Citrus Sinensis ID: 048544

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHcccEEEEEEcccccccccccccccccccccccccHHHHHHHHccccccEEcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHcccEEEEcccccccEEEEcccccccccccccccHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
magqsdphvslfsppevefmaEDELVeivpnmrmdplnficgdfgpfypqipvkVPLWLAAALKKrgkctirppqwmsIENLTKVLEgeredrgtfqavpfHYIEISRLLFDharddipdiyMVRSLIEDIRDVRLHKIETNLEkfsatsavk
Flexible Loop (DISEMBL)
magqsdphvslfsppevEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRgkctirppqwmsiENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIetnlekfsatsavk
Low Complexity Region (SEG)
MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK
Disordered region (IsUnstruct)
******************FMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETN***********
Disordered Region (DISOPRED)
*************PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSA*****
Disordered Region (DISEMBL)
*********SLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK
Disordered Region (DISPRO)
********VSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q9C7A8	210	DNA replication complex G	yes	no	1.0	0.728	0.784	5e-70
Q9D600	185	DNA replication complex G	yes	no	0.849	0.702	0.484	2e-31
Q9Y248	185	DNA replication complex G	yes	no	0.849	0.702	0.462	4e-30
Q7ZT46	185	DNA replication complex G	N/A	no	0.862	0.713	0.453	1e-28
Q8IHI1	190	Probable DNA replication	N/A	no	0.875	0.705	0.407	9e-28
Q54BL9	223	Probable DNA replication	yes	no	0.856	0.587	0.427	3e-27
P0CQ30	185	DNA replication complex G	yes	no	0.869	0.718	0.421	7e-26
P0CQ31	185	DNA replication complex G	N/A	no	0.869	0.718	0.421	7e-26
O62193	180	Probable DNA replication	yes	no	0.843	0.716	0.374	5e-23
O94329	183	DNA replication complex G	yes	no	0.882	0.737	0.389	1e-20

>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2

 Score =  262 bits (670), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 135/153 (88%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
           +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

The GINS complex plays an essential role in the initiation of DNA replication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2 OS=Mus musculus GN=Gins2 PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 2/132 (1%)

Query: 16  EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
           EVEF+AE ELV I+PN  +D +  I GD GPF P +PV VPLWLA  LK+R KC + PP+
Sbjct: 5   EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPE 64

Query: 76  WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
           WM +E L ++ + ER++  TF  VP  HY+EI++LL +HA D+IP    +R+LI+D+ D 
Sbjct: 65  WMDVEKLEQMRDEERKEE-TFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKDLWDT 123

Query: 135 RLHKIETNLEKF 146
           R+ K+  + + F
Sbjct: 124 RMAKLRVSADSF 135

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Mus musculus (taxid: 10090)

>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2 OS=Homo sapiens GN=GINS2 PE=1 SV=1

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 2/132 (1%)

Query: 16  EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
           EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct: 5   EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64

Query: 76  WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
           WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D+ D 
Sbjct: 65  WMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123

Query: 135 RLHKIETNLEKF 146
           R+ K+  + + F
Sbjct: 124 RIAKLRVSADSF 135

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2 OS=Xenopus laevis GN=gins2 PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 7/139 (5%)

Query: 16  EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
           EVEF+AE E V ++PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC I PP+
Sbjct: 5   EVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVPPE 64

Query: 76  WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
           WM +E L  + + ER +  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D  D 
Sbjct: 65  WMDVEKLEAIRDQERREE-TFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKDTWDT 123

Query: 135 RLHKIETNLEKFSATSAVK 153
           R+ K+     + SA S VK
Sbjct: 124 RIAKL-----RLSADSFVK 137

The GINS complex plays an essential role in the initiation of DNA replication.

Xenopus laevis (taxid: 8355)

>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein PSF2 OS=Brugia malayi GN=BMBAC01P19.06 PE=3 SV=1

 Score =  122 bits (306), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 12  FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
            +P + EF+A +E ++I P   +D L+ ICGD GPF   +P+ VPLW+A  L+KR KCTI
Sbjct: 1   MTPEQCEFIAGNEWIQINPQFNLDELHLICGDIGPFEAGMPIWVPLWIAVTLRKRRKCTI 60

Query: 72  RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
            PPQW+ +E L K++  E      F  VP  Y+EI+ +   +A++D+PD  M+R  ++D+
Sbjct: 61  IPPQWLCVEELKKLVIAE-SGTNAFGQVPRFYLEIAHMFVQYAKEDLPDSDMIRVYVQDL 119

Query: 132 RDVRLHKIETNLEKF 146
            D R  K+  +  KF
Sbjct: 120 WDKRSAKLNNSSTKF 134

The GINS complex plays an essential role in the initiation of DNA replication.

Brugia malayi (taxid: 6279)

>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum GN=gins2 PE=3 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 83/131 (63%)

Query: 14  PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
           P ++EF+AED  + +VPN +M+ L F+ G++GPF P  P+++PLWLA +LKK+ KCTI P
Sbjct: 8   PSQIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITP 67

Query: 74  PQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRD 133
           P WM+   L    + E + +  F  +P ++ EIS LL  +  DDI DI  +R L  DI  
Sbjct: 68  PDWMTYNKLKAKFQEENKIKDGFIELPENFDEISSLLLANCPDDIKDINKIRILKGDILS 127

Query: 134 VRLHKIETNLE 144
            R  K+E +L+
Sbjct: 128 RREKKLEESLK 138

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PSF2 PE=3 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 83/133 (62%)

Query: 12  FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
            +P E+ F+AE + + IVP   M  +  I G +GPF P    +VPLWL  +LKK+ KC I
Sbjct: 11  LTPDELAFLAEHDHISIVPLFSMTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCRI 70

Query: 72  RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
            PP+W+S E L   L  E+E+   F+ +P  ++EIS++L D A DD+    ++RSL++DI
Sbjct: 71  VPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISKVLLDIASDDLSQPTLLRSLLKDI 130

Query: 132 RDVRLHKIETNLE 144
           R+VR  KI   L+
Sbjct: 131 REVRQAKIRMGLQ 143

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PSF2 PE=3 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 83/133 (62%)

Query: 12  FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
            +P E+ F+AE + + IVP   M  +  I G +GPF P    +VPLWL  +LKK+ KC I
Sbjct: 11  LTPDELAFLAEHDHISIVPLFSMTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCRI 70

Query: 72  RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
            PP+W+S E L   L  E+E+   F+ +P  ++EIS++L D A DD+    ++RSL++DI
Sbjct: 71  VPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISKVLLDIASDDLSQPTLLRSLLKDI 130

Query: 132 RDVRLHKIETNLE 144
           R+VR  KI   L+
Sbjct: 131 REVRQAKIRMGLQ 143

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein PSF2 OS=Caenorhabditis elegans GN=F31C3.5 PE=3 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 83/131 (63%), Gaps = 2/131 (1%)

Query: 17  VEFMAEDELVEIVPNMRMD-PLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
            EF+A + L+E++P++  D P++ I GD GPF   +P ++P+W A  +K++  C +  PQ
Sbjct: 6   CEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCKVVAPQ 65

Query: 76  WMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVR 135
           WM ++ L K+L  E E +G    +P H+ EIS +L   AR+DI ++  V+SL++DI D R
Sbjct: 66  WMDVDELKKILTSETESQG-LAKLPDHFFEISHMLVRDAREDIFEVEAVKSLVQDIYDRR 124

Query: 136 LHKIETNLEKF 146
             K+ ++  +F
Sbjct: 125 DAKLRSSAIEF 135

The GINS complex plays an essential role in the initiation of DNA replication.

Caenorhabditis elegans (taxid: 6239)

>sp|O94329|PSF2_SCHPO DNA replication complex GINS protein psf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psf2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)

Query: 12  FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
           FSP E+EF+A +E + IVP+  MD L  +        P    +VPLWLA  LKK+    I
Sbjct: 11  FSPEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARI 70

Query: 72  RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
            PP+WM I  L  + + E E+  TF  +PF ++E + LL +   DDI D+  +R ++ DI
Sbjct: 71  VPPEWMEIGKLENIRDDELENE-TFSELPFRWLETAHLLLNFCADDIEDVEDIRRILLDI 129

Query: 132 RDVRLHKIETNLEKFS 147
           R+ R  K  T LE  +
Sbjct: 130 REARQSKARTGLEAIN 145

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation and is required for bir1 localization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
82749767	244	At3g12530-like protein [Boechera stricta	1.0	0.627	0.784	9e-69
15795172	239	unnamed protein product [Arabidopsis tha	1.0	0.640	0.784	2e-68
79399060	210	DNA replication complex GINS protein PSF	1.0	0.728	0.784	3e-68
297834054	210	hypothetical protein ARALYDRAFT_897460 [	1.0	0.728	0.784	5e-68
224109512	227	predicted protein [Populus trichocarpa]	0.986	0.665	0.763	1e-64
449438757	212	PREDICTED: DNA replication complex GINS	1.0	0.721	0.727	2e-64
194697776	211	unknown [Zea mays] gi|195626926|gb|ACG35	1.0	0.725	0.753	2e-63
357126995	212	PREDICTED: DNA replication complex GINS	1.0	0.721	0.753	3e-63
226532182	211	LOC100280623 [Zea mays] gi|195606464|gb|	1.0	0.725	0.753	3e-63
224035015	237	unknown [Zea mays] gi|414888243|tpg|DAA6	1.0	0.645	0.753	3e-63

>gi|82749767|gb|ABB89770.1| At3g12530-like protein [Boechera stricta]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 135/153 (88%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
           +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

Source: Boechera stricta

Species: Boechera stricta

Genus: Boechera

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795172|dbj|BAB03160.1| unnamed protein product [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 135/153 (88%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
           +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79399060|ref|NP_187859.2| DNA replication complex GINS protein PSF2 [Arabidopsis thaliana] gi|37999772|sp|Q9C7A8.2|PSF2_ARATH RecName: Full=DNA replication complex GINS protein PSF2 gi|38603928|gb|AAR24709.1| At3g12530 [Arabidopsis thaliana] gi|58652096|gb|AAW80873.1| At3g12530 [Arabidopsis thaliana] gi|332641686|gb|AEE75207.1| DNA replication complex GINS protein PSF2 [Arabidopsis thaliana]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 135/153 (88%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
           +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834054|ref|XP_002884909.1| hypothetical protein ARALYDRAFT_897460 [Arabidopsis lyrata subsp. lyrata] gi|297330749|gb|EFH61168.1| hypothetical protein ARALYDRAFT_897460 [Arabidopsis lyrata subsp. lyrata]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/153 (78%), Positives = 134/153 (87%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQ+DPH SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1   MAGQTDPHTSLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
           +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109512|ref|XP_002315220.1| predicted protein [Populus trichocarpa] gi|222864260|gb|EEF01391.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 133/152 (87%), Gaps = 1/152 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSD  +SLFS  E+EFMAEDE+VEIVPN+RMD LNFICGD+GPFYPQ+  +VP+WLA
Sbjct: 1   MAGQSDSTMSLFSSEEIEFMAEDEMVEIVPNLRMDSLNFICGDYGPFYPQLAAQVPIWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALKKRGKCTIR PQWMSIENLT+VLE ER D   FQ +PFHY+EISRLLFD AR+DIPD
Sbjct: 61  LALKKRGKCTIRLPQWMSIENLTQVLEAER-DSHAFQPLPFHYVEISRLLFDLAREDIPD 119

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAV 152
           +YMVRSLIEDIRDVR HK+ETNLEKF+A++  
Sbjct: 120 MYMVRSLIEDIRDVRFHKVETNLEKFTASTVT 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438757|ref|XP_004137154.1| PREDICTED: DNA replication complex GINS protein PSF2-like [Cucumis sativus] gi|449528599|ref|XP_004171291.1| PREDICTED: DNA replication complex GINS protein PSF2-like [Cucumis sativus]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 136/154 (88%), Gaps = 1/154 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSDPH++LFS  EVEF+AEDE+VEI+PNMRMD L+ ICGD+GPFYPQI  +VPLWLA
Sbjct: 1   MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALKKRGKC IR P+WMS+E LT++LE ER+ +G+FQ +PFHY+EIS+LLFDHARDD+PD
Sbjct: 61  IALKKRGKCAIRTPEWMSVEKLTQILEAERDSQGSFQILPFHYVEISKLLFDHARDDVPD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKF-SATSAVK 153
           +Y+VRSLIEDIRDVR HK+ET+LE   + TSAVK
Sbjct: 121 MYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVK 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194697776|gb|ACF82972.1| unknown [Zea mays] gi|195626926|gb|ACG35293.1| DNA replication complex GINS protein PSF2 [Zea mays] gi|414888244|tpg|DAA64258.1| TPA: DNA replication complex GINS protein PSF2 [Zea mays]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 130/154 (84%), Gaps = 1/154 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSDPH+S+FSP EVEF+AEDE+VEIVPN+RMD LN ICGDFGPF+PQIP KVPLWLA
Sbjct: 1   MAGQSDPHLSIFSPSEVEFVAEDEIVEIVPNIRMDALNMICGDFGPFFPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALKKR KCTIR P WM+++ LT+VLE ERE    FQ +PFHYIEIS+LLFDHARDDI D
Sbjct: 61  VALKKRSKCTIRTPDWMTVDRLTQVLEAERESPREFQPLPFHYIEISKLLFDHARDDISD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSA-TSAVK 153
            Y+VRSLIEDIRDVR HK+ET LE  S  T AVK
Sbjct: 121 AYLVRSLIEDIRDVRFHKVETGLETISGRTHAVK 154

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126995|ref|XP_003565172.1| PREDICTED: DNA replication complex GINS protein PSF2-like [Brachypodium distachyon]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 132/154 (85%), Gaps = 1/154 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSDPH+SLFSP EVEF+AEDE+VEIVPN+RM+ LN ICGDFGPF+PQI  KVPLWLA
Sbjct: 1   MAGQSDPHLSLFSPSEVEFVAEDEIVEIVPNIRMEALNMICGDFGPFFPQIASKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALK+RGKCTIRPP+WM++E LT+VL+ ERE    FQ +PFHYIEIS+LLFDHARDDI D
Sbjct: 61  VALKRRGKCTIRPPEWMTVERLTQVLDAERESPREFQPLPFHYIEISKLLFDHARDDISD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSA-TSAVK 153
            Y+VRSLIEDIRDVR HK+ET LE  S  T AVK
Sbjct: 121 AYLVRSLIEDIRDVRFHKVETGLETISGRTHAVK 154

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226532182|ref|NP_001147013.1| LOC100280623 [Zea mays] gi|195606464|gb|ACG25062.1| DNA replication complex GINS protein PSF2 [Zea mays]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 130/154 (84%), Gaps = 1/154 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSDPH+S+FSP EVEF+AEDE+VEIVPN+RMD LN ICGDFGPF+PQIP KVPLWLA
Sbjct: 1   MAGQSDPHLSIFSPSEVEFVAEDEIVEIVPNIRMDALNMICGDFGPFFPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALKKR KCTIR P WM+++ LT+VLE ERE    FQ +PFHYIEIS+LLFDHARDDI D
Sbjct: 61  VALKKRSKCTIRTPDWMTVDRLTQVLEAERESPREFQPLPFHYIEISKLLFDHARDDISD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSA-TSAVK 153
            Y+VRSLIEDIRDVR HK+ET LE  S  T AVK
Sbjct: 121 AYLVRSLIEDIRDVRFHKVETGLETISGRTHAVK 154

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224035015|gb|ACN36583.1| unknown [Zea mays] gi|414888243|tpg|DAA64257.1| TPA: hypothetical protein ZEAMMB73_344417 [Zea mays]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 130/154 (84%), Gaps = 1/154 (0%)

Query: 1   MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
           MAGQSDPH+S+FSP EVEF+AEDE+VEIVPN+RMD LN ICGDFGPF+PQIP KVPLWLA
Sbjct: 1   MAGQSDPHLSIFSPSEVEFVAEDEIVEIVPNIRMDALNMICGDFGPFFPQIPTKVPLWLA 60

Query: 61  AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
            ALKKR KCTIR P WM+++ LT+VLE ERE    FQ +PFHYIEIS+LLFDHARDDI D
Sbjct: 61  VALKKRSKCTIRTPDWMTVDRLTQVLEAERESPREFQPLPFHYIEISKLLFDHARDDISD 120

Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSA-TSAVK 153
            Y+VRSLIEDIRDVR HK+ET LE  S  T AVK
Sbjct: 121 AYLVRSLIEDIRDVRFHKVETGLETISGRTHAVK 154

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2101247	210	PSF2 "AT3G12530" [Arabidopsis	1.0	0.728	0.784	2.9e-64
UNIPROTKB|Q9Y248	185	GINS2 "DNA replication complex	0.849	0.702	0.462	1.1e-31
MGI|MGI:1921019	185	Gins2 "GINS complex subunit 2	0.849	0.702	0.484	1.4e-30
RGD|1311055	185	Gins2 "GINS complex subunit 2	0.849	0.702	0.484	1.4e-30
UNIPROTKB|E1BC42	185	GINS2 "DNA replication complex	0.849	0.702	0.469	3.8e-30
UNIPROTKB|E2QU81	185	GINS2 "DNA replication complex	0.849	0.702	0.462	6.2e-30
UNIPROTKB|F1S6I3	185	GINS2 "DNA replication complex	0.849	0.702	0.469	3.4e-29
ZFIN|ZDB-GENE-050419-19	182	gins2 "GINS complex subunit 2"	0.862	0.725	0.455	4.4e-29
UNIPROTKB|Q7ZT46	185	gins2 "DNA replication complex	0.849	0.702	0.446	2.4e-28
DICTYBASE|DDB_G0293564	223	gins2 "GINS complex subunit 2"	0.856	0.587	0.427	1.9e-26

TAIR|locus:2101247 PSF2 "AT3G12530" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 120/153 (78%), Positives = 135/153 (88%)

Query:     1 MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
             MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct:     1 MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query:    61 AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
              ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct:    61 VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query:   121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
             +YMVRSL+EDIRDVRLHK+ETNL  F  TSAVK
Sbjct:   121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q9Y248 GINS2 "DNA replication complex GINS protein PSF2" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 61/132 (46%), Positives = 92/132 (69%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct:     5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D+ D 
Sbjct:    65 WMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RIAKLRVSADSF 135

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1921019 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Mus musculus (taxid:10090)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/132 (48%), Positives = 91/132 (68%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV VPLWLA  LK+R KC + PP+
Sbjct:     5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L ++ + ER++  TF  VP  HY+EI++LL +HA D+IP    +R+LI+D+ D 
Sbjct:    65 WMDVEKLEQMRDEERKEE-TFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKDLWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RMAKLRVSADSF 135

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1311055 Gins2 "GINS complex subunit 2 (Psf2 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/132 (48%), Positives = 91/132 (68%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV VPLWLA  LK+R KC + PP+
Sbjct:     5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L ++ + ER++  TF  VP  HY+EI++LL +HA D+IP    +R+LI+D+ D 
Sbjct:    65 WMDVEKLEQMRDEERKEE-TFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKDLWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RMAKLRVSADSF 135

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E1BC42 GINS2 "DNA replication complex GINS protein PSF2" [Bos taurus (taxid:9913)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 62/132 (46%), Positives = 91/132 (68%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct:     5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVQVPLWLAVNLKQRQKCRLLPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R+LI+D+ D 
Sbjct:    65 WMDVEKLEKIRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLIKDVWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K   + + F
Sbjct:   124 RIAKFRVSADSF 135

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QU81 GINS2 "DNA replication complex GINS protein PSF2" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/132 (46%), Positives = 92/132 (69%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct:     5 EVEFLAEKELVTIIPNFSVDKMYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLIPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D+ D 
Sbjct:    65 WMDVEKLEKIRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDVWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RIAKLRVSADSF 135

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|F1S6I3 GINS2 "DNA replication complex GINS protein PSF2" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 62/132 (46%), Positives = 89/132 (67%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC +  P+
Sbjct:     5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVQVPLWLAINLKQRQKCRLLAPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L K+ + ER++  TF   P  HY E+++LL +HA D+IP    +R+LI+D+ D 
Sbjct:    65 WMDVEKLEKMRDHERKE-DTFTPAPNPHYTELTKLLLNHASDNIPKADEIRTLIKDVWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RVAKLRVSADSF 135

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

ZFIN|ZDB-GENE-050419-19 gins2 "GINS complex subunit 2" [Danio rerio (taxid:7955)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 61/134 (45%), Positives = 91/134 (67%)

Query:    14 PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
             P EVEF+AE E+V+I+PN  +D +  I GD GPF P +PV+VP+WLA  LK+R KC I P
Sbjct:     3 PAEVEFLAEKEMVKIIPNFSLDKIYLIGGDLGPFNPGLPVEVPVWLALNLKQRQKCRIVP 62

Query:    74 PQWMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIR 132
             P+WM  + L  + E ER+   TF  +P  +Y+E+++LL +HA D+IP    +R+L++DI 
Sbjct:    63 PEWMDTDKLEDIREQERK-LDTFTPIPNPYYMELTKLLLNHAADNIPKADEIRTLVKDIW 121

Query:   133 DVRLHKIETNLEKF 146
             D R+ K+  + + F
Sbjct:   122 DTRMAKLRLSADSF 135

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q7ZT46 gins2 "DNA replication complex GINS protein PSF2" [Xenopus laevis (taxid:8355)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/132 (44%), Positives = 88/132 (66%)

Query:    16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
             EVEF+AE E V ++PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC I PP+
Sbjct:     5 EVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVPPE 64

Query:    76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
             WM +E L  + + ER +  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D  D 
Sbjct:    65 WMDVEKLEAIRDQERREE-TFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKDTWDT 123

Query:   135 RLHKIETNLEKF 146
             R+ K+  + + F
Sbjct:   124 RIAKLRLSADSF 135

GO:0000811 "GINS complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=IMP

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=IDA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IDA

DICTYBASE|DDB_G0293564 gins2 "GINS complex subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 56/131 (42%), Positives = 83/131 (63%)

Query:    14 PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
             P ++EF+AED  + +VPN +M+ L F+ G++GPF P  P+++PLWLA +LKK+ KCTI P
Sbjct:     8 PSQIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITP 67

Query:    74 PQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRD 133
             P WM+   L    + E + +  F  +P ++ EIS LL  +  DDI DI  +R L  DI  
Sbjct:    68 PDWMTYNKLKAKFQEENKIKDGFIELPENFDEISSLLLANCPDDIKDINKIRILKGDILS 127

Query:   134 VRLHKIETNLE 144
              R  K+E +L+
Sbjct:   128 RREKKLEESLK 138

GO:0006260 "DNA replication" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=ISS

GO:0000811 "GINS complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7A8	PSF2_ARATH	No assigned EC number	0.7843	1.0	0.7285	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
cd11712	119	cd11712, GINS_A_psf2, Alpha-helical domain of GINS	2e-36
COG5093	185	COG5093, COG5093, Uncharacterized conserved protei	3e-30
pfam05916	106	pfam05916, Sld5, GINS complex protein	1e-17
PTZ00362	479	PTZ00362, PTZ00362, hypothetical protein; Provisio	4e-07

>gnl|CDD|212550 cd11712, GINS_A_psf2, Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)

 Score =  121 bits (305), Expect = 2e-36
 Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 1/87 (1%)

Query: 66  RGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVR 125
           R KC I PP W+++E L ++LE E++   TF  +PFHY+EI++LL + A DDIPD   +R
Sbjct: 1   RNKCRIVPPDWLTVEYLKEILEEEKKS-ETFSPLPFHYLEIAKLLLEVASDDIPDADEIR 59

Query: 126 SLIEDIRDVRLHKIETNLEKFSATSAV 152
           SL+EDIRDVR  K+ + LEK   +  V
Sbjct: 60  SLVEDIRDVRQAKLRSGLEKLLGSGEV 86

Psf2 is a component of GINS tetrameric protein complex and has been found to play important roles in normal eye development in Xenopus laevis. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|227424 COG5093, COG5093, Uncharacterized conserved protein [Function unknown]

 Score =  107 bits (269), Expect = 3e-30
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)

Query: 12  FSPPEVEFMAEDELVEIVPNMRMDPLNFI-CGDFGPFYPQIPVKVPLWLAAALKKRGKCT 70
           FSP E+ F+A +EL+EI P   +  L  +    + P  P    +VPLW A  LKK+  C 
Sbjct: 11  FSPEEILFIAYNELIEIEPMTTIPQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCK 70

Query: 71  IRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIED 130
           I  P W+ +E+L   ++ E E    F  +P +++ ++  L +   DD+ DI   R ++ED
Sbjct: 71  IVLPSWLQLESLKMSIDVEIEKADEFSELPPYWLPLATELLNENCDDVEDIEESRMIVED 130

Query: 131 IRDVRLHKIETNLE 144
           IR++R  K    L+
Sbjct: 131 IREIRQAKTLKGLK 144

Length = 185

>gnl|CDD|218810 pfam05916, Sld5, GINS complex protein

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 53  VKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGT--FQAVPFHYIEISRLL 110
            ++PLWLA  L +R    I  P  +S+E L  +    +          +P ++ E++ LL
Sbjct: 1   PELPLWLAEELVERVLVEIEAPDELSLEVLNALKAEPKNVDTKLQLSKLPPYFYELAELL 60

Query: 111 FDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATS 150
            +  R         + L+ +   +RL KIE      +  +
Sbjct: 61  LELLR--------NKRLLREYLRIRLRKIEKLAWHLAGGN 92

The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase. Length = 106

>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 56  PLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYI-EISRLLFDH- 113
           P+++A  L   G  T+  P W  I+NL  + E E ED+     +P  Y  EIS +  ++ 
Sbjct: 320 PIYIAKELSHFGLVTVEFPFWFYIKNLKNIYEREFEDQNELTDLPSPYFFEISSMFLENN 379

Query: 114 --ARDDIPDI--------YM--VRSLIEDIRDVRLHKIETNLEKFSATSAV 152
              +    +         Y+  V  L+EDIR  RL KI  +LE     S++
Sbjct: 380 IFKKVTPIETIGQRTVYKYISKVAGLVEDIRYKRLKKIMNHLENQDVHSSI 430

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG4071	187	consensus Uncharacterized conserved protein [Funct	100.0
COG5093	185	Uncharacterized conserved protein [Function unknow	100.0
PTZ00362	479	hypothetical protein; Provisional	100.0
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	99.77
KOG1106	177	consensus Uncharacterized conserved protein [Funct	97.83
COG5138	168	Uncharacterized conserved protein [Function unknow	95.97
COG1711	223	DNA replication initiation complex subunit, GINS f	89.97

>KOG4071 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-54  Score=343.86  Aligned_cols=139  Identities=52%  Similarity=1.008  Sum_probs=136.9

Q ss_pred             CCCChhhhhhhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHH
Q 048544           10 SLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGE   89 (153)
Q Consensus        10 ~~~~p~E~eFlae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E   89 (153)
                      .+|+|+|++|+|++++|+|+||+++++++||+||+|||+||.|+.||||+|++||||++|+|+||.||+++.|+++++.|
T Consensus         1 ~~~~peeiefia~~eli~I~P~~S~~~l~li~~d~gp~~p~~~~rVpLWlAllLKkq~kc~Iv~P~wm~~~~L~~i~d~E   80 (187)
T KOG4071|consen    1 MAMSPEEIEFIAENELIEIIPNISMDQLHLISGDIGPFNPGVPCRVPLWLALLLKKQNKCRIVPPEWMDVDELEKIRDVE   80 (187)
T ss_pred             CCCCHHHHHHHhcccceeeccCCcchhhhhhcCCCcccCCCCcceehHHHHHHHhhccCceEeCcccccHHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCcCCcccCCchHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048544           90 REDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSAT  149 (153)
Q Consensus        90 ~~~~~~f~~LP~~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~~~~~~  149 (153)
                      +.++ .|++||+||+|+|++|+++|.|||++++++|++|+||||+|++|+|+|++.|+++
T Consensus        81 ~e~~-tfs~lp~~~~ela~lL~n~a~Ddi~~~eeiR~lV~DI~d~R~aKlr~s~~~f~~~  139 (187)
T KOG4071|consen   81 KESE-TFSKLPFYYFELATLLLNFARDDIPDIEEIRTLVKDIRDIRLAKLRTSLDSFNRQ  139 (187)
T ss_pred             hccc-ccccCChHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhHHHHhhH
Confidence            9995 9999999999999999999999999999999999999999999999999999998

>COG5093 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7.8e-42  Score=265.53  Aligned_cols=141  Identities=32%  Similarity=0.578  Sum_probs=136.8

Q ss_pred             CCCChhhhhhhhcCceeEEeeCCCCCccceec-cccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHH
Q 048544           10 SLFSPPEVEFMAEDELVEIVPNMRMDPLNFIC-GDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEG   88 (153)
Q Consensus        10 ~~~~p~E~eFlae~e~i~IiP~f~~~~~~lI~-g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~   88 (153)
                      .+|||+|++|+|++|+|+|+|+.+++.+.|++ .+|.|+.|...+.||||+|+.|||+++|+|++|.||+.+.|+..++.
T Consensus         9 ~~fSPEEi~fia~nE~i~I~P~~t~~qlrL~~~~t~p~m~p~~~~rvpLw~ALlLKkqn~c~Iv~P~wl~~~~L~~~i~~   88 (185)
T COG5093           9 MAFSPEEILFIAYNELIEIEPMTTIPQLRLLERATYPPMMPLDIARVPLWAALLLKKQNMCKIVLPSWLQLESLKMSIDV   88 (185)
T ss_pred             hcCCHHHHHHHhcccceeeecccccchhhhhhhhcCCCCCCchhhhhHHHHHHHHHhcccccccChhHhhHHHHHhhhhH
Confidence            48999999999999999999999999999999 59999999999999999999999999999999999999999999999


Q ss_pred             HhhCcCCcccCCchHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 048544           89 EREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATS  150 (153)
Q Consensus        89 E~~~~~~f~~LP~~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~~~~~~~  150 (153)
                      |+..++.|+.|||||++.|+.||+.|.||+.+.+++|..|+||+++|++|.++|++.+++.+
T Consensus        89 e~~~~d~fSelp~~wl~lA~~Lln~~~ddvediee~r~iv~dirEiRq~K~lkGlk~lne~~  150 (185)
T COG5093          89 EIEKADEFSELPPYWLPLATELLNENCDDVEDIEESRMIVEDIREIRQAKTLKGLKCLNEKA  150 (185)
T ss_pred             HHhcccccccCCchHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence            98888999999999999999999999999999999999999999999999999999999874

>PTZ00362 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-38  Score=278.63  Aligned_cols=129  Identities=32%  Similarity=0.467  Sum_probs=113.4

Q ss_pred             hcCceeEEeeCCCCCcc--ceecc-ccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCcCCcc
Q 048544           21 AEDELVEIVPNMRMDPL--NFICG-DFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQ   97 (153)
Q Consensus        21 ae~e~i~IiP~f~~~~~--~lI~g-~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~~~f~   97 (153)
                      |-+|+|-+--....+.+  .+|+| ++|||+||.|++||||||++||++++|+|+||.||++++|++++++|.++.+.|+
T Consensus       282 al~eLvVvKalvDip~~~L~lI~G~digpfkag~~~~VPLWLAi~LKq~~KC~IvpP~Wm~ie~Lk~I~eeE~~~~~~Ft  361 (479)
T PTZ00362        282 ALDELVVVKALVDIPYIDLSEIEGFDFKEMKSGERQWLPIYIAKELSHFGLVTVEFPFWFYIKNLKNIYEREFEDQNELT  361 (479)
T ss_pred             HhcceEEEEEecCCCCCcceeeeccccCCcCCCCeeEEeeeehhhhcccCceEEeCcccccHHHHHHHHHHHhhCccccc
Confidence            55677766544444432  37999 9999999999999999999999999999999999999999999999955568999


Q ss_pred             cCCc-hHHHHHHHHHhh-------hcCCCcC------HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048544           98 AVPF-HYIEISRLLFDH-------ARDDIPD------IYMVRSLIEDIRDVRLHKIETNLEKFSAT  149 (153)
Q Consensus        98 ~LP~-~y~Eia~lLl~~-------a~dDi~~------~~~ir~Li~DI~~iR~~Klr~gl~~~~~~  149 (153)
                      +||+ ||+|||++||++       |+||+++      +++||++|+|||++|++|+|+|++.++++
T Consensus       362 ~LP~p~y~EIa~lLl~~~~F~~~~a~edi~~~d~~~~~~kVR~LIeDIrd~R~~KIr~~Le~~~~~  427 (479)
T PTZ00362        362 DLPSPYFFEISSMFLENNIFKKVTPIETIGQRTVYKYISKVAGLVEDIRYKRLKKIMNHLENQDVH  427 (479)
T ss_pred             cCCchhHHHHHHHHHhcccccccCChhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9996 999999999999       6677665      69999999999999999999999999874

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=99.77  E-value=2.6e-18  Score=121.71  Aligned_cols=87  Identities=32%  Similarity=0.587  Sum_probs=77.6

Q ss_pred             chhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCc--CCcccCCchHHHHHHHHHhhhcCCCcCHHHHHHHHHH
Q 048544           53 VKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDR--GTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIED  130 (153)
Q Consensus        53 ~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~--~~f~~LP~~y~Eia~lLl~~a~dDi~~~~~ir~Li~D  130 (153)
                      ++||+|+|..|++++.|+|++|+|++++.++.+..+|+.+.  ..|++||+||++.+.+|++.+       +.++.++.+
T Consensus         1 v~lP~w~a~~L~~~~~~~i~~p~~~~~~~~~~l~~e~~~~~~~~~l~~l~~~f~~~~~~l~~~~-------~~ik~~l~~   73 (108)
T PF05916_consen    1 VELPLWLAKELKKRNLVEIQPPDWFSIEYLNALEAEEKNNSNKVDLSKLPPYFYELGEMLLELL-------ERIKRLLRD   73 (108)
T ss_dssp             EEEEHHHHHHHHHTTSEEEE-TCCHCHHHHHHHHHHHCCCS-HCSCCTSSTTHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred             CcCCcchHHHHHHcCCeeecCcHhhhHHHHHHHHhhhccccchhhhhcCChHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            57999999999999999999999999999666666665543  489999999999999999999       789999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 048544          131 IRDVRLHKIETNLEKF  146 (153)
Q Consensus       131 I~~iR~~Klr~gl~~~  146 (153)
                      ++..|..||+++....
T Consensus        74 ~~~~R~~KI~~~~~~~   89 (108)
T PF05916_consen   74 YLRIRLKKILSLAWHL   89 (108)
T ss_dssp             HHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998777

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>KOG1106 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=8.9e-05  Score=59.23  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             hhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCcCCccc
Q 048544           19 FMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQA   98 (153)
Q Consensus        19 Flae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~~~f~~   98 (153)
                      -+|..+.|...=..++..+-+++..--+..+|..+++|+|||-.|+-.+-..|.+|+-++.. .++.++.+-+. -.+..
T Consensus        20 Ila~~~ki~ct~e~~i~~lgfl~~~~~~~~~g~kVelP~wl~~~L~~~~~~si~lP~~fs~~-~rn~i~Adp~~-vdL~s   97 (177)
T KOG1106|consen   20 ILASGEKIPCTFETKIPNLGFLQAPPRELPAGRKVELPYWLAEELAINQFVSILLPDIFSEK-VRNVIKADPNK-VDLRS   97 (177)
T ss_pred             HHhcCCcccceeeecCCCCCccCCCcccCCCCCcccchHHHHHHHhhccceeecCchHHHHH-HHHHHhcCcce-eeccc
Confidence            36677776655555666666666555566788999999999999999999999999998765 55666666554 36788


Q ss_pred             CCchHHHHHHHHHhhhcCCCcC
Q 048544           99 VPFHYIEISRLLFDHARDDIPD  120 (153)
Q Consensus        99 LP~~y~Eia~lLl~~a~dDi~~  120 (153)
                      +-+||++.+..|+-.-+++-.+
T Consensus        98 ~~phFY~fg~kl~~l~s~~~l~  119 (177)
T KOG1106|consen   98 LCPHFYEFGMKLLPLDSGENLG  119 (177)
T ss_pred             cccHHHHHHHHHhhcccCcchh
Confidence            8999999999999887765543

>COG5138 Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.019  Score=44.99  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             hhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCc--CCc
Q 048544           19 FMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDR--GTF   96 (153)
Q Consensus        19 Flae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~--~~f   96 (153)
                      -++++..|...=..+++.+-+++..=-|.--|.++++|+|||-.|-...-..+.+|+.++-.-+.++.    .++  -.+
T Consensus         9 iL~~~s~ipctf~~~IpglG~l~~~gr~~p~n~kvelP~wLa~~Lainsfv~~l~p~~fs~~v~naik----a~P~tvdl   84 (168)
T COG5138           9 ILLGESRIPCTFKHKIPGLGFLGPRGRILPENRKVELPYWLASFLAINSFVCELGPGFFSESVLNAIK----AKPSTVDL   84 (168)
T ss_pred             HhcCCCccceeeEeecCCcccCCCCCcccCCCCeeechHHHHHHHHHhhhHHhcCcchHHHHHHHHHh----cCCceeeh
Confidence            46777777666667777777766444466677999999999999998867778999998866555543    333  234


Q ss_pred             ccCCchHHHHHHHHHh
Q 048544           97 QAVPFHYIEISRLLFD  112 (153)
Q Consensus        97 ~~LP~~y~Eia~lLl~  112 (153)
                      -.+-.|||-.|...+-
T Consensus        85 rsI~~hff~lA~K~~m  100 (168)
T COG5138          85 RSICPHFFYLAEKYAM  100 (168)
T ss_pred             hhcchHHHHHHHHHHH
Confidence            4666677777654433

>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]

Probab=89.97  E-value=1.1  Score=37.18  Aligned_cols=65  Identities=26%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHhhCcCCcccCCchHHHHHHHHHh----hh-----cCCCcC------HHHHHHHHHHHHHHHHHHHHH
Q 048544           77 MSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFD----HA-----RDDIPD------IYMVRSLIEDIRDVRLHKIET  141 (153)
Q Consensus        77 l~ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~----~a-----~dDi~~------~~~ir~Li~DI~~iR~~Klr~  141 (153)
                      |.++.|++++..|+.. +.++.++..|++-.+-.++    .+     ++|+..      .+.+.+..+-|.++|..|+.+
T Consensus         1 m~i~eLR~~~~kErS~-~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~   79 (223)
T COG1711           1 MDIEELRRALYKERSQ-DGLTEIDEDFYRDVRSFIKELEDEAGRAEEARDIEKYLLTDRIETAKSDARSIFQRRYGKIVS   79 (223)
T ss_pred             CCHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999987 7899999755555444443    22     234433      236667778888889999875


Q ss_pred             H
Q 048544          142 N  142 (153)
Q Consensus       142 g  142 (153)
                      .
T Consensus        80 ~   80 (223)
T COG1711          80 R   80 (223)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
2q9q_A	191	The Crystal Structure Of Full Length Human Gins Com		3e-31
2e9x_B	185	The Crystal Structure Of Human Gins Core Complex Le		3e-31
2eho_C	186	Crystal Structure Of Human Gins Complex Length = 18		2e-29

>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex Length = 191

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
Query: 7   PHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKR 66
           P  S     EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R
Sbjct: 2   PLGSNMDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQR 61
Query: 67  GKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVR 125
            KC + PP+WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R
Sbjct: 62  QKCRLLPPEWMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIR 120
Query: 126 SLIEDIRDVRLHKIETNLEKF 146
           +L++D+ D R+ K+  + + F
Sbjct: 121 TLVKDMWDTRIAKLRVSADSF 141

>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex Length = 185

Iteration: 1
 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
Query: 16  EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
           EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct: 5   EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64
Query: 76  WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
           WM +E L K+ + ER++  TF  +P  +Y+E+++LL +HA D+IP    +R+L++D+ D 
Sbjct: 65  WMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123
Query: 135 RLHKIETNLEKF 146
           R+ K+  + + F
Sbjct: 124 RIAKLRVSADSF 135

>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex Length = 186

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 16  EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
           EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + PP+
Sbjct: 6   EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 65
Query: 76  WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
           W  +E L K  + ER++  TF   P  +Y E+++LL +HA D+IP    +R+L++D  D 
Sbjct: 66  WXDVEKLEKXRDHERKEE-TFTPXPSPYYXELTKLLLNHASDNIPKADEIRTLVKDXWDT 124
Query: 135 RLHKIETNLEKF 146
           R+ K+  + + F
Sbjct: 125 RIAKLRVSADSF 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	3e-58
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A* Length = 185

 Score =  178 bits (453), Expect = 3e-58
 Identities = 58/138 (42%), Positives = 88/138 (63%)

Query: 13  SPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIR 72
              EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC + 
Sbjct: 2   DAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLL 61

Query: 73  PPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIR 132
           PP+WM +E L K+ + ER++         +Y+E+++LL +HA D+IP    +R+L++D+ 
Sbjct: 62  PPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMW 121

Query: 133 DVRLHKIETNLEKFSATS 150
           D R+ K+  + + F    
Sbjct: 122 DTRIAKLRVSADSFVRQQ 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 44/160 (27%)

Query: 5   SDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA--AA 62
            D H    +P EV+      L+    + R   L        P   ++    P  L+  A 
Sbjct: 291 LDHHSMTLTPDEVK-----SLLLKYLDCRPQDL--------P--REVLTTNPRRLSIIAE 335

Query: 63  LKKRGKCTIRPPQWMSIENLTKVLEG------EREDRGTFQA---------VPFHYIEIS 107
             + G  T    + ++ + LT ++E         E R  F           +P   + + 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL- 394

Query: 108 RLLFDHARDDIPDI---YMVRSLIEDIRD-----VRLHKI 139
            + FD  + D+  +       SL+E  +      + +  I
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
2e9x_B	185	DNA replication complex GINS protein PSF2; eukaryo	100.0
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	99.08
2e9x_C	219	GINS complex subunit 3; eukaryotic DNA replication	98.94
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	97.58

>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*

Probab=100.00  E-value=3.6e-58  Score=365.57  Aligned_cols=136  Identities=45%  Similarity=0.905  Sum_probs=133.4

Q ss_pred             CChhhhhhhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhh
Q 048544           12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGERE   91 (153)
Q Consensus        12 ~~p~E~eFlae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~   91 (153)
                      |||+|++|+||+++|+|+|||++++++||+|+||||+||.+++||||||++||++++|+|+||+||++++|++++++|++
T Consensus         1 ~~p~EieFlae~e~I~IvP~f~~~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~~   80 (185)
T 2e9x_B            1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERK   80 (185)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCBCCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCeEEEEeCCCCCceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHhc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCcccCCc-hHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048544           92 DRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSA  148 (153)
Q Consensus        92 ~~~~f~~LP~-~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~~~~~  148 (153)
                      + +.|++||+ ||+|+|++||++|+||++++++||+||+|||++|++|+|+|++.+++
T Consensus        81 ~-~~f~~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~  137 (185)
T 2e9x_B           81 E-ETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVR  137 (185)
T ss_dssp             C-SSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cccccCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8 68999999 69999999999999999999999999999999999999999999975

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=99.08  E-value=3.7e-10  Score=88.53  Aligned_cols=101  Identities=22%  Similarity=0.269  Sum_probs=82.1

Q ss_pred             cccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCcCCcccCCchHHHHHHHHHhhhc------
Q 048544           42 GDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHAR------  115 (153)
Q Consensus        42 g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~~a~------  115 (153)
                      -+||+.+.|..+.||.|+|..|...|.|.|.--.=..++.|.+++.+|+++ ..+++||.+|+.-++..+....      
T Consensus        21 ~~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~-~~L~~LP~dFY~rvr~yI~~Le~ei~~~   99 (171)
T 3anw_B           21 KPFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERES-EPLTLLPEGLYERAEFYAYYLENYVRLN   99 (171)
T ss_dssp             SCCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTS-SSCCCCCTTHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhcc-CccccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999999999999999999721155688999999999997 6899999999999998876432      


Q ss_pred             --CCCcC-------HHHHHHHHHHHHHHHHHHHHHHH
Q 048544          116 --DDIPD-------IYMVRSLIEDIRDVRLHKIETNL  143 (153)
Q Consensus       116 --dDi~~-------~~~ir~Li~DI~~iR~~Klr~gl  143 (153)
                        .|+..       ...++..+++|.+.|..||-+-+
T Consensus       100 ~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la  136 (171)
T 3anw_B          100 PRESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAV  136 (171)
T ss_dssp             C-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              24322       46777888899999999998766

>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*

Probab=98.94  E-value=1.1e-08  Score=82.68  Aligned_cols=122  Identities=16%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             hhhhcCceeEEeeCCCCCccc--eecc---cc-cc-CCCCCcchhhHHHHHHh--cccCCceEeCCCCCCHHHHHHHHHH
Q 048544           18 EFMAEDELVEIVPNMRMDPLN--FICG---DF-GP-FYPQIPVKVPLWLAAAL--KKRGKCTIRPPQWMSIENLTKVLEG   88 (153)
Q Consensus        18 eFlae~e~i~IiP~f~~~~~~--lI~g---~~-GP-F~p~~~~~VPLWlAl~L--kk~~~C~I~pP~Wl~ve~L~~~l~~   88 (153)
                      .+||++|.|..+.+...+.+.  ++.+   .- .. ..+|.++++|+|||..|  .+++.|+|..|+-++....+. ++.
T Consensus        27 dILa~~ekVpC~f~~~~~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~~-L~A  105 (219)
T 2e9x_C           27 DILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTV-FSA  105 (219)
T ss_dssp             HHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHHH-HHH
T ss_pred             HHHhcCCeeeeEEeecCCCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHHH-Hhc
Confidence            679999999999999999987  6666   34 34 88999999999999999  999999999999999875554 555


Q ss_pred             HhhCcCCcccCCchHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 048544           89 EREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLE  144 (153)
Q Consensus        89 E~~~~~~f~~LP~~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~  144 (153)
                      +-.. -.+..+.+||++.+..|+..  +.. +..++...+.+....|..+|.....
T Consensus       106 dp~~-VdL~~~~p~fY~lG~~L~~l--~~~-ed~~L~~~L~~tf~~R~~~I~d~a~  157 (219)
T 2e9x_C          106 DPNV-VDLHKMGPHFYGFGSQLLHF--DSP-ENADISQSLLQTFIGRFRRIMDSSQ  157 (219)
T ss_dssp             CGGG-SCTTTSCSSHHHHHHHGGGG--CCT-THHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcE-EecccCCchHHHHHHHHHhc--ccc-chHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5333 35788889999999998876  222 2246666677777788888876654

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=97.58  E-value=0.0001  Score=57.89  Aligned_cols=66  Identities=23%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             CCHHHHHHHHHHHhhCcCCcccCCchHHHHHHHHHhhhcCC--------C--c------CHHHHHHHHHHHHHHHHHHHH
Q 048544           77 MSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDD--------I--P------DIYMVRSLIEDIRDVRLHKIE  140 (153)
Q Consensus        77 l~ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~~a~dD--------i--~------~~~~ir~Li~DI~~iR~~Klr  140 (153)
                      |+++.|.+++.+|+++ ..++++|..|++-++-++....+.        .  .      +...++.++++|.++|..||-
T Consensus         1 mdi~eL~~il~~Er~s-~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv   79 (188)
T 3anw_A            1 MDIVKLRELLEAELSS-TDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIV   79 (188)
T ss_dssp             CCHHHHHHHHHHHHTC-SSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcc-CcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999998 689999987777777776643221        1  1      234588899999999999998


Q ss_pred             HHH
Q 048544          141 TNL  143 (153)
Q Consensus       141 ~gl  143 (153)
                      +..
T Consensus        80 ~~a   82 (188)
T 3anw_A           80 DLA   82 (188)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d2e9xb1	112	a.278.1.2 (B:62-173) DNA replication complex GINS	2e-29
d2e9xb2	61	d.344.1.2 (B:1-61) DNA replication complex GINS pr	6e-28

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 2e-29
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 73  PPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIR 132
           PP+WM +E L K+ + ER++         +Y+E+++LL +HA D+IP    +R+L++D+ 
Sbjct: 1   PPEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMW 60

Query: 133 DVRLHKIETNLEKFSATS 150
           D R+ K+  + + F    
Sbjct: 61  DTRIAKLRVSADSFVRQQ 78

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (240), Expect = 6e-28
 Identities = 33/59 (55%), Positives = 41/59 (69%)

Query: 13 SPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
             EVEF+AE ELV I+PN  +D +  I GD GPF P +PV+VPLWLA  LK+R KC +
Sbjct: 2  DAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d2e9xb2	61	DNA replication complex GINS protein PSF2 {Human (	99.97
d2e9xb1	112	DNA replication complex GINS protein PSF2 {Human (	99.95
d2e9xc2	87	GINS complex subunit 3, PSF3 {Human (Homo sapiens)	97.18

>d2e9xb2 d.344.1.2 (B:1-61) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF2 N-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-33  Score=186.64  Aligned_cols=61  Identities=54%  Similarity=1.034  Sum_probs=60.0

Q ss_pred             CChhhhhhhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEe
Q 048544           12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIR   72 (153)
Q Consensus        12 ~~p~E~eFlae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~   72 (153)
                      |+|+|++|+||||+|+|+|||++++++||+|+||||+|+.|++||||+|++||||++|+|+
T Consensus         1 m~P~E~eFlae~e~v~IvP~~~~~~~~li~g~~gpf~p~~p~~VPLWlAl~LK~q~kC~IV   61 (61)
T d2e9xb2           1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLL   61 (61)
T ss_dssp             CCHHHHHHHHTTSEEEEEESSCBCCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEEC
T ss_pred             CCHHHhhhhhcCCeEEEEcCcccCceEeeccccCCcCCCCccccHHHHHHHHhccCceeEC
Confidence            6899999999999999999999999999999999999999999999999999999999996

>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF2 C-terminal domain-like
domain: DNA replication complex GINS protein PSF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-28  Score=178.77  Aligned_cols=76  Identities=37%  Similarity=0.790  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhCcCCcccCCc-hHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048544           73 PPQWMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSAT  149 (153)
Q Consensus        73 pP~Wl~ve~L~~~l~~E~~~~~~f~~LP~-~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~~~~~~  149 (153)
                      ||+||++++|++++++|+++ +.|++||+ ||+|||++||++|+||++++++||+||+|||++|++|+|+|++.|+++
T Consensus         1 PP~Wl~ve~L~~~~~~E~~~-~~f~~lP~~~~~Eia~~ll~~a~ddi~~~~~vr~Lv~DI~~vR~~Klr~~~~~l~~~   77 (112)
T d2e9xb1           1 PPEWMDVEKLEKMRDHERKE-ETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVRQ   77 (112)
T ss_dssp             CCTTCCHHHHHHHHHHHHHC-SSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCccccHHHHHHHHHHHhcc-cccccCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999999999999999998 79999995 999999999999999999999999999999999999999999999654

>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: PSF3 N-terminal domain-like
domain: GINS complex subunit 3, PSF3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00017  Score=48.99  Aligned_cols=51  Identities=20%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             hhhhcCceeEEeeCCCCCccc--eecccc-----ccCCCCCcchhhHHHHHHhcccCC
Q 048544           18 EFMAEDELVEIVPNMRMDPLN--FICGDF-----GPFYPQIPVKVPLWLAAALKKRGK   68 (153)
Q Consensus        18 eFlae~e~i~IiP~f~~~~~~--lI~g~~-----GPF~p~~~~~VPLWlAl~Lkk~~~   68 (153)
                      .+||++|.|...=+...+++-  ++.++-     +...+|.++++|||||..|-.|++
T Consensus        24 DILa~~EkvPc~f~~~~p~LG~~~Ld~~~~~~~~~~i~~GskveLPLWLA~~L~~r~r   81 (87)
T d2e9xc2          24 DILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKR   81 (87)
T ss_dssp             HHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSS
T ss_pred             HHhhcCCcccEEEEecCcccchhhcCCCCCccccccCCCCCCccchHHHHHHHhhcCc
Confidence            579999999988888888875  555443     359999999999999999976553