456778888888877665544433333333
Q ss_pred hcch----------hHHHHHHHHHHhcCCCChHHHHHHHh
Q 048533 559 AKDN----------EILDLFWSHVVDRGLMSKHIFKEMQL 588 (591)
Q Consensus 559 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (591)
.... +....|..+++..|.++.++.+.+..
T Consensus 89 ~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~ 128 (129)
T 2nsz_A 89 NEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 128 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred hhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCC
Confidence 3322 33346888899999999998887654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.13 E-value=6.7 Score=35.57 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=47.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccC
Q 048533 85 IHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPH 164 (591)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 164 (591)
+..-...|++=+|.+.++.+..+ |.+++++++|++++..-.
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~R--------------------------------y~~~~~~~eAidlL~~ga------- 60 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANR--------------------------------YVRSKSYEHAIELISQGA------- 60 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHhhccChHHHHHHHHHHHHH--------------------------------HHHhcCHHHHHHHHHHHH-------
Confidence 34445557777777777666543 777788888887764432
Q ss_pred HHhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 048533 165 LHACTVLLNSLAKDRLTDM----VWKVYKKMVQLGVVANIHLYNVLIHACCKS 213 (591)
Q Consensus 165 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 213 (591)
..+.+.|+... |.-+.+-..+.+.+++......++..+...
T Consensus 61 --------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 61 --------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred --------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 22333444433 333445555566677766666666655543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=3.4 Score=32.11 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 475 CVDVSVYRALIRRFCKKEKV---DYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 475 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
.|+..+-..+.+++.++.+. .+++.+++.+...+..-.-...-.+.-++.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56777777777777777654 4677777777764322123455567778888888888888888888854
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.50 E-value=4 Score=31.74 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHcCCCch---HHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHH
Q 048533 76 HSLQSHWTMIHILTKNKHFK---SAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQV 152 (591)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 152 (591)
.+..+.+..+-++.++.+.. +++.+++.+.+.+ +....+.+..++.++.+.|++.+|++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-----------------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----------------ESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-----------------CSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------ccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 47888889998999987655 5788888877643 235667889999999999999999999
Q ss_pred HHHHhhCCCc
Q 048533 153 FDQMRVHNLM 162 (591)
Q Consensus 153 ~~~~~~~~~~ 162 (591)
.+.+++..+.
T Consensus 100 ~d~lL~~eP~ 109 (144)
T 1y8m_A 100 VDTLFEHERN 109 (144)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHhcCCC
Confidence 9999998654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=1.6 Score=41.48 Aligned_cols=71 Identities=7% Similarity=-0.066 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYR-----RRLMITLKIYR 552 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 552 (591)
...++..+...|+++++...+..+... -+.+...|..++.++.+.|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566667777777777777777664 233556777777888888888888777777654 27777766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.56 E-value=11 Score=41.88 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDI----VTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGY 313 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 313 (591)
|..++..+.+.|.++.+.+.-...++....-+. ..|..+...+...|++++|...+-.+.....-......++..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 556666676777777776666555443211111 2456667777777777777777766654333344555555555
Q ss_pred HhcC------------CHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 048533 314 CRAN------------DLEEALRLREVMAAK--GVYPGVVTYNSILRKLCKEGRIRD-ANRLLNEMN 365 (591)
Q Consensus 314 ~~~g------------~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 365 (591)
|..| ..++..+++....+. .....+.-|..|-.-+...|++.. |.-+|+.+.
T Consensus 982 ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 982 TKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 5444 344555555432221 111122335555555566666654 444555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.46 E-value=6 Score=40.98 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHHHhhC
Q 048533 82 WTMIHILTKNKH-FKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQMRVH 159 (591)
Q Consensus 82 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 159 (591)
..++..+...|+ ++.|+.+|+++....+.....+...+ +..+.+.+ +--+|++++.+.++.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~-----------------i~~~~~~~~~Ev~av~ll~~~l~~ 314 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAM-----------------ITILDHIETKELDMITILNETLDP 314 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHH-----------------HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHH-----------------HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 356777777777 47799999999887643322211111 11122222 223456666555421
Q ss_pred -------CCccC----------HHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHH
Q 048533 160 -------NLMPH----------LHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKL 222 (591)
Q Consensus 160 -------~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 222 (591)
-...+ ....+.-...|...|+++.|+++-++.....+. +-.+|..|..+|.+.|+++.|+-.
T Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 315 LLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHH
Confidence 11111 112333345667789999999999998886544 677899999999999999999988
Q ss_pred HHHHh
Q 048533 223 LCEME 227 (591)
Q Consensus 223 ~~~~~ 227 (591)
+..++
T Consensus 394 LNScP 398 (754)
T 4gns_B 394 INSMP 398 (754)
T ss_dssp HHHSC
T ss_pred HhcCC
Confidence 88875
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.48 E-value=0.91 Score=36.41 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=62.6
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhh---CCCC-CCC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCchH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESA---VPNY-KHS--LQSHWTMIHILTKNKHFKSAQNMLEKIALRD--FLSTPS 114 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~---~p~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 114 (591)
+..-+..++.+ +.++-|.-+...+... .|+. ++. ..+...++.++...|+|.+|...|+.+++.. ......
T Consensus 23 l~dqik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 23 VIDHVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444443 7788887777775442 2221 000 1345578999999999999999999975521 110000
Q ss_pred HHHHHHhhcC------CCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 115 VLNALVKIHD------DPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 115 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
. .+...... +...+.++-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~-~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 V-RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c-cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 00000000 11122345566777777777777777777765443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.08 E-value=3.5 Score=31.52 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 494 VDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 494 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
.=+.++-++.+...++.|++.+....+++|.+.+|+..|.++++-...+- .+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 34566666677777788888888888888888888888888888877762 2334456655543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.70 E-value=14 Score=33.74 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=46.9
Q ss_pred HHHHHcCCCc---hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 85 IHILTKNKHF---KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 85 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
+......|+| =+|.+.++.+..+ |.+++++++|++++..-.
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~~R--------------------------------y~~~k~y~eAidLL~~GA---- 62 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVAAR--------------------------------YSKQGNWAAAVDILASVS---- 62 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHH--------------------------------HHHTTCHHHHHHHHHHHH----
T ss_pred HHHHHhCCCCccccHHHHHHHHHHHH--------------------------------HHhhcCHHHHHHHHHHHH----
Confidence 3445556777 6777777666543 777788888887654321
Q ss_pred ccCHHhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 162 MPHLHACTVLLNSLAKDRLTDM----VWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
..+.+.|+... +.-+.+-..+.+++++......++..+....
T Consensus 63 -----------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 63 -----------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp -----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred -----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 22333344333 3333344455666666666666665555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.50 E-value=3 Score=30.04 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGN 507 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 507 (591)
.-+..+-++.+...++.|++.+..+.+++|.+.+++..|.++++-+..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666666666666666666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.07 E-value=4.8 Score=30.88 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=41.0
Q ss_pred CcCcccHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 048533 232 RADLFTYNTLIALYCKKGMH---YEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN 302 (591)
Q Consensus 232 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 302 (591)
.|+..+-.....++++..+. ..++.+++.+.+.+..-....+..+.-++.+.|++++|.++.+.+....|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34555555555555555443 345666666665542223445555666677777777777777777666665
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.04 E-value=1.3 Score=42.90 Aligned_cols=102 Identities=8% Similarity=-0.133 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
..++..++..+.+.|+++.|.+.|.++......+ ....+++...++.+...+++..+...+.++.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567789999999999999999999988753322 3344677788889999999999999998876
Q ss_pred hC---CCccCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 158 VH---NLMPHLHA--CTVLLNSLAKDRLTDMVWKVYKKMVQL 194 (591)
Q Consensus 158 ~~---~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~ 194 (591)
.. +..|+... ...-+..+...+++..|-..|-+....
T Consensus 196 ~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 196 SMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 43 32233221 111222334578899888888776543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.76 E-value=4.1 Score=32.66 Aligned_cols=64 Identities=13% Similarity=-0.045 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCC-CccC-------HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHN-LMPH-------LHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
...+..-+......+.++.|+-+.+.+.... ..|+ ..++..+..++...|++.+|...|++.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445555666778889999988887765431 1222 23667778888899999999999988654
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.61 E-value=8.4 Score=35.72 Aligned_cols=107 Identities=14% Similarity=0.276 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
....++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+.+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577888899999999999999998632111 12344555556655443 45688899999988887665555555555
Q ss_pred hhcch----------hHHHHHHHHHHhcCCCChHHHHHHH
Q 048533 558 YAKDN----------EILDLFWSHVVDRGLMSKHIFKEMQ 587 (591)
Q Consensus 558 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
+.... .+...|..+++..|.++..+.+.+.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~p 337 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCP 337 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTCC
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCc
Confidence 54433 3334688888999999998877664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.29 E-value=38 Score=36.04 Aligned_cols=267 Identities=11% Similarity=0.044 Sum_probs=141.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhc-CC--------CChhhHHHHHH
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGISPDIV--TYNSLIHGFCREGRMREARRLFRDIKG-AT--------PNHVTYTTLID 311 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~~li~ 311 (591)
-+....|+.++++.+++...-.+-..+.. .=..+.-+....|...++..++..... .. +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888887765421112322 223334445556665667777766543 11 11111222222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHH--HHH
Q 048533 312 GY--CRANDLEEALRLREVMAAKGVYPGVVT--YN--SILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLI--NAY 383 (591)
Q Consensus 312 ~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~ 383 (591)
++ ...++ +++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+.. +......+. -++
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 33 33344 45555555555432 2221 12 22223445677777778887776642 333333333 344
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 384 CKIGDTASAMKVKNRMLEAGLMLDQF-TYK---ALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNE 459 (591)
Q Consensus 384 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (591)
...|+.+.+..+.+.+... .++. -|. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.
T Consensus 535 l~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred hhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 4678998888888888764 2322 232 34456778899888888999888642 12222222233344456777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV-DYAQRLFNLMQGNGILGDSVIYTSLAYAYW 524 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 524 (591)
+.+.++++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+-++.
T Consensus 611 e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 611 TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 77777777666543 33333333333333444443 577888888874 335444433333443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=31 Score=34.87 Aligned_cols=315 Identities=9% Similarity=0.026 Sum_probs=157.0
Q ss_pred HHHHHHHHhccccchhcC--CCCCCCCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 048533 14 IKTISAIMLKGHWAKLLN--PNIASSLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN 91 (591)
Q Consensus 14 ~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~ 91 (591)
...+...+.++.|..... +.+...|-..++..-..........+.+...++. .+|+.|........-...+.+.
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~----~~~~~p~~~~Lr~~~l~~l~~~ 85 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVR----ANPTLPPARTLQSRFVNELARR 85 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHH----HCCCChhHHHHHHHHHHHHHhC
Confidence 444555677777764333 2333333344443322222221224454444433 3776444444444556667777
Q ss_pred CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHH
Q 048533 92 KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVL 171 (591)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 171 (591)
+++......+. .+|.+...-.....+....|+..+|......+-..+.. ....+..+
T Consensus 86 ~~w~~~l~~~~----------------------~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l 142 (618)
T 1qsa_A 86 EDWRGLLAFSP----------------------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKL 142 (618)
T ss_dssp TCHHHHHHHCC----------------------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHH
T ss_pred CCHHHHHHhcc----------------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHH
Confidence 77666555432 22444455566677788888887787777776655533 45577888
Q ss_pred HHHHHhcCChhH--HHHHHHHHHHCCCC-----------CCHH-HHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcc-
Q 048533 172 LNSLAKDRLTDM--VWKVYKKMVQLGVV-----------ANIH-LYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLF- 236 (591)
Q Consensus 172 l~~~~~~~~~~~--a~~~~~~~~~~~~~-----------~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 236 (591)
+..+.+.|.... ..+=++.+...|-. ++.. ....++... .+...+....... .++..
T Consensus 143 ~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-----~~~~~~ 214 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-----GATDFT 214 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-----CCCHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-----CCChhh
Confidence 888887665433 33333333333211 1110 011111111 1122222211110 11111
Q ss_pred --cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHH
Q 048533 237 --TYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYN----SLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLI 310 (591)
Q Consensus 237 --~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 310 (591)
.+...+.-+. ..+.+.|...+....+.. ..+..... .+.......+...++...+........+.....-.+
T Consensus 215 ~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 215 RQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHH
Confidence 1111222222 336788888887776532 22332222 222223333424455555555443344444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048533 311 DGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNE 366 (591)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (591)
....+.|+++.|...|+.|..... .......-+..++...|+.++|..+|..+..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555567888888888887765321 2344455566677778888888888887764
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=84.84 E-value=6.3 Score=31.54 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhccccchhcC--CCCCC-CCChHHHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 048533 12 KFIKTISAIMLKGHWAKLLN--PNIAS-SLTSTAIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHIL 88 (591)
Q Consensus 12 ~~~~~i~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~ 88 (591)
++.-.||-+++=..+.+..= ..+.+ .+.-..+-.+..-+ .|.+..|+-.+.. . + +..+..--.-.|
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~Lyy---ngEY~R~Lf~L~~----l-N---T~Ts~YYk~LCy 72 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPCKPEYRMLMSIVLYL---NGEYTRALFHLHK----L-N---TCTSKYYESLCY 72 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC----CTHHHHHHHHHH---TTCHHHHHHHHHT----C-C---BHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccCChHHHhhhhhhhhh---cchHhHHHHHHHh----c-c---hHHHHHHHHHHH
Confidence 45566777766555443111 11111 22233444443333 3888888777654 2 2 444444445578
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 89 TKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.+..++..|+..++.+....+..++.+-..+--+.-++.+.+-.++.++..+.+.|+-++|+..+..--..
T Consensus 73 ~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 73 KKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 89999999999999999766655543333333444456666667777788888889989988887665443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.53 E-value=11 Score=33.14 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=49.9
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
+.|+++.|+......++..|. +......+++.|+-.|++++|.+-++...+.++.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~---da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 458999999999999999988 8999999999999999999999999998887654
|
| >2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A | Back alignment and structure |
|---|
Probab=83.71 E-value=7 Score=31.06 Aligned_cols=105 Identities=14% Similarity=0.288 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+.+..++..+...|+.+.......+-+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 456677777778888888888777421111 12333444555554322 445677777777777654444433333333
Q ss_pred hcch----------hHHHHHHHHHHhcCCCChHHHHHH
Q 048533 559 AKDN----------EILDLFWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 559 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 586 (591)
.... +....|..+++..|.++.+....+
T Consensus 91 ~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 128 (152)
T 2ion_A 91 NEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 128 (152)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 3322 333467888888898888877665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.67 E-value=12 Score=28.67 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048533 460 EALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
-+..+-++.+...++.|++.+....+++|.+.+++..|.++++-...+ ..+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344555555556666677777777777777777777777777766654 233344555544
|
| >2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A | Back alignment and structure |
|---|
Probab=81.26 E-value=31 Score=31.20 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 048533 480 VYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGE--PKACSDILDDMYRRRLMITLKIYRSFSAS 557 (591)
Q Consensus 480 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 557 (591)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+.|+.+.......+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3567788899999999999999998631111 12334455555555433 45678899999988877555554444444
Q ss_pred hhcch----------hHHHHHHHHHHhcCCCChHHHHHH
Q 048533 558 YAKDN----------EILDLFWSHVVDRGLMSKHIFKEM 586 (591)
Q Consensus 558 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 586 (591)
+.... .+...|..+++..|.++.+..+.+
T Consensus 247 l~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred HHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 44332 333468899999999998877654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.15 E-value=18 Score=34.81 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhC--CCccCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048533 132 VLSWLVIFYANLKMTQDGLQVFDQMRVH--NLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 132 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
+...++..|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455555666666666666666555543 112223444555555555555555555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 591 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.41 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.34 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.22 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.0 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.91 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.26 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.94 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 91.1 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.54 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9e-23 Score=197.80 Aligned_cols=383 Identities=14% Similarity=0.030 Sum_probs=202.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 048533 84 MIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMP 163 (591)
Q Consensus 84 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 163 (591)
++..+.+.|++++|++.++++.+.. |.++.++..++.+|.+.|++++|+..|+++++.++.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~- 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE------------------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL- 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 4555566666666666666666543 233445555666666666666666666666665543
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHH
Q 048533 164 HLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIA 243 (591)
Q Consensus 164 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 243 (591)
+..++..+..++.+.|++++|+..+....+.... +..............+....+........... ............
T Consensus 66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 143 (388)
T d1w3ba_ 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 4556666666666666666666666666554433 33333333333444444444444333333221 122333333344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 048533 244 LYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEAL 323 (591)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 323 (591)
.....+....+...+....... +-+...+..+...+...|++++|...+.+.....|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--------------------- 201 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--------------------- 201 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred cccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc---------------------
Confidence 4444444455554444444332 113344444444445555555555555444432332
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048533 324 RLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAG 403 (591)
Q Consensus 324 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 403 (591)
+...+..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...|+++.+..
T Consensus 202 -------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 267 (388)
T d1w3ba_ 202 -------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp -------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -------------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33344444444444555555555555444432 1234444445555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 404 LMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRA 483 (591)
Q Consensus 404 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (591)
+.+..++..+...+...|++++|...++...... +.+...+..+...+...|++++|++.++++++..+. +..++..
T Consensus 268 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 344 (388)
T d1w3ba_ 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 1234555555556666666666666666555432 344555566666666666666666666666654332 4566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHHcCC
Q 048533 484 LIRRFCKKEKVDYAQRLFNLMQGNGILG-DSVIYTSLAYAYWRAGE 528 (591)
Q Consensus 484 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 528 (591)
+..+|...|++++|...|+++.+. .| +...|..+..+|.+.||
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 666666777777777777766653 33 34566666666666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=8e-23 Score=198.16 Aligned_cols=380 Identities=10% Similarity=-0.022 Sum_probs=277.1
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCC
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDG 128 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (591)
..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..++++.+.+ |.
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------p~ 65 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------------PL 65 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------TT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CC
Confidence 3344569999999999999998887 88999999999999999999999999998865 34
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 129 NSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH 208 (591)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 208 (591)
+..++..++.+|.+.|++++|+..+..+.+.... +..............+....+............. ..........
T Consensus 66 ~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 143 (388)
T d1w3ba_ 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 5567888999999999999999999999987655 5566666666666777777777777666665444 4555555667
Q ss_pred HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048533 209 ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMRE 288 (591)
Q Consensus 209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 288 (591)
.....+....+...+....... +.+...+..+...+...|++++|...+++..+... -+..++..+...+...|++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 221 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH
T ss_pred cccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHH
Confidence 7778888888888888877653 34567788889999999999999999999887632 256788889999999999999
Q ss_pred HHHHHHHhhcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 289 ARRLFRDIKGA-TPNHVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 289 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
|...+...... ..+...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|...++.....
T Consensus 222 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 300 (388)
T d1w3ba_ 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 99999888763 3346667777788888888888888888877653 224556666667777777777777777666554
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYS 447 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (591)
.+.+...+..+...+...|++++|...|++..+..+ -+..++..+..++.+.|++++|...|+++++.. +-+..++.
T Consensus 301 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~ 377 (388)
T d1w3ba_ 301 -CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 377 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred -CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 233555566666666666666666666666555421 234555555555556666666666665555432 12344555
Q ss_pred HHHHHHHhcC
Q 048533 448 WLVDGYCNKN 457 (591)
Q Consensus 448 ~l~~~~~~~g 457 (591)
.+..+|.+.|
T Consensus 378 ~lg~~~~~~~ 387 (388)
T d1w3ba_ 378 NMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 5555555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.1e-14 Score=136.47 Aligned_cols=225 Identities=17% Similarity=0.045 Sum_probs=129.4
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+.+.|++++|+..|+.+++..|. +..++..++.++...|++++|+..|+++.+.+ |
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p 84 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELK------------------P 84 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc------------------c
Confidence 33344569999999999999998887 88999999999999999999999999988765 3
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhH---------------HHHHHHHHhcCChhHHHHHHHHHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHAC---------------TVLLNSLAKDRLTDMVWKVYKKMV 192 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------~~ll~~~~~~~~~~~a~~~~~~~~ 192 (591)
.+...+..++..|...|++++|++.++++....+. ....+ ...+..+...+.+..|.+.|....
T Consensus 85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 45567788888999999999999999998876432 11110 011111222233344444444443
Q ss_pred HCCCC-CCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 048533 193 QLGVV-ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIV 271 (591)
Q Consensus 193 ~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 271 (591)
+..+. .+..++..+...+...|++++|...+++..... +.+..+|..+..++...|++++|.+.|++..+... -+..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHH
Confidence 33221 123334444444444444444444444443332 12233444444444444444444444444443211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 272 TYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 272 ~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
++..+..+|.+.|++++|+..|++.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEA 266 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444444444444444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.6e-13 Score=128.22 Aligned_cols=229 Identities=13% Similarity=0.010 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCK 212 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 212 (591)
....+..+.+.|++++|+..|+++++.++. +..+|..+..++...|+++.|...|.+..+..+. +...+..+...+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 345677899999999999999999999876 7889999999999999999999999999988765 77888889999999
Q ss_pred cCChhhHHHHHHHHhhCCCCcCcccH----------------HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHH
Q 048533 213 SSDVDKVEKLLCEMEFKDVRADLFTY----------------NTLIALYCKKGMHYEALAVQDRMEREGI-SPDIVTYNS 275 (591)
Q Consensus 213 ~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ 275 (591)
.|++++|.+.++...... |+.... ...+..+...+.+.+|.+.+.+..+... .++..++..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999987653 221110 0111122233444555555555444321 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 276 LIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRI 354 (591)
Q Consensus 276 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 354 (591)
+...+...|++++|...|++.....|+ ..+|..+..+|...|++++|.+.|++..+.. +-+..++..+..+|.+.|++
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCH
Confidence 555555556666666666555443332 4445555555555566666655555555432 11344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 048533 355 RDANRLLNEMNE 366 (591)
Q Consensus 355 ~~a~~~~~~~~~ 366 (591)
++|+..|++.++
T Consensus 257 ~~A~~~~~~al~ 268 (323)
T d1fcha_ 257 REAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.5e-11 Score=113.37 Aligned_cols=214 Identities=10% Similarity=0.014 Sum_probs=165.7
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC-chHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 42 AIHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKH-FKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 42 ~~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
.+...++.++.+.+.+++|+..|+.+++.+|+ ...+|+..+.++...|+ +++|+..++++.+.+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~------------ 108 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------------ 108 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH------------
Confidence 34556677777889999999999999999988 88899999999988775 899999999998865
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANI 200 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (591)
|.+..++..++..+.+.|++++|++.++++++.++. +..+|..+...+...|+++.|++.++.+.+.++. +.
T Consensus 109 ------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~ 180 (315)
T d2h6fa1 109 ------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NN 180 (315)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CH
T ss_pred ------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cH
Confidence 456678888889999999999999999999998877 8899999999999999999999999999998765 77
Q ss_pred HHHHHHHHHHHccCC------hhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHH
Q 048533 201 HLYNVLIHACCKSSD------VDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISP-DIVTY 273 (591)
Q Consensus 201 ~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 273 (591)
..|+.+..++.+.+. +++|.+.+.+.+... +.+...|+.+...+.. ...+++.+.++...+....+ +...+
T Consensus 181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 788877776666655 467777777777664 3456667766655443 44567777777666543222 34444
Q ss_pred HHHHHHH
Q 048533 274 NSLIHGF 280 (591)
Q Consensus 274 ~~l~~~~ 280 (591)
..++..|
T Consensus 259 ~~l~~~y 265 (315)
T d2h6fa1 259 AFLVDIY 265 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7.2e-11 Score=108.72 Aligned_cols=214 Identities=9% Similarity=-0.002 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcC-ChHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLK-MTQDGLQVFDQ 155 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 155 (591)
-..++..++.++.+.+++++|+.+++++++.+ |.+..++...+.++...| ++++|+..+++
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln------------------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~ 103 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN------------------AANYTVWHFRRVLLKSLQKDLHEEMNYITA 103 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC------------------CCChHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 35677788889999999999999999999976 455667888888888876 48999999999
Q ss_pred HhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCc
Q 048533 156 MRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADL 235 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 235 (591)
+++.+++ +..+|..+...+.+.|++++|++.++++.+..+. +...|..+...+.+.|++++|.+.++++++.+ +.+.
T Consensus 104 al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~ 180 (315)
T d2h6fa1 104 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN 180 (315)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccH
Confidence 9998877 8899999999999999999999999999998766 78899999999999999999999999998875 4467
Q ss_pred ccHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC---hhhH
Q 048533 236 FTYNTLIALYCKKGM------HYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN---HVTY 306 (591)
Q Consensus 236 ~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ 306 (591)
.+|+.+..++.+.+. +++|++.+.+..+..+ .+...|+.+...+.. ...+++.+.++...+..|+ ...+
T Consensus 181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 788888777776665 4678888888777632 256777766665544 3356677777766554443 3344
Q ss_pred HHHHHHH
Q 048533 307 TTLIDGY 313 (591)
Q Consensus 307 ~~li~~~ 313 (591)
..++..|
T Consensus 259 ~~l~~~y 265 (315)
T d2h6fa1 259 AFLVDIY 265 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.8e-09 Score=100.18 Aligned_cols=277 Identities=10% Similarity=-0.000 Sum_probs=173.7
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHH
Q 048533 43 IHKVLLNLYNCCHIPSLSCAFFKWAESAVPNYKHS--LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALV 120 (591)
Q Consensus 43 ~~~~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 120 (591)
+..+.+.+....|++++|+..|+.+++..|..++. ..++..++.++...|++++|+..++.+..........
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------ 87 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW------ 87 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch------
Confidence 44555666667799999999999999988763222 2456778999999999999999999987643211111
Q ss_pred hhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC----CCc--c-CHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 121 KIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH----NLM--P-HLHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
+.....+..+...+...|++..|...+.+.... ... + ....+..+...+...|+++.+...+.....
T Consensus 88 ------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 88 ------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161 (366)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 111234556778899999999999998887642 111 1 123455666777888888888888887765
Q ss_pred CCCC----CCHHHHHHHHHHHHccCChhhHHHHHHHHhhC----CCCc--CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 194 LGVV----ANIHLYNVLIHACCKSSDVDKVEKLLCEMEFK----DVRA--DLFTYNTLIALYCKKGMHYEALAVQDRMER 263 (591)
Q Consensus 194 ~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 263 (591)
.... .....+......+...++...+...+.+.... +..+ ....+..+...+...|++++|...+.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 241 (366)
T d1hz4a_ 162 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241 (366)
T ss_dssp HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4322 22334455556666777777777766654331 1000 122344455566667777777777766554
Q ss_pred CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc------CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048533 264 EGIS---PDIVTYNSLIHGFCREGRMREARRLFRDIKG------ATPN-HVTYTTLIDGYCRANDLEEALRLREVMAA 331 (591)
Q Consensus 264 ~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 331 (591)
.... .....+..+...+...|++++|...++.... ..|+ ..++..+...|...|++++|.+.+++..+
T Consensus 242 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3221 1233445566667777777777777766542 1122 33455566666677777777776665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.4e-08 Score=95.32 Aligned_cols=264 Identities=13% Similarity=0.055 Sum_probs=149.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 048533 278 HGFCREGRMREARRLFRDIKGATPNH------VTYTTLIDGYCRANDLEEALRLREVMAAKGV-YPG----VVTYNSILR 346 (591)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~ 346 (591)
..+...|++++|.+++++.....|+. .++..+..++...|++++|...++....... .++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 33444555555555555544322221 2333444455555555555555554433100 001 122333444
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 048533 347 KLCKEGRIRDANRLLNEMNE----KKIAPD---NVTCNTLINAYCKIGDTASAMKVKNRMLEAGL----MLDQFTYKALI 415 (591)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 415 (591)
.+...|++..+...+..... .+.... ...+..+...+...|+++.+...+........ ......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 45555666666655554432 111111 12344455566667777777777666654321 11233445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHH
Q 048533 416 HGFCKAKEMDIAKELLFGMLDA--GFSPS----YCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLC---VDVSVYRALIR 486 (591)
Q Consensus 416 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 486 (591)
..+...++...+...+...... ..... ...+..+...+...|+++.|...++...+.... .....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 5666677777777766655431 11111 223445566677888888888888877654322 22445666788
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 487 RFCKKEKVDYAQRLFNLMQG----NGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 487 ~~~~~g~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
++...|++++|...++++.. .+..|+. ..+..+..+|.+.|++++|.+.+++.++
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999998888763 2444443 5778888899999999999999988766
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=4.1e-11 Score=112.01 Aligned_cols=257 Identities=7% Similarity=-0.084 Sum_probs=158.1
Q ss_pred HHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHH---HHHc-------CCCchHHHHHHHHHHHcCCCCchHHH
Q 048533 47 LLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIH---ILTK-------NKHFKSAQNMLEKIALRDFLSTPSVL 116 (591)
Q Consensus 47 l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~---~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~ 116 (591)
+.......+..++|+++++.+++.+|+ +..+|+.... .+.. .|++++|+..++.+.+.+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-------- 103 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------- 103 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--------
Confidence 333444445568999999999988887 5666543332 2333 234666777777766654
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCccCHHhHH-HHHHHHHhcCChhHHHHHHHHHHH
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLK--MTQDGLQVFDQMRVHNLMPHLHACT-VLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
|.+..++..+..++...+ ++++|+..++++.+.++. +...+. .....+...+.++.|+..++.+.+
T Consensus 104 ----------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~ 172 (334)
T d1dcea1 104 ----------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (334)
T ss_dssp ----------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred ----------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence 334445555555555544 367778788877776554 455544 344566667777778887777777
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048533 194 LGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTY 273 (591)
Q Consensus 194 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 273 (591)
.++. +...|..+..++.+.|++++|...++..... .|+ .......+...+..+++...+........ ++...+
T Consensus 173 ~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~ 245 (334)
T d1dcea1 173 RNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRC 245 (334)
T ss_dssp TTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSC
T ss_pred cCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHH
Confidence 7655 6677777777777777777665544433322 111 11233334555666667766666665532 234445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 274 NSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 274 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
..+...+...|+.++|...+.+.....|+ ..++..+..++...|+.++|.+.++.+.+.
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55566666667777777777776654443 455666667777777777777777777664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=2.6e-10 Score=102.14 Aligned_cols=223 Identities=13% Similarity=-0.030 Sum_probs=144.2
Q ss_pred ChhHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 56 IPSLSCAFFKWAESAVPNY-KHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 56 ~~~~A~~~f~~~~~~~p~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
+.+.|+..++.+....+.. +....+++.++.+|.+.|++++|+..|++++..+ |.++.++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~------------------p~~~~a~~ 75 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR------------------PDMPEVFN 75 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------CCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC------------------CCCHHHHh
Confidence 4566777777776543321 1234577889999999999999999999998865 45667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
.++.+|.+.|++++|++.|+++++.++. +..++..+..++...|+++.|.+.|+...+..+. +......+...+.+.+
T Consensus 76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 153 (259)
T d1xnfa_ 76 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLD 153 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred hhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhh
Confidence 8999999999999999999999998765 6778888999999999999999999999887643 4444444444555556
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMH----YEALAVQDRMEREGISP-DIVTYNSLIHGFCREGRMREA 289 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 289 (591)
..+.+..+........ ++...++ ++..+...... +.+...+...... .| ...+|..+...+...|++++|
T Consensus 154 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A 228 (259)
T d1xnfa_ 154 EKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSA 228 (259)
T ss_dssp HHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555554432 2222222 22222211111 1111111111110 11 123455666777777777777
Q ss_pred HHHHHHhhcCCCCh
Q 048533 290 RRLFRDIKGATPNH 303 (591)
Q Consensus 290 ~~~~~~~~~~~~~~ 303 (591)
.+.|+......|+.
T Consensus 229 ~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 229 TALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCC
Confidence 77777776655553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=3.6e-09 Score=97.08 Aligned_cols=188 Identities=9% Similarity=0.025 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048533 353 RIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLF 432 (591)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 432 (591)
..++|..+|+..++...+.+...|...+..+.+.|+.+.|..+|+.+...........|...+....+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788888888887655556677888888888999999999999998876544445678888888889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 048533 433 GMLDAGFSPSYCSYSWLVDG-YCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNG-IL 510 (591)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 510 (591)
.+++.+. .+...|...... +...|+.+.|..+|+.+.+..+ .++..|..++..+...|+++.|+.+|++..... ..
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9987653 333444443332 3456899999999999998643 378899999999999999999999999988753 33
Q ss_pred cC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048533 511 GD--SVIYTSLAYAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 511 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
|+ ...|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 357888888888899999999999988774
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=1.2e-09 Score=100.38 Aligned_cols=218 Identities=8% Similarity=-0.018 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--------------CchHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 048533 57 PSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNK--------------HFKSAQNMLEKIALRDFLSTPSVLNALVKI 122 (591)
Q Consensus 57 ~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (591)
++.+..+|+.|+...|. +..+|..-+..+...| ..++|..+|++.....
T Consensus 32 ~~Rv~~vyerAl~~~~~---~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~-------------- 94 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------------- 94 (308)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------------
T ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc--------------
Confidence 45567788888887776 6777665444332222 1233333333333211
Q ss_pred cCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048533 123 HDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHL 202 (591)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (591)
++.+..++...+..+.+.|++++|..+|+++++..+......|...+..+.+.|+.+.|.++|+++.+.++. +...
T Consensus 95 ---~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~ 170 (308)
T d2onda1 95 ---LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHV 170 (308)
T ss_dssp ---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHH
T ss_pred ---CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHH
Confidence 122223334444444455555555555555544433322334444445554555555555555554444332 2222
Q ss_pred HHHHHHH-HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHH
Q 048533 203 YNVLIHA-CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREG-ISPD--IVTYNSLIH 278 (591)
Q Consensus 203 ~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~ 278 (591)
|...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+++.|..+|++..+.. ..|+ ...|...+.
T Consensus 171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~ 249 (308)
T d2onda1 171 YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 2222221 22234444454444444433 12233444444444444444444444444444332 1111 223444444
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 048533 279 GFCREGRMREARRLFRDI 296 (591)
Q Consensus 279 ~~~~~g~~~~A~~~~~~~ 296 (591)
.-...|+.+.+.++++++
T Consensus 250 fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 250 FESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444444444444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.9e-09 Score=95.04 Aligned_cols=197 Identities=14% Similarity=0.019 Sum_probs=124.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048533 130 SHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHA 209 (591)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 209 (591)
..++..++.+|.+.|++++|++.|++.++.++. +..+|..+..++.+.|++++|+..|+++.+..+. +..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHH
Confidence 356777888899999999999999999888765 7888888899999999999999999998887655 56677778888
Q ss_pred HHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--
Q 048533 210 CCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMR-- 287 (591)
Q Consensus 210 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-- 287 (591)
+...|++++|...|+...+.. +.+......+..++.+.+..+.+..+..........+ ..++ ++..+.......
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHH
Confidence 888889999988888887763 2233333344444455555555555555555432221 1111 222222211111
Q ss_pred --HHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 288 --EARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 288 --~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
.+...+.......|+ ..+|..+...|...|++++|.+.|+.....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111111111122 234555666677777777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=3.8e-10 Score=105.27 Aligned_cols=280 Identities=6% Similarity=-0.064 Sum_probs=188.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHH--HHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLN--ALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
.++......+..++|+++++++...+|........ .++. .+......+...|++++|+..++.+.+.+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~----------~l~~~~~~~~~~~~~~~al~~~~~~l~~~ 103 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ----------HLETEKSPEESAALVKAELGFLESCLRVN 103 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------HHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH----------HHhhhcchHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455556689999999999877554322110 0000 00111223555677889999999999987
Q ss_pred CccCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChhhHHHHHHHHhhCCCCcCccc
Q 048533 161 LMPHLHACTVLLNSLAKDRL--TDMVWKVYKKMVQLGVVANIHLYN-VLIHACCKSSDVDKVEKLLCEMEFKDVRADLFT 237 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 237 (591)
++ +...|..+..++...++ +++|...++.+.+..+. +...+. .....+...|.++.|...++.....+ +-+..+
T Consensus 104 pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a 180 (334)
T d1dcea1 104 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 180 (334)
T ss_dssp TT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHH
T ss_pred CC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHH
Confidence 76 88888888888877664 78999999999987654 455543 44567778899999999999998875 457888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhc
Q 048533 238 YNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATP-NHVTYTTLIDGYCRA 316 (591)
Q Consensus 238 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~ 316 (591)
|+.+..++...|++++|...+....+. .|+ .......+...+..+++...+.......| +...+..+...+...
T Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 181 WHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 999999999999998887666544432 111 12233344555666677777776654333 355566666777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hHHHHHHHHHH
Q 048533 317 NDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPD-NVTCNTLINAY 383 (591)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 383 (591)
++.++|...+.+..... +.+...+..+..++...|+.++|.+.++..++. .|+ ...|..+...+
T Consensus 256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHH
Confidence 88888888888777653 124456677777788888888888888888775 343 33444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.6e-08 Score=75.87 Aligned_cols=100 Identities=9% Similarity=-0.121 Sum_probs=67.7
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+++..|. +..+|..++.++.+.|++++|+..++++.+.+ |
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------p 68 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------------P 68 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc---chhhhhcccccccccccccccchhhhhHHHhc------------------c
Confidence 33344457777777777777777766 67777777777777777777777777777654 3
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHH
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACT 169 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 169 (591)
.++..+..++.+|...|++++|+..|++..+..+. +...+.
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 109 (117)
T d1elwa_ 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKE 109 (117)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHH
T ss_pred chhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 44556666777777777777777777777766544 333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=6.4e-07 Score=80.80 Aligned_cols=198 Identities=11% Similarity=-0.046 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC----C-ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHN----L-MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA-----NIHL 202 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 202 (591)
|...+..|...+++++|++.|.++.+.. . ..-..+|..+..+|.+.|++++|.+.++...+..... ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 3334556889999999999999887631 1 1124578888888888999999988888766532111 1234
Q ss_pred HHHHHHHHH-ccCChhhHHHHHHHHhhC----CCCc-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----H-
Q 048533 203 YNVLIHACC-KSSDVDKVEKLLCEMEFK----DVRA-DLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPD-----I- 270 (591)
Q Consensus 203 ~~~ll~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~- 270 (591)
+..+...|. ..|++++|.+.+++.... +.++ -..++..+...+...|++++|++.|+++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 455555553 357888888877775432 1111 123466667777777777777777777665421111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048533 271 VTYNSLIHGFCREGRMREARRLFRDIKGATPNH------VTYTTLIDGYCR--ANDLEEALRLREVMA 330 (591)
Q Consensus 271 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~li~~~~~--~g~~~~a~~~~~~~~ 330 (591)
..+...+..+...|+++.|...+++..+..|+. .....++.++-. .+.+++|+..|+.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 122334445556677777777777776544421 123334444433 234566666555433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.1e-07 Score=70.64 Aligned_cols=96 Identities=9% Similarity=-0.130 Sum_probs=65.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 83 TMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
.-+..+.+.|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..++++++.++.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 69 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD------------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 69 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------------------CcchhhhhcccccccccccccccchhhhhHHHhccc
Confidence 34666677777777777777776654 344556666777777777777777777777766654
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVV 197 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (591)
+...|..+..++...|++++|+..|+...+..+.
T Consensus 70 -~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 70 -WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred -hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6667777777777777777777777777765443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.3e-07 Score=76.63 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
|.-+..+...|++++|++.|+.+. +.++.++..++.+|...|++++|++.|++.++.++
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i~---------------------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp 67 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAVQ---------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh
Confidence 445777888889999988887542 22345677788888899999999999999888876
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------------C-HHHHHHHHHHHHccCChhhHHHHHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVA--------------N-IHLYNVLIHACCKSSDVDKVEKLLCEM 226 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 226 (591)
. +..+|..+..++.+.|++++|+..|++..+..... + ..++..+..++.+.|++++|.+.+...
T Consensus 68 ~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 68 H-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6 78888888888888899999888888876532110 0 233445556667777777777777766
Q ss_pred hhCC
Q 048533 227 EFKD 230 (591)
Q Consensus 227 ~~~~ 230 (591)
....
T Consensus 147 ~~~~ 150 (192)
T d1hh8a_ 147 TSMK 150 (192)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 6543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.70 E-value=5.3e-05 Score=66.74 Aligned_cols=223 Identities=11% Similarity=0.004 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 048533 306 YTTLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCK----EGRIRDANRLLNEMNEKKIAPDNVTCNTLIN 381 (591)
Q Consensus 306 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 381 (591)
+..+...+...+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3334444444555555555555555443 33333334444433 334555555555554443 2233333333
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 382 AYCK----IGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFC----KAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGY 453 (591)
Q Consensus 382 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (591)
.+.. ..+.+.|...++.....|. ......+...+. .......+...+...... .+...+..+...|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 3322 2345555555555555432 222222222222 133455555555555543 3445555555555
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q 048533 454 CN----KNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWR 525 (591)
Q Consensus 454 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 525 (591)
.. ..+...+..+++...+.| ++.+...+...|.. ..++++|..+|++..+.| ++..+..|...|.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHT
T ss_pred ccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHc
Confidence 53 446667777777776654 55666666666654 567888888888888765 45566667777764
Q ss_pred ----cCChhHHHHHHHHHHHCCCCC
Q 048533 526 ----AGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 526 ----~g~~~~A~~~~~~~~~~~~~~ 546 (591)
..+.++|.++|++..+.|..+
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCHH
Confidence 337888888888888887553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1e-07 Score=77.24 Aligned_cols=93 Identities=10% Similarity=-0.071 Sum_probs=59.6
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+...|++++|+..|+.+++..|+ +..+|..++.++...|++++|+..|+++.+.+ |
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------------------p 75 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------K 75 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh---hhhhhhhhHHHHHhccccchHHHHHHHHHHHc------------------c
Confidence 33344556777777777777766665 66666667777777777777777777666654 3
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
.+..++..++.+|...|++++|+..+++..+.++
T Consensus 76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 109 (159)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445566666666666777777666666666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=3e-07 Score=82.97 Aligned_cols=208 Identities=10% Similarity=-0.049 Sum_probs=143.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
.|...+.+|...|++++|...|+++....... .+++....+|..++.+|.+.|++++|++.+++..+.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~------------~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~ 106 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKA------------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH
Confidence 35556778999999999999999987632110 011122356788899999999999999999987764
Q ss_pred CCc-----cCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhhHHHHHHHHhh
Q 048533 160 NLM-----PHLHACTVLLNSLAK-DRLTDMVWKVYKKMVQL----GVVA-NIHLYNVLIHACCKSSDVDKVEKLLCEMEF 228 (591)
Q Consensus 160 ~~~-----~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 228 (591)
... ....++..+...+.. .|+++.|++.|++..+. +..+ ...++..+...+.+.|++++|...|++...
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 211 124456677777744 69999999999987643 2111 134577889999999999999999999877
Q ss_pred CCCCcCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHh
Q 048533 229 KDVRADLF------TYNTLIALYCKKGMHYEALAVQDRMEREGIS-PD---IVTYNSLIHGFCR--EGRMREARRLFRDI 296 (591)
Q Consensus 229 ~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 296 (591)
........ .+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+.+++|+..|+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 53221111 2345556677899999999999998775321 11 2244556666654 34588888888776
Q ss_pred hcC
Q 048533 297 KGA 299 (591)
Q Consensus 297 ~~~ 299 (591)
.+.
T Consensus 267 ~~l 269 (290)
T d1qqea_ 267 MRL 269 (290)
T ss_dssp SCC
T ss_pred hhc
Confidence 643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1e-06 Score=73.50 Aligned_cols=127 Identities=13% Similarity=-0.053 Sum_probs=89.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048533 415 IHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKV 494 (591)
Q Consensus 415 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 494 (591)
...+...|+++.|.+.|.++ .+|+..++..+..+|...|++++|++.|+++++.++. ++..|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 34456677777777777654 2466677777777777788888888888877776554 677777777777788888
Q ss_pred HHHHHHHHHHHhCC--------------CCcC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048533 495 DYAQRLFNLMQGNG--------------ILGD-SVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMI 546 (591)
Q Consensus 495 ~~a~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (591)
++|.+.|++..... .+++ ..++..+..++.+.|++++|.+.++.+.+....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88887777776421 0111 2456677778888888888888888888765444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.3e-07 Score=73.46 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
...+..+.+.|++++|+..|+++.+.+ |.+...+..++.+|...|++++|+..|+++++.++
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p 75 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN------------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 75 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc------------------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc
Confidence 345666777777777777777777654 34555666777777777777777777777777665
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNV 205 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (591)
. +..+|..++.++...|++++|...+++..+..+. +...+..
T Consensus 76 ~-~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~-~~~~~~~ 117 (159)
T d1a17a_ 76 K-YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMK 117 (159)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 4 6677777777777777777777777777776533 3444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.59 E-value=9e-08 Score=72.11 Aligned_cols=89 Identities=11% Similarity=-0.063 Sum_probs=78.1
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCC
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPD 127 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (591)
+..+.+.|++++|+..|+.+++..|. +..++..++.++.+.|++++|+..|+++.+.+ |
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p 81 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------P 81 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccccc------------------c
Confidence 34445569999999999999998887 89999999999999999999999999998865 4
Q ss_pred CccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 128 GNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
.+..++..++..|...|++++|++.|++.+
T Consensus 82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 82 KDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 566788889999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00023 Score=62.51 Aligned_cols=112 Identities=12% Similarity=-0.100 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 048533 389 TASAMKVKNRMLEAGLMLDQFTYKALIHGFCK----AKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCN----KNNEE 460 (591)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 460 (591)
...+...+...... .+...+..+...+.. ..+...+...++...+.| +......+...|.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 44444444444442 244455555555543 344555666666665543 44444445444443 45778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 048533 461 ALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQRLFNLMQGNGI 509 (591)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 509 (591)
.|..+|+...+.| ++..+..|...|.. ..+.++|.++|++..+.|.
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 8888888877765 45566666666654 3367778888887777653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.52 E-value=3.3e-07 Score=68.88 Aligned_cols=92 Identities=9% Similarity=0.031 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
...++..+.+.|++++|+..|+++...+ |.++.++..++.+|.+.|++++|+..|+++++.+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 80 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE------------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 80 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc------------------cccchhhhhhhhhhhhhhhHHHhhcccccccccc
Confidence 4556777888888888888888877755 4455677777888888888888888888888776
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 191 (591)
+. +..++..+..++...|++++|++.+++.
T Consensus 81 p~-~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 81 PK-DIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55 6777778888888888888888877765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=9.9e-07 Score=74.58 Aligned_cols=97 Identities=9% Similarity=-0.021 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHh
Q 048533 78 LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMR 157 (591)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 157 (591)
....-..+..+.+.|++++|+..|++++..+ |.++.+|..++.+|.+.|++++|+..|++++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~------------------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al 65 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRAL 65 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH
Confidence 4444456666666666666666666666544 3344556666666666666666666666666
Q ss_pred hCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 158 VHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
+.++. +..+|..+..++...|+++.|+..|+.+.+
T Consensus 66 ~l~p~-~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 66 ELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp TSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65544 555666666666666666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=1.9e-06 Score=72.83 Aligned_cols=99 Identities=11% Similarity=-0.104 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048533 406 LDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALI 485 (591)
Q Consensus 406 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 485 (591)
|+...+......+.+.|++++|...|.++++.. +.+...|..+..+|.+.|+++.|+..++.+++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677777788888999999999999999988765 456788888999999999999999999999876544 678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 048533 486 RRFCKKEKVDYAQRLFNLMQG 506 (591)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~~~~ 506 (591)
.+|...|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=7e-07 Score=67.87 Aligned_cols=90 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred CCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCcc
Q 048533 54 CHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHF---KSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNS 130 (591)
Q Consensus 54 ~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (591)
.+++++|.+.|+.++...|. +..+++.++.+|.+.++. ++|+.+|+++...++.+ ...
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~----------------~~~ 72 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE----------------EQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH----------------HHH
T ss_pred HHHHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc----------------hHH
Confidence 36899999999999998887 899999999999876655 46899998887654211 112
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLM 162 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 162 (591)
+++..++.+|.+.|++++|++.|+++++.+|.
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence 46777888999999999999999999987644
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.4e-06 Score=68.71 Aligned_cols=95 Identities=16% Similarity=-0.053 Sum_probs=53.3
Q ss_pred HhhhcCCCChhHHHHHHHHHhhhCCCCCCC------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHH
Q 048533 48 LNLYNCCHIPSLSCAFFKWAESAVPNYKHS------------LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSV 115 (591)
Q Consensus 48 ~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 115 (591)
+..+...|+++.|+..|+.+++..|..... ..+|..++.+|.+.|++++|+..++.++..+
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~------- 92 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------- 92 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-------
Confidence 445556699999999999998876642211 1223344555555555555555555555443
Q ss_pred HHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 116 LNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
|.++.++..++.+|...|++++|+..|+++.+.+
T Consensus 93 -----------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 93 -----------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 2233444445555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.9e-06 Score=66.45 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=81.0
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDD 125 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (591)
-++..+...|++++|+..|+.+++..|. +..++..++.+|.+.|++++|+..+++++..++........
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~-------- 77 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ-------- 77 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH--------
Confidence 4566677779999999999999999887 88899999999999999999999999988754322111100
Q ss_pred CCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 126 PDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
-..+|..++..+...+++++|++.|++.+....
T Consensus 78 ---~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 78 ---IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 113567788889999999999999999877643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=0.0012 Score=59.10 Aligned_cols=130 Identities=13% Similarity=0.098 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
..++..+.+.|.++.|..+|..+.. +..++..|.+.+++..|.+++.+..
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d--------------------------~~rl~~~~v~l~~~~~avd~~~k~~---- 67 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN--------------------------FGRLASTLVHLGEYQAAVDGARKAN---- 67 (336)
T ss_dssp -----------CTTTHHHHHHHTTC--------------------------HHHHHHHHHTTTCHHHHHHHHHHHT----
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC--------------------------HHHHHHHHHhhccHHHHHHHHHHcC----
Confidence 3577888899999999999977653 4556777888999999988876552
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTL 241 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (591)
+..+|..+...+.+......+ .+.......+......++..|-..|.++....+++...... ..+...++.+
T Consensus 68 --~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L 139 (336)
T d1b89a_ 68 --STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 139 (336)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHH
T ss_pred --CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHH
Confidence 566888888888887766443 22233334466666778888999999999999998876442 4466677888
Q ss_pred HHHHHhcC
Q 048533 242 IALYCKKG 249 (591)
Q Consensus 242 i~~~~~~g 249 (591)
+..|++.+
T Consensus 140 ~~lyak~~ 147 (336)
T d1b89a_ 140 AILYSKFK 147 (336)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 88887753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.5e-06 Score=63.90 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=62.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcCH-HHHHHHHHHH
Q 048533 448 WLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEK---VDYAQRLFNLMQGNGILGDS-VIYTSLAYAY 523 (591)
Q Consensus 448 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 523 (591)
.++..+...+++++|.+.|+++.+.++. ++.++..+..++.+.++ +++|+.+++++...+..|+. .+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4556666677777777777777776543 66777777777765443 34577777777665433332 3566677777
Q ss_pred HHcCChhHHHHHHHHHHHCC
Q 048533 524 WRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~ 543 (591)
.+.|++++|++.|+++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 77777777777777777743
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.1e-05 Score=63.80 Aligned_cols=123 Identities=10% Similarity=-0.091 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc---hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 80 SHWTMIHILTKNKHFKSAQNMLEKIALRDFLST---PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 80 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
.+...+..+.+.|++++|+..|++++...+... ......... ....++..++.+|.+.|++++|+..++..
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA------LRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhch------hHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 345678899999999999999999887532211 110000000 01134566777888888888888888888
Q ss_pred hhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 157 RVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
++.++. +..++..+..++...|+++.|+..|+.+.+.++. +..+...+-.+.
T Consensus 89 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 89 LELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred hhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 887765 7778888888888888888888888888876543 555554444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=0.0011 Score=59.28 Aligned_cols=135 Identities=12% Similarity=0.090 Sum_probs=71.5
Q ss_pred cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHHHH
Q 048533 163 PHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLI 242 (591)
Q Consensus 163 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 242 (591)
||..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444455566666677777777777765432 4455666677777777766665442 445666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-CCCChhhHHHHHHHHHhcC
Q 048533 243 ALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKG-ATPNHVTYTTLIDGYCRAN 317 (591)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g 317 (591)
..+.+......+ .+...+...++.....++..|-..|.+++...++....+ ...+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 666665544332 222222334555556677777777777777777776654 2445556677777776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.22 E-value=9.3e-06 Score=64.66 Aligned_cols=63 Identities=11% Similarity=-0.094 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGV 196 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 196 (591)
++.++.+|.+.|++++|++.++++++.++. +..+|..+..++...|+++.|+..|+...+.++
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555566666666666666666555543 555666666666666666666666666655543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=1.1e-05 Score=65.45 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
++.+..+|.+.|++++|+..++++++.++. +..+|..+..++...|+++.|+..|+.+.+..+. +......+-.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 142 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 444555566666666666666666655543 5556666666666666666666666666655433 444444433333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.8e-07 Score=91.48 Aligned_cols=226 Identities=10% Similarity=-0.008 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHH
Q 048533 59 LSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVI 138 (591)
Q Consensus 59 ~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (591)
+|...|+.|.+..|+ ...++..++.++...|++++| |++++..++.-... . .+..
T Consensus 4 eA~q~~~qA~~l~p~---~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~-----~----------~~e~---- 58 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD---MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALD-----K----------KVEQ---- 58 (497)
T ss_dssp HHHHHHHHHHHHHGG---GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHH-----H----------THHH----
T ss_pred HHHHHHHHHHHcCCC---CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHH-----H----------hHHH----
Confidence 688999999988887 556677788888888888876 67766543210000 0 0000
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 048533 139 FYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLN--SLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDV 216 (591)
Q Consensus 139 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 216 (591)
..-...+..+++.++...+....++..-....+. .....+.++.++..+....+..+ ++...+..+...+.+.|+.
T Consensus 59 -~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~ 136 (497)
T d1ya0a1 59 -DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHT 136 (497)
T ss_dssp -HHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred -HHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCH
Confidence 0001124556677776665543333222221111 12223445555555544443322 2445566666777777777
Q ss_pred hhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048533 217 DKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDI 296 (591)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 296 (591)
+.|...+....... ...++..+...+...|++++|...|.+..+..+ -+...|+.+...+...|+..+|...|.+.
T Consensus 137 ~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 137 SAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp ------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777666554321 124566677777778888888888887777532 24567788888888888888888888777
Q ss_pred hcCC-CChhhHHHHHHHHHh
Q 048533 297 KGAT-PNHVTYTTLIDGYCR 315 (591)
Q Consensus 297 ~~~~-~~~~~~~~li~~~~~ 315 (591)
.... |-..++..+...+.+
T Consensus 213 l~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 213 IAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HSSSBCCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHH
Confidence 6633 345666666665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.18 E-value=3.7e-05 Score=62.20 Aligned_cols=143 Identities=11% Similarity=-0.081 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048533 79 QSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV 158 (591)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 158 (591)
..+...+..+.+.|++.+|+..|++++..-.. ... .. .+.....+.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~--------------~~~----------------~~-~~~~~~~~~~-- 62 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM--------------EYG----------------LS-EKESKASESF-- 62 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------CCS----------------CC-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------hhc----------------cc-hhhhhhcchh--
Confidence 34556788999999999999999887752110 000 00 0001111111
Q ss_pred CCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccH
Q 048533 159 HNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTY 238 (591)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 238 (591)
....|+.+..++.+.|++++|+..++...+.++. +...|..+..++...|++++|...|++....+ |.+..+.
T Consensus 63 -----~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~ 135 (168)
T d1kt1a1 63 -----LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAAR 135 (168)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHH
T ss_pred -----HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 1335777889999999999999999999998765 88899999999999999999999999999875 3455555
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHH
Q 048533 239 NTLIALYCKKGMHY-EALAVQDRM 261 (591)
Q Consensus 239 ~~li~~~~~~g~~~-~a~~~~~~~ 261 (591)
..+..+....+... ...++|..|
T Consensus 136 ~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 136 LQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555544444333 233444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=1.8e-05 Score=62.95 Aligned_cols=124 Identities=10% Similarity=-0.057 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 048533 81 HWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHN 160 (591)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 160 (591)
+...+..+.+.|+|.+|+..|+++...-+... .. .+.... .....
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~---------------~~----------------~~~~~~--~~~~~-- 64 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE---------------EW----------------DDQILL--DKKKN-- 64 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT---------------TC----------------CCHHHH--HHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh---------------hh----------------hhHHHH--Hhhhh--
Confidence 44567888899999999999998876322110 00 000000 00000
Q ss_pred CccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCCCCcCcccHHH
Q 048533 161 LMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKDVRADLFTYNT 240 (591)
Q Consensus 161 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (591)
....+|..+..+|.+.|+++.|++.+..+++.++. +..+|..+..++...|++++|...|+.....+ |-+..+...
T Consensus 65 --~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~ 140 (153)
T d2fbna1 65 --IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNS 140 (153)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred --HHHHHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 12346788999999999999999999999998765 88999999999999999999999999998874 224444444
Q ss_pred HHH
Q 048533 241 LIA 243 (591)
Q Consensus 241 li~ 243 (591)
+-.
T Consensus 141 l~~ 143 (153)
T d2fbna1 141 YEL 143 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.1e-06 Score=85.70 Aligned_cols=227 Identities=11% Similarity=-0.026 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHH
Q 048533 96 SAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL 175 (591)
Q Consensus 96 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 175 (591)
+|.+.|+++.... ++..+.+..++.+|..++++++| |++++..++. ....++. ...
T Consensus 4 eA~q~~~qA~~l~------------------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~--e~~ 59 (497)
T d1ya0a1 4 QSAQYLRQAEVLK------------------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKV--EQD 59 (497)
T ss_dssp HHHHHHHHHHHHH------------------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTH--HHH
T ss_pred HHHHHHHHHHHcC------------------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhH--HHH
Confidence 6778888877643 22333445566667778888776 6777665322 1111111 111
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhH
Q 048533 176 AKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIH--ACCKSSDVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYE 253 (591)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 253 (591)
.....+..+.+.++...+....++..-....+. .....+.++.|+..+....... +++...+..+...+.+.|+.+.
T Consensus 60 Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~ 138 (497)
T d1ya0a1 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSA 138 (497)
T ss_dssp HHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHH
Confidence 111224556777777766543334332222221 2223455666665555544332 3456678888888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048533 254 ALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPN-HVTYTTLIDGYCRANDLEEALRLREVMAAK 332 (591)
Q Consensus 254 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 332 (591)
|...+....... ...++..+...+...|++++|...|.+.....|+ ..+|+.+...+...|+..+|...|.+....
T Consensus 139 A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 139 IVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp ----CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 998887765431 2357788899999999999999999999887776 578999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 048533 333 GVYPGVVTYNSILRKLCKE 351 (591)
Q Consensus 333 ~~~p~~~~~~~ll~~~~~~ 351 (591)
. +|-..++..|...+.+.
T Consensus 216 ~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 216 K-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp S-BCCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHh
Confidence 4 56777888888777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=1.2e-05 Score=65.37 Aligned_cols=125 Identities=8% Similarity=-0.121 Sum_probs=81.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048533 82 WTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNL 161 (591)
Q Consensus 82 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 161 (591)
...+..+.+.|++++|+..|++++....... ............+....++..++.+|.+.|++++|+..++++++.++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhh--hhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 3456677888888888888887764210000 00000000001122344566678888888888888888888888776
Q ss_pred ccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048533 162 MPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHAC 210 (591)
Q Consensus 162 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 210 (591)
. +..+|..+..++...|+++.|++.|+.+.+..+. +..+...+..+.
T Consensus 109 ~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 109 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred h-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 5 7788888888888888888888888888887554 555555544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.2e-05 Score=58.56 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----cC-HHHHHHHH
Q 048533 447 SWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGIL-----GD-SVIYTSLA 520 (591)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~-~~~~~~l~ 520 (591)
..+...+...|++++|+..|.++++.++. +..++..+..+|...|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776543 6777777777777777777777777777652110 00 13566677
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 048533 521 YAYWRAGEPKACSDILDDMYRR 542 (591)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~ 542 (591)
..+...+++++|+..|++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 7777777888888888777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=1.2e-05 Score=65.46 Aligned_cols=111 Identities=12% Similarity=-0.034 Sum_probs=85.7
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCC-------------CCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCc
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPN-------------YKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLST 112 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 112 (591)
..+..+...|+++.|+..|+.+++..+. .+....++..++.++.+.|++++|+..++++++.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---- 107 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID---- 107 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh----
Confidence 3455566679999999999888642110 01134566788999999999999999999998865
Q ss_pred hHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHH
Q 048533 113 PSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSL 175 (591)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 175 (591)
|.++.++..++.+|...|++++|++.|+++++.++. +..+...+..+.
T Consensus 108 --------------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 108 --------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred --------------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 456678899999999999999999999999998765 666665555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.02 E-value=7.5e-06 Score=64.43 Aligned_cols=112 Identities=11% Similarity=-0.034 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC----------CCchHHHHHHHHHHHcCCCCchHHHHHHHhhcC
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKN----------KHFKSAQNMLEKIALRDFLSTPSVLNALVKIHD 124 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (591)
+.+++|+..|+.+++..|+ +..++..++.++... +.+++|+..|+++.+.+
T Consensus 11 ~~fe~A~~~~e~al~~~P~---~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~---------------- 71 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred ccHHHHHHHHHHHHhhCCc---chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc----------------
Confidence 5689999999999999988 899999999888755 44567888888887765
Q ss_pred CCCCccchHHHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048533 125 DPDGNSHVLSWLVIFYANLKM-----------TQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ 193 (591)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 193 (591)
|.+..++..++.+|...|+ +++|.+.|+++++.++ +...+...+..+ ..|.+++.++.+
T Consensus 72 --P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P--~~~~~~~~L~~~------~ka~~~~~e~~k 141 (145)
T d1zu2a1 72 --PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP--DNTHYLKSLEMT------AKAPQLHAEAYK 141 (145)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred --chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC--CHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 4556677778888876553 4667777777666543 333333222222 345556665555
Q ss_pred CC
Q 048533 194 LG 195 (591)
Q Consensus 194 ~~ 195 (591)
.|
T Consensus 142 ~~ 143 (145)
T d1zu2a1 142 QG 143 (145)
T ss_dssp SS
T ss_pred Hh
Confidence 54
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=8.6e-05 Score=60.38 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=55.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 048533 131 HVLSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQ-----LGVVANIHL 202 (591)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 202 (591)
.++..++..+.+.|++++|+..++++++.++. +...|..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 35566777888888888888888888887766 788888888888888888888888887743 577777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.91 E-value=6.7e-06 Score=71.88 Aligned_cols=122 Identities=15% Similarity=-0.017 Sum_probs=80.8
Q ss_pred CCCChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccch
Q 048533 53 CCHIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHV 132 (591)
Q Consensus 53 ~~~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (591)
..|++++|+..|+.+++..|. +...+..++.+|...|++++|...|+...+.++. ....
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~---d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~------------------~~~~ 66 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK---DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------------------YLPG 66 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG------------------GHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------------cHHH
Confidence 459999999999999998887 8999999999999999999999999999886532 2233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048533 133 LSWLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLG 195 (591)
Q Consensus 133 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 195 (591)
+..+...+...+..+++..-.......+..++...+...+..+...|+.++|.+.++.+.+..
T Consensus 67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 333333333333333332221111111222233444555566777788888888888877654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.00018 Score=58.46 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=81.4
Q ss_pred hhcCCCChhHHHHHHHHHhhhCCCCCCC-------------------HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 048533 50 LYNCCHIPSLSCAFFKWAESAVPNYKHS-------------------LQSHWTMIHILTKNKHFKSAQNMLEKIALRDFL 110 (591)
Q Consensus 50 ~~~~~~~~~~A~~~f~~~~~~~p~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 110 (591)
.....|+++.|...|+.++...++.... ..++..++.++.+.|++++|+..++++...+
T Consensus 20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-- 97 (179)
T d2ff4a2 20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-- 97 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--
Confidence 3345699999999999999876652111 1345678999999999999999999999876
Q ss_pred CchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCccCHHh
Q 048533 111 STPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRV-----HNLMPHLHA 167 (591)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 167 (591)
|.+..++..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 98 ----------------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 ----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp ----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ----------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 56778899999999999999999999999754 588887654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=0.00012 Score=57.22 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcC
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKE-----------KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAG 527 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 527 (591)
+++|+..++++++.++. +..+|..++.+|...| .+++|.+.|++..+ +.|+...+..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH----
Confidence 45566666666665443 5566666666665443 24666667777665 355555444333332
Q ss_pred ChhHHHHHHHHHHHCC
Q 048533 528 EPKACSDILDDMYRRR 543 (591)
Q Consensus 528 ~~~~A~~~~~~~~~~~ 543 (591)
..|.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 34556666665554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=8.6e-05 Score=53.11 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQM 156 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 156 (591)
+.+-.+.++.++.+.|++++|+..|+++.+..+.... .......++..++.+|.+.|++++|+..++++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a 72 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI-----------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc-----------cCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence 4455678999999999999999999998774322110 11233467888999999999999999999999
Q ss_pred hhCCCccCHHhHHHH
Q 048533 157 RVHNLMPHLHACTVL 171 (591)
Q Consensus 157 ~~~~~~~~~~~~~~l 171 (591)
++.+|. +..+++.+
T Consensus 73 L~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 73 LELDPE-HQRANGNL 86 (95)
T ss_dssp HHHCTT-CHHHHHHH
T ss_pred HHhCcC-CHHHHHHH
Confidence 998765 55555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=3.3e-05 Score=67.38 Aligned_cols=123 Identities=8% Similarity=-0.081 Sum_probs=75.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhH
Q 048533 140 YANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKV 219 (591)
Q Consensus 140 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 219 (591)
..+.|++++|+..+++.++.++. +...+..+...++..|++++|.+.++...+..+. +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 44678888999999888888776 8888888888888889999998888888876543 344444444444333333222
Q ss_pred HHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048533 220 EKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMERE 264 (591)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 264 (591)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 211111111111222233334445566677777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.40 E-value=0.0004 Score=55.01 Aligned_cols=101 Identities=9% Similarity=-0.100 Sum_probs=73.2
Q ss_pred hhhcCCCChhHHHHHHHHHhhhCCCCCCC---------HHHHHHHHHHHHcCCCchHHHHHHHHHHHcCC---CCchHHH
Q 048533 49 NLYNCCHIPSLSCAFFKWAESAVPNYKHS---------LQSHWTMIHILTKNKHFKSAQNMLEKIALRDF---LSTPSVL 116 (591)
Q Consensus 49 ~~~~~~~~~~~A~~~f~~~~~~~p~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~ 116 (591)
......|++++|+..|+.+++..|+.+.. ..+|..++.+|.+.|++++|+..+++.+...+ ......-
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 33444589999999999999877765432 24677899999999999999999999876321 0000000
Q ss_pred HHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048533 117 NALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVFDQMRVH 159 (591)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 159 (591)
+....++..++.+|...|++++|+..|+++++.
T Consensus 97 ----------~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 ----------KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011235677889999999999999999997763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0003 Score=50.14 Aligned_cols=66 Identities=8% Similarity=-0.142 Sum_probs=53.8
Q ss_pred HHHhhhcCCCChhHHHHHHHHHhhhCCCCC---C-CHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 048533 46 VLLNLYNCCHIPSLSCAFFKWAESAVPNYK---H-SLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLS 111 (591)
Q Consensus 46 ~l~~~~~~~~~~~~A~~~f~~~~~~~p~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 111 (591)
-++..+.+.|+++.|+..|+.+++..|..+ + ...++..++.++.+.|++++|+..++++++.+|..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 456666778999999999999987755422 1 25678899999999999999999999999987543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.0037 Score=49.14 Aligned_cols=92 Identities=10% Similarity=-0.083 Sum_probs=63.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCcC-
Q 048533 450 VDGYCNKNNEEALLKLLDEFVSRGLC-V----------DVSVYRALIRRFCKKEKVDYAQRLFNLMQGN-----GILGD- 512 (591)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~- 512 (591)
...+...|++++|++.|++.++.... | ....|+.+..+|...|++++|...+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455667777777777776653111 1 1356778888888888888888888877642 11111
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048533 513 ----SVIYTSLAYAYWRAGEPKACSDILDDMYR 541 (591)
Q Consensus 513 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (591)
...+..+..+|...|++++|+..|+++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 13567788999999999999999999876
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.84 E-value=0.023 Score=42.81 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 048533 423 EMDIAKELLFGMLDAGFSPSYCSYSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCK----KEKVDYAQ 498 (591)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 498 (591)
++++|.++|++..+.|.. . ....+. .....+.++|.+++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 445555555555554421 1 111111 123446667777777776654 44555555555543 34677777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCC
Q 048533 499 RLFNLMQGNGILGDSVIYTSLAYAYWR----AGEPKACSDILDDMYRRRL 544 (591)
Q Consensus 499 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 544 (591)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777777765 44445555555555 3467777777777777764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.11 Score=38.94 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHCC
Q 048533 318 DLEEALRLREVMAAKG 333 (591)
Q Consensus 318 ~~~~a~~~~~~~~~~~ 333 (591)
++++|.++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555554444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.52 E-value=0.25 Score=35.35 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048533 477 DVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLM 545 (591)
Q Consensus 477 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 545 (591)
+...+...+.....+|.-+.-.++++.+.+. -+|++.....+..+|.+.|...++.+++.++.++|++
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4455667778888889988888888887774 4778888888999999999999999999999998875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.21 Score=36.14 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048533 474 LCVDVSVYRALIRRFCKKE---KVDYAQRLFNLMQGNGILGDS-VIYTSLAYAYWRAGEPKACSDILDDMYRRR 543 (591)
Q Consensus 474 ~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (591)
..|...+-..+..+++++. ++++++.+++.+...+ +.+. ..+-.+.-+|.+.|++++|.+.++.+++..
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3456666666777777654 4567788888777642 2233 566677778888888888888888888854
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.099 Score=37.91 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHcCC---CchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHHHHHHHHHhcCChHHHHHHH
Q 048533 77 SLQSHWTMIHILTKNK---HFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLSWLVIFYANLKMTQDGLQVF 153 (591)
Q Consensus 77 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 153 (591)
+..+.+..+-++.++. +.++++.+|+.+.+.++ ....+.+..|+.+|.+.|++++|++.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-----------------~~~rd~lY~Lav~yyklgdy~~A~~~~ 96 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-----------------SRRRECLYYLTIGCYKLGEYSMAKRYV 96 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----------------GGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-----------------hhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5777888888888774 45678999988876532 233467888999999999999999999
Q ss_pred HHHhhCCCc
Q 048533 154 DQMRVHNLM 162 (591)
Q Consensus 154 ~~~~~~~~~ 162 (591)
+.+++..+.
T Consensus 97 ~~~L~ieP~ 105 (124)
T d2pqrb1 97 DTLFEHERN 105 (124)
T ss_dssp HHHHHHCTT
T ss_pred HHHHccCCC
Confidence 999998654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.26 E-value=0.6 Score=33.40 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=79.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048533 246 CKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCREGRMREARRLFRDIKGATPNHVTYTTLIDGYCRANDLEEALRL 325 (591)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 325 (591)
.-.|..++..+++.+.... .+..-||.++--....-+.+...+.++.+-.. -|. ..+++.......
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG----------GGCSCTHHHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCc----------hhhhcHHHHHHH
Confidence 3457777777777776653 35566666666666666666666666666431 111 113333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048533 326 REVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEKKIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLM 405 (591)
Q Consensus 326 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (591)
+-.+- -+...+...+..+.+.|+-++-.++++.+.+. -.+++...-.+..+|.+.|+..++-+++.++-+.|.+
T Consensus 79 ~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 32221 13334455556666666666666666666553 3456666666666777777777777776666666543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=2.3 Score=39.15 Aligned_cols=57 Identities=9% Similarity=-0.064 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhhHHHHHHHHhhCC
Q 048533 169 TVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSSDVDKVEKLLCEMEFKD 230 (591)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 230 (591)
...+..+.+.++++..+..+. ..+.+...-.....+....|+.+.|...+..+-..|
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 344566777777766444331 122345555566777788888888888777765544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=2.8 Score=38.49 Aligned_cols=375 Identities=11% Similarity=0.043 Sum_probs=195.4
Q ss_pred CChhHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCCCccchHH
Q 048533 55 HIPSLSCAFFKWAESAVPNYKHSLQSHWTMIHILTKNKHFKSAQNMLEKIALRDFLSTPSVLNALVKIHDDPDGNSHVLS 134 (591)
Q Consensus 55 ~~~~~A~~~f~~~~~~~p~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (591)
..+.....++ +.+|+.|........-...+.+.+++++.+..+ ...+.+...-.
T Consensus 53 ~~~~~i~~Fl----~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----------------------~~~p~~~~~~c 106 (450)
T d1qsaa1 53 QPAVTVTNFV----RANPTLPPARTLQSRFVNELARREDWRGLLAFS----------------------PEKPGTTEAQC 106 (450)
T ss_dssp CCHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----------------------CSCCSSHHHHH
T ss_pred CCHHHHHHHH----HHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----------------------cCCCCCHHHHH
Confidence 3444444433 337764444344444566677777765543332 12233444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCHHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 048533 135 WLVIFYANLKMTQDGLQVFDQMRVHNLMPHLHACTVLLNSLAKDRLTDMVWKVYKKMVQLGVVANIHLYNVLIHACCKSS 214 (591)
Q Consensus 135 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 214 (591)
..+.+....|+..+|...+..+-..|.. ....+.. +|..+.+.|. ++...+-.-+......|
T Consensus 107 ~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~----------------l~~~~~~~~~-lt~~~~~~R~~~~l~~~ 168 (450)
T d1qsaa1 107 NYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDK----------------LFSVWRASGK-QDPLAYLERIRLAMKAG 168 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHH----------------HHHHHHHTTC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHH----------------HHHHHHhcCC-CCHHHHHHHHHHHHHcC
Confidence 6677778888888888877776655433 2223333 3333333333 24444444555566667
Q ss_pred ChhhHHHHHHHHhhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHH
Q 048533 215 DVDKVEKLLCEMEFKDVRADLFTYNTLIALYCKKGMHYEALAVQDRMEREGISPDIVTYNSLIHGFCR--EGRMREARRL 292 (591)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~ 292 (591)
++..|..+...+... ........+.... +...+.... ... .++......+..++.+ ..+.+.|...
T Consensus 169 ~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~ 236 (450)
T d1qsaa1 169 NTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAVAFASVARQDAENARLM 236 (450)
T ss_dssp CHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHH
Confidence 777777666543321 1122223332221 222222222 111 1222222222233222 2467777777
Q ss_pred HHHhhc-CCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048533 293 FRDIKG-ATPNHVTYT----TLIDGYCRANDLEEALRLREVMAAKGVYPGVVTYNSILRKLCKEGRIRDANRLLNEMNEK 367 (591)
Q Consensus 293 ~~~~~~-~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 367 (591)
+..... ...+..-+. .+...+...+..+.+..++......+ .+.......+......+++..+...+..+...
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~ 314 (450)
T d1qsaa1 237 IPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (450)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred HHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc
Confidence 777654 222222222 22223334566677777777666653 34444444555556678888888888776543
Q ss_pred CCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC-HH
Q 048533 368 KIAPDNVTCNTLINAYCKIGDTASAMKVKNRMLEAGLMLDQFTYKALIHGFCKAKEMDIAKELLFGMLDAGF--SPS-YC 444 (591)
Q Consensus 368 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~ 444 (591)
........-=+..++...|+.+.|...|..+... ++ .|..|... +.|..-. +..... .+. ..
T Consensus 315 -~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~ 379 (450)
T d1qsaa1 315 -AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKIDKAPQNVDSAL 379 (450)
T ss_dssp -GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCCCCCSCCCCHH
T ss_pred -cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcCCCCccHHHhh
Confidence 2223344455667788888888888888887642 23 23322211 1121000 000000 000 00
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048533 445 S---YSWLVDGYCNKNNEEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQ 505 (591)
Q Consensus 445 ~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 505 (591)
. -...+..+...|....|...|..+... .+......+.....+.|.++.|+....+..
T Consensus 380 ~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 112345566789999999988888754 255666677788888899999888777664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.94 E-value=0.82 Score=30.90 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048533 493 KVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPKACSDILDDMYRRRLMITLKIYRSFSA 556 (591)
Q Consensus 493 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (591)
+.=+.++-++.+...++.|++.+..+.+++|.+.+++..|.++++-...+.- ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 4445666666777777777888788888888888888888888877776522 23445555443
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.10 E-value=1.1 Score=32.63 Aligned_cols=106 Identities=13% Similarity=0.286 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 048533 481 YRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLAYAYWRAGEPK--ACSDILDDMYRRRLMITLKIYRSFSASY 558 (591)
Q Consensus 481 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (591)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++.. .+.+++..+...|+.+.......+...+
T Consensus 10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i~~Gf~~~l 88 (129)
T d2nsza1 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456777788888888888888887421111 1233444445555544432 3566888888887654443333333333
Q ss_pred hcch----------hHHHHHHHHHHhcCCCChHHHHHHH
Q 048533 559 AKDN----------EILDLFWSHVVDRGLMSKHIFKEMQ 587 (591)
Q Consensus 559 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
.... ++...|-..++.+|.++.++..++.
T Consensus 89 ~~l~Dl~lDvP~a~~~l~~fi~rav~d~~l~~~~~~~~p 127 (129)
T d2nsza1 89 NEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCP 127 (129)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCT
T ss_pred hhCcHHhhccccHHHHHHHHHHHHHHcCCCCHHHHhhCC
Confidence 3322 3334677888999999998876654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.54 E-value=2.9 Score=28.20 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048533 459 EEALLKLLDEFVSRGLCVDVSVYRALIRRFCKKEKVDYAQRLFNLMQGNGILGDSVIYTSLA 520 (591)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 520 (591)
.-++.+-+..+...+..|++.+..+.+++|.+.+++..|.++++-...+ ..++..+|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3445555555555566667777777777777777777777777666643 222344554443
|