Citrus Sinensis ID: 048561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNRSL
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccccEEEEEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccEEccccccccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHHcHHHHHHHccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHcHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEccccccccccHHHccccEEEEEEccccccccccHHHHcHHHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEccccccccccccccHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
pspspplvpeALTFLDQRLAAIYPIIQTfkntitsdpfnitstwigsdickykgfycghppdnLTAIALASidfngfelaaptldgfidqlpdlslfhansnkfsgtispklaqlpylyeldisnnkfsgtfpvailgkndlsfLDIRfnfftgsvppqvfmQTLDVLFLNNNNfmqklpqnlgstpaLYLTFAnnkftgsiprsiGKLSSTLIEVLFLNNlltgclpyelgflrearvfdasnnrltgplpcslgclEKIERLNLSGNLLYGQVPEVLCALDNlvnlslsnnyftgvgPLCRKLIKngvldvnrncihylpdqrsthecalfflqprfcfypswynfipcskvspwshphspsrtnsssvAYNALVRNRSL
Flexible Loop (DISEMBL)
PSPSPPLVPEALTFLDQRLAAIYPIIQTfkntitsdpfNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSpsrtnsssvaynALVRNRSL
Low Complexity Region (SEG)
PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAldnlvnlslsnnYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNRSL
Disordered region (IsUnstruct)
*********EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVS***************************
Disordered Region (DISOPRED)
****PPL*PEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPS*******************************LVRNR**
Disordered Region (DISEMBL)
PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVS*************SSVAYNALVRNRSL
Disordered Region (DISPRO)
*SPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHP**********VA*NA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q8W3M4	404	Uncharacterized protein A	yes	no	0.895	0.846	0.597	1e-120
O81765	699	Pollen-specific leucine-r	no	no	0.845	0.462	0.435	3e-74
Q9LHF1	494	Leucine-rich repeat exten	no	no	0.850	0.657	0.433	2e-73
Q9XIL9	727	Pollen-specific leucine-r	no	no	0.856	0.449	0.418	3e-71
O65375	744	Leucine-rich repeat exten	no	no	0.910	0.467	0.403	5e-71
O48809	786	Leucine-rich repeat exten	no	no	0.845	0.410	0.427	6e-71
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.850	0.427	0.421	8e-71
Q4PSE6	433	Leucine-rich repeat exten	no	no	0.871	0.769	0.394	5e-69
Q9SN46	857	Leucine-rich repeat exten	no	no	0.829	0.369	0.424	5e-68
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.856	0.342	0.4	6e-67

>sp|Q8W3M4|Y4744_ARATH Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/348 (59%), Positives = 266/348 (76%), Gaps = 6/348 (1%)

Query: 10  EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIAL 69
           E L+FLDQRLA +YP+IQ FK+ IT DP+N+T TWIGSDIC Y+GF+C +PP N TA+ +
Sbjct: 36  EILSFLDQRLAVVYPVIQRFKSLITLDPYNVTKTWIGSDICSYRGFHCDNPPHNKTAVTV 95

Query: 70  ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129
           ASIDFNGF+L+AP+++GFIDQ  DL+LFH NSN F GT+  K+  L YLYELDISNN+F+
Sbjct: 96  ASIDFNGFQLSAPSIEGFIDQFADLALFHVNSNNFGGTVPSKIVNLRYLYELDISNNRFT 155

Query: 130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ--NLGSTP 187
           G FP A++G + L+F+DIRFN F+GS+PPQ+  Q L+VLF+N+N F   LP+    G+T 
Sbjct: 156 GQFPTAVVGMSGLTFIDIRFNSFSGSIPPQILGQNLEVLFINDNGFTASLPEIPGDGTTH 215

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
            L+LT ANNKF G +PRSI +  STL EVLFLNN  TGC+P+E+GFL  A V D   N+L
Sbjct: 216 ILFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGNKL 275

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL--DNLVNLSLSNNYFTGVGPLCRKL 305
           TGPLP SL CLEK+E+LN +GNLL+G VPE +C L  DNLVNLSLS+NYFT VGP CR L
Sbjct: 276 TGPLPLSLMCLEKVEQLNFAGNLLFGAVPEAVCMLLRDNLVNLSLSDNYFTHVGPWCRGL 335

Query: 306 IKNGVLDVNRNCIHYLPDQRSTHECALFFLQPR--FCFYPSWYNFIPC 351
           ++ GVLDV  NCI + P QRS  ECA FF++P+  +C +  +++F  C
Sbjct: 336 LEKGVLDVGNNCIPFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSC 383

Arabidopsis thaliana (taxid: 3702)

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/333 (43%), Positives = 198/333 (59%), Gaps = 10/333 (3%)

Query: 13  TFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASI 72
           TF + RL   Y  +Q +K  I SDPFN T  W G  +C Y G  C    D+     +A +
Sbjct: 80  TFANTRLKRAYIALQAWKKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGV 139

Query: 73  DFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTF 132
           D NG ++A   L   +  + D+++FH NSN+F G I     +L  ++E D+SNN+F G F
Sbjct: 140 DLNGADIAG-HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPF 198

Query: 133 PVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLT 192
           P  +L   D+ + D+RFN F G VPP++F + LD +FLN+N F   +P++LG +PA  +T
Sbjct: 199 PNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESLGESPASVVT 258

Query: 193 FANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP 252
           FANNKFTG IP+SIG + + L E++F++N L GC P E+G L    VFDAS N   G LP
Sbjct: 259 FANNKFTGCIPKSIGNMKN-LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLP 317

Query: 253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-----RKLIK 307
            S   L  +E +++SGN L G VP  +C L NLVNL+ S NYF+G G  C     RK I 
Sbjct: 318 TSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEI- 376

Query: 308 NGVLDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
              LD  RNC+   P+QRS  ECA+   +P  C
Sbjct: 377 --ALDDTRNCLASRPEQRSAQECAVVINRPVDC 407

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/330 (43%), Positives = 205/330 (62%), Gaps = 5/330 (1%)

Query: 8   VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
           V  +L F + RL + Y  +Q +K  I SDP NIT  WIGS++C Y G +C    DN    
Sbjct: 63  VDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIR 122

Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
            +A ID N  ++A   L   +  L DL+LFH NSN+F GT+  K  QL  L+ELD+SNN+
Sbjct: 123 TVAGIDLNHADIAG-YLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNR 181

Query: 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
           F+G FP  +L    L FLD+RFN F G+VP ++F + LD +F+N+N F  +LP+N G +P
Sbjct: 182 FAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSP 241

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
              +  ANN F G IP S+ ++ + L E++F+NN L  CLP ++G L+   VFD S N L
Sbjct: 242 VSVIVLANNHFHGCIPTSLVEMKN-LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNEL 300

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK 307
            GPLP S+G + ++E+LN++ NLL G++P  +C L  L N + S N+FTG  P+C +L +
Sbjct: 301 VGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSE 360

Query: 308 NGVLDVNRNCIHYLPDQRSTHECALFFLQP 337
               D  RNC+   P QRS+ +C+ F  +P
Sbjct: 361 ---FDDRRNCLPGRPAQRSSRQCSAFLSRP 387

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIL9|PLRX3_ARATH Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1

 Score =  269 bits (687), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 194/330 (58%), Gaps = 3/330 (0%)

Query: 12  LTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALAS 71
           +TF + RL   Y  +Q +K  + SDPFN T  W G  +C Y G +C    D+     +A 
Sbjct: 53  VTFANHRLKRAYIALQAWKKAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAG 112

Query: 72  IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGT 131
           +D NG ++A   L   +  + D+++FH NSN+F G I     +L  ++E D+SNN+F G 
Sbjct: 113 VDLNGADIAG-HLPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGP 171

Query: 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL 191
           FP  +L    + F+D+R+N F G VPP++F + LD +FLNNN F   +P +LG + A  +
Sbjct: 172 FPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVV 231

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL 251
           TFA+NKF+G IPRSIG + + L E++F +N L GC P E+G L    VFDAS N  TG L
Sbjct: 232 TFAHNKFSGCIPRSIGNMKN-LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVL 290

Query: 252 PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGV- 310
           P S   L  +E  ++SGN L G +PE +C L  LVNL+ + NYF G G  C    +  + 
Sbjct: 291 PPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIA 350

Query: 311 LDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
           LD  RNC+   P QRS  ECA+   +P  C
Sbjct: 351 LDDTRNCLPDRPKQRSAKECAVVISRPVDC 380

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  268 bits (685), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/354 (40%), Positives = 209/354 (59%), Gaps = 6/354 (1%)

Query: 8   VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
           V + L F + +L   Y  +Q++K  I SDPFN T+ W GSD+C Y G YC   P      
Sbjct: 40  VDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTR 99

Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
            +A ID N  ++A   L   +  L DL+LFH NSN+F G +     ++  LYELD+SNN+
Sbjct: 100 VVAGIDLNHADMAG-YLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNR 158

Query: 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
           F G FP  +L    L FLD+R+N F G +P ++F + LD +FLN+N F   +P+N+G++P
Sbjct: 159 FVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSP 218

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
              L  A+N   G IP SIG++  TL E++  N+ LTGCLP ++G L++  VFD ++NRL
Sbjct: 219 VSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRL 278

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLI 306
            GPLP S+G ++ +E L+++ N   G +P  +C L NL N + S+NYF+G  P+C   L+
Sbjct: 279 QGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLL 338

Query: 307 KNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFI----PCSKVSP 356
            + V++   NCI  L  QRS  +C+    +P  C     YN      P  K+SP
Sbjct: 339 ADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSP 392

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1

 Score =  268 bits (684), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 139/325 (42%), Positives = 200/325 (61%), Gaps = 2/325 (0%)

Query: 8   VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
           V  +L F +  L   Y  +Q++K  I SDPFN T+ W GSD+C Y G +C   P +    
Sbjct: 42  VDPSLKFENPSLRQAYIALQSWKQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPSSPKTR 101

Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
            +A ID N  ++A   L   +  L DL+LFH NSN+F G +      +  L+ELD+SNN+
Sbjct: 102 VVAGIDLNHADMAG-YLPRELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNR 160

Query: 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
           F G FP  +L    L FLD+R+N F GS+P ++F + LD +FLN+N FM  +P+N+G++P
Sbjct: 161 FVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENMGNSP 220

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
              L  A+N   G IP SIG +  TL E++  N+ LTGCLP ++G L+   VFD S NRL
Sbjct: 221 VSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRL 280

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI- 306
           +GPLP S+G ++ +E+LN++ N   G +P  +C L NL N + S+N+FTG  P C  L+ 
Sbjct: 281 SGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSNFFTGDAPRCVALLG 340

Query: 307 KNGVLDVNRNCIHYLPDQRSTHECA 331
            N V++ + NCI    DQRS+ EC+
Sbjct: 341 DNVVVNGSMNCIDGKEDQRSSKECS 365

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  267 bits (683), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 202/330 (61%), Gaps = 5/330 (1%)

Query: 8   VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
           V  +L F + RL   Y  +Q +K  I SDP N TS WIGS++C Y G +C    DN    
Sbjct: 55  VDPSLNFENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIR 114

Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
            +A ID N  ++A   L   +  L DL+LFH NSN+F GT+  +  +L  L+ELD+SNN+
Sbjct: 115 TVAGIDLNHADIAG-YLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNR 173

Query: 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
           F+G FP  +L    L FLD+RFN F G+VP ++F + LD +F+N+N F  +LP+N G +P
Sbjct: 174 FAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSP 233

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
              +  ANN+F G +P S+ ++ + L E++F+NN L  CLP ++G L+   VFD S N L
Sbjct: 234 VSVIVLANNRFHGCVPSSLVEMKN-LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNEL 292

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK 307
            GPLP S+G +  +E+LN++ N+L G++P  +C L  L N + S N+FTG  P+C +L +
Sbjct: 293 VGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE 352

Query: 308 NGVLDVNRNCIHYLPDQRSTHECALFFLQP 337
               D  RNC+   P QRS  +C  F  +P
Sbjct: 353 ---FDDRRNCLPGRPAQRSPGQCKAFLSRP 379

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSE6|LRX7_ARATH Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2 SV=1

 Score =  261 bits (668), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 133/337 (39%), Positives = 197/337 (58%), Gaps = 4/337 (1%)

Query: 4   SPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDN 63
            P  +P  L F + RL   Y  +Q +K  + SDP+N+T+ W GS +C Y G  C    D+
Sbjct: 36  DPITIPPYLIFENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDD 95

Query: 64  LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDI 123
                ++ +D N  ++A   L   +  L D++LFH NSN+F GT+    +QL  L+ELD+
Sbjct: 96  PLVKTVSGVDLNQGDIAG-HLPEELGLLTDIALFHVNSNRFCGTLPVGFSQLSLLFELDL 154

Query: 124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL 183
           SNN+F+G FP  ++G   L +LD+R+N F G +P  +F + LD LFLN+N F  K+P N+
Sbjct: 155 SNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNRFRSKIPVNM 214

Query: 184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243
           G++P   L  A+N+F G IP S GK+  TL E++ ++N L  C+P ++G L+   V D S
Sbjct: 215 GNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGLLQNVTVLDIS 274

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303
            N L G LP S+G +E +E LN+  N+L G +P+ LC+L+ L +    +NYFTG    CR
Sbjct: 275 YNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSNYFTGEPATCR 334

Query: 304 KLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
            L      +   NC   + DQRS  EC +F  +P  C
Sbjct: 335 YLEN---YNYTMNCFKDVRDQRSMMECKMFLSKPVDC 368

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  258 bits (659), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/330 (42%), Positives = 194/330 (58%), Gaps = 13/330 (3%)

Query: 8   VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
           V  +L F + RL   Y  +Q +K  I SDP N T+ WIGSD+C Y G YC    DN    
Sbjct: 67  VDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIR 126

Query: 68  ALASIDFNGFELAAPTLDGFIDQ----LPDLSLFHANSNKFSGTISPKLAQLPYLYELDI 123
            +A ID N  ++A     G++ Q    L DL+LFH NSN+F GT+  +  +L  L+ELD+
Sbjct: 127 TVAGIDLNHADIA-----GYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDL 181

Query: 124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL 183
           SNN+F+G FP  +L    L FLD+RFN F G VP ++F + LD +F+N+N F  +LP NL
Sbjct: 182 SNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNL 241

Query: 184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243
           G +P   +  ANN F G IP S+G + + L E++F+ N    CLP ++G L+   VFD S
Sbjct: 242 GDSPVSVIVVANNHFHGCIPTSLGDMRN-LEEIIFMENGFNSCLPSQIGRLKNVTVFDFS 300

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303
            N L G LP S+G +  +E+LN++ N   G++P  +C L  L N + S N+FTG  P+C 
Sbjct: 301 FNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCL 360

Query: 304 KLIKNGVLDVNRNCIHYLPDQRSTHECALF 333
            L      D  RNC+   P QRS  +CA F
Sbjct: 361 GLPG---FDDRRNCLPARPAQRSPGQCAAF 387

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  254 bits (650), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/330 (40%), Positives = 192/330 (58%), Gaps = 3/330 (0%)

Query: 12  LTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALAS 71
           L F + RL   Y  +Q +K    SDPFN  + W+G D+C YKG +C    D+ + + +A 
Sbjct: 65  LKFANNRLKRAYIALQAWKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAG 124

Query: 72  IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGT 131
           ID N  ++A   L   +  L D++LFH NSN+F G I   L++L  +YE D+SNN+F G 
Sbjct: 125 IDLNHADIAG-YLPPELGLLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGP 183

Query: 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL 191
           FP   L    L FLDIR+N F G +PP++F + LD +FLNNN F   +P+ +G + A  +
Sbjct: 184 FPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVV 243

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL 251
           TFA+NKF+G IP++IG++ + L E++F+ N L+GCLP E+G L    VFDAS+N   G L
Sbjct: 244 TFAHNKFSGCIPKTIGQMKN-LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSL 302

Query: 252 PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGV 310
           P +L  L  +E+++ S N   G V + +C L  L N + S N+F G    C     +   
Sbjct: 303 PSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQ 362

Query: 311 LDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
            D   NC+   P+Q+S  EC     +P  C
Sbjct: 363 FDDTSNCLQNRPNQKSAKECLPVVSRPVDC 392

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
255555347	418	serine-threonine protein kinase, plant-t	0.994	0.909	0.712	1e-153
356519731	417	PREDICTED: uncharacterized protein At4g0	0.979	0.896	0.671	1e-146
224060520	342	predicted protein [Populus trichocarpa]	0.887	0.991	0.749	1e-146
224105585	336	predicted protein [Populus trichocarpa]	0.871	0.991	0.747	1e-140
255538218	437	serine-threonine protein kinase, plant-t	0.897	0.784	0.682	1e-133
449446095	1406	PREDICTED: uncharacterized protein LOC10	0.900	0.244	0.683	1e-132
356553974	435	PREDICTED: uncharacterized protein At4g0	0.921	0.809	0.666	1e-132
449520880	429	PREDICTED: uncharacterized protein At4g0	0.900	0.801	0.683	1e-131
224137628	430	predicted protein [Populus trichocarpa]	0.931	0.827	0.653	1e-130
356564166	443	PREDICTED: uncharacterized protein At4g0	0.913	0.787	0.658	1e-129

>gi|255555347|ref|XP_002518710.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223542091|gb|EEF43635.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/382 (71%), Positives = 313/382 (81%), Gaps = 2/382 (0%)

Query: 1   PSPSPPL-VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGH 59
           P  SPPL +P+A TFLDQRLA +YPIIQ+FK  +TSDP NIT +W+GSDIC Y+GFYC +
Sbjct: 36  PQASPPLPIPQASTFLDQRLATVYPIIQSFKAIVTSDPLNITQSWVGSDICNYRGFYCDN 95

Query: 60  PPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLY 119
           PPDNL+AIALA+IDFNGF+LAAP+LDGFIDQLPDL++FHANSN FSGTISPK+A L YLY
Sbjct: 96  PPDNLSAIALAAIDFNGFQLAAPSLDGFIDQLPDLAIFHANSNNFSGTISPKIANLQYLY 155

Query: 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKL 179
           ELD+SNN FSG FP A+L    L FLDIRFNFFTGSVPPQVF   LDVLFLNNNNFMQKL
Sbjct: 156 ELDLSNNNFSGNFPTAVLSITGLFFLDIRFNFFTGSVPPQVFALRLDVLFLNNNNFMQKL 215

Query: 180 PQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARV 239
           P+NLG+TP  YLT ANNKFTG IPRSI   SSTL EVL LNNLLTGC+PYE+GFL+E  +
Sbjct: 216 PENLGTTPVPYLTLANNKFTGQIPRSIFNASSTLKEVLLLNNLLTGCIPYEIGFLKELAL 275

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299
           FDASNN LTGPLPCSLGCL KIE+LNL+GN LYGQVPEV+CAL NL NLSLSNNYFT +G
Sbjct: 276 FDASNNLLTGPLPCSLGCLAKIEQLNLAGNFLYGQVPEVVCALGNLANLSLSNNYFTKIG 335

Query: 300 PLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSH 359
           PLC KL+K GVLD+  NCIH LPDQRS HEC  FFL P++C YPS+++FIPC   +P   
Sbjct: 336 PLCWKLVKTGVLDIRNNCIHGLPDQRSWHECFFFFLHPKYCPYPSFFHFIPCKIHTPPPP 395

Query: 360 PHSPSRT-NSSSVAYNALVRNR 380
           P  P      + ++Y AL ++R
Sbjct: 396 PIQPRVGPKRNLISYKALSKHR 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519731|ref|XP_003528523.1| PREDICTED: uncharacterized protein At4g06744-like [Glycine max]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/374 (67%), Positives = 298/374 (79%)

Query: 7   LVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTA 66
           LVP  L F+DQRLA ++PIIQTFKNTITSDP  +TSTW+G +IC Y GFYC +PPDNLTA
Sbjct: 41  LVPNILNFIDQRLAQVFPIIQTFKNTITSDPRGVTSTWVGPNICNYTGFYCDNPPDNLTA 100

Query: 67  IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN 126
             +ASIDFNGF+L APTLDGFIDQLPDL+LFHANSNKFSG +SPK+A L +LYELD+SNN
Sbjct: 101 TTIASIDFNGFQLTAPTLDGFIDQLPDLALFHANSNKFSGIVSPKIAGLKFLYELDLSNN 160

Query: 127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGST 186
            FSG FP ++L    LSFLDIRFN F+G++PPQ+FMQTLDVLFLN+NNFM  LP NLG+ 
Sbjct: 161 LFSGAFPTSVLNIPTLSFLDIRFNSFSGTLPPQIFMQTLDVLFLNDNNFMLTLPNNLGNA 220

Query: 187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR 246
           P +YLT ANNKFTG IPRSIGK SSTLIEVL LNNLLTGCLPYE+GFL+   +FD   N 
Sbjct: 221 PVVYLTLANNKFTGPIPRSIGKASSTLIEVLLLNNLLTGCLPYEIGFLKNLTLFDVGGNL 280

Query: 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI 306
           LTGP+P S GCL+K+E+LNL+ N LYGQVPEV+CAL NL N SLS NYFT VGPLC+ LI
Sbjct: 281 LTGPIPWSFGCLKKVEQLNLARNFLYGQVPEVVCALGNLANFSLSYNYFTKVGPLCKMLI 340

Query: 307 KNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPSRT 366
           + GVLDV +NCI  LPDQRS  EC  FFL P+ C +P+ +NF+PC     W+ P   +++
Sbjct: 341 QRGVLDVRKNCIFGLPDQRSVRECMAFFLIPKSCSHPALFNFVPCQIQHHWTKPQERTKS 400

Query: 367 NSSSVAYNALVRNR 380
               ++Y+AL RNR
Sbjct: 401 KRHLLSYSALSRNR 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060520|ref|XP_002300228.1| predicted protein [Populus trichocarpa] gi|222847486|gb|EEE85033.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/339 (74%), Positives = 288/339 (84%)

Query: 14  FLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASID 73
           FLDQRLA+++PIIQ FK+TITSDPFNIT TW+G DIC YKGFYC  PPDN +A+ALASID
Sbjct: 2   FLDQRLASVFPIIQVFKDTITSDPFNITQTWVGPDICNYKGFYCTSPPDNNSAVALASID 61

Query: 74  FNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP 133
           FNGF+L+APTLDGFIDQLPDL+LFHANSNKFSGTISPK+ +LP+LYELDISNN F G FP
Sbjct: 62  FNGFQLSAPTLDGFIDQLPDLALFHANSNKFSGTISPKITKLPFLYELDISNNNFLGNFP 121

Query: 134 VAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTF 193
           + ILG   LSFLDIRFNFFTG+VPP+VF Q LDVLFLNNNNF+QKLP+NLGST  LYLT 
Sbjct: 122 MEILGIPGLSFLDIRFNFFTGTVPPEVFTQGLDVLFLNNNNFIQKLPENLGSTTVLYLTL 181

Query: 194 ANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPC 253
           ANNKF G IPRSI K S+TL EVLFLNNLL GCLPYELGFL E  +FDA NN LTGPLPC
Sbjct: 182 ANNKFIGPIPRSISKASATLKEVLFLNNLLAGCLPYELGFLSELVLFDAGNNLLTGPLPC 241

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDV 313
           SLGCL K+E+ NL+GNLLYGQVPEV+CAL  LVNLSLS+NYFT +GP CRKL+ +GVLD+
Sbjct: 242 SLGCLAKLEQFNLTGNLLYGQVPEVVCALGKLVNLSLSSNYFTELGPTCRKLVNSGVLDI 301

Query: 314 NRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCS 352
            +NCIH LP+QRS  EC  F L PR+C  P+ +N IPC 
Sbjct: 302 KKNCIHDLPEQRSVLECDAFSLHPRYCPNPASFNLIPCK 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105585|ref|XP_002313863.1| predicted protein [Populus trichocarpa] gi|222850271|gb|EEE87818.1| predicted protein [Populus trichocarpa]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/333 (74%), Positives = 280/333 (84%)

Query: 1   PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHP 60
           P  SPPL+PE L FLDQRLA +YPIIQ FKNTITSDP +IT TW+G+DIC YKGFYC  P
Sbjct: 3   PLISPPLIPEILNFLDQRLALVYPIIQDFKNTITSDPLDITQTWVGADICNYKGFYCTSP 62

Query: 61  PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYE 120
           PDN +AI LASIDFNGF+L+APTLDGFIDQLPDL+LFHANSNKFSGTISPK+ +LP+LYE
Sbjct: 63  PDNDSAITLASIDFNGFQLSAPTLDGFIDQLPDLALFHANSNKFSGTISPKITKLPFLYE 122

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP 180
           LDISNN F G+FP+ +L    LSFLDIRFNFFTG+VPPQVF Q LDVLFLNNNNFMQ LP
Sbjct: 123 LDISNNNFFGSFPMEVLAIPALSFLDIRFNFFTGTVPPQVFTQRLDVLFLNNNNFMQGLP 182

Query: 181 QNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240
           +NLGSTP LYLT A NKF G IPRSI K S+TL EVLF +NLLTGCLPYELGFLR+  +F
Sbjct: 183 ENLGSTPVLYLTLAYNKFIGPIPRSIIKASATLTEVLFSHNLLTGCLPYELGFLRKLVLF 242

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
           DAS N LTGPLPCSLGCL K+E+ NL+ NLLYGQVPEV+CAL  LVNLSLS+NYFT +GP
Sbjct: 243 DASYNFLTGPLPCSLGCLAKLEQFNLASNLLYGQVPEVVCALGKLVNLSLSSNYFTKLGP 302

Query: 301 LCRKLIKNGVLDVNRNCIHYLPDQRSTHECALF 333
            C KL ++GVLD+ +NCI  LP QRS  ECA F
Sbjct: 303 KCTKLERSGVLDIRKNCIPDLPGQRSARECAAF 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538218|ref|XP_002510174.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223550875|gb|EEF52361.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/343 (68%), Positives = 273/343 (79%)

Query: 10  EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIAL 69
           E   FLD+RLA +YPIIQ FK+ ITSDP  IT TW+GSDIC YKGF+C +PPDN +AIA+
Sbjct: 81  ELSVFLDERLAFVYPIIQKFKSIITSDPLGITKTWVGSDICSYKGFFCDNPPDNKSAIAV 140

Query: 70  ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129
           ASIDFNGF+L+A TLDGF+DQLPD++LFHANSN FSGTISP +A+LPYLYELDISNN FS
Sbjct: 141 ASIDFNGFQLSAATLDGFLDQLPDIALFHANSNFFSGTISPDIAKLPYLYELDISNNLFS 200

Query: 130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL 189
           G FP A+LG N L+FLDIRFNFF+G++PPQ+F Q LD LFLNNNNFM  LP N+ +T  L
Sbjct: 201 GPFPTAVLGMNGLTFLDIRFNFFSGAIPPQLFTQELDALFLNNNNFMTNLPDNIVNTHIL 260

Query: 190 YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249
           YLT ANNKF G +P  I K  S+L EVL LNN LTGCLPYE+G L+EA VFDA NNRLTG
Sbjct: 261 YLTLANNKFIGPLPGGIFKAFSSLTEVLLLNNQLTGCLPYEIGLLKEAVVFDAGNNRLTG 320

Query: 250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
            LP SL CL+K+E+LN +GNLL+G VPE++C ++NLVNLSLS+NYFT VGP CR LI  G
Sbjct: 321 SLPLSLACLQKVEQLNFAGNLLFGMVPELVCKMENLVNLSLSDNYFTTVGPWCRILIAKG 380

Query: 310 VLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCS 352
           VLDV  NCI  LP QRS  ECA FF  PRFC +   Y +IPC 
Sbjct: 381 VLDVRNNCIPDLPFQRSIMECANFFAHPRFCPHMWSYTYIPCK 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446095|ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/344 (68%), Positives = 277/344 (80%)

Query: 10   EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIAL 69
            + L FLDQRLA +YPIIQTFK  ITSDP  +T TW+GSDICKY+GFYC HPPDN +A+ +
Sbjct: 700  QDLRFLDQRLAVVYPIIQTFKALITSDPLGVTQTWVGSDICKYQGFYCDHPPDNKSAVTI 759

Query: 70   ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129
            A+IDFNGF+L A TLDGFID LPDL++FHANSN F GTI+PK+A LPYLYELD+SNN+ S
Sbjct: 760  AAIDFNGFQLTASTLDGFIDGLPDLAIFHANSNNFFGTITPKIASLPYLYELDLSNNQLS 819

Query: 130  GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL 189
            GTFPVAIL   DLSF DIRFNFFTG VP Q+F+++ D LFLNNNNF  KLP N GST   
Sbjct: 820  GTFPVAILSVTDLSFFDIRFNFFTGFVPQQLFVKSFDFLFLNNNNFGMKLPINFGSTTTP 879

Query: 190  YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249
            Y+T ANNKFTG IPRSIGK S+ L E+L LNN LTGC+PYE+GFL++A VFDA  N LTG
Sbjct: 880  YITLANNKFTGPIPRSIGKASANLTEILLLNNQLTGCIPYEVGFLKKAIVFDAGENLLTG 939

Query: 250  PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
            PLPCSL CLEKIE+LN +GN LYGQVPEV+C L NL+NLSLS+NYFT +GP CRKL++NG
Sbjct: 940  PLPCSLSCLEKIEQLNFAGNFLYGQVPEVVCDLGNLLNLSLSDNYFTKIGPSCRKLVRNG 999

Query: 310  VLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSK 353
            VLD+ +NCI  LPDQRS  +C   +L    C +P+ Y F+PC K
Sbjct: 1000 VLDLRKNCIRGLPDQRSPLDCFFSYLFQYPCPFPATYGFVPCQK 1043

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553974|ref|XP_003545325.1| PREDICTED: uncharacterized protein At4g06744-like [Glycine max]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/360 (66%), Positives = 274/360 (76%), Gaps = 8/360 (2%)

Query: 1   PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHP 60
           P+ SPPLV     F DQRL  +YPIIQ FK+TITSDP  +T TW+GSDIC YKGFYC  P
Sbjct: 79  PASSPPLV-----FADQRLEVVYPIIQKFKSTITSDPLGVTKTWVGSDICSYKGFYCDIP 133

Query: 61  PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYE 120
           PDN +A ALASID NGF+L+A TLDGFID LPD++LFHANSN F GTISP++A+LPYLYE
Sbjct: 134 PDNSSATALASIDLNGFQLSASTLDGFIDNLPDIALFHANSNNFGGTISPQIAKLPYLYE 193

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP 180
           LD+SNN+ SG FP A+LG N L+FLD+RFN F+G VPPQ+F Q L VLF+NNN F Q LP
Sbjct: 194 LDVSNNQLSGPFPTAVLGMNSLTFLDLRFNSFSGEVPPQIFTQNLQVLFINNNIFTQGLP 253

Query: 181 QNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240
            NL ST  L LT ANNKF G IPRS+ K  +TL EVL LNN LTGCLPYE+GFL EA VF
Sbjct: 254 DNLASTHILLLTLANNKFMGPIPRSLPKALATLSEVLLLNNQLTGCLPYEIGFLEEATVF 313

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC-ALDNLVNLSLSNNYFTGVG 299
           DA NN+LTGPLP SL CLEK+E LNL GN+LYG VPEV+C  L NLVN SLS+NYFT VG
Sbjct: 314 DAGNNQLTGPLPLSLSCLEKVEVLNLGGNMLYGMVPEVVCVGLVNLVNFSLSDNYFTHVG 373

Query: 300 PLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSH 359
           PLCR LI+ GVLDV  NCI  LP QRS  ECA FF  PR C +  ++  IPC    P+ H
Sbjct: 374 PLCRMLIQRGVLDVRNNCIPDLPFQRSVMECAEFFATPRMCPFMWFHGLIPCKL--PFQH 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520880|ref|XP_004167460.1| PREDICTED: uncharacterized protein At4g06744-like [Cucumis sativus]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/344 (68%), Positives = 277/344 (80%)

Query: 10  EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIAL 69
           + L FLDQRLA +YPIIQTFK  ITSDP  +T TW+GSDICKY+GFYC HPPDN +A+ +
Sbjct: 57  QDLRFLDQRLAVVYPIIQTFKALITSDPLGVTQTWVGSDICKYQGFYCDHPPDNKSAVTI 116

Query: 70  ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129
           A+IDFNGF+L A TLDGFID LPDL++FHANSN F GTI+PK+A LPYLYELD+SNN+ S
Sbjct: 117 AAIDFNGFQLTASTLDGFIDGLPDLAIFHANSNNFFGTITPKIASLPYLYELDLSNNQLS 176

Query: 130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL 189
           GTFPVAIL   DLSF DIRFNFFTG VP Q+F+++ D LFLNNNNF  KLP N GST   
Sbjct: 177 GTFPVAILSVTDLSFFDIRFNFFTGFVPQQLFVKSFDFLFLNNNNFGMKLPINFGSTTTP 236

Query: 190 YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249
           Y+T ANNKFTG IPRSIGK S+ L E+L LNN LTGC+PYE+GFL++A VFDA  N LTG
Sbjct: 237 YITLANNKFTGPIPRSIGKASANLTEILLLNNQLTGCIPYEVGFLKKAIVFDAGENLLTG 296

Query: 250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
           PLPCSL CLEKIE+LN +GN LYGQVPEV+C L NL+NLSLS+NYFT +GP CRKL++NG
Sbjct: 297 PLPCSLSCLEKIEQLNFAGNFLYGQVPEVVCDLGNLLNLSLSDNYFTKIGPSCRKLVRNG 356

Query: 310 VLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSK 353
           VLD+ +NCI  LPDQRS  +C   +L    C +P+ Y F+PC K
Sbjct: 357 VLDLRKNCIRGLPDQRSPLDCFFSYLFQYPCPFPATYGFVPCQK 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137628|ref|XP_002327173.1| predicted protein [Populus trichocarpa] gi|222835488|gb|EEE73923.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/358 (65%), Positives = 275/358 (76%), Gaps = 2/358 (0%)

Query: 1   PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHP 60
           P  + P+  E L F DQRLA++YPIIQ FK+ ITSDP  IT TW+GSDIC YKGF+C  P
Sbjct: 63  PPAALPVKTELLVFADQRLASVYPIIQKFKSLITSDPLGITKTWVGSDICNYKGFFCDSP 122

Query: 61  PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYE 120
           PDN +A A+ASIDFNGF+LAAPTLDGF+DQLPD++LFHANSN F+GTIS  +A+LPYLYE
Sbjct: 123 PDNNSATAVASIDFNGFQLAAPTLDGFLDQLPDVALFHANSNNFAGTISSNIARLPYLYE 182

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP 180
           LDISNN FSG+FP A+LG N L+FLDIRFNFF G+VPPQ+F Q L+VLF+NNNNF+  LP
Sbjct: 183 LDISNNLFSGSFPTAVLGMNGLTFLDIRFNFFAGAVPPQIFTQNLEVLFINNNNFLTTLP 242

Query: 181 QNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240
            NLGST  LYLT ANNKF G IP  I K  S+L EVL  NN LTGCLPYE+G L+EA VF
Sbjct: 243 DNLGSTHILYLTLANNKFIGPIPTGIFKAFSSLSEVLLSNNQLTGCLPYEVGLLKEAIVF 302

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
           DASNN+LTGPLP +L CLEK+E LN +GN L+G VPEV+C L+ L N SLS+NYFT +GP
Sbjct: 303 DASNNKLTGPLPVALSCLEKVELLNFTGNQLFGMVPEVVCELEKLRNFSLSDNYFTTLGP 362

Query: 301 LCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWS 358
           +CR L   GVLD+  NCI  LP QRS  EC  F   P+ C     Y FIPC+  SP+S
Sbjct: 363 MCRDLFYKGVLDITNNCIPGLPFQRSVVECLDFIAHPKSCPRMWSYTFIPCN--SPFS 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564166|ref|XP_003550327.1| PREDICTED: uncharacterized protein At4g06744-like [Glycine max]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/357 (65%), Positives = 269/357 (75%), Gaps = 8/357 (2%)

Query: 4   SPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDN 63
           SPPLV     F DQRL  +YP +Q FK+TITSDP  +T TW+GSDIC YKGFYC  PPDN
Sbjct: 90  SPPLV-----FADQRLEVVYPTVQKFKSTITSDPLGVTKTWVGSDICSYKGFYCDTPPDN 144

Query: 64  LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDI 123
            +A ALASID NGF+L+A TLDGFID LPD++LFHANSN F GTISP++A+L YLYELD+
Sbjct: 145 SSATALASIDLNGFQLSASTLDGFIDNLPDIALFHANSNNFGGTISPQIAKLSYLYELDV 204

Query: 124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL 183
           SNN+ SG FP A+LG + L+FLD+RFNFF+G+VPPQ+F Q L VLF+NNN   Q LP NL
Sbjct: 205 SNNQLSGPFPTAVLGMSTLTFLDLRFNFFSGAVPPQIFTQNLQVLFINNNILTQGLPDNL 264

Query: 184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243
            ST  L LT ANNKF G IPRS+ K  STL EVL LNN LTGCLPYE+GFL EA VFDA 
Sbjct: 265 ASTHILLLTLANNKFMGPIPRSLPKALSTLSEVLLLNNQLTGCLPYEIGFLEEATVFDAG 324

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC-ALDNLVNLSLSNNYFTGVGPLC 302
           NN+LTGPLP SL CLEK+E LN  GNLLYG VPEV+C  L NLVN SLS+NYFT VGP C
Sbjct: 325 NNQLTGPLPLSLSCLEKVEVLNFGGNLLYGMVPEVVCVGLVNLVNFSLSDNYFTHVGPFC 384

Query: 303 RKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSH 359
           R LI+ GVLDV  NCI  LP QRS  ECA FF  PR C +  ++  IPC    P+ H
Sbjct: 385 RMLIQRGVLDVRNNCIPDLPFQRSVMECAEFFATPRMCPFMWFHGLIPCKL--PFQH 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:1005716458	404	AT4G06744 [Arabidopsis thalian	0.918	0.868	0.559	3e-108
TAIR|locus:2012171	494	AT1G49750 [Arabidopsis thalian	0.903	0.698	0.512	8.9e-94
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.850	0.657	0.418	2.1e-68
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.850	0.427	0.406	2.2e-66
TAIR|locus:2179449	433	AT5G25550 "AT5G25550" [Arabido	0.945	0.833	0.383	3.6e-66
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.910	0.467	0.387	1.2e-65
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.853	0.466	0.409	2e-65
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.856	0.449	0.4	2.9e-64
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.858	0.382	0.413	2.9e-64
TAIR|locus:2094389	470	AT3G22800 "AT3G22800" [Arabido	0.916	0.744	0.404	1.4e-62

TAIR|locus:1005716458 AT4G06744 [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 202/361 (55%), Positives = 258/361 (71%)

Query:    10 EALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIAL 69
             E L+FLDQRLA +YP+IQ FK+ IT DP+N+T TWIGSDIC Y+GF+C +PP N TA+ +
Sbjct:    36 EILSFLDQRLAVVYPVIQRFKSLITLDPYNVTKTWIGSDICSYRGFHCDNPPHNKTAVTV 95

Query:    70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129
             ASIDFNGF+L+AP+++GFIDQ  DL+LFH NSN F GT+  K+  L YLYELDISNN+F+
Sbjct:    96 ASIDFNGFQLSAPSIEGFIDQFADLALFHVNSNNFGGTVPSKIVNLRYLYELDISNNRFT 155

Query:   130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ--NLGSTP 187
             G FP A++G + L+F+DIRFN F+GS+PPQ+  Q L+VLF+N+N F   LP+    G+T 
Sbjct:   156 GQFPTAVVGMSGLTFIDIRFNSFSGSIPPQILGQNLEVLFINDNGFTASLPEIPGDGTTH 215

Query:   188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
              L+LT ANNKF G +PRSI +  STL EVLFLNN  TGC+P+E+GFL  A V D   N+L
Sbjct:   216 ILFLTLANNKFNGPLPRSILRSMSTLTEVLFLNNDFTGCIPHEIGFLTGASVIDIGGNKL 275

Query:   248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXX--YFTGVGPLCRKL 305
             TGPLP SL CLEK+E+LN +GNLL+G VPE +C               YFT VGP CR L
Sbjct:   276 TGPLPLSLMCLEKVEQLNFAGNLLFGAVPEAVCMLLRDNLVNLSLSDNYFTHVGPWCRGL 335

Query:   306 IKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPS-WYN-FIPCSKVSPWSHPHSP 363
             ++ GVLDV  NCI + P QRS  ECA FF++P+  + P  W++ F  C     +SH  S 
Sbjct:   336 LEKGVLDVGNNCIPFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSCR----YSHISSS 391

Query:   364 S 364
             S
Sbjct:   392 S 392

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012171 AT1G49750 [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
 Identities = 184/359 (51%), Positives = 236/359 (65%)

Query:     1 PSPSPPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDIC-KYKGFYCGH 59
             P PSPP  P+ L F    L  +YP++Q FK+ +  D      +W G DIC KY G  C  
Sbjct:   108 PQPSPP-TPD-LPFASSLLKKVYPVLQRFKDLVADDKLK---SWEGPDICNKYLGLKCAI 162

Query:    60 PPDNLTAIALASIDFNGFELAAPT-----LDGFIDQLPDLSLFHANSNKFSGTISPKLAQ 114
              P     +ALAS+ FNG  L         LD F+D+L ++++FHANSN F+G++ P  + 
Sbjct:   163 FPKT-KHLALASVQFNGLNLRGKIGKILKLDNFLDKLEEVTIFHANSNGFTGSV-PDFSN 220

Query:   115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNN 174
             L +LYELD+SNNK +G FP ++L  N+L+FLD+RFN F+GSVPPQVF   LDVLF+NNNN
Sbjct:   221 LKFLYELDLSNNKLTGDFPTSVLKGNNLTFLDLRFNSFSGSVPPQVFNLDLDVLFINNNN 280

Query:   175 FMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFL 234
              +QKLP NLGS  ALYLTFANN+FTG IP SIG +   L EVLFLNN LTGCLPY++G L
Sbjct:   281 LVQKLPLNLGSITALYLTFANNRFTGPIPESIGNIKY-LQEVLFLNNKLTGCLPYQIGNL 339

Query:   235 REARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXY 294
               A VFD   N+LTGP+P S GCLE +E+LNL+GN  YG +PE++C             Y
Sbjct:   340 TRATVFDVGFNQLTGPIPYSFGCLETMEQLNLAGNKFYGTIPEIVCEIACLQNVSLSNNY 399

Query:   295 FTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSK 353
             FT VGP CRKLIK  ++DV+ NCI  LP+Q++  ECA FF++ + C        +PC K
Sbjct:   400 FTQVGPKCRKLIKRKIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPCDK 458

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 138/330 (41%), Positives = 199/330 (60%)

Query:     8 VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
             V  +L F + RL + Y  +Q +K  I SDP NIT  WIGS++C Y G +C    DN    
Sbjct:    63 VDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIR 122

Query:    68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
              +A ID N  ++A   L   +  L DL+LFH NSN+F GT+  K  QL  L+ELD+SNN+
Sbjct:   123 TVAGIDLNHADIAG-YLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNR 181

Query:   128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
             F+G FP  +L    L FLD+RFN F G+VP ++F + LD +F+N+N F  +LP+N G +P
Sbjct:   182 FAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSP 241

Query:   188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
                +  ANN F G IP S+ ++ + L E++F+NN L  CLP ++G L+   VFD S N L
Sbjct:   242 VSVIVLANNHFHGCIPTSLVEMKN-LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNEL 300

Query:   248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRKLIK 307
              GPLP S+G + ++E+LN++ NLL G++P  +C             +FTG  P+C +L +
Sbjct:   301 VGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSE 360

Query:   308 NGVLDVNRNCIHYLPDQRSTHECALFFLQP 337
                 D  RNC+   P QRS+ +C+ F  +P
Sbjct:   361 ---FDDRRNCLPGRPAQRSSRQCSAFLSRP 387

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 134/330 (40%), Positives = 196/330 (59%)

Query:     8 VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
             V  +L F + RL   Y  +Q +K  I SDP N TS WIGS++C Y G +C    DN    
Sbjct:    55 VDPSLNFENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIR 114

Query:    68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
              +A ID N  ++A   L   +  L DL+LFH NSN+F GT+  +  +L  L+ELD+SNN+
Sbjct:   115 TVAGIDLNHADIAG-YLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNR 173

Query:   128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
             F+G FP  +L    L FLD+RFN F G+VP ++F + LD +F+N+N F  +LP+N G +P
Sbjct:   174 FAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSP 233

Query:   188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
                +  ANN+F G +P S+ ++ + L E++F+NN L  CLP ++G L+   VFD S N L
Sbjct:   234 VSVIVLANNRFHGCVPSSLVEMKN-LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNEL 292

Query:   248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRKLIK 307
              GPLP S+G +  +E+LN++ N+L G++P  +C             +FTG  P+C +L +
Sbjct:   293 VGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPE 352

Query:   308 NGVLDVNRNCIHYLPDQRSTHECALFFLQP 337
                 D  RNC+   P QRS  +C  F  +P
Sbjct:   353 ---FDDRRNCLPGRPAQRSPGQCKAFLSRP 379

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179449 AT5G25550 "AT5G25550" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 142/370 (38%), Positives = 210/370 (56%)

Query:     5 PPLVPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNL 64
             P  +P  L F + RL   Y  +Q +K  + SDP+N+T+ W GS +C Y G  C    D+ 
Sbjct:    37 PITIPPYLIFENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDDP 96

Query:    65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDIS 124
                 ++ +D N  ++A   L   +  L D++LFH NSN+F GT+    +QL  L+ELD+S
Sbjct:    97 LVKTVSGVDLNQGDIAGH-LPEELGLLTDIALFHVNSNRFCGTLPVGFSQLSLLFELDLS 155

Query:   125 NNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLG 184
             NN+F+G FP  ++G   L +LD+R+N F G +P  +F + LD LFLN+N F  K+P N+G
Sbjct:   156 NNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNRFRSKIPVNMG 215

Query:   185 STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASN 244
             ++P   L  A+N+F G IP S GK+  TL E++ ++N L  C+P ++G L+   V D S 
Sbjct:   216 NSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGLLQNVTVLDISY 275

Query:   245 NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRK 304
             N L G LP S+G +E +E LN+  N+L G +P+ LC+            YFTG    CR 
Sbjct:   276 NWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSNYFTGEPATCRY 335

Query:   305 LIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFC--FY--PSWYNFIPC-SKVSPWSH 359
             L +N   +   NC   + DQRS  EC +F  +P  C  F   P    F P  S++SP S 
Sbjct:   336 L-EN--YNYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKCSPGSSCFSPPPSQISPSSQ 392

Query:   360 PHSPSRTNSS 369
             P +P+ + +S
Sbjct:   393 PLAPAPSPTS 402

GO:0008150 "biological_process" evidence=ND

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 137/354 (38%), Positives = 201/354 (56%)

Query:     8 VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
             V + L F + +L   Y  +Q++K  I SDPFN T+ W GSD+C Y G YC   P      
Sbjct:    40 VDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTR 99

Query:    68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
              +A ID N  ++A   L   +  L DL+LFH NSN+F G +     ++  LYELD+SNN+
Sbjct:   100 VVAGIDLNHADMAG-YLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNR 158

Query:   128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
             F G FP  +L    L FLD+R+N F G +P ++F + LD +FLN+N F   +P+N+G++P
Sbjct:   159 FVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSP 218

Query:   188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
                L  A+N   G IP SIG++  TL E++  N+ LTGCLP ++G L++  VFD ++NRL
Sbjct:   219 VSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRL 278

Query:   248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCR-KLI 306
              GPLP S+G ++ +E L+++ N   G +P  +C             YF+G  P+C   L+
Sbjct:   279 QGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLL 338

Query:   307 KNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFI----PCSKVSP 356
              + V++   NCI  L  QRS  +C+    +P  C     YN      P  K+SP
Sbjct:   339 ADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSP 392

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 135/330 (40%), Positives = 187/330 (56%)

Query:    13 TFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASI 72
             TF + RL   Y  +Q +K  I SDPFN T  W G  +C Y G  C    D+     +A +
Sbjct:    80 TFANTRLKRAYIALQAWKKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGV 139

Query:    73 DFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTF 132
             D NG ++A   L   +  + D+++FH NSN+F G I     +L  ++E D+SNN+F G F
Sbjct:   140 DLNGADIAGH-LPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPF 198

Query:   133 PVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLT 192
             P  +L   D+ + D+RFN F G VPP++F + LD +FLN+N F   +P++LG +PA  +T
Sbjct:   199 PNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDNRFTSVIPESLGESPASVVT 258

Query:   193 FANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP 252
             FANNKFTG IP+SIG + + L E++F++N L GC P E+G L    VFDAS N   G LP
Sbjct:   259 FANNKFTGCIPKSIGNMKN-LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLP 317

Query:   253 CSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRK--LIKNGV 310
              S   L  +E +++SGN L G VP  +C             YF+G G  C      K   
Sbjct:   318 TSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEIA 377

Query:   311 LDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
             LD  RNC+   P+QRS  ECA+   +P  C
Sbjct:   378 LDDTRNCLASRPEQRSAQECAVVINRPVDC 407

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 132/330 (40%), Positives = 186/330 (56%)

Query:    12 LTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALAS 71
             +TF + RL   Y  +Q +K  + SDPFN T  W G  +C Y G +C    D+     +A 
Sbjct:    53 VTFANHRLKRAYIALQAWKKAVYSDPFNTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAG 112

Query:    72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGT 131
             +D NG ++A   L   +  + D+++FH NSN+F G I     +L  ++E D+SNN+F G 
Sbjct:   113 VDLNGADIAGH-LPAELGLMTDVAMFHLNSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGP 171

Query:   132 FPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL 191
             FP  +L    + F+D+R+N F G VPP++F + LD +FLNNN F   +P +LG + A  +
Sbjct:   172 FPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAIFLNNNRFTSTIPDSLGESSASVV 231

Query:   192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL 251
             TFA+NKF+G IPRSIG + + L E++F +N L GC P E+G L    VFDAS N  TG L
Sbjct:   232 TFAHNKFSGCIPRSIGNMKN-LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVL 290

Query:   252 PCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRKLIKNGV- 310
             P S   L  +E  ++SGN L G +PE +C             YF G G  C    +  + 
Sbjct:   291 PPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIA 350

Query:   311 LDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
             LD  RNC+   P QRS  ECA+   +P  C
Sbjct:   351 LDDTRNCLPDRPKQRSAKECAVVISRPVDC 380

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 138/334 (41%), Positives = 190/334 (56%)

Query:     8 VPEALTFLDQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAI 67
             V  +L F + RL   Y  +Q +K  I SDP N T+ WIGSD+C Y G YC    DN    
Sbjct:    67 VDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIR 126

Query:    68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
              +A ID N  ++A   L   +  L DL+LFH NSN+F GT+  +  +L  L+ELD+SNN+
Sbjct:   127 TVAGIDLNHADIAG-YLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNR 185

Query:   128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
             F+G FP  +L    L FLD+RFN F G VP ++F + LD +F+N+N F  +LP NLG +P
Sbjct:   186 FAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSP 245

Query:   188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
                +  ANN F G IP S+G + + L E++F+ N    CLP ++G L+   VFD S N L
Sbjct:   246 VSVIVVANNHFHGCIPTSLGDMRN-LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNEL 304

Query:   248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTGVGPLCRKLIK 307
              G LP S+G +  +E+LN++ N   G++P  +C             +FTG  P+C  L  
Sbjct:   305 VGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGL-- 362

Query:   308 NGVLDVNRNCIHYLPDQRSTHECALFF-LQPRFC 340
              G  D  RNC+   P QRS  +CA F  L P  C
Sbjct:   363 PG-FDDRRNCLPARPAQRSPGQCAAFSSLPPVDC 395

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094389 AT3G22800 "AT3G22800" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 148/366 (40%), Positives = 197/366 (53%)

Query:     4 SPPLVP-EALTFL----DQRLAAIYPIIQTFKNTITSDPFNITSTWIGSDICKYKGFYCG 58
             +PP+ P  A  FL    + RL   +  +Q +K TITSDP   TS W G ++C Y G +C 
Sbjct:    31 TPPINPCFAHPFLPPITNPRLLKAFTALQAWKFTITSDPNGFTSNWCGPNVCNYTGVFCA 90

Query:    59 HPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL 118
                DN   + +A ID N   +A   L   +  L DL+LFH NSN+F G +   L  L  L
Sbjct:    91 PALDNPYVLTVAGIDLNHANIAG-YLPLELGLLTDLALFHINSNRFQGQLPKTLKCLHLL 149

Query:   119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQK 178
             +ELD+SNNK SG FP  I     L FLDIRFN F G VP Q+F   LD LF+N+N F  +
Sbjct:   150 HELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFR 209

Query:   179 LPQNLGSTPALYLTFANNKFTGS-IPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREA 237
             LP+N+G++P   L  ANN   GS +P S  K+  TL E++  N+ LTGCL  E+G L + 
Sbjct:   210 LPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQL 269

Query:   238 RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAXXXXXXXXXXXXYFTG 297
              VFD S N L G LP ++G ++ +E+LN++ N   G +PE +C             +F+G
Sbjct:   270 TVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSYNFFSG 329

Query:   298 VGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPW 357
               P C +L +    D  RNC+   P QRS  EC  F   P  C      +F  CS  SP 
Sbjct:   330 EPPACLRLQE---FDDRRNCLPSRPMQRSLAECKSFSSYPIDCA-----SF-GCSPPSPP 380

Query:   358 SHPHSP 363
               P  P
Sbjct:   381 PPPPPP 386

GO:0005199 "structural constituent of cell wall" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W3M4	Y4744_ARATH	No assigned EC number	0.5977	0.8952	0.8465	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (319), Expect = 8e-32
 Identities = 92/277 (33%), Positives = 149/277 (53%), Gaps = 15/277 (5%)

Query: 28  TFKNTITSDPFNITSTWIGS-DICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDG 86
           +FK++I +DP    S W  S D+C ++G  C    +N + +   SID +G  ++   +  
Sbjct: 36  SFKSSI-NDPLKYLSNWNSSADVCLWQGITC----NNSSRVV--SIDLSGKNISG-KISS 87

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPY-LYELDISNNKFSGTFPVAILGKNDLSFL 145
            I +LP +   + ++N+ SG I   +      L  L++SNN F+G+ P   +   +L  L
Sbjct: 88  AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETL 145

Query: 146 DIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
           D+  N  +G +P  +    +L VL L  N  + K+P +L +  +L +LT A+N+  G IP
Sbjct: 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
           R +G++ S     L  NNL +G +PYE+G L      D   N LTGP+P SLG L+ ++ 
Sbjct: 206 RELGQMKSLKWIYLGYNNL-SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
           L L  N L G +P  + +L  L++L LS+N  +G  P
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (253), Expect = 3e-23
 Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 33/270 (12%)

Query: 60  PPDNLTAIALASIDFNGFELAA--PTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPY 117
           PP   +   L S+D +   L+   P L   + QL +L + H  SN F+G I   L  LP 
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPEL---VIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTG----------------------- 154
           L  L + +NKFSG  P  +   N+L+ LD+  N  TG                       
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 155 -SVPPQVFM-QTLDVLFLNNNNFMQKLPQNLGSTPALY-LTFANNKFTGSIPRSIGKLSS 211
             +P  +   ++L  + L +N+F  +LP      P +Y L  +NN   G I      + S
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 212 TLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
             +  L  N    G LP   G  R   + D S N+ +G +P  LG L ++ +L LS N L
Sbjct: 454 LQMLSLARNKFF-GGLPDSFGSKRLENL-DLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPL 301
            G++P+ L +   LV+L LS+N  +G  P 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 99.5 bits (248), Expect = 1e-22
 Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 2/201 (0%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
           SN   G I   L     L  + + +N FSG  P        + FLDI  N   G +  + 
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 161 F-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL 219
           + M +L +L L  N F   LP + GS     L  + N+F+G++PR +G LS  L+++   
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLS 507

Query: 220 NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL 279
            N L+G +P EL   ++    D S+N+L+G +P S   +  + +L+LS N L G++P+ L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 280 CALDNLVNLSLSNNYFTGVGP 300
             +++LV +++S+N+  G  P
Sbjct: 568 GNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 78  ELAAPTLDGFID----QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP 133
           +++   L G I+     +P L +     NKF G + P       L  LD+S N+FSG  P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVP 492

Query: 134 VAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YL 191
             +   ++L  L +  N  +G +P ++   + L  L L++N    ++P +    P L  L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249
             + N+ +G IP+++G + S L++V   +N L G LP    FL       A N  L G
Sbjct: 553 DLSQNQLSGEIPKNLGNVES-LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP 250
           L   N    G IP  I KL   L  +    N + G +P  LG +    V D S N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL 282
           +P SLG L  +  LNL+GN L G+VP  L   
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 213 LIEVLFLNNL-LTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
            I+ L L+N  L G +P ++  LR  +  + S N + G +P SLG +  +E L+LS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
            G +PE L  L +L  L+L+ N  +G  P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 106 GTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQT 164
           G I   +++L +L  +++S N   G  P ++     L  LD+ +N F GS+P  +  + +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 165 LDVLFLNNNNFMQKLPQNLGSTP 187
           L +L LN N+   ++P  LG   
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 75  NGFELAAPTLDGF----IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG 130
           +G  L    L GF    I +L  L   + + N   G I P L  +  L  LD+S N F+G
Sbjct: 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 131 TFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
           + P ++     L  L++  N  +G VP  +
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 30/129 (23%)

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKL 179
           L + N    G  P  I     L  +++  N   G++PP +  + +L+VL L         
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--------- 473

Query: 180 PQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLN-NLLTGCLPYELG--FLRE 236
                         + N F GSIP S+G+L  T + +L LN N L+G +P  LG   L  
Sbjct: 474 --------------SYNSFNGSIPESLGQL--TSLRILNLNGNSLSGRVPAALGGRLLHR 517

Query: 237 ARVFDASNN 245
           A  F+ ++N
Sbjct: 518 AS-FNFTDN 525

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
PLN03150	623	hypothetical protein; Provisional	99.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.01
PRK15386	426	type III secretion protein GogB; Provisional	97.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.96
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.36
KOG4308	478	consensus LRR-containing protein [Function unknown	94.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.3
KOG4341	483	consensus F-box protein containing LRR [General fu	94.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.28
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.1
KOG4308	478	consensus LRR-containing protein [Function unknown	93.08
smart00370	26	LRR Leucine-rich repeats, outliers.	92.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.47
smart00370	26	LRR Leucine-rich repeats, outliers.	91.47
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.53
KOG4341	483	consensus F-box protein containing LRR [General fu	87.09
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-36  Score=324.42  Aligned_cols=290  Identities=32%  Similarity=0.561  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEE
Q 048561           19 LAAIYPIIQTFKNTITSDPFNITSTWI-GSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLF   97 (382)
Q Consensus        19 ~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L   97 (382)
                      .+.|+.||++||+++. +|.+...+|. ..|+|.|.|+.|+..+      +++.|+++++++.+ ..+..|..+++|+.|
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~~------~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSS------RVVSIDLSGKNISG-KISSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCCC------cEEEEEecCCCccc-cCChHHhCCCCCCEE
Confidence            3467889999999996 7878889997 4579999999997532      57888888888777 345667778888888


Q ss_pred             EcCCCcCcccCCcccC-CCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcC
Q 048561           98 HANSNKFSGTISPKLA-QLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNF  175 (382)
Q Consensus        98 ~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l  175 (382)
                      ++++|.+.+.+|..+. .+++|++|+|++|.+++.+|.  ..+++|++|+|++|.+.+.+|..+. +++|++|++++|.+
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            8888877777776544 667777777777776655553  2355566666666666555555444 55566666666655


Q ss_pred             CCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcC
Q 048561          176 MQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS  254 (382)
Q Consensus       176 ~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  254 (382)
                      .+.+|..++. .+|++|++++|.+.+.+|..+.++ .+|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            5555555544 455555555555555555555554 55555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCC
Q 048561          255 LGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIH  319 (382)
Q Consensus       255 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~  319 (382)
                      ++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++
T Consensus       256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            5555555555555555554455555455555555555555444332 2344444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.6e-30  Score=278.28  Aligned_cols=283  Identities=26%  Similarity=0.386  Sum_probs=204.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCC-----------------
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS-----------------  129 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-----------------  129 (382)
                      .+++.|++++|.+.+ ..+..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++                 
T Consensus       308 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        308 QNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence            345555565555555 23444555555555555555555555555555555555555555554                 


Q ss_pred             -------ccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561          130 -------GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG  200 (382)
Q Consensus       130 -------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~  200 (382)
                             +.+|..+..+++|+.|++++|.+++.+|..+. ++.|+.|++++|.+++.++..+.. .+|++|++++|.+.+
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence                   44444455555666666666666555555444 566666666666666666555444 667777777777777


Q ss_pred             ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                      .+|..+..  .+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.
T Consensus       467 ~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        467 GLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ecCccccc--ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence            77765532  5788899999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CCCc--ccccchhhhccCCCCCCCCCCcCccCCC
Q 048561          281 ALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LPDQ--RSTHECALFFLQPRFCFYPSWYNFIPCS  352 (382)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~--~~~~~~~~~~~np~~c~~~~~~~~~~c~  352 (382)
                      .+++|+.|+|++|++++..| .+..++.|+.|++++|++.+ +|+.  +.......+.||+..|+........+|.
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~  620 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK  620 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence            99999999999999998555 67889999999999999987 6753  2344556788999999865544556675

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=2e-28  Score=231.29  Aligned_cols=271  Identities=18%  Similarity=0.180  Sum_probs=176.8

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|+|++|.|+. +-.+.|.++.+|.+|.|++|+++...+..|.+|++|+.|+|..|+|...--..|.++++|+.|.|
T Consensus       174 ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            45555555555554 33444555555555555555555333334555555555555555554222334555555555566


Q ss_pred             cCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ..|.+. .+.+..+  +.++++|+|..|++...-..++.. ++|+.|++++|.|....++++.-- ++|.+|+|++|+++
T Consensus       253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRIT  330 (873)
T ss_pred             hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccc
Confidence            666655 3433333  677777777777776554444433 777788888888776666666543 77888888888887


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc---hhhcCCCCCCEEEcccccCcccCC-
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP---EVLCALDNLVNLSLSNNYFTGVGP-  300 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~-  300 (382)
                      ...+.+|..+..|+.|+|++|.++......|.++++|+.|||++|.|+..+.   ..|.++++|+.|+|.+|+|..++. 
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            7777778888888888888888775555667778888888888888876554   356678888888888888887765 


Q ss_pred             cccCCCCCCEEEccCCCCCCC-CCccccc--chhhhccCCCCCC
Q 048561          301 LCRKLIKNGVLDVNRNCIHYL-PDQRSTH--ECALFFLQPRFCF  341 (382)
Q Consensus       301 ~~~~l~~L~~L~L~~N~l~~l-p~~~~~~--~~~~~~~np~~c~  341 (382)
                      .+..++.|++|||.+|.|.++ |+.+..+  ..+.+-...++|+
T Consensus       411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD  454 (873)
T ss_pred             hhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence            678888899999999998887 4444332  2233334555676

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=2e-28  Score=231.22  Aligned_cols=249  Identities=18%  Similarity=0.126  Sum_probs=176.8

Q ss_pred             CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc--ccCCCC
Q 048561           89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV--FMQTLD  166 (382)
Q Consensus        89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~l~~L~  166 (382)
                      ..=.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|+++++|+.|+|.+|+|. .+....  ++++|+
T Consensus       170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQ  248 (873)
T ss_pred             CCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhh
Confidence            33344555555555554444444555555555555555555222334444555555555555554 221111  155555


Q ss_pred             EEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCc
Q 048561          167 VLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNN  245 (382)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  245 (382)
                      .|.|..|.+...-.+.|.. .++++|++..|++...-..+++++ ..|+.|++++|.+....++.+....+|+.|+|+.|
T Consensus       249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            5555555555444444433 678889999999886666678888 88999999999999889999999999999999999


Q ss_pred             cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC----cccCCCCCCEEEccCCCCCCC
Q 048561          246 RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP----LCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       246 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~N~l~~l  321 (382)
                      +|+...++.|..+..|++|+|++|.+...-..+|..+++|++|||++|.|+..+.    .+..+++|+.|++.+|+|..+
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            9998788889999999999999999997777889999999999999999998554    367799999999999999999


Q ss_pred             CCc----ccccchhhhccCCCC
Q 048561          322 PDQ----RSTHECALFFLQPRF  339 (382)
Q Consensus       322 p~~----~~~~~~~~~~~np~~  339 (382)
                      |..    +..++.+++.+|+..
T Consensus       408 ~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             chhhhccCcccceecCCCCcce
Confidence            852    334555666666653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=4.9e-27  Score=223.47  Aligned_cols=253  Identities=26%  Similarity=0.371  Sum_probs=175.8

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .-|+..|+++|.++|..+|.....++.+++|.|...++. .+|+.++.+.+|+.|.+++|++. .+...+..++.|+.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            357888999999998778888888888888888888887 77888888888888888888776 4444555666666666


Q ss_pred             ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      +..|++.. -+|..++ +..|..|+|++|++. ..|..+.. .++..|++++|+|. .+|..++--...|-.||+++|++
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            66665542 2444444 566666666666653 34444444 44555556666555 45544332224555555555555


Q ss_pred             CCCCchhcccCcCCCccccCCccCC-------------------------CCCCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561          224 TGCLPYELGFLREARVFDASNNRLT-------------------------GPLPCSLGCLEKIERLNLSGNLLYGQVPEV  278 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  278 (382)
                      . .+|..+..+..|++|+|++|.+.                         ..+|.++..+.+|..+|++.|.+. .+|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            4 34444455555555555555431                         246777788889999999999998 88999


Q ss_pred             hcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCcc
Q 048561          279 LCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQR  325 (382)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~  325 (382)
                      +..+++|+.|+|++|+|+........+.+|+.|++++|+++.+|+..
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av  287 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV  287 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence            99999999999999999987777777888999999999999888643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=2.3e-26  Score=208.92  Aligned_cols=261  Identities=24%  Similarity=0.285  Sum_probs=220.0

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..+..++++.|.+..  ....+.++..|++|++.+|++. ..|++++.+..++.++.++|++. .+|..+..+.+|++|+
T Consensus        45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            357788899998886  4556889999999999999998 78899999999999999999998 8899999999999999


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      +++|.+. .+++.++ +..|+.++..+|+++ ..|+.++. .++..+++.+|++. .+|...-++ +.|+.+|...|.+.
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m-~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM-KRLKHLDCNSNLLE  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHH-HHHHhcccchhhhh
Confidence            9999998 6777666 888999999999986 45555555 78889999999998 566555555 88999999988876


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc-CCCCCCEEEcccccCcccCCccc
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC-ALDNLVNLSLSNNYFTGVGPLCR  303 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~  303 (382)
                       .+|..++.+.+|+.|++..|+|. .+| .|.+++.|++|+++.|+|. .+|.... .++++..|||.+|+++..+..+.
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence             78888999999999999999998 677 7888899999999999998 6776655 88999999999999999888888


Q ss_pred             CCCCCCEEEccCCCCCCCCCccccc--chhhhccCCCC
Q 048561          304 KLIKNGVLDVNRNCIHYLPDQRSTH--ECALFFLQPRF  339 (382)
Q Consensus       304 ~l~~L~~L~L~~N~l~~lp~~~~~~--~~~~~~~np~~  339 (382)
                      .+.+|+.||+++|.|+++|....++  ..+.+.|||..
T Consensus       273 lLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR  310 (565)
T ss_pred             HhhhhhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence            8888999999999999998766643  44566788863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=4.1e-25  Score=210.50  Aligned_cols=264  Identities=27%  Similarity=0.376  Sum_probs=146.4

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCc-ccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFS-GTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ++++|.++.|++..  +.+.++.++.||.+.+..|++. .-+|..+-.+.-|..||||+|+++ ++|..+..-+++-.|+
T Consensus        56 kLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             hhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence            45555555555543  3444555555555555555543 124445555555555555555555 5555555555555555


Q ss_pred             ecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-Cc------------------------chhhhccCcccc
Q 048561          147 IRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TP------------------------ALYLTFANNKFT  199 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~------------------------L~~L~l~~n~l~  199 (382)
                      ||+|+|. .||...+  +..|-.|+|++|.+. .+|..+.. ..                        |+.|.+++.+-+
T Consensus       133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT  210 (1255)
T KOG0444|consen  133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT  210 (1255)
T ss_pred             cccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence            5555555 5554443  444555555555442 23322222 22                        333333333211


Q ss_pred             -cccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561          200 -GSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEV  278 (382)
Q Consensus       200 -~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  278 (382)
                       ..+|.++..+ .+|..+|++.|.+. ..|..+..+.+|+.|+|++|.|+ .+....+.+.+|++|++++|+++ .+|.+
T Consensus       211 l~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a  286 (1255)
T KOG0444|consen  211 LDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA  286 (1255)
T ss_pred             hhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence             2455566665 66777777777766 56677777777777777777777 45555556667777777777777 66777


Q ss_pred             hcCCCCCCEEEcccccCc--ccCCcc-----------------------cCCCCCCEEEccCCCCCCCCCccc---ccch
Q 048561          279 LCALDNLVNLSLSNNYFT--GVGPLC-----------------------RKLIKNGVLDVNRNCIHYLPDQRS---THEC  330 (382)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~--~~~~~~-----------------------~~l~~L~~L~L~~N~l~~lp~~~~---~~~~  330 (382)
                      ++.++.|+.|.+.+|+++  |++..+                       ..+.+|+.|.|++|++-.+|+.+-   .+..
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~v  366 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKV  366 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcce
Confidence            777777777777776543  444444                       444455555666666666665432   2333


Q ss_pred             hhhccCCCCC
Q 048561          331 ALFFLQPRFC  340 (382)
Q Consensus       331 ~~~~~np~~c  340 (382)
                      +++-.||.+-
T Consensus       367 LDlreNpnLV  376 (1255)
T KOG0444|consen  367 LDLRENPNLV  376 (1255)
T ss_pred             eeccCCcCcc
Confidence            4445566654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.88  E-value=1.1e-25  Score=204.47  Aligned_cols=247  Identities=24%  Similarity=0.317  Sum_probs=224.6

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...++.+++..|++..  .+++++.+..++.++.++|++. .+|+.++.+.+|+.|+.++|.+. ++|+.++.+-.|+.+
T Consensus        67 L~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL  142 (565)
T ss_pred             ccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence            4467899999999986  6778999999999999999999 89999999999999999999998 889999999999999


Q ss_pred             EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      +..+|+++ ++|+.++ +.+|..+++.+|++....|..+....+++++...|-+. .+|..++.+ ..|.-|++..|++.
T Consensus       143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNKIR  219 (565)
T ss_pred             hccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcccc
Confidence            99999999 7777766 88999999999999877776666688999999999888 999999998 89999999999998


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCC-CCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCccc
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLG-CLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR  303 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  303 (382)
                       .+| .|.++..|..|.++.|.|+ .+|.... .+.++..||+.+|+++ ..|+.++-+.+|++||+++|.|++.++.++
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLg  295 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLG  295 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccc
Confidence             566 8999999999999999999 6666554 8999999999999999 899999999999999999999999999999


Q ss_pred             CCCCCCEEEccCCCCCCCCCc
Q 048561          304 KLIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       304 ~l~~L~~L~L~~N~l~~lp~~  324 (382)
                      ++ +|+.|-+.+|.++.+-..
T Consensus       296 nl-hL~~L~leGNPlrTiRr~  315 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLRTIRRE  315 (565)
T ss_pred             cc-eeeehhhcCCchHHHHHH
Confidence            99 999999999999987543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=5.8e-23  Score=186.51  Aligned_cols=272  Identities=16%  Similarity=0.114  Sum_probs=185.4

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec-CCCCccCcccccCCCCCcEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN-NKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L  145 (382)
                      .+.+.|+|..|+|+. +++++|+.+++||.|||++|.|+.+-|++|.++++|..|.+.+ |+|+...-..|.++..|+.|
T Consensus        67 ~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            356889999999998 7999999999999999999999999999999999988776655 99995555678899999999


Q ss_pred             EecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc------------ccchhHHHhh
Q 048561          146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG------------SIPRSIGKLS  210 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~------------~lp~~l~~l~  210 (382)
                      .+.-|.+. .++...+  +++|..|.+.+|.+...--..+.. ..++.+.+..|.+..            ..|..++.. 
T Consensus       146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga-  223 (498)
T KOG4237|consen  146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA-  223 (498)
T ss_pred             hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc-
Confidence            99999998 6665544  899999999999885443335544 667777777766220            111111111 


Q ss_pred             hhHHHHHhhccccCCCCchhcccC-cCCCccccCCccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEE
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFL-REARVFDASNNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL  288 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  288 (382)
                      .-.....+.++++....+..|... ..+..--.+.+...+.-| ..|..+++|+.|+|++|+|+++-+.+|.+...+++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            112222333333333333222221 111111112222222223 346677888888888888887777778888888888


Q ss_pred             EcccccCcccCC-cccCCCCCCEEEccCCCCCCCC-Ccc---cccchhhhccCCCCCC
Q 048561          289 SLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP-DQR---STHECALFFLQPRFCF  341 (382)
Q Consensus       289 ~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp-~~~---~~~~~~~~~~np~~c~  341 (382)
                      .|..|+|..+.. .+..+..|+.|+|++|+|+.+. ..+   ..+..+.+++||+.|+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            888887776543 5677777888888888887753 222   2455677788999987

>PLN03210 Resistant to P

Probab=99.84  E-value=8e-20  Score=197.52  Aligned_cols=254  Identities=22%  Similarity=0.242  Sum_probs=178.7

Q ss_pred             CCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC
Q 048561           61 PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN  140 (382)
Q Consensus        61 ~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  140 (382)
                      +..+...+++.|+++++.+..  ++..+..+++|+.|+++++.....+| .++.+++|++|+|++|.....+|..+..++
T Consensus       605 P~~f~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~  681 (1153)
T PLN03210        605 PSNFRPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN  681 (1153)
T ss_pred             CCcCCccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC
Confidence            334455678888888888775  44557788899999998876554666 478888999999988776668888888999


Q ss_pred             CCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhH--------------
Q 048561          141 DLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI--------------  206 (382)
Q Consensus       141 ~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l--------------  206 (382)
                      +|++|++++|...+.+|..+.+++|+.|++++|...+.+|...  .++++|++.+|.+. .+|..+              
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~  758 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMK  758 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccc
Confidence            9999999987655578876678888888888887665555432  45667777777765 455432              


Q ss_pred             ---------------HHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcC
Q 048561          207 ---------------GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL  271 (382)
Q Consensus       207 ---------------~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  271 (382)
                                     ....++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..
T Consensus       759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR  837 (1153)
T ss_pred             hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence                           1112456777777776666677777777778888877765443566554 567777777777654


Q ss_pred             cccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccC-CCCCCCCCc
Q 048561          272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR-NCIHYLPDQ  324 (382)
Q Consensus       272 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~  324 (382)
                      ...+|..   ..+|+.|+|++|.|+.++..+..+++|+.|++++ |+++.+|..
T Consensus       838 L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        838 LRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             ccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence            3344432   2567777888887777766677777888888876 667777654

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.7e-20  Score=189.91  Aligned_cols=243  Identities=21%  Similarity=0.330  Sum_probs=190.9

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      ...|++++++++.  ++..+  .++|+.|++++|.++ .+|..+.  .+|++|++++|+++ .+|..+.  .+|+.|+|+
T Consensus       180 ~~~L~L~~~~Lts--LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLTT--IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcCc--CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            4679999988886  34333  258999999999999 6776654  58999999999998 6777654  579999999


Q ss_pred             CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561          149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP  228 (382)
Q Consensus       149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~  228 (382)
                      +|.+. .+|..+ ..+|+.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+.   .+|+.|++++|.++. +|
T Consensus       250 ~N~L~-~LP~~l-~s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        250 INRIT-ELPERL-PSALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CCccC-cCChhH-hCCCCEEECcCCccC-ccccccC-CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CC
Confidence            99998 787754 368999999999987 4676554 47999999999998 5776543   579999999999984 45


Q ss_pred             hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCC
Q 048561          229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN  308 (382)
Q Consensus       229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L  308 (382)
                      ..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+|+ .+|..+.  ++|+.|+|++|+|+.+++.+.  ..|
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL  390 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AAL  390 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHH
Confidence            433  3689999999999984 676653  78999999999998 6777664  689999999999998876543  368


Q ss_pred             CEEEccCCCCCCCCCcccc-------cchhhhccCCCCC
Q 048561          309 GVLDVNRNCIHYLPDQRST-------HECALFFLQPRFC  340 (382)
Q Consensus       309 ~~L~L~~N~l~~lp~~~~~-------~~~~~~~~np~~c  340 (382)
                      +.|++++|+|+.+|+.++.       ...+.+.+||...
T Consensus       391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            9999999999999875432       2334556677643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-21  Score=194.33  Aligned_cols=262  Identities=24%  Similarity=0.286  Sum_probs=212.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|+.+.|.+.. ...  -..-.+|++++++.|++. .+|+.++.+.+|+.|+..+|+++ .+|..+....+|+.|.+
T Consensus       220 ~l~~L~a~~n~l~~-~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  220 SLTALYADHNPLTT-LDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             chheeeeccCccee-ecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            45666666666653 111  112347899999999998 56788899999999999999997 88888889999999999


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC---CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS---TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~---~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      .+|.+. .+|.... ..+|++|+|..|++. .+|..+-.   ..+..++.+.|.+. ..|..=.+....|+.|++.+|.+
T Consensus       295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence            999998 7777766 889999999999985 44443322   34667888888877 55643333347899999999999


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCccc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR  303 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  303 (382)
                      +...-..+.+..+|+.|+|++|++.......+.+++.|++|+|++|+++ .+|..+..+..|++|...+|+|...+ .+.
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~  449 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELA  449 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence            9887778899999999999999999544455778999999999999999 88999999999999999999999877 889


Q ss_pred             CCCCCCEEEccCCCCCC--CCCcc--cccchhhhccCCCC
Q 048561          304 KLIKNGVLDVNRNCIHY--LPDQR--STHECALFFLQPRF  339 (382)
Q Consensus       304 ~l~~L~~L~L~~N~l~~--lp~~~--~~~~~~~~~~np~~  339 (382)
                      .++.|+.+|++.|+|+.  +|...  +.+..+++.||++.
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            99999999999999998  35433  46777888899974

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.2e-19  Score=185.09  Aligned_cols=227  Identities=25%  Similarity=0.311  Sum_probs=183.4

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..++.|++++|+++. + +..+  ..+|++|++++|.++ .+|..+.  .+|+.|+|++|.++ .+|..+.  .+|++|+
T Consensus       199 ~~L~~L~Ls~N~Lts-L-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELKS-L-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCCc-C-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            368999999999996 3 3333  358999999999998 6776654  57999999999998 7787764  5899999


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      +++|+++ .+|..+. .+|+.|++++|++++ +|..+. ..+++|++++|.++ .+|..+.   ++|+.|++++|.+++ 
T Consensus       269 Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        269 LFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-  339 (754)
T ss_pred             CcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-
Confidence            9999999 6776543 689999999999974 554443 47899999999998 5776543   579999999999885 


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc----
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC----  302 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~----  302 (382)
                      +|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|.|+ .+|..+.  .+|+.|++++|+|++++..+    
T Consensus       340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~  411 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR  411 (754)
T ss_pred             CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence            565553  79999999999998 5776553  68999999999999 6676654  47999999999999876533    


Q ss_pred             cCCCCCCEEEccCCCCCC
Q 048561          303 RKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       303 ~~l~~L~~L~L~~N~l~~  320 (382)
                      ..++.+..|++.+|.|+.
T Consensus       412 ~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        412 GEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             hcCCCccEEEeeCCCccH
Confidence            445788999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=8.1e-19  Score=178.34  Aligned_cols=219  Identities=26%  Similarity=0.317  Sum_probs=119.0

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|++..|+++.  ++.   ..++|++|++++|.++ .+|..   .++|++|++++|.++ .+|..+   .+|+.|++
T Consensus       223 ~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCCC--CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence            57778888888775  232   2467888888888877 45532   356677777777666 444322   34556666


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCC------------------CCcchhhhccCcccccccchhHHHh
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLG------------------STPALYLTFANNKFTGSIPRSIGKL  209 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~------------------~~~L~~L~l~~n~l~~~lp~~l~~l  209 (382)
                      ++|+++ .+|..  .++|+.|++++|++++ +|....                  ..+|++|++++|+++ .+|..    
T Consensus       290 s~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----  360 (788)
T PRK15387        290 FGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----  360 (788)
T ss_pred             cCCccc-ccccc--ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----
Confidence            666665 44432  3456666666666553 222110                  023444555555554 33321    


Q ss_pred             hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561          210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS  289 (382)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  289 (382)
                      +.+|..|++++|.+.. +|..   ..+|+.|++++|.|+ .+|..   .++|+.|++++|.|+ .+|...   .+|+.|+
T Consensus       361 p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~  428 (788)
T PRK15387        361 PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLS  428 (788)
T ss_pred             Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhh
Confidence            1334445555555442 3321   234556666666665 23432   245666666666665 344322   3455666


Q ss_pred             cccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          290 LSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       290 L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +++|+|+.++..+..+++|+.|+|++|+|++
T Consensus       429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        429 VYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hccCcccccChHHhhccCCCeEECCCCCCCc
Confidence            6666666555555566666666666666665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=3.6e-18  Score=173.68  Aligned_cols=194  Identities=25%  Similarity=0.332  Sum_probs=132.3

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      -..|+++.++++.  +|..+.  .+|+.|++.+|+++ .+|.   .+++|++|+|++|+|+ .+|..   .++|++|+++
T Consensus       203 ~~~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCCc--CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            3578999999986  444443  48999999999999 5664   2589999999999999 56653   4689999999


Q ss_pred             CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561          149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP  228 (382)
Q Consensus       149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~  228 (382)
                      +|.++ .+|..  ...|+.|++++|+++. +|..  ..+|++|++++|+++ .+|..    +..|+.|++++|.+++ +|
T Consensus       271 ~N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~~--p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP  338 (788)
T PRK15387        271 SNPLT-HLPAL--PSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LP  338 (788)
T ss_pred             CCchh-hhhhc--hhhcCEEECcCCcccc-cccc--ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cc
Confidence            99998 66652  3679999999999874 4542  257999999999998 45542    2456777888887764 44


Q ss_pred             hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561          229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                      .   ...+|+.|++++|+|++ +|...   .+|+.|++++|+|. .+|...   .+|+.|++++|+|++
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~  396 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS  396 (788)
T ss_pred             c---cccccceEecCCCccCC-CCCCC---cccceehhhccccc-cCcccc---cccceEEecCCcccC
Confidence            2   12467778888887773 44322   34444555555554 233221   234444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.76  E-value=1.5e-20  Score=186.66  Aligned_cols=242  Identities=25%  Similarity=0.328  Sum_probs=200.0

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...++.++++.|++.+  ++.++..+.+|+.++..+|.++ .+|..+....+|++|++.+|.+. .+|....++..|++|
T Consensus       240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             cccceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            4578999999999998  4588999999999999999997 78888999999999999999998 888889999999999


Q ss_pred             EecCCCCCCCCCcccc--c-CCCCEEeCCCCcCCCcCCcCCCC---CcchhhhccCcccccccchhHHHhhhhHHHHHhh
Q 048561          146 DIRFNFFTGSVPPQVF--M-QTLDVLFLNNNNFMQKLPQNLGS---TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL  219 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~--l-~~L~~L~L~~n~l~~~~p~~~~~---~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~  219 (382)
                      +|..|++. .+|+.+.  . ..|+.|+.+.|.+. ..| ..+.   ..|+.|++.+|.++...-..+... .+|+.|+|+
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLs  391 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLP-SYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLS  391 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccc-cccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeec
Confidence            99999998 7887554  2 34788888888764 334 2222   568889999999887665556665 789999999


Q ss_pred             ccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc-
Q 048561          220 NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-  298 (382)
Q Consensus       220 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-  298 (382)
                      +|++.......+.++..|+.|+||+|+++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|+++.. 
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence            99988544456788999999999999998 78888888899999999999998 777 677889999999999998874 


Q ss_pred             CCcccCCCCCCEEEccCCCC
Q 048561          299 GPLCRKLIKNGVLDVNRNCI  318 (382)
Q Consensus       299 ~~~~~~l~~L~~L~L~~N~l  318 (382)
                      .+.....++|++||+++|.-
T Consensus       469 l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  469 LPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhCCCcccceeeccCCcc
Confidence            33333447899999999973

>PLN03210 Resistant to P

Probab=99.76  E-value=2.3e-17  Score=178.57  Aligned_cols=276  Identities=16%  Similarity=0.136  Sum_probs=187.8

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|.+.++.+..  ++..| ...+|+.|++.+|.+. .++..+..+++|++|+|+++...+.+|. +..+++|++|+|
T Consensus       590 ~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            46666776666654  34334 4678888888888887 5777778888899999888764446664 778888999999


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      ++|.....+|..+. +++|+.|++++|...+.+|..+...+|++|++++|.....+|..    ..+|+.|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence            88876667887766 78899999988877777887765578888888888655455532    246778888888765 3


Q ss_pred             Cchhc------------------------------ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc
Q 048561          227 LPYEL------------------------------GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP  276 (382)
Q Consensus       227 ~~~~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  276 (382)
                      +|..+                              ...++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            33221                              112467777777777666778888888888888888775444667


Q ss_pred             hhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCccc---ccchhhhccC---------CCCCCCCC
Q 048561          277 EVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRS---THECALFFLQ---------PRFCFYPS  344 (382)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~---~~~~~~~~~n---------p~~c~~~~  344 (382)
                      ..+ .+++|+.|++++|......+.  ...+|+.|+|++|.|+.+|..+.   .+..+.+.+.         ...+..+.
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~  896 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE  896 (1153)
T ss_pred             CCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence            655 578888888888744333232  23578899999999999886432   2222222221         12234455


Q ss_pred             CcCccCCCCCCC
Q 048561          345 WYNFIPCSKVSP  356 (382)
Q Consensus       345 ~~~~~~c~~~~~  356 (382)
                      .+.+..|..+..
T Consensus       897 ~L~l~~C~~L~~  908 (1153)
T PLN03210        897 TVDFSDCGALTE  908 (1153)
T ss_pred             eeecCCCccccc
Confidence            556667776543

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=9.9e-20  Score=148.27  Aligned_cols=164  Identities=26%  Similarity=0.445  Sum_probs=113.5

Q ss_pred             cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCC
Q 048561           88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLD  166 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~  166 (382)
                      +-++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|+++ .+|..++.+++|+.|++.-|++. .+|..++ ++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345667777788888887 66777888888888888888887 77777888888888888888777 6676666 67777


Q ss_pred             EEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561          167 VLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR  246 (382)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  246 (382)
                      .|++.+|++.+.                      .+|..|+.+ ..|+.|++++|.+. .+|..++.+++|+.|.+..|.
T Consensus       106 vldltynnl~e~----------------------~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  106 VLDLTYNNLNEN----------------------SLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhccccccccc----------------------cCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            777777665431                      455556655 66777777777765 455666666777776666666


Q ss_pred             CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                      +- .+|..++.++.|++|++.+|.++ .+|..++
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            65 46666666666666666666666 4444443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-19  Score=164.45  Aligned_cols=257  Identities=19%  Similarity=0.152  Sum_probs=192.5

Q ss_pred             CCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC
Q 048561           62 DNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN  140 (382)
Q Consensus        62 ~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  140 (382)
                      .+.+..+++.|||+.|+|+. +-+++|.++..|..|-+.+ |+|+...-..|++|..|+.|.+.-|++.-...+.|..++
T Consensus        86 aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   86 AFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            44556789999999999998 7889999999998888777 899966667899999999999999999877778899999


Q ss_pred             CCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcCCC------------cCCcCCCC-CcchhhhccCcccccccchh
Q 048561          141 DLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ------------KLPQNLGS-TPALYLTFANNKFTGSIPRS  205 (382)
Q Consensus       141 ~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~------------~~p~~~~~-~~L~~L~l~~n~l~~~lp~~  205 (382)
                      +|..|.+..|.+. .++...+  +..++.+.+..|.+..            ..|..++. .-..-..+.++++...-+..
T Consensus       165 ~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k  243 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK  243 (498)
T ss_pred             hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence            9999999999998 7777444  7889999988886421            11111111 11112223333333122222


Q ss_pred             HHHhhhhHHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561          206 IGKLSSTLIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN  284 (382)
Q Consensus       206 l~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  284 (382)
                      +......+..-..+.+......| ..|..+++|+.|++++|+|++..+.+|.+...+++|.|..|+|...--..|.++..
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence            22211334444444454554555 34888999999999999999888889999999999999999998655667888999


Q ss_pred             CCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC
Q 048561          285 LVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       285 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  320 (382)
                      |++|+|++|+|+.+.+ .|..+..|..|+|-.|.+..
T Consensus       324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             ceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            9999999999998766 57888889999998888753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.9e-19  Score=146.55  Aligned_cols=165  Identities=24%  Similarity=0.376  Sum_probs=138.2

Q ss_pred             cCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchh
Q 048561          112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALY  190 (382)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~  190 (382)
                      +-.+.+.+.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..+. +++|++|+++.|.+.              
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------   92 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence            334567788899999998 88888999999999999999998 7777776 889999988877763              


Q ss_pred             hhccCcccccccchhHHHhhhhHHHHHhhccccCC-CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC
Q 048561          191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG-CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN  269 (382)
Q Consensus       191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  269 (382)
                                .+|.+|+.+ +.|+.||+.+|++.. .+|..|..++.|+.|.+++|.+. .+|..++.+++|+.|.+..|
T Consensus        93 ----------~lprgfgs~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   93 ----------ILPRGFGSF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             ----------cCccccCCC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence                      556666666 778899998888764 47888889999999999999998 78888999999999999999


Q ss_pred             cCcccCchhhcCCCCCCEEEcccccCcccCCcccCC
Q 048561          270 LLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKL  305 (382)
Q Consensus       270 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l  305 (382)
                      .+- .+|..++.+.+|++|.+.+|.++-++|.++.+
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence            888 78888999999999999999998888866544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=4e-19  Score=166.71  Aligned_cols=251  Identities=24%  Similarity=0.216  Sum_probs=135.5

Q ss_pred             EEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcc----cCCcccCCCCCCCEEEeecCCCCc------cCcccccCCCC
Q 048561           72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSG----TISPKLAQLPYLYELDISNNKFSG------TFPVAILGKND  141 (382)
Q Consensus        72 L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~  141 (382)
                      |+|+.+.+++......+..+..|+.|+++++.++.    .++..+...++|++|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            44555555433333444555556666666665532    133344455556666666655541      12233445556


Q ss_pred             CcEEEecCCCCCCCCCcccc-cCC---CCEEeCCCCcCCCc----CCcCCCC--CcchhhhccCcccccccchhHHHhh-
Q 048561          142 LSFLDIRFNFFTGSVPPQVF-MQT---LDVLFLNNNNFMQK----LPQNLGS--TPALYLTFANNKFTGSIPRSIGKLS-  210 (382)
Q Consensus       142 L~~L~Ls~n~l~~~~p~~~~-l~~---L~~L~L~~n~l~~~----~p~~~~~--~~L~~L~l~~n~l~~~lp~~l~~l~-  210 (382)
                      |++|++++|.+.+..+..+. +..   |++|++++|.+++.    +...+..  .++++|++++|.+++.....+.... 
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            66666666666533333222 222   66666666655421    1111111  3456666666665532222222111 


Q ss_pred             --hhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          211 --STLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       211 --~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                        ..|+.|++++|.+.+.    ++..+...++|+.|++++|.+++.    +...+..+++|++|++++|.+++.....+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence              3566677777666532    223344556888888888877633    233455667788888888887742222221


Q ss_pred             -----CCCCCCEEEcccccCcc--c---CCcccCCCCCCEEEccCCCCCCCC
Q 048561          281 -----ALDNLVNLSLSNNYFTG--V---GPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       281 -----~l~~L~~L~L~~N~l~~--~---~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                           ....|+.|++++|.++.  .   ...+..+++|+++++++|.++.-+
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~  294 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG  294 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence                 13678888888888762  1   123455677888888888887643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=9.2e-19  Score=164.25  Aligned_cols=250  Identities=22%  Similarity=0.172  Sum_probs=170.3

Q ss_pred             ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcc------cCCcccCCCCCCCEEEeecCCCCccCcccccC
Q 048561           68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSG------TISPKLAQLPYLYELDISNNKFSGTFPVAILG  138 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  138 (382)
                      .++.|+++++.+++.   .+...+...+.++.++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            477888888887542   133345667778888888887652      23445667888888888888887555555554


Q ss_pred             CCC---CcEEEecCCCCCCCCC----cccc-c-CCCCEEeCCCCcCCCcCCc----CCCC-CcchhhhccCcccccccch
Q 048561          139 KND---LSFLDIRFNFFTGSVP----PQVF-M-QTLDVLFLNNNNFMQKLPQ----NLGS-TPALYLTFANNKFTGSIPR  204 (382)
Q Consensus       139 l~~---L~~L~Ls~n~l~~~~p----~~~~-l-~~L~~L~L~~n~l~~~~p~----~~~~-~~L~~L~l~~n~l~~~lp~  204 (382)
                      +.+   |++|++++|.+++...    ..+. + ++|+.|++++|.+++....    .+.. .++++|++++|.+++....
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            444   8888888888763211    1222 4 6888888888888743222    2222 5688888888887743222


Q ss_pred             ----hHHHhhhhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCCCcCCC-----CCCCCCEEeCcCCcC
Q 048561          205 ----SIGKLSSTLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPLPCSLG-----CLEKIERLNLSGNLL  271 (382)
Q Consensus       205 ----~l~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l  271 (382)
                          .+... .+|+.|++++|.+.+.    +...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+
T Consensus       184 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         184 ALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence                22222 4788899999887643    234466788999999999998852222111     247999999999999


Q ss_pred             cc----cCchhhcCCCCCCEEEcccccCcccCC-----cccCC-CCCCEEEccCCCC
Q 048561          272 YG----QVPEVLCALDNLVNLSLSNNYFTGVGP-----LCRKL-IKNGVLDVNRNCI  318 (382)
Q Consensus       272 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l-~~L~~L~L~~N~l  318 (382)
                      +.    .+...+..+++|+.+++++|.++....     .+... +.|+.+++.+|.+
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            72    234456667899999999999986422     33444 6899999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=1.4e-15  Score=154.45  Aligned_cols=157  Identities=23%  Similarity=0.388  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCC-----CcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCC
Q 048561           18 RLAAIYPIIQTFKNTITSDPFNITSTWIGSDIC-----KYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLP   92 (382)
Q Consensus        18 ~~~~~~~aL~~~k~~~~~~~~~~~~~W~~~~~C-----~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~   92 (382)
                      ....|..||+++|+++. ++..  .+|.+ |+|     .|.|+.|...... ....++.|+|+++.+.+ .++..++.++
T Consensus       369 t~~~~~~aL~~~k~~~~-~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~-~~~~v~~L~L~~n~L~g-~ip~~i~~L~  442 (623)
T PLN03150        369 TLLEEVSALQTLKSSLG-LPLR--FGWNG-DPCVPQQHPWSGADCQFDSTK-GKWFIDGLGLDNQGLRG-FIPNDISKLR  442 (623)
T ss_pred             cCchHHHHHHHHHHhcC-Cccc--CCCCC-CCCCCcccccccceeeccCCC-CceEEEEEECCCCCccc-cCCHHHhCCC
Confidence            34567889999999986 3322  47975 455     7999999642211 12258999999999998 5677799999


Q ss_pred             CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeC
Q 048561           93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFL  170 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L  170 (382)
                      +|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|+|++|.++|.+|..+.  ..++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999998876  356788999


Q ss_pred             CCCcCCCcCC
Q 048561          171 NNNNFMQKLP  180 (382)
Q Consensus       171 ~~n~l~~~~p  180 (382)
                      .+|......|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            9887655444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.43  E-value=2.5e-15  Score=142.89  Aligned_cols=190  Identities=29%  Similarity=0.377  Sum_probs=136.1

Q ss_pred             CCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCc
Q 048561          118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANN  196 (382)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n  196 (382)
                      -...||+.|++. ++|..++.+..|+.+.|++|-+. .+|..+. +..|++|+++.|+++ .+|..++...|+.|-+++|
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecC
Confidence            356678888887 77777777777888888888877 6666665 777888888888764 6677777777777777777


Q ss_pred             ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc
Q 048561          197 KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP  276 (382)
Q Consensus       197 ~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  276 (382)
                      +++ .+|..++.+ ..|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+|
T Consensus       154 kl~-~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  154 KLT-SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             ccc-cCCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence            777 777777743 67777787777776 46667777777887777777777 456555544 3777778888777 777


Q ss_pred             hhhcCCCCCCEEEcccccCcccCCc---ccCCCCCCEEEccCC
Q 048561          277 EVLCALDNLVNLSLSNNYFTGVGPL---CRKLIKNGVLDVNRN  316 (382)
Q Consensus       277 ~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~L~~N  316 (382)
                      ..|..|..|++|-|.+|.+...+..   .+...-.++|+..-.
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            7777777788888877777765442   244444566665555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.43  E-value=1.8e-14  Score=137.18  Aligned_cols=213  Identities=26%  Similarity=0.347  Sum_probs=174.7

Q ss_pred             EEEcCCCCCCCCCCcccc-CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           71 SIDFNGFELAAPTLDGFI-DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      .|.|++-.+..- +.+.. -.+..-...+++.|++. ++|..+..+..|+.+.|..|.+. .+|..++++..|.+|||+.
T Consensus        54 ~l~Ls~rrlk~f-pr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEF-PRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcC-CCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            345555555441 22222 24556667899999999 89999999999999999999998 8999999999999999999


Q ss_pred             CCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561          150 NFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP  228 (382)
Q Consensus       150 n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~  228 (382)
                      |+++ .+|..++.--|+.|.+++|+++ .+|+.++. .++.+|+.+.|.+. .+|..++.+ .+|+.|.+..|.+. .+|
T Consensus       131 NqlS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l-~slr~l~vrRn~l~-~lp  205 (722)
T KOG0532|consen  131 NQLS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL-TSLRDLNVRRNHLE-DLP  205 (722)
T ss_pred             chhh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH-HHHHHHHHhhhhhh-hCC
Confidence            9999 8888888667999999999985 67777776 78899999999998 899999998 88999999999988 466


Q ss_pred             hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCC---CCCCEEEccccc
Q 048561          229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL---DNLVNLSLSNNY  294 (382)
Q Consensus       229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~  294 (382)
                      ..+.. -.|..||+++|++. .+|-.|..|..|++|-|.+|.+. ..|..++..   .--++|+..-++
T Consensus       206 ~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            66664 45899999999999 89999999999999999999998 677766533   234667777764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.36  E-value=1.5e-12  Score=126.03  Aligned_cols=195  Identities=31%  Similarity=0.390  Sum_probs=118.3

Q ss_pred             EEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC-CCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC
Q 048561           96 LFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN-DLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN  173 (382)
Q Consensus        96 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n  173 (382)
                      .+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|.... ++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            355555555322 223444455666666666666 5555555553 6666666666666 4543333 566666666666


Q ss_pred             cCCCcCCcCC-CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561          174 NFMQKLPQNL-GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP  252 (382)
Q Consensus       174 ~l~~~~p~~~-~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  252 (382)
                      +++.. +... ....++.|++++|++. .+|..+... ..|.++.+++|.+. ..+..+..+.++..+.+.+|++. .++
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence            66432 3222 3355666666666666 666655443 55777777777433 34556677777777777777776 335


Q ss_pred             cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561          253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  300 (382)
                      ..++.++++++|++++|.++ .++. +..+.+++.|++++|.+...++
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence            66667777788888888777 4444 6677777788887777765544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.36  E-value=1.3e-12  Score=126.55  Aligned_cols=196  Identities=29%  Similarity=0.384  Sum_probs=162.4

Q ss_pred             CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccC--CCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC
Q 048561          119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQ--TLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN  195 (382)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~--~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~  195 (382)
                      ..++++.|.+. .-...+..++.++.|++.+|.++ .++......  +|+.|++++|.+. .+|..+.. ..|+.|++++
T Consensus        96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            46889988885 23344566788999999999999 888777743  8999999999986 44444555 8899999999


Q ss_pred             cccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC
Q 048561          196 NKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV  275 (382)
Q Consensus       196 n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  275 (382)
                      |++. .+|...+.. ..|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++. .+
T Consensus       173 N~l~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         173 NDLS-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             chhh-hhhhhhhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            9999 777766555 78999999999998 56655567778999999999655 46667888899999999999988 55


Q ss_pred             chhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561          276 PEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       276 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +..+..++++++|++++|.++.+.. ++.+.+++.|++++|.+..++.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence            7888899999999999999998876 8889999999999999987643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=7.7e-13  Score=122.55  Aligned_cols=131  Identities=20%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             chhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC--cCCCCCCCCCEEe
Q 048561          188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP--CSLGCLEKIERLN  265 (382)
Q Consensus       188 L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~  265 (382)
                      ++.|.++.|+++..-...+...+++|..|++..|...........-+..|+.|||++|.+.. .+  ...+.++.|..|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence            44444444444422222222223445555555543211222223334445555555554431 12  2233444455555


Q ss_pred             CcCCcCcccC-chh-----hcCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCCC
Q 048561          266 LSGNLLYGQV-PEV-----LCALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIH  319 (382)
Q Consensus       266 L~~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~  319 (382)
                      ++.+.+...- |+.     ....++|+.|++..|+|.....  .+..+++|+.|.+..|.|+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            5555444211 111     1223455555555555543221  3344444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=6.8e-13  Score=117.56  Aligned_cols=207  Identities=20%  Similarity=0.095  Sum_probs=134.9

Q ss_pred             CcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC-CcCCCcCCcCCCC-C
Q 048561          109 SPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN-NNFMQKLPQNLGS-T  186 (382)
Q Consensus       109 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~-n~l~~~~p~~~~~-~  186 (382)
                      |-.+..+++|+.+.++.+.-. .+-+....-+.|.++.+.+..+. ..|....+..+....-.. .-..|..-..+.. .
T Consensus       207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            334445667777777766543 22222223356777777666554 333322222222221111 1111222222222 3


Q ss_pred             cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561          187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL  266 (382)
Q Consensus       187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  266 (382)
                      .|+++|+++|.|+ .+..++.-+ +.++.|+++.|.+...  ..++.+++|+.|||++|.++ .+..+-.++-+.++|.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            5777888888877 666655544 7788889998888733  34788899999999999888 55666667788899999


Q ss_pred             cCCcCcccCchhhcCCCCCCEEEcccccCcccC--CcccCCCCCCEEEccCCCCCCCCCc
Q 048561          267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG--PLCRKLIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~L~~N~l~~lp~~  324 (382)
                      ++|.|. . -..+..+-+|..||+++|+|....  ..++++|-|+.+.|.+|.|+.+++-
T Consensus       360 a~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  360 AQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            999886 2 234667788999999999998754  3688999999999999999998873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4e-12  Score=117.85  Aligned_cols=207  Identities=22%  Similarity=0.200  Sum_probs=141.8

Q ss_pred             CCCCCCCEEEcCCCcCcccCC--cccCCCCCCCEEEeecCCCCcc--CcccccCCCCCcEEEecCCCCCCCCCcccc--c
Q 048561           89 DQLPDLSLFHANSNKFSGTIS--PKLAQLPYLYELDISNNKFSGT--FPVAILGKNDLSFLDIRFNFFTGSVPPQVF--M  162 (382)
Q Consensus        89 ~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l  162 (382)
                      +++..|+.+.|.++.+. ..+  .....|++++.|||+.|-+...  +-.....+++|+.|+|+.|++.--......  +
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            45678888888888776 222  3566789999999999877622  223345789999999999988733333222  6


Q ss_pred             CCCCEEeCCCCcCCCcCCcCC--CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC-chhcccCcCCCc
Q 048561          163 QTLDVLFLNNNNFMQKLPQNL--GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL-PYELGFLREARV  239 (382)
Q Consensus       163 ~~L~~L~L~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  239 (382)
                      ++|+.|.+++|.++...-..+  ...+++.|++.+|.....-......+ +.|++|+|++|.+.... -...+.++.|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccccCCcccccccccccccccchhh
Confidence            889999999998874322222  22678889998884221222223333 67999999998876332 234678899999


Q ss_pred             cccCCccCCCC-CCcC-----CCCCCCCCEEeCcCCcCcccCc--hhhcCCCCCCEEEcccccCccc
Q 048561          240 FDASNNRLTGP-LPCS-----LGCLEKIERLNLSGNLLYGQVP--EVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       240 L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      |+++.+.+... .|+.     ...+++|++|++..|++. ..+  ..+..+.+|+.|.+-.|.++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence            99999988743 2222     245789999999999996 332  3455667888888888888753

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=7.1e-11  Score=120.25  Aligned_cols=90  Identities=26%  Similarity=0.493  Sum_probs=50.9

Q ss_pred             CCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561           94 LSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus        94 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..+. +++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44555555555555555555555555555555555555555555555555555555555555555444 55555555555


Q ss_pred             CcCCCcCCcCC
Q 048561          173 NNFMQKLPQNL  183 (382)
Q Consensus       173 n~l~~~~p~~~  183 (382)
                      |.+++.+|..+
T Consensus       500 N~l~g~iP~~l  510 (623)
T PLN03150        500 NSLSGRVPAAL  510 (623)
T ss_pred             CcccccCChHH
Confidence            55555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.05  E-value=9.5e-11  Score=114.03  Aligned_cols=241  Identities=21%  Similarity=0.192  Sum_probs=166.8

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..+..+++..|.+..  ....+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            345666677777764  23446778899999999999884 3333777899999999999998432  366677799999


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCc-CCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ-NLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++|.+. .+...-.+..|+.+++++|.+...-+. .-...+++.+.+.+|.+....  .+... ..+..+++..|.++.
T Consensus       147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~-~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLL-KKLVLLSLLDNKISK  222 (414)
T ss_pred             eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHH-HHHHHhhccccccee
Confidence            9999988 666655588899999999988755442 123377888889888876222  22222 456667888887763


Q ss_pred             CCchhcccCc--CCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc---CC
Q 048561          226 CLPYELGFLR--EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV---GP  300 (382)
Q Consensus       226 ~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~  300 (382)
                      .-+  +..+.  .|+.+++++|.+. ..+..+..+..+..|++..|.+...  ..+.....+..+....|.+...   ..
T Consensus       223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            322  22233  3888999999888 3435666778888999998888632  2344556677777778876632   11


Q ss_pred             --cccCCCCCCEEEccCCCCCCC
Q 048561          301 --LCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       301 --~~~~l~~L~~L~L~~N~l~~l  321 (382)
                        .....+.+..+.+.+|.+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cccccccccccccccccCccccc
Confidence              256667788888888887763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=7.1e-11  Score=104.90  Aligned_cols=199  Identities=22%  Similarity=0.207  Sum_probs=135.7

Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCCccc-ccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhcc-CcccccccchhHHHh
Q 048561          132 FPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFA-NNKFTGSIPRSIGKL  209 (382)
Q Consensus       132 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~-~n~l~~~lp~~l~~l  209 (382)
                      +|-.+..+.+|..+.++++.-. .|-... ..|.|+.+.+.+..+. ..|.-+....+...... ..-..|.+-..+...
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchH
Confidence            3444555678888888888755 333333 2578888887665432 12211111111111111 111223333333333


Q ss_pred             hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561          210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS  289 (382)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  289 (382)
                       +.|+++|++.|.++ .+..+..-+++++.|+++.|.|. .+. .+..+++|+.|||++|.++ .+..|-..+-++++|.
T Consensus       284 -q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 -QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             -hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence             67999999999998 56677888999999999999998 333 3788999999999999998 7778888889999999


Q ss_pred             cccccCcccCCcccCCCCCCEEEccCCCCCCCCCc--ccccch---hhhccCCC
Q 048561          290 LSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ--RSTHEC---ALFFLQPR  338 (382)
Q Consensus       290 L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~--~~~~~~---~~~~~np~  338 (382)
                      |++|.|... ..++.+-+|..||+++|+|..+.+.  +..+.|   ..+.+||.
T Consensus       359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            999998764 3567788899999999999987653  223334   34456664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=9.1e-11  Score=114.16  Aligned_cols=220  Identities=24%  Similarity=0.254  Sum_probs=160.7

Q ss_pred             CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEE
Q 048561           89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVL  168 (382)
Q Consensus        89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L  168 (382)
                      ..+..++.+.+..|.++ .+-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+ .+...-.+..|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchhhccchhhh
Confidence            35677778888888887 34445788999999999999998 55544778999999999999999 66666667789999


Q ss_pred             eCCCCcCCCcCCcCCCCCcchhhhccCcccccccchh-HHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccC
Q 048561          169 FLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS-IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL  247 (382)
Q Consensus       169 ~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~-l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  247 (382)
                      ++.+|.+... ...-....++.+++++|.+.. +... ...+ ..+..+++.+|.+..  ...+..+..+..+++..|.+
T Consensus       146 ~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~-~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  146 NLSGNLISDI-SGLESLKSLKLLDLSYNRIVD-IENDELSEL-ISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eeccCcchhc-cCCccchhhhcccCCcchhhh-hhhhhhhhc-cchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence            9999998642 222224778899999999883 3331 3444 679999999998863  23445556666678889988


Q ss_pred             CCCCCcCCCCCCC--CCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          248 TGPLPCSLGCLEK--IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       248 ~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +..-+  +..+..  |+.+++++|.+. .++..+..+..+..+++.+|++.... .+.....+..+....|.+..
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhcc
Confidence            73322  222333  899999999998 55466777888999999999887653 23445566666777777663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=2.5e-11  Score=109.75  Aligned_cols=242  Identities=19%  Similarity=0.164  Sum_probs=134.8

Q ss_pred             ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCC---cCcccCCcc-------cCCCCCCCEEEeecCCCCccCcc
Q 048561           68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSN---KFSGTISPK-------LAQLPYLYELDISNNKFSGTFPV  134 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~~~~p~  134 (382)
                      +++.++|++|.+...   .+...+.+.++|+..++++-   +....+|++       +..+++|++|+||+|.+.-..+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            567777777776541   12233455566776666552   222234432       33456677777777766532222


Q ss_pred             ----cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhH---
Q 048561          135 ----AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSI---  206 (382)
Q Consensus       135 ----~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l---  206 (382)
                          -+..+..|++|+|.+|.+. ......--..|.+|.  .+       ...+. .+|+.+..+.|++...-...+   
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHHHHH
Confidence                2345566777777777654 211111000011110  00       00011 234444444444331111111   


Q ss_pred             HHhhhhHHHHHhhccccCC----CCchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561          207 GKLSSTLIEVLFLNNLLTG----CLPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQVPEV  278 (382)
Q Consensus       207 ~~l~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~  278 (382)
                      .+-.+.|..+.+..|.+..    .+...+.++++|+.|||.+|.++..    +...+..+++|+.|++++|.+...-..+
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            1111345555555555431    1234678899999999999988732    3345667789999999999887543332


Q ss_pred             h-----cCCCCCCEEEcccccCcccC-----CcccCCCCCCEEEccCCCCC
Q 048561          279 L-----CALDNLVNLSLSNNYFTGVG-----PLCRKLIKNGVLDVNRNCIH  319 (382)
Q Consensus       279 ~-----~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~  319 (382)
                      +     ...++|+.|.+.+|.|+...     ..+...+.|..|+|++|++.
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            2     24689999999999998531     13566889999999999994

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=7.6e-10  Score=115.55  Aligned_cols=251  Identities=17%  Similarity=0.137  Sum_probs=157.7

Q ss_pred             cceeEEEcCCCC--CCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561           67 IALASIDFNGFE--LAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF  144 (382)
Q Consensus        67 ~~l~~L~L~~~~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  144 (382)
                      ..+++|-+.+|.  +.. +..++|..++.|++||+++|.--+.+|..++.|-+||+|++++..+. .+|..+.++..|.+
T Consensus       545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            358888888886  343 46667889999999999998766799999999999999999999998 99999999999999


Q ss_pred             EEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccc----cchhHHHhhhhHHHHHh
Q 048561          145 LDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGS----IPRSIGKLSSTLIEVLF  218 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~----lp~~l~~l~~~L~~L~l  218 (382)
                      |++.++.....++.... +.+|++|.+..-..... ...+.. ..++.|..-.......    -......+....+.+.+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccc-hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence            99999887656666665 89999999866541110 000111 2233322222221111    01112222233334444


Q ss_pred             hccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCC------CCCCCEEeCcCCcCcccCchhhcCCCCCCEEEccc
Q 048561          219 LNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC------LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN  292 (382)
Q Consensus       219 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  292 (382)
                      ..+.. ......+..+.+|+.|.+.++.+..........      ++++..+...++.-- ..+.+....++|+.|.+..
T Consensus       702 ~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~  779 (889)
T KOG4658|consen  702 EGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS  779 (889)
T ss_pred             ccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence            33222 234556788899999999988876433322221      112222222222211 2344455568999999998


Q ss_pred             ccCcc-cCCcccCCCCCCEEEccCCCCCCCC
Q 048561          293 NYFTG-VGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       293 N~l~~-~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      +.... +++....+..++.+.+..+.+.+++
T Consensus       780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~  810 (889)
T KOG4658|consen  780 CRLLEDIIPKLKALLELKELILPFNKLEGLR  810 (889)
T ss_pred             ccccccCCCHHHHhhhcccEEecccccccce
Confidence            86544 5555556666666667777766653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=7.9e-10  Score=93.47  Aligned_cols=107  Identities=32%  Similarity=0.342  Sum_probs=43.7

Q ss_pred             hhHHHHHhhccccCCCCchhcc-cCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhh-cCCCCCCEE
Q 048561          211 STLIEVLFLNNLLTGCLPYELG-FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL-CALDNLVNL  288 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L  288 (382)
                      ..+++|++.+|.+...  ..++ .+.+|+.|++++|.|+. +. .+..++.|++|++++|.|+ .+...+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            3578888888888742  2344 57889999999999984 43 5778899999999999998 454444 357899999


Q ss_pred             EcccccCcccCC--cccCCCCCCEEEccCCCCCCCC
Q 048561          289 SLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       289 ~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      ++++|+|.....  .+..+++|+.|+|.+|+++.-+
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            999999987543  5778999999999999988654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=1.6e-09  Score=75.38  Aligned_cols=61  Identities=30%  Similarity=0.457  Sum_probs=42.8

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCC
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFF  152 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  152 (382)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777755555677777777777777777755556677777777777777764

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.8e-09  Score=91.28  Aligned_cols=101  Identities=23%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             ceeEEEcCCCCCCCCCCccccC-CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccc-cCCCCCcEE
Q 048561           68 ALASIDFNGFELAAPTLDGFID-QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI-LGKNDLSFL  145 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L  145 (382)
                      .++.|+|.+|+|+.  +.. ++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|+|+ .+...+ ..+++|++|
T Consensus        20 ~~~~L~L~~n~I~~--Ie~-L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQIST--IEN-LGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc--ccc-hhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            35556666666654  222 33 3556666666666665 222 3555566666666666665 333223 235666666


Q ss_pred             EecCCCCCCCCCccc---ccCCCCEEeCCCCcC
Q 048561          146 DIRFNFFTGSVPPQV---FMQTLDVLFLNNNNF  175 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~---~l~~L~~L~L~~n~l  175 (382)
                      ++++|+|. .+.+..   .+++|++|++.+|.+
T Consensus        94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence            66666655 222211   145556666555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.82  E-value=4.1e-10  Score=110.59  Aligned_cols=197  Identities=21%  Similarity=0.183  Sum_probs=103.2

Q ss_pred             CCCCEEEeecCCCCccC-cccccCCCCCcEEEecCCCCCCCCCccccc-CCCCEEeCCCCcCC----------CcCCcCC
Q 048561          116 PYLYELDISNNKFSGTF-PVAILGKNDLSFLDIRFNFFTGSVPPQVFM-QTLDVLFLNNNNFM----------QKLPQNL  183 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l-~~L~~L~L~~n~l~----------~~~p~~~  183 (382)
                      ++++.|.+-.-.=.+.. |-.|..+..|++|.|.++.+. ..-....+ ..|++|... |.+.          |.+-.++
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~  161 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP  161 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch
Confidence            44444444333222222 556677788888888888876 32222222 235554332 2111          1111111


Q ss_pred             CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCc-CCCCCCCCC
Q 048561          184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPC-SLGCLEKIE  262 (382)
Q Consensus       184 ~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~  262 (382)
                      .-.+|...++++|.+. .+..++.-+ +.++.|+|+.|+++...  .+..+++|++|||+.|.+. .+|. ...++ +|+
T Consensus       162 ~Wn~L~~a~fsyN~L~-~mD~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~  235 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLV-LMDESLQLL-PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQ  235 (1096)
T ss_pred             hhhhHhhhhcchhhHH-hHHHHHHHH-HHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hhe
Confidence            1134556666666665 444444433 56667777777665332  5666666777777777666 3332 12222 366


Q ss_pred             EEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCCCCCC
Q 048561          263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       263 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .|.+++|.++ .+ ..+.++.+|+.||+++|-|.+...  -++.+..|+.|.|.+|.+..-|
T Consensus       236 ~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  236 LLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             eeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            6666666665 22 234556666666666666655322  2445556666666666665544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.78  E-value=4.8e-10  Score=101.55  Aligned_cols=222  Identities=22%  Similarity=0.235  Sum_probs=134.4

Q ss_pred             cCCCCCCCEEEcCCCcCcc----cCCcccCCCCCCCEEEeecC---CCCccCccc-------ccCCCCCcEEEecCCCCC
Q 048561           88 IDQLPDLSLFHANSNKFSG----TISPKLAQLPYLYELDISNN---KFSGTFPVA-------ILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~  153 (382)
                      +..+..++.+++++|.+..    .+...+.+.++|+..++++-   ++...+|..       +-.+++|++|+||.|.|.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4455677777777776642    23344556667777777652   222233332       234456777777777665


Q ss_pred             CCCCcccc-----cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC--
Q 048561          154 GSVPPQVF-----MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC--  226 (382)
Q Consensus       154 ~~~p~~~~-----l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~--  226 (382)
                      -.-+..+.     ...|++|.|.+|.+...-...++ ..|.++.  .++..   +    . ...|+++...+|++-..  
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~kk~---~----~-~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VNKKA---A----S-KPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HHhcc---C----C-CcceEEEEeeccccccccH
Confidence            33333222     34566666666654211110000 1222222  22111   0    0 24677788888887532  


Q ss_pred             --CchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCc
Q 048561          227 --LPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFT  296 (382)
Q Consensus       227 --~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  296 (382)
                        +...|...+.|+.+.++.|.|...    +...+..+++|+.|||.+|-|+..    +...+..+++|+.|++++|.+.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence              223456678899999999988632    224567889999999999998742    3456677889999999999987


Q ss_pred             ccCC-----c-ccCCCCCCEEEccCCCCCC
Q 048561          297 GVGP-----L-CRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       297 ~~~~-----~-~~~l~~L~~L~L~~N~l~~  320 (382)
                      ....     . -...+.|+.|.+.+|.|+.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            6432     1 2457899999999999886

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=3.1e-09  Score=73.94  Aligned_cols=58  Identities=36%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             CCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCC
Q 048561          260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNC  317 (382)
Q Consensus       260 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~  317 (382)
                      +|++|++++|+|+...+.+|..+++|++|++++|+++.+.+ .+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555553333445555555555555555555433 34555555555555554

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.68  E-value=3e-08  Score=63.45  Aligned_cols=39  Identities=28%  Similarity=0.625  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhCcCCCCCCCCCCCC---CCCCCcCceeeC
Q 048561           20 AAIYPIIQTFKNTITSDPFNITSTWIG---SDICKYKGFYCG   58 (382)
Q Consensus        20 ~~~~~aL~~~k~~~~~~~~~~~~~W~~---~~~C~w~gv~c~   58 (382)
                      ..|++||++||+++..++...+.+|..   .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            468899999999999778889999984   589999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.66  E-value=1.2e-09  Score=107.41  Aligned_cols=233  Identities=21%  Similarity=0.174  Sum_probs=147.4

Q ss_pred             CCCCcEEEecCCCCCCCC-Ccccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc----------cccchh
Q 048561          139 KNDLSFLDIRFNFFTGSV-PPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT----------GSIPRS  205 (382)
Q Consensus       139 l~~L~~L~Ls~n~l~~~~-p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~----------~~lp~~  205 (382)
                      +++++.|.+-.-.-.+.. |-.++ +.+|++|.+.++.+.. .-+-... ..|++|..++. +.          |.+..+
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccc
Confidence            344555554433322222 44444 7899999999998853 1111111 23333332221 11          122222


Q ss_pred             HHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCC
Q 048561          206 IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL  285 (382)
Q Consensus       206 l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  285 (382)
                      +..  ..|...+.+.|.+. ....++.-++.|+.|+|++|+++..  +.+..+++|++|||++|.++ .+|..-..-..|
T Consensus       161 ~~W--n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L  234 (1096)
T KOG1859|consen  161 PVW--NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKL  234 (1096)
T ss_pred             hhh--hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhh
Confidence            222  46888899999987 5667888899999999999999843  26778999999999999998 666432222349


Q ss_pred             CEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCccc-----ccchhhhccCCCCCCC------CCCc--------
Q 048561          286 VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRS-----THECALFFLQPRFCFY------PSWY--------  346 (382)
Q Consensus       286 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~-----~~~~~~~~~np~~c~~------~~~~--------  346 (382)
                      +.|.+++|.++... .+.++.+|+.||+++|-|.+..+..+     .+..+-+.|||.-|..      ..++        
T Consensus       235 ~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~  313 (1096)
T KOG1859|consen  235 QLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVK  313 (1096)
T ss_pred             eeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcc
Confidence            99999999998754 56788999999999999998765332     3445567799988832      1111        


Q ss_pred             ---CccCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 048561          347 ---NFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNR  380 (382)
Q Consensus       347 ---~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (382)
                         +-..-.+++.|-+....++.++.|..|..-.|.|
T Consensus       314 f~LDgk~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~  350 (1096)
T KOG1859|consen  314 FKLDGKALGGREFWKRQSGVSHRSSRPASYGFYSPAR  350 (1096)
T ss_pred             eEecceeccchhhhhhhhheecCCCCCCCCCCCCchh
Confidence               1112234455655555555555555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.53  E-value=4.1e-08  Score=102.78  Aligned_cols=245  Identities=18%  Similarity=0.144  Sum_probs=154.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCc--CcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNK--FSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      .++...+-+|++..  .... ...+.|++|-+.+|.  +.......|..++.|+.|||++|.--+.+|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~~--~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEH--IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhh--ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            56777777776654  2222 244579999999986  553444558889999999999987777999999999999999


Q ss_pred             EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc--cccchhHHHhhhhHHHHHhhcc
Q 048561          146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT--GSIPRSIGKLSSTLIEVLFLNN  221 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L~l~~n  221 (382)
                      +++++.+. .+|..+. +..|.+|++..+.....++..... .+|++|.+......  ...-..+.++ ..|+.+.....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~~~  678 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL-EHLENLSITIS  678 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc-cchhhheeecc
Confidence            99999999 8998887 899999999988776666665553 77888877655422  1222223332 34444444222


Q ss_pred             ccCCCCchhcccCcCCC----ccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCC------CCCCEEEcc
Q 048561          222 LLTGCLPYELGFLREAR----VFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL------DNLVNLSLS  291 (382)
Q Consensus       222 ~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~L~  291 (382)
                      ..  .+-..+..+..|.    .+.+.++... .....+..+.+|+.|.+.++.+......+....      +++..+...
T Consensus       679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~  755 (889)
T KOG4658|consen  679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL  755 (889)
T ss_pred             hh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence            21  0111122333332    3333333322 455667788999999999998864333332221      223333333


Q ss_pred             cccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          292 NNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       292 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      ++..-..+....-.++|+.|.+.+....+
T Consensus       756 ~~~~~r~l~~~~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  756 NCHMLRDLTWLLFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             ccccccccchhhccCcccEEEEecccccc
Confidence            33222222223456799999999876554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=2.6e-08  Score=87.62  Aligned_cols=235  Identities=21%  Similarity=0.212  Sum_probs=133.5

Q ss_pred             ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCc---CcccCC-------cccCCCCCCCEEEeecCCCCccCcc
Q 048561           68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNK---FSGTIS-------PKLAQLPYLYELDISNNKFSGTFPV  134 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~---l~~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~p~  134 (382)
                      .++.++|+||.|...   -+...+++-.+|+..+++.-.   ....++       +++..|+.|+..+||+|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            577888888887652   122334556677777766531   112222       2455677888888888877655544


Q ss_pred             c----ccCCCCCcEEEecCCCCCCCCCc-ccc--------------cCCCCEEeCCCCcCCCcCCcC----CCC-Ccchh
Q 048561          135 A----ILGKNDLSFLDIRFNFFTGSVPP-QVF--------------MQTLDVLFLNNNNFMQKLPQN----LGS-TPALY  190 (382)
Q Consensus       135 ~----l~~l~~L~~L~Ls~n~l~~~~p~-~~~--------------l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~~  190 (382)
                      .    +++-+.|++|.+++|.+. .+.. .++              .|.|+.+....|.+......-    +.. ..+++
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            3    445677888888877765 2221 111              255666666666553211100    000 12333


Q ss_pred             hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeC
Q 048561          191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNL  266 (382)
Q Consensus       191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L  266 (382)
                      +.+..|.|.   |.++..+                 .-..+..+.+|+.||+++|.++-.    +...+..++.|+.|++
T Consensus       190 vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         190 VKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             EEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            334444333   2211111                 111235567888899988887632    2233455677888998


Q ss_pred             cCCcCcccCchhh------cCCCCCCEEEcccccCccc-CC-----c--ccCCCCCCEEEccCCCCCCCCC
Q 048561          267 SGNLLYGQVPEVL------CALDNLVNLSLSNNYFTGV-GP-----L--CRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       267 ~~N~l~~~~p~~~------~~l~~L~~L~L~~N~l~~~-~~-----~--~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      .+|-++..-...+      ...++|..|-..+|.+.+. +.     .  -..++-|..|.+.+|+|.+..+
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d  320 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD  320 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence            8888774333222      1347888888888877652 11     1  2567778888888999887654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=9.2e-07  Score=79.03  Aligned_cols=106  Identities=20%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             eeEEEcCCCCCCCCCCcccc-CCCCCCCEEEcCCCcCcc--cCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           69 LASIDFNGFELAAPTLDGFI-DQLPDLSLFHANSNKFSG--TISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ++.+.+.+..|........| ...++++.+||.+|.|..  .+-.-+.++|.|++|+|+.|.+...+-..-..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            33445555555432111112 245677777777777752  233334567777777777777763322111244577777


Q ss_pred             EecCCCCCCCCCccc-c-cCCCCEEeCCCCc
Q 048561          146 DIRFNFFTGSVPPQV-F-MQTLDVLFLNNNN  174 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~  174 (382)
                      .|.+..+...--..+ . +|.++.|+++.|.
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            777776652222111 1 5666777777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.2e-08  Score=88.15  Aligned_cols=173  Identities=17%  Similarity=0.081  Sum_probs=91.2

Q ss_pred             CCCEEEeecCCCCc-cCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcC----CCC-Ccch
Q 048561          117 YLYELDISNNKFSG-TFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQN----LGS-TPAL  189 (382)
Q Consensus       117 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~  189 (382)
                      .|++|||++..|+. .+...+..+.+|+.|.+.++++...+-..+. ...|+.|+++.+.  |.-..+    +.. ..|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence            36666666655541 1222344556666666666666544433333 4556666666542  111111    111 3455


Q ss_pred             hhhccCcccccc-cchhHHHhhhhHHHHHhhccccC---CCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEE
Q 048561          190 YLTFANNKFTGS-IPRSIGKLSSTLIEVLFLNNLLT---GCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERL  264 (382)
Q Consensus       190 ~L~l~~n~l~~~-lp~~l~~l~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L  264 (382)
                      +|+++.+.+... +...+.....+|+.|++++..-.   ..+..-...+++|..|||++|. ++......|.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            555655554322 22233444456777777765422   1111223567788888888764 333233345567778888


Q ss_pred             eCcCCcCcccCchhh---cCCCCCCEEEcccc
Q 048561          265 NLSGNLLYGQVPEVL---CALDNLVNLSLSNN  293 (382)
Q Consensus       265 ~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N  293 (382)
                      .++.|..  ++|+.+   ...++|.+|++.++
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            8877763  455543   34567777777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=8.9e-07  Score=56.79  Aligned_cols=39  Identities=33%  Similarity=0.374  Sum_probs=21.7

Q ss_pred             CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561          284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      +|++|++++|+|+.+++.+.++++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            455666666666655544556666666666666665544

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=8.5e-08  Score=76.05  Aligned_cols=111  Identities=24%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             hhHHHHHhhccccCCC--CchhcccCcCCCccccCCccCCCCCCcCCC-CCCCCCEEeCcCCcCcccCchhhcCCCCCCE
Q 048561          211 STLIEVLFLNNLLTGC--LPYELGFLREARVFDASNNRLTGPLPCSLG-CLEKIERLNLSGNLLYGQVPEVLCALDNLVN  287 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  287 (382)
                      ..+..++++++.+...  .+..+.....|+..+|++|.+. .+|..|. .++.++.|++++|.|+ .+|..+..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3566677777776532  1233445566777899999999 4555554 5678999999999999 88988999999999


Q ss_pred             EEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561          288 LSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       288 L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      |+++.|.+...+..+..+.++-.||..+|.+..+|-
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            999999999887777779999999999999999884

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.6e-06  Score=54.64  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=19.1

Q ss_pred             CCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC
Q 048561          117 YLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  153 (382)
                      +|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44444555555555555555555

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=2.7e-07  Score=73.22  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.++|++|.+.. .++.+-..++.++.|++++|.+. .+|..++.++.|+.|++++|.+. ..|..+..+.+|-.|+.
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            45556666666654 23333334556666666666666 45656666666666666666665 55555555666666666


Q ss_pred             cCCCCCCCCCcccc
Q 048561          148 RFNFFTGSVPPQVF  161 (382)
Q Consensus       148 s~n~l~~~~p~~~~  161 (382)
                      .+|.+. .+|...+
T Consensus       131 ~~na~~-eid~dl~  143 (177)
T KOG4579|consen  131 PENARA-EIDVDLF  143 (177)
T ss_pred             CCCccc-cCcHHHh
Confidence            666655 5555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=7.4e-07  Score=79.63  Aligned_cols=219  Identities=18%  Similarity=0.175  Sum_probs=129.6

Q ss_pred             CCCEEEcCCCcCcccCC-cccC-CCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEecCCCCCCCCCcc-cccCCCCE
Q 048561           93 DLSLFHANSNKFSGTIS-PKLA-QLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VFMQTLDV  167 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~l~~L~~  167 (382)
                      .+..|.+.++.|..... ..|+ .+..++.|||.+|.|+.  .+-..+.+||.|++|+|+.|++...|... ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44456666665542111 1222 35789999999999983  34445678999999999999988544433 33678999


Q ss_pred             EeCCCCcCCCcCCcCCCC--CcchhhhccCccccc--ccchhHHHhh---------hhHHHHHhhccccCCCCchhcccC
Q 048561          168 LFLNNNNFMQKLPQNLGS--TPALYLTFANNKFTG--SIPRSIGKLS---------STLIEVLFLNNLLTGCLPYELGFL  234 (382)
Q Consensus       168 L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~--~lp~~l~~l~---------~~L~~L~l~~n~l~~~~~~~~~~l  234 (382)
                      |.|.+..+....-.++..  ..+++|+++.|.+.-  .-..++....         ..+..+..+-|++..       -+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-------~F  198 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-------IF  198 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-------hc
Confidence            999998876543333322  556677777773220  0001111111         233344444444332       24


Q ss_pred             cCCCccccCCccCCCC-CCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEEcccccCcccCC-------cccCC
Q 048561          235 REARVFDASNNRLTGP-LPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLSLSNNYFTGVGP-------LCRKL  305 (382)
Q Consensus       235 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~l  305 (382)
                      +++..+-+..|.+... .-..+..++.+..|+|+.|+|.... -+++.+++.|.-|.+++|.+.....       .++.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            4566666666665422 1223445566678888888886322 2456677888888888888765321       25777


Q ss_pred             CCCCEEEccCCCCCC
Q 048561          306 IKNGVLDVNRNCIHY  320 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~  320 (382)
                      ++++.|+  +-.|+.
T Consensus       279 ~~v~vLN--GskIss  291 (418)
T KOG2982|consen  279 TKVQVLN--GSKISS  291 (418)
T ss_pred             cceEEec--Ccccch
Confidence            7777765  335544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.01  E-value=1.3e-06  Score=77.08  Aligned_cols=222  Identities=18%  Similarity=0.145  Sum_probs=134.4

Q ss_pred             cCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCC---CCccCcc-------cccCCCCCcEEEecCCCCC
Q 048561           88 IDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNK---FSGTFPV-------AILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~Ls~n~l~  153 (382)
                      +..+..++.++|++|.|...    +...+++-.+|+..+++.-.   ....+++       .+.++++|+..+||.|.|.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34567888999999988643    33345666788888887632   2222332       3457899999999999988


Q ss_pred             CCCCcccc-----cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561          154 GSVPPQVF-----MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP  228 (382)
Q Consensus       154 ~~~p~~~~-----l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~  228 (382)
                      ...|+...     ...|++|.|++|.+...-..-++ ..|.  .+.+|+-.       ++. +.|++.+...|++..-..
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~--~la~nKKa-------a~k-p~Le~vicgrNRlengs~  174 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALF--HLAYNKKA-------ADK-PKLEVVICGRNRLENGSK  174 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHH--HHHHHhhh-------ccC-CCceEEEeccchhccCcH
Confidence            77776543     46789999988876322111111 1111  11222211       111 334555555555432111


Q ss_pred             ----hhcccCcCCCccccCCccCCCCCC-----cCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccC
Q 048561          229 ----YELGFLREARVFDASNNRLTGPLP-----CSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYF  295 (382)
Q Consensus       229 ----~~~~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l  295 (382)
                          ..+..-.+|+.+.+..|.|...--     ..+..+.+|+.||+++|.|+-.    +..+++.++.|+.|.+.+|-+
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence                112223578888888888763211     1233568899999999988732    334566778889999999877


Q ss_pred             cccCC--cc-----cCCCCCCEEEccCCCCCC
Q 048561          296 TGVGP--LC-----RKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       296 ~~~~~--~~-----~~l~~L~~L~L~~N~l~~  320 (382)
                      +....  .+     ...++|..|...+|.+..
T Consensus       255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             ccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            65322  11     346778888888887654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=1.8e-05  Score=75.25  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=43.3

Q ss_pred             cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC-CCCCCCCcccccCCCC
Q 048561           88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN-FFTGSVPPQVFMQTLD  166 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~l~~L~  166 (382)
                      +..+.+++.|++++|.++ .+|. +  -.+|++|.++++.--..+|..+.  .+|++|++++| .+. .+|.     .|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-----ccc
Confidence            344577888888888776 4551 1  13588888876332225555442  46777777777 333 4443     456


Q ss_pred             EEeCCCC
Q 048561          167 VLFLNNN  173 (382)
Q Consensus       167 ~L~L~~n  173 (382)
                      .|++..+
T Consensus       116 ~L~L~~n  122 (426)
T PRK15386        116 SLEIKGS  122 (426)
T ss_pred             eEEeCCC
Confidence            6665544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=4.5e-08  Score=87.27  Aligned_cols=199  Identities=14%  Similarity=0.128  Sum_probs=128.9

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCC-CCCCEEEcCCCcCcc-cCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQL-PDLSLFHANSNKFSG-TISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      .+..+.+...-+..+-+...+.-+ +.|++|||++..++. .+-.-+..+.+|+.|.|.++++...+...+..-.+|+.|
T Consensus       160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            344555554433332222222222 368899999888763 222345678889999999999988888888888899999


Q ss_pred             EecCCC-CCCCCCcccc---cCCCCEEeCCCCcCCCcCCcC-CCC--CcchhhhccCcccc--cccchhHHHhhhhHHHH
Q 048561          146 DIRFNF-FTGSVPPQVF---MQTLDVLFLNNNNFMQKLPQN-LGS--TPALYLTFANNKFT--GSIPRSIGKLSSTLIEV  216 (382)
Q Consensus       146 ~Ls~n~-l~~~~p~~~~---l~~L~~L~L~~n~l~~~~p~~-~~~--~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L  216 (382)
                      +++.+. ++ +......   +..|..|+++-|.++...-.. +..  .++..|++++..-.  ...-+.+..-++++..|
T Consensus       240 nlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  240 NLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             ccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            998764 33 2222111   578888999888765433222 222  56778888876421  11122333335789999


Q ss_pred             Hhhccc-cCCCCchhcccCcCCCccccCCccCCCCCCcC---CCCCCCCCEEeCcCC
Q 048561          217 LFLNNL-LTGCLPYELGFLREARVFDASNNRLTGPLPCS---LGCLEKIERLNLSGN  269 (382)
Q Consensus       217 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~N  269 (382)
                      |+++|. ++......|..+..|++|.++.|..-  +|..   +...++|.+|++.++
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            999865 45444566788999999999998743  4443   456789999998775

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=4.7e-05  Score=72.49  Aligned_cols=139  Identities=15%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             cCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhh
Q 048561          112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL  191 (382)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L  191 (382)
                      +..+.+++.|++++|.++ .+|. +  ..+|++|.++++.-...+|..+ ..+|++|.+++|.....+|..     |+.|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s-----Le~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES-----VRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc-----cceE
Confidence            445689999999999988 6662 2  2469999998854433666543 468999999998444455544     5555


Q ss_pred             hccCcccccccchhHHHhhhhHHHHHhhccccCCC--CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC
Q 048561          192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC--LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN  269 (382)
Q Consensus       192 ~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  269 (382)
                      ++..+... .    +..++++|+.|.+.+++....  .+.  .-.++|++|++++|... ..|..+.  .+|+.|.++.+
T Consensus       118 ~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCc-c----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            66555432 1    223445677777654321100  110  11257888888887765 3444333  57888888766


Q ss_pred             c
Q 048561          270 L  270 (382)
Q Consensus       270 ~  270 (382)
                      .
T Consensus       188 ~  188 (426)
T PRK15386        188 Q  188 (426)
T ss_pred             c
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.63  E-value=0.00012  Score=62.16  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc--ccccCCCCCcEE
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP--VAILGKNDLSFL  145 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L  145 (382)
                      ....+||+.|++..   ...|..+++|.+|.+.+|+|+.+-|.--.-+++|+.|.|.+|+|. .+-  .-+..+++|++|
T Consensus        43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            45667888887765   233667778888888888888544433334567888888888776 222  124567788888


Q ss_pred             EecCCCCCCCCCccc----ccCCCCEEeCCC
Q 048561          146 DIRFNFFTGSVPPQV----FMQTLDVLFLNN  172 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~----~l~~L~~L~L~~  172 (382)
                      .+-+|..+..--...    .+++|+.||...
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            888887763222111    167778777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=3.5e-05  Score=79.11  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=80.1

Q ss_pred             ccchhHHHhhhhHHHHHhhccccCC-CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcc-cCchh
Q 048561          201 SIPRSIGKLSSTLIEVLFLNNLLTG-CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG-QVPEV  278 (382)
Q Consensus       201 ~lp~~l~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~  278 (382)
                      ..+..++.+.++|+.|.+.+-.+.. .+-....++++|..||+|+..++. + ..++.+++|+.|.+.+=.+.. ..-..
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~  215 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLID  215 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHH
Confidence            3445566666777777777655432 233445678888889999888873 3 567788888888888766652 12235


Q ss_pred             hcCCCCCCEEEcccccCcccC-------CcccCCCCCCEEEccCCCCCC
Q 048561          279 LCALDNLVNLSLSNNYFTGVG-------PLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       279 ~~~l~~L~~L~L~~N~l~~~~-------~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +..+++|+.||+|........       ..-..+|+|+.||.+++.+..
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            667888999999887544322       123558899999999877765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00029  Score=59.95  Aligned_cols=103  Identities=21%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEE
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLS  289 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~  289 (382)
                      .....+|+++|.+..  ...|.+++.|..|.+.+|+|+...|.--..+++|+.|.|.+|.|.... -.-+..++.|++|.
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            355667777777652  234667777777788888777544443344567777777777776211 11244567777777


Q ss_pred             cccccCcccC----CcccCCCCCCEEEccC
Q 048561          290 LSNNYFTGVG----PLCRKLIKNGVLDVNR  315 (382)
Q Consensus       290 L~~N~l~~~~----~~~~~l~~L~~L~L~~  315 (382)
                      +-+|.++...    ..+..+++|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777776542    2466777777777554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=0.0001  Score=75.70  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=76.5

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCc-cCcccccCCCCCcE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG-TFPVAILGKNDLSF  144 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~  144 (382)
                      .+.+++|.+++-.+..+.....+.++++|+.||+++.+++..  ..+++|++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            346788888877776544555667888888888888888743  567888888888888766652 12235678888999


Q ss_pred             EEecCCCCCCCCCcc------c--ccCCCCEEeCCCCcCCCc
Q 048561          145 LDIRFNFFTGSVPPQ------V--FMQTLDVLFLNNNNFMQK  178 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~------~--~l~~L~~L~L~~n~l~~~  178 (382)
                      ||+|..... ..+..      .  .+|.|+.||.+++.+.+.
T Consensus       225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            999887655 22211      1  168888888888776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.00086  Score=59.31  Aligned_cols=99  Identities=27%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCc--cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchh---hcCCCCC
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNN--RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEV---LCALDNL  285 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L  285 (382)
                      ..|+.+.+.+..++..  ..+..+++|+.|.++.|  ++.+.++-....+++|+++++++|+|+ . +..   +..+.+|
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcch
Confidence            5567777776666521  24556778888888888  555444444445578888888888876 2 222   3445677


Q ss_pred             CEEEcccccCcccCC----cccCCCCCCEEEc
Q 048561          286 VNLSLSNNYFTGVGP----LCRKLIKNGVLDV  313 (382)
Q Consensus       286 ~~L~L~~N~l~~~~~----~~~~l~~L~~L~L  313 (382)
                      ..|++.+|..+....    .+.-+++|++||-
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            778888877665322    3555667776653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00064  Score=60.13  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC--CCCccCcccccCCCCCcEEEecCCCCCC--CCCcccccCC
Q 048561           89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN--KFSGTFPVAILGKNDLSFLDIRFNFFTG--SVPPQVFMQT  164 (382)
Q Consensus        89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~l~~  164 (382)
                      ..+..|+.|++.+..++. + ..+..|++|++|.++.|  ++.+.++.....+++|++|++++|++.-  .+.+.-.+.+
T Consensus        40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            344555555665655552 1 13455667777777777  4444444444455777777777777651  1111112455


Q ss_pred             CCEEeCCCCcC
Q 048561          165 LDVLFLNNNNF  175 (382)
Q Consensus       165 L~~L~L~~n~l  175 (382)
                      |..|++.+|..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            56666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.08  E-value=0.015  Score=46.31  Aligned_cols=83  Identities=12%  Similarity=0.090  Sum_probs=34.7

Q ss_pred             ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCC
Q 048561           87 FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQT  164 (382)
Q Consensus        87 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~  164 (382)
                      .|.+..+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...|.++++|+.+.+.. .+. .++...+  +.+
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            455555666666653 344344445566656666666553 4422233445555566666644 332 2333222  455


Q ss_pred             CCEEeCCCC
Q 048561          165 LDVLFLNNN  173 (382)
Q Consensus       165 L~~L~L~~n  173 (382)
                      |+.+.+..+
T Consensus        83 l~~i~~~~~   91 (129)
T PF13306_consen   83 LKNIDIPSN   91 (129)
T ss_dssp             ECEEEETTT
T ss_pred             ccccccCcc
Confidence            666665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.00063  Score=60.75  Aligned_cols=97  Identities=21%  Similarity=0.145  Sum_probs=74.3

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCch--hhcCCCCCCEE
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE--VLCALDNLVNL  288 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L  288 (382)
                      .+.+.|++.++.++++  .....++.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|. .+.+  .+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            4567788888887742  2356789999999999999843  34668899999999999887 3332  46688999999


Q ss_pred             EcccccCcccCC------cccCCCCCCEEE
Q 048561          289 SLSNNYFTGVGP------LCRKLIKNGVLD  312 (382)
Q Consensus       289 ~L~~N~l~~~~~------~~~~l~~L~~L~  312 (382)
                      .|..|.-.+...      .++.+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998776433      467888888886

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0053  Score=32.76  Aligned_cols=18  Identities=33%  Similarity=0.593  Sum_probs=8.0

Q ss_pred             CCEEEeecCCCCccCcccc
Q 048561          118 LYELDISNNKFSGTFPVAI  136 (382)
Q Consensus       118 L~~L~Ls~n~l~~~~p~~l  136 (382)
                      |++|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.36  E-value=0.0091  Score=29.63  Aligned_cols=16  Identities=31%  Similarity=0.465  Sum_probs=8.1

Q ss_pred             CCCEEEccCCCCCCCC
Q 048561          307 KNGVLDVNRNCIHYLP  322 (382)
Q Consensus       307 ~L~~L~L~~N~l~~lp  322 (382)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5667777777766655

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.96  E-value=0.00038  Score=68.53  Aligned_cols=182  Identities=24%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             CCCCEEEeecCCCCccC----cccccCCCCCcEEEecCCCCCCCCCcccc-----c-CCCCEEeCCCCcCCCcCCc----
Q 048561          116 PYLYELDISNNKFSGTF----PVAILGKNDLSFLDIRFNFFTGSVPPQVF-----M-QTLDVLFLNNNNFMQKLPQ----  181 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----l-~~L~~L~L~~n~l~~~~p~----  181 (382)
                      ..+..|.|.+|.+....    ...+...+.|+.|++++|.+.+.--..+.     . ..|+.|++..|.++...-.    
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            34778888888887432    23455678888889988888732211111     1 3456677777766543222    


Q ss_pred             CCCC-CcchhhhccCccccc----ccchhHHH---hhhhHHHHHhhccccCCC----CchhcccCcC-CCccccCCccCC
Q 048561          182 NLGS-TPALYLTFANNKFTG----SIPRSIGK---LSSTLIEVLFLNNLLTGC----LPYELGFLRE-ARVFDASNNRLT  248 (382)
Q Consensus       182 ~~~~-~~L~~L~l~~n~l~~----~lp~~l~~---l~~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~Ls~n~l~  248 (382)
                      .+.. ..++.++++.|.+..    .++..+..   -..++++|.+.+|.++..    ....+...+. +..|++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            2222 456667777666531    11222222   124566666666665521    1122333444 555666666665


Q ss_pred             CC----CCcCCCCC-CCCCEEeCcCCcCcccC----chhhcCCCCCCEEEcccccCcc
Q 048561          249 GP----LPCSLGCL-EKIERLNLSGNLLYGQV----PEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       249 ~~----~p~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                      +.    ....+..+ ..++.++++.|.|+..-    ...+..++.++++.+++|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            32    11122233 45566666666665322    2333444566666666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.93  E-value=0.065  Score=42.57  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=57.5

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.+.+.. .+.. +....|.+++.|+.+++.++ +......+|.++++|+.+.+.+ .+...-...|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            466777764 3443 45667889989999999885 6655566788898899999976 444233456677899999999


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      ..+ +. .++...+ -..|+.+.+..
T Consensus        89 ~~~-~~-~i~~~~f~~~~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN-IT-EIGSSSFSNCNLKEINIPS  112 (129)
T ss_dssp             TTT--B-EEHTTTTTT-T--EEE-TT
T ss_pred             Ccc-cc-EEchhhhcCCCceEEEECC
Confidence            765 54 4544443 23778887765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.79  E-value=0.013  Score=31.27  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=16.0

Q ss_pred             CCCEEEcCCCcCcccCCcccCCC
Q 048561           93 DLSLFHANSNKFSGTISPKLAQL  115 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l  115 (382)
                      +|++|++++|.++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788888888888 677766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=0.013  Score=52.63  Aligned_cols=97  Identities=19%  Similarity=0.108  Sum_probs=46.4

Q ss_pred             CCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccc--hhHHHhhhhHHHHHh
Q 048561          141 DLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP--RSIGKLSSTLIEVLF  218 (382)
Q Consensus       141 ~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp--~~l~~l~~~L~~L~l  218 (382)
                      +.+.|++.++.++ .|.--..|+.|++|.|+-|+|+..-| .-..++|++|+|..|.|.. +.  ..+.++ ++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknl-psLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNL-PSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcC-chhhhHhh
Confidence            3444555555544 22111114555555555555432211 1111455566666665542 21  123344 67777777


Q ss_pred             hccccCCCCch-----hcccCcCCCccc
Q 048561          219 LNNLLTGCLPY-----ELGFLREARVFD  241 (382)
Q Consensus       219 ~~n~l~~~~~~-----~~~~l~~L~~L~  241 (382)
                      ..|.-.+..+.     .+.-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            77766555432     234566666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.07  E-value=0.0012  Score=62.18  Aligned_cols=134  Identities=16%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             hhHHHHHhhccccC-CCCchh-cccCcCCCccccCCcc-CCCCCCcCC-CCCCCCCEEeCcCCcCcc--cCchhhcCCCC
Q 048561          211 STLIEVLFLNNLLT-GCLPYE-LGFLREARVFDASNNR-LTGPLPCSL-GCLEKIERLNLSGNLLYG--QVPEVLCALDN  284 (382)
Q Consensus       211 ~~L~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~  284 (382)
                      ..|+.++.+++... ...-.. ..+..+|+.|-+..++ ++..-...+ .+...|+.+++.......  .+...-..++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            45677777765432 111112 2456777777777665 221111111 145677777777665431  11122234577


Q ss_pred             CCEEEcccccCc-cc-----CCcccCCCCCCEEEccCCCCCCCCCcccccchhhhccCCCCCCCCCCcCccCCCCC
Q 048561          285 LVNLSLSNNYFT-GV-----GPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKV  354 (382)
Q Consensus       285 L~~L~L~~N~l~-~~-----~~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~np~~c~~~~~~~~~~c~~~  354 (382)
                      |+.+.|+++... ..     ...-..+..|..+.|++.....  +.        .+..-..|..+..+.++.|..+
T Consensus       374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~--------~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DA--------TLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HH--------HHHHHhhCcccceeeeechhhh
Confidence            888888877433 22     1112344566777776654332  11        1112235778888888888853

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.28  E-value=0.064  Score=26.54  Aligned_cols=12  Identities=42%  Similarity=0.415  Sum_probs=3.9

Q ss_pred             CcEEEecCCCCC
Q 048561          142 LSFLDIRFNFFT  153 (382)
Q Consensus       142 L~~L~Ls~n~l~  153 (382)
                      |+.|+|++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444433

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.10  E-value=0.0086  Score=59.17  Aligned_cols=108  Identities=17%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             CCCCCCEEEcCCCcCccc--CCcccCCCCCCCEEEeecC-CCCccCc----ccccCCCCCcEEEecCCC-CCCCCCcccc
Q 048561           90 QLPDLSLFHANSNKFSGT--ISPKLAQLPYLYELDISNN-KFSGTFP----VAILGKNDLSFLDIRFNF-FTGSVPPQVF  161 (382)
Q Consensus        90 ~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~  161 (382)
                      ..++|+.|.+.++.-...  +-.....+++|+.|+++++ ......+    .....+.+|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            456677776666532211  2233445677777777752 1111111    122345667777777766 3321111111


Q ss_pred             --cCCCCEEeCCCCc-CCCcCCcCCCC--CcchhhhccCcc
Q 048561          162 --MQTLDVLFLNNNN-FMQKLPQNLGS--TPALYLTFANNK  197 (382)
Q Consensus       162 --l~~L~~L~L~~n~-l~~~~p~~~~~--~~L~~L~l~~n~  197 (382)
                        +++|++|.+.++. ++...-..+..  ..|++|+++++.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence              4677777766554 23211111111  346666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.08  E-value=0.0013  Score=64.86  Aligned_cols=201  Identities=24%  Similarity=0.188  Sum_probs=122.6

Q ss_pred             CCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCccCc----ccccCC-CCCcEEEecCCCCCCCCCccc----
Q 048561           94 LSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGTFP----VAILGK-NDLSFLDIRFNFFTGSVPPQV----  160 (382)
Q Consensus        94 L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~Ls~n~l~~~~p~~~----  160 (382)
                      +..|.+.+|.+...    +...+.....|+.|++++|.+.+.--    ..+... ..+++|++..|.++..--..+    
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            77888888887643    33455677889999999998873211    223333 567788888888774432222    


Q ss_pred             c-cCCCCEEeCCCCcCCC----cCCcCCC----C-CcchhhhccCcccccccc----hhHHHhhhhHHHHHhhccccCCC
Q 048561          161 F-MQTLDVLFLNNNNFMQ----KLPQNLG----S-TPALYLTFANNKFTGSIP----RSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       161 ~-l~~L~~L~L~~n~l~~----~~p~~~~----~-~~L~~L~l~~n~l~~~lp----~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      . ...++.+++..|.+..    .++..+.    . ..+++|.++++.++...-    ..+......+..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            1 4678888888887731    1111222    2 567888998888762211    11222223377799998887643


Q ss_pred             ----CchhcccC-cCCCccccCCccCCCCCC----cCCCCCCCCCEEeCcCCcCcccCc----hhhcCCCCCCEEEcccc
Q 048561          227 ----LPYELGFL-REARVFDASNNRLTGPLP----CSLGCLEKIERLNLSGNLLYGQVP----EVLCALDNLVNLSLSNN  293 (382)
Q Consensus       227 ----~~~~~~~l-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N  293 (382)
                          +...+..+ ..++.++++.|.|++.-.    ..+.....++.+.+..|.+...-.    ........+..+.+.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence                22334445 677899999999875433    334456788999999998874321    12223344555555544


Q ss_pred             c
Q 048561          294 Y  294 (382)
Q Consensus       294 ~  294 (382)
                      .
T Consensus       329 ~  329 (478)
T KOG4308|consen  329 G  329 (478)
T ss_pred             C
Confidence            3

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.56  E-value=0.11  Score=28.77  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCCCCEEEccCCCCCCCCCc
Q 048561          305 LIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~  324 (382)
                      +++|+.|+|++|.|+.+|+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46789999999999999864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.56  E-value=0.11  Score=28.77  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCCCCEEEccCCCCCCCCCc
Q 048561          305 LIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~  324 (382)
                      +++|+.|+|++|.|+.+|+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            46789999999999999864

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.79  E-value=0.0032  Score=54.96  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=57.3

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..++.||++.|.+..  ....|+-++.|..|+++.|.+. ..|..++++..++.+++..|..+ ..|.+++..+++++++
T Consensus        42 kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            356777777777654  3344556667777777777766 56777777777777777777766 6777777777777777


Q ss_pred             ecCCCCC
Q 048561          147 IRFNFFT  153 (382)
Q Consensus       147 Ls~n~l~  153 (382)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            7777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.47  E-value=0.16  Score=28.00  Aligned_cols=18  Identities=39%  Similarity=0.617  Sum_probs=8.9

Q ss_pred             CCCcEEEecCCCCCCCCCc
Q 048561          140 NDLSFLDIRFNFFTGSVPP  158 (382)
Q Consensus       140 ~~L~~L~Ls~n~l~~~~p~  158 (382)
                      ++|++|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555555 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.47  E-value=0.16  Score=28.00  Aligned_cols=18  Identities=39%  Similarity=0.617  Sum_probs=8.9

Q ss_pred             CCCcEEEecCCCCCCCCCc
Q 048561          140 NDLSFLDIRFNFFTGSVPP  158 (382)
Q Consensus       140 ~~L~~L~Ls~n~l~~~~p~  158 (382)
                      ++|++|+|++|+++ .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34555555555555 4443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.92  E-value=0.15  Score=28.19  Aligned_cols=19  Identities=26%  Similarity=0.300  Sum_probs=16.4

Q ss_pred             CCCCEEEccCCCCCCCCCc
Q 048561          306 IKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~lp~~  324 (382)
                      ++|+.|++++|+|+++|+.
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             cccceeecCCCccccCccc
Confidence            4688999999999999974

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.53  E-value=0.004  Score=54.35  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             ccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cC
Q 048561           85 DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQ  163 (382)
Q Consensus        85 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~  163 (382)
                      -..+..+...+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.... .+
T Consensus        35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence            334667778888999988876 34456677788888999988887 77888888888888888888887 7777776 78


Q ss_pred             CCCEEeCCCCcCC
Q 048561          164 TLDVLFLNNNNFM  176 (382)
Q Consensus       164 ~L~~L~L~~n~l~  176 (382)
                      +++++++-.|.++
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            8888888888754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.09  E-value=0.013  Score=55.25  Aligned_cols=250  Identities=15%  Similarity=0.105  Sum_probs=127.3

Q ss_pred             ceeEEEcCCCCCCCCC-CccccCCCCCCCEEEcCCCcC-cccCCccc-CCCCCCCEEEeecC-CCCccCcc-cccCCCCC
Q 048561           68 ALASIDFNGFELAAPT-LDGFIDQLPDLSLFHANSNKF-SGTISPKL-AQLPYLYELDISNN-KFSGTFPV-AILGKNDL  142 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L  142 (382)
                      .++.|.+.+..-.+.. ...+-.+.++++.|.+.++.. +...-..+ ..++.|++|+|..+ .++...-. ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5677777776544422 222335678888888877742 21111112 24677888887773 34322111 22356778


Q ss_pred             cEEEecCCC-CCCC-CCc-ccccCC--------------------------CCEEeCCCCcCCCcCCc---CCCCCcchh
Q 048561          143 SFLDIRFNF-FTGS-VPP-QVFMQT--------------------------LDVLFLNNNNFMQKLPQ---NLGSTPALY  190 (382)
Q Consensus       143 ~~L~Ls~n~-l~~~-~p~-~~~l~~--------------------------L~~L~L~~n~l~~~~p~---~~~~~~L~~  190 (382)
                      ++|+++.+. +++. +.. .-+...                          +..+++.++........   .-+..+++.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            888877764 2210 000 001122                          22333333321111000   001135666


Q ss_pred             hhccCccc-ccccchhHHHhhhhHHHHHhhcccc-CCCCchhc-ccCcCCCccccCCccCC--CCCCcCCCCCCCCCEEe
Q 048561          191 LTFANNKF-TGSIPRSIGKLSSTLIEVLFLNNLL-TGCLPYEL-GFLREARVFDASNNRLT--GPLPCSLGCLEKIERLN  265 (382)
Q Consensus       191 L~l~~n~l-~~~lp~~l~~l~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~  265 (382)
                      ++.+++.- +...-..++.-..+|+.+.+..++. +..--..+ .+...|+.+++..+...  +.+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            66665542 2222233333345666666666652 21111122 35677888888777543  11222223567888888


Q ss_pred             CcCCcCcccC-----chhhcCCCCCCEEEcccccCcc--cCCcccCCCCCCEEEccCCC
Q 048561          266 LSGNLLYGQV-----PEVLCALDNLVNLSLSNNYFTG--VGPLCRKLIKNGVLDVNRNC  317 (382)
Q Consensus       266 L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~L~~N~  317 (382)
                      ++++.+....     ...-..+..|..+.|+++....  ....+..+++|+.+++.+.+
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            8887543111     2223456778888888886553  23356677788888777654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.00  E-value=0.97  Score=25.09  Aligned_cols=17  Identities=24%  Similarity=0.260  Sum_probs=12.7

Q ss_pred             CCCCEEEccCCCCCCCC
Q 048561          306 IKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~lp  322 (382)
                      .+|+.|++++|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            56788888888877654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.14  E-value=0.97  Score=44.51  Aligned_cols=64  Identities=22%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             ccCcCCCccccCCcc-CCCCCCcCCC-CCCCCCEEeCcCCc-CcccC-chhhcCCCCCCEEEcccccC
Q 048561          232 GFLREARVFDASNNR-LTGPLPCSLG-CLEKIERLNLSGNL-LYGQV-PEVLCALDNLVNLSLSNNYF  295 (382)
Q Consensus       232 ~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~~-p~~~~~l~~L~~L~L~~N~l  295 (382)
                      ..+.+|+.|+++++. ++...-..+. .+++|+.|.+.++. ++... -.....+++|++|+++++..
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            344566666666655 3322222222 24566666655444 33211 12223445566666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-15
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-08

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
           AL  +D +G +L+       I    +L L + +SN+F G I P    L  L  L ++ NK
Sbjct: 224 ALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 128 FSGTFPVAILGKND-LSFLDIRFNFFTGSVPP--------------------------QV 160
           F+G  P  + G  D L+ LD+  N F G+VPP                           +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 161 FMQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFTGSI-PRSIGKLSSTLIEVL 217
            M+ L VL L+ N F  +LP++L +  A  L L  ++N F+G I P       +TL E+ 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277
             NN  TG +P  L    E      S N L+G +P SLG L K+  L L  N+L G++P+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 278 VL 279
            L
Sbjct: 461 EL 462

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 68  ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
           AL  +D +G +L+       I    +L L + +SN+F G I P    L  L  L ++ NK
Sbjct: 221 ALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 128 FSGTFPVAILGKND-LSFLDIRFNFFTGSVPP--------------------------QV 160
           F+G  P  + G  D L+ LD+  N F G+VPP                           +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 161 FMQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFTGSI-PRSIGKLSSTLIEVL 217
            M+ L VL L+ N F  +LP++L +  A  L L  ++N F+G I P       +TL E+ 
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277
             NN  TG +P  L    E      S N L+G +P SLG L K+  L L  N+L G++P+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 278 VL 279
            L
Sbjct: 458 EL 459

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           I +L  L   +      SG I   L+Q+  L  LD S N  SGT P +I    +L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 148 RFNFFTGSVPPQV--FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS 205
             N  +G++P     F +    + ++ N    K+P    +    ++  + N   G     
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 206 IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
            G   +T    L  N+L       ++G  +     D  NNR+ G LP  L  L+ +  LN
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 266 LSGNLLYGQVPE 277
           +S N L G++P+
Sbjct: 275 VSFNNLCGEIPQ 286

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (409), Expect = 9e-47
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 10/274 (3%)

Query: 29  FKNTITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELA-APTLDGF 87
            K  + +      S+W+ +  C  + +       +     + ++D +G  L     +   
Sbjct: 14  IKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 88  IDQLPDL-SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
           +  LP L  L+    N   G I P +A+L  L+ L I++   SG  P  +     L  LD
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPAL--YLTFANNKFTGSIP 203
             +N  +G++PP +  +  L  +  + N     +P + GS   L   +T + N+ TG IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
            +   L+  L  V    N+L G      G  +  +    + N L   L   +G  + +  
Sbjct: 192 PTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
           L+L  N +YG +P+ L  L  L +L++S N   G
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (371), Expect = 3e-41
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           I +L  L   +      SG I   L+Q+  L  LD S N  SGT P +I    +L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 148 RFNFFTGSVPPQVF-MQTLD-VLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS 205
             N  +G++P        L   + ++ N    K+P    +    ++  + N   G     
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
            G   +   + + L  N L   L  ++G  +     D  NNR+ G LP  L  L+ +  L
Sbjct: 217 FGSDKN--TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL 301
           N+S N L G++P+    L      + +NN      PL
Sbjct: 274 NVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPL 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (410), Expect = 5e-44
 Identities = 73/222 (32%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQL-PYLYELDISNNKFSGTFPVAI--LGKNDLS 143
            + ++  L +   + N+FSG +   L  L   L  LD+S+N FSG     +    KN L 
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 144 FLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGS 201
            L ++ N FTG +PP +     L  L L+ N     +P +LGS   L  L    N   G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 202 IPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEK 260
           IP+ +  + +  +E L L  N LTG +P  L           SNNRLTG +P  +G LE 
Sbjct: 458 IPQELMYVKT--LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 261 IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
           +  L LS N   G +P  L    +L+ L L+ N F G  P  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (365), Expect = 4e-38
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 1/210 (0%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
             +L+    ++N+ +G I   + +L  L  L +SNN FSG  P  +     L +LD+  N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLS 210
            F G++P  +F Q+  +             +N G     +      +F G     + +LS
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL 270
           +        + +  G               D S N L+G +P  +G +  +  LNL  N 
Sbjct: 609 T-RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 271 LYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
           + G +P+ +  L  L  L LS+N   G  P
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (357), Expect = 5e-37
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 18/266 (6%)

Query: 57  CGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLP 116
           C +P + L  + L +  F G       +   +    +L   H + N  SGTI   L  L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 117 YLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNF 175
            L +L +  N   G  P  ++    L  L + FN  TG +P  +     L+ + L+NN  
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 176 MQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGF 233
             ++P+ +G    L  L  +NN F+G+IP  +G   S  +  L L  NL  G +P  +  
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS--LIWLDLNTNLFNGTIPAAMFK 560

Query: 234 LREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL--LYGQVPEVLCALDNLVNLSLS 291
                    + N + G     +      +  + +GNL    G   E L  L      +++
Sbjct: 561 QS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 292 NNYFTGVGPLCRKLIKN-GVLDVNRN 316
           +  + G          +   LD++ N
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (356), Expect = 8e-37
 Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 25/279 (8%)

Query: 29  FKNTITSDPFNITSTW-IGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGF 87
           FK+ +     N+   W    + C + G  C    D +T+I L+S   N    A  +    
Sbjct: 20  FKDVLPDK--NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSSKPLNVGFSAVSS---S 72

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI-LGK-NDLSFL 145
           +  L  L     +++  +G++         L  LD+S N  SG       LG  + L FL
Sbjct: 73  LLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL----YLTFANNKFT 199
           ++  N             + +L+VL L+ N+           +       +L  + NK +
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 200 GSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCL 258
           G +   + +  +  +E L + +N  +  +P  LG     +  D S N+L+G    ++   
Sbjct: 192 GDVD--VSRCVN--LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 259 EKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
            +++ LN+S N   G +P +     +L  LSL+ N FTG
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 2e-36
 Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 12/264 (4%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122
            L ++ +  +  N    A        D   +L     + NK SG +   +++   L  LD
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206

Query: 123 ISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQ 181
           +S+N FS   P  +   + L  LDI  N  +G     +     L +L +++N F+  +P 
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 182 -NLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240
             L S   L L  A NKFTG IP  +     TL  +    N   G +P   G        
Sbjct: 266 LPLKSLQYLSL--AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 241 DASNNRLTGPLPC-SLGCLEKIERLNLSGNLLYGQVPEVLCAL-DNLVNLSLSNNYFTGV 298
             S+N  +G LP  +L  +  ++ L+LS N   G++PE L  L  +L+ L LS+N F+G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 299 GP--LCRKLIKN-GVLDVNRNCIH 319
               LC+        L +  N   
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (345), Expect = 2e-35
 Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 13/236 (5%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQ---LPYLYELDISN 125
           L  ++ +   L  P       +L  L +   ++N  SG              L  L IS 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS 185
           NK SG   V+      L FLD+  N F+  +P       L  L ++ N       + + +
Sbjct: 188 NKISGDVDVSRCVN--LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 186 TPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYEL-GFLREARVFDA 242
              L  L  ++N+F G IP     L S  ++ L L  N  TG +P  L G        D 
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 243 SNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP-EVLCALDNLVNLSLSNNYFTG 297
           S N   G +P   G    +E L LS N   G++P + L  +  L  L LS N F+G
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (312), Expect = 5e-31
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 28/232 (12%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI------LGKN 140
           +I +L +L++   ++N FSG I  +L     L  LD++ N F+GT P A+      +  N
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

Query: 141 DLS----------------FLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNL 183
            ++                        F G    Q+  + T +   + +  +        
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 184 GSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFD 241
            +  ++ +L  + N  +G IP+ IG +    + +L L +N ++G +P E+G LR   + D
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPY--LFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 242 ASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
            S+N+L G +P ++  L  +  ++LS N L G +PE+    +        NN
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG-QFETFPPAKFLNN 737

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (274), Expect = 3e-26
 Identities = 48/269 (17%), Positives = 86/269 (31%), Gaps = 31/269 (11%)

Query: 83  TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF--------SGTFPV 134
           T D   D L DL+     +      +   L  LP +  ++++ N+               
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 135 AILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YL 191
                  +  + I +N             M+ L +L    N   +      GS   L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASL 358

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP--YELGFLREARVFDASNNRLTG 249
             A N+ T  IP +    +  +  + F +N L   +P  ++   +      D S N +  
Sbjct: 359 NLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 250 -------PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
                  PL  +      +  +NLS N +     E+      L +++L  N  T +    
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 303 RKLIKNG--------VLDVNRNCIHYLPD 323
            K              +D+  N +  L D
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (264), Expect = 6e-25
 Identities = 37/273 (13%), Positives = 83/273 (30%), Gaps = 21/273 (7%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122
              +          ++      D       DL     NS+    +I           ++ 
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 123 ISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQN 182
             +N  +     A++    L    +  + F          +  +          +     
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC----EAWENENSEYAQQYKTEDLK 244

Query: 183 LGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLT-------GCLPYELG 232
             +   L  +   N      +P  +  L    ++++ +  N  ++            +  
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPE--MQLINVACNRGISGEQLKDDWQALADAP 302

Query: 233 FLREARVFDASNNRL-TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS 291
              + ++     N L T P+  SL  ++K+  L    N L G++P    +   L +L+L+
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA 361

Query: 292 NNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPD 323
            N  T +    C    +   L    N + Y+P+
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 3e-23
 Identities = 23/211 (10%), Positives = 63/211 (29%), Gaps = 17/211 (8%)

Query: 100 NSNKFSGTISPKLAQLPYLYELDISNNKFSG----TFPVAILGKNDLSFLDIRFNFFTGS 155
                SG +   + QL  L  L + ++          P  I               +  +
Sbjct: 89  EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 156 VPPQVF---MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSS 211
                       L    +N++   + + ++   T     +   +N  T  + +++ +L+ 
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTK 207

Query: 212 TLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL 270
             +   ++ N+        E          ++   +           L+ +  + +    
Sbjct: 208 --LRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 271 LYGQVPEVLCALDNLVNLSLSNNYFTGVGPL 301
              ++P  L AL  +  ++++ N       L
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQL 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 9e-23
 Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 34/258 (13%)

Query: 86  GFIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSG-------TFPVAIL 137
            F      +       NK     +      +  +  +D S N+                 
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 138 GKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF-------MQKLPQNLGSTPA 188
              ++S +++  N  +   P ++F     L  + L  N         ++   +N  +T  
Sbjct: 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 189 L-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVF------ 240
           L  +    NK T  +       +   +  + L  N  +   P +       + F      
Sbjct: 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
           DA  NR     P  +     + +L +  N +  +V E +    N+  L + +N    +  
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 301 --LCRKLIKNGVLDVNRN 316
             +C   I+ G+  +  +
Sbjct: 605 SYVC-PYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISP-KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
                 L+      NK +      +   LPYL  +D+S N FS  FP   L  + L    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 147 IR------FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKF 198
           IR       N      P  +    +L  L + +N+  +K+ + +     +  L   +N  
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPN--ISVLDIKDNPN 599

Query: 199 TGSIPRSIGKLSSTLIEVLFLNNL--LTGCLPYELG 232
                  +       + +LF +    + GC   ++ 
Sbjct: 600 ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 9/116 (7%)

Query: 190 YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTG----CLPYELGFLREARVFDASN 244
            L+      +G +P +IG+L+   +EVL L ++          P  +             
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTE--LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 245 NRLTGPLPCSLGCLE--KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298
                         +   + +  ++ +     + +          +   +N  T V
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299
           F+   +        SL    ++  L+L G    G+VP+ +  L  L  L+L ++      
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 300 PL 301
            L
Sbjct: 122 RL 123

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (273), Expect = 4e-26
 Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 8/234 (3%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF 128
           L  + F   +      +  +  L  L L   N   F G  S        L  LD+S N  
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 129 SGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGST 186
             T     LG   L  LD + +         VF  ++ L  L +++ +            
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 187 PAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASN 244
            +L  L  A N F  +    I      L   L L    L    P     L   +V + S+
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 245 NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL-DNLVNLSLSNNYFTG 297
           N           CL  ++ L+ S N +     + L     +L  L+L+ N F  
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (257), Expect = 5e-24
 Identities = 48/270 (17%), Positives = 89/270 (32%), Gaps = 22/270 (8%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122
            L  + +        +     +    + L ++S F   S           +       L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLE 310

Query: 123 ISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNN--NFMQKLP 180
           + N KF     + +     L+F   +      +   +V + +L+ L L+ N  +F     
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGG----NAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 181 QNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYE-LGFLREA 237
           Q+   T +L YL  + N     +  +   L    +E L   ++ L     +     LR  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 238 RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLSLSNNYFT 296
              D S+             L  +E L ++GN       P++   L NL  L LS     
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 297 GVGPLCRKLIKNG----VLDVNRNCIHYLP 322
            + P       +     VL+++ N    L 
Sbjct: 484 QLSP---TAFNSLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 43/211 (20%), Positives = 68/211 (32%), Gaps = 14/211 (6%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
            N      S      P L  LD+S  +       A    + LS L +  N     +    
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGA 95

Query: 161 F--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTG-SIPRSIGKLSSTLIEV 216
           F  + +L  L     N        +G    L  L  A+N      +P     L++  +E 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN--LEH 153

Query: 217 LFL-NNLLTGCLPYELGFLREARVF----DASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
           L L +N +      +L  L +  +     D S N +    P +   + ++ +L L  N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 272 YGQVPEVLC-ALDNLVNLSLSNNYFTGVGPL 301
              V +     L  L    L    F   G L
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 41/269 (15%), Positives = 73/269 (27%), Gaps = 20/269 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           DG    L  LS      N          + L  L +L       +      I     L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-----YLTFANNK 197
           L++  N       P+ F  +  L+ L L++N        +L     +      L  + N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE-------LGFLREARVFDASNNRLTGP 250
                P +  ++   L ++   NN  +  +          L   R       +   L   
Sbjct: 189 MNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 251 LPCSLGCLEKIERLNLSGNLL---YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK 307
              +L  L  +         L      + ++   L N+ + SL +     V         
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFG 305

Query: 308 NGVLDVNRNCIHYLPDQRSTHECALFFLQ 336
              L++        P  +      L F  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 13/191 (6%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
                LD+S N        +     +L  LD+        +    +  +  L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 174 NFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYE 230
                         +L  L              IG L +  ++ L +  N + +  LP  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLPEY 144

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIE----RLNLSGNLLYGQVPEVLCALDNLV 286
              L      D S+N++       L  L ++      L+LS N +    P     +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 287 NLSLSNNYFTG 297
            L+L NN+ + 
Sbjct: 204 KLTLRNNFDSL 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 7/176 (3%)

Query: 86  GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGK-NDLSF 144
                L +L     +        +     L  L  L ++ N F   F   I  +  +L+F
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGS 201
           LD+        + P  F  + +L VL +++NNF            +L  L ++ N    S
Sbjct: 475 LDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 202 IPRSIGKLSSTLIEVLFLNNLLTGCLPYE--LGFLREARVFDASNNRLTGPLPCSL 255
             + +    S+L  +    N       ++  L ++++ R       R+    P   
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 48/279 (17%), Positives = 82/279 (29%), Gaps = 43/279 (15%)

Query: 84  LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL----YELDISNNKFSGTFPVAILGK 139
           L  +   L +L     +SNK        L  L  +      LD+S N  +   P A    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 140 NDLSFLDIRFNFFTGSVPPQVF--MQTLDVL------FLNNNNFMQKLPQNLGSTPALYL 191
             L  L +R NF + +V       +  L+V       F N  N  +     L     L +
Sbjct: 201 R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 192 TF----ANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNR 246
                   + +   I      L++  +    L +  +         +    +  +  N +
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 247 LTGPLPCSLGC-------------------LEKIERLNLSGNLLY--GQVPEVLCALDNL 285
                   L                     L  +E L+LS N L   G   +      +L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 286 VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ 324
             L LS N    +      L +   LD   + +  + + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 7/161 (4%)

Query: 167 VLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTG 225
                  NF  K+P NL  +    L  + N        S        ++VL L    +  
Sbjct: 11  TYQCMELNF-YKIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQT 66

Query: 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL 285
                   L        + N +      +   L  +++L      L       +  L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 286 VNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYLPDQ 324
             L++++N             L     LD++ N I  +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (255), Expect = 1e-23
 Identities = 60/260 (23%), Positives = 94/260 (36%), Gaps = 23/260 (8%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI----LGKN 140
           D     L  L   +   N   G  S     L  L  L +SN+  S           L  +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 141 DLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANN 196
            L  L++  N  +  +    F  +  L+VL L  N   Q+L          +  +  + N
Sbjct: 382 PLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 197 KFTGSIPRSIGKLSSTLIEVLFL-NNLLTGC--LPYELGFLREARVFDASNNRLTGPLPC 253
           K+      S   + S  ++ L L    L      P     LR   + D SNN +      
Sbjct: 441 KYLQLTRNSFALVPS--LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 254 SLGCLEKIERLNLSGNLL--------YGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRK 304
            L  LEK+E L+L  N L         G     L  L +L  L+L +N F  +   + + 
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 305 LIKNGVLDVNRNCIHYLPDQ 324
           L +  ++D+  N ++ LP  
Sbjct: 559 LFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 2e-23
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 19/254 (7%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFID-QLPDLSLFHANSNKFSGTISPKLAQLPYLYEL 121
            L  +   S+  +   L   T + F+      L + +   NK S   S   + L +L  L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 122 DISNNKFSGTFPVAILGK-NDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF--M 176
           D+  N+              ++  + + +N +   +    F  + +L  L L       +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNV 469

Query: 177 QKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNL-------LTGC 226
              P        L  L  +NN         +  L    +E+L L  NNL         G 
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK--LEILDLQHNNLARLWKHANPGG 527

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286
             Y L  L    + +  +N            L +++ ++L  N L      V     +L 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 287 NLSLSNNYFTGVGP 300
           +L+L  N  T V  
Sbjct: 588 SLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 19/238 (7%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
            N+     +    +   L  LD+  N  S   P        L  L+++ N  +  +  + 
Sbjct: 34  HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKT 92

Query: 161 F--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVL 217
           F     L  L L +N+  +           L  L  ++N  + +   +  +L +  ++ L
Sbjct: 93  FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN--LQEL 150

Query: 218 FL-NNLLTGCLPYELGFL--REARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ 274
            L NN +      EL        +  + S+N++    P     + ++  L L+   L   
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 275 VPEVLCALDN---LVNLSLSNNYFTGV-----GPLCRKLIKNGVLDVNRNCIHYLPDQ 324
           + E LC       + NLSLSN+  +         L    +   +LD++ N ++ + + 
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT--MLDLSYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 51/259 (19%), Positives = 88/259 (33%), Gaps = 20/259 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           D       +L+  H  SN      +    +   L  LD+S+N  S T     +   +L  
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE 149

Query: 145 LDIRFNFFTGSVPPQVF----MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFT 199
           L +  N     +  +        +L  L L++N   +  P    +   L  L   N +  
Sbjct: 150 LLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 200 GSIPRSIG-KLSSTLIEVLFL-NNLLTGCLPYELGFLREA--RVFDASNNRLTGPLPCSL 255
            S+   +  +L++T I  L L N+ L+         L+     + D S N L      S 
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 256 GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR-KLIKNG----- 309
             L ++E   L  N +       L  L N+  L+L  ++      L     I +      
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 310 ----VLDVNRNCIHYLPDQ 324
                L++  N I  +   
Sbjct: 329 KCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 15/247 (6%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
                +LP L + +   N+ S       A    L EL + +N          + + +L  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFM---QKLPQNLGSTPALYLTFANNKFT 199
           LD+  N  + S        ++ L  L L+NN       +      ++    L  ++N+  
Sbjct: 126 LDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 200 GSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGF---LREARVFDASNNRLTGPLPCSL 255
              P     +    +  LFL N  L   L  +L         R    SN++L+     + 
Sbjct: 185 EFSPGCFHAIGR--LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 256 GCLE--KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGVLD 312
             L+   +  L+LS N L     +    L  L    L  N    +       L     L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 313 VNRNCIH 319
           + R+   
Sbjct: 303 LKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 52/264 (19%), Positives = 90/264 (34%), Gaps = 26/264 (9%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLA--QLPYLYELDISNNKFSGTFPVAILGKNDL 142
            G   QL +L     ++NK     S +L       L +L++S+N+     P        L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 143 SFLDIRFNFFTGSVPPQVFMQT----LDVLFLNNNNFMQKLP---QNLGSTPALYLTFAN 195
             L +       S+  ++ ++     +  L L+N+            L  T    L  + 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 196 NKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNN--------- 245
           N        S   L    +E  FL  N +     + L  L   R  +   +         
Sbjct: 258 NNLNVVGNDSFAWLPQ--LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 246 RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP---LC 302
            L      S   L+ +E LN+  N + G    +   L NL  LSLSN++ +         
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 303 RKLIKNG--VLDVNRNCIHYLPDQ 324
             L  +   +L++ +N I  +   
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 48/255 (18%), Positives = 79/255 (30%), Gaps = 19/255 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
                 L  L +     N+    ++ +    L  ++E+ +S NK+      +      L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 144 FLDIRFNFFTG-SVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFT 199
            L +R          P  F  ++ L +L L+NNN        L     L  L   +N   
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 200 --------GSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGP 250
                   G     +  LS   + +L L +N            L E ++ D   N L   
Sbjct: 518 RLWKHANPGGPIYFLKGLSH--LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLC-ALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
                     ++ LNL  NL+     +V   A  NL  L +  N F          +   
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN-- 633

Query: 310 VLDVNRNCIHYLPDQ 324
            ++     I  L   
Sbjct: 634 WINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 13/219 (5%)

Query: 115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN 172
              +  L++++N+            + L+ LD+ FN  +  + P++   +  L VL L +
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 173 NNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYE 230
           N   Q   +       L  L   +N           K  +  +  L L +N L+      
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN--LITLDLSHNGLSSTKLGT 140

Query: 231 LGFLREARVFDASNNRLTG--PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL 288
              L   +    SNN++         +     +++L LS N +    P    A+  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 289 SLSNNYFTGVGPLCRKLIKNG----VLDVNRNCIHYLPD 323
            L+N            L         L ++ + +    +
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 38/187 (20%), Positives = 57/187 (30%), Gaps = 9/187 (4%)

Query: 142 LSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTG 200
               D      T  VP  +    + VL L +N   +    N      L  L    N  + 
Sbjct: 6   HEVADCSHLKLT-QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 201 SIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLE 259
             P    KL    ++VL L +N L+        F          +N +           +
Sbjct: 64  LEPELCQKLPM--LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP---LCRKLIKNGVLDVNRN 316
            +  L+LS N L          L+NL  L LSNN    +               L+++ N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 317 CIHYLPD 323
            I     
Sbjct: 182 QIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 12/185 (6%)

Query: 82  PTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND 141
            +       L +L++   ++N  +      L  L  L  LD+ +N  +  +  A  G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 142 LSF--------LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-Y 190
                      L++  N F   +P +VF  +  L ++ L  NN          +  +L  
Sbjct: 530 YFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP 250
           L    N  T    +  G     L E+    N           F+        +   L+  
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

Query: 251 LPCSL 255
             C+ 
Sbjct: 649 YLCNT 653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (251), Expect = 3e-23
 Identities = 43/264 (16%), Positives = 75/264 (28%), Gaps = 31/264 (11%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG---------TFPVAILG 138
              L DL+     +      +   L  LP L  L+I+ N+                    
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 139 KNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFAN 195
              +    + +N             M  L +L   +N   + L    G+   L  L    
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVKLTDLKLDY 604

Query: 196 NKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP--YELGFLREARVFDASNNRLTG---- 249
           N+    IP      +  +  + F +N L   +P  +    +      D S N++      
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 250 -PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN 308
                          + LS N +     E+      +  + LSNN  T +     K    
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 309 G--------VLDVNRNCIHYLPDQ 324
                     +D+  N +  L D 
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 1e-22
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 27/242 (11%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
                G +   + QL  L  L    +  + +  +    +      + R +          
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 161 F-----MQTLDVL---FLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSST 212
                 +   D+L      N         +  S     +    N+ T  I ++I +L+  
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTK- 449

Query: 213 LIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
            +++++  N+  T      + +       ++   +       S   L+ +  + L     
Sbjct: 450 -LQIIYFANSPFTY-DNIAVDWE----DANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG----------VLDVNRNCIHYL 321
             Q+P+ L  L  L +L+++ N       L     +            +  +  N +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 322 PD 323
           P 
Sbjct: 564 PA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 3e-22
 Identities = 47/270 (17%), Positives = 79/270 (29%), Gaps = 32/270 (11%)

Query: 83  TLDGFIDQLPDLSLFHANSNKFSG---------TISPKLAQLPYLYELDISNNKFSGTFP 133
            L  F+  LP+L   +   N+             ++      P +    +  N       
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 134 VAILGK-NDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPAL-Y 190
            A L K   L  LD   N     +        L  L L+ N   +++P++  + T  +  
Sbjct: 566 SASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEG 623

Query: 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREA------RVFDAS 243
           L F++NK    IP      S  ++  +    N +       +    +            S
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLS 681

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLL-------YGQVPEVLCALDNLVNLSLSNNYFT 296
            N +             I  + LS NL+                    L  + L  N  T
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 297 GVGP--LCRKLIKNGVLDVNRNCIHYLPDQ 324
            +        L     +DV+ NC    P Q
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 4e-21
 Identities = 41/253 (16%), Positives = 82/253 (32%), Gaps = 34/253 (13%)

Query: 91  LPDLSLFHANSNKFSG-TISPKLAQLPYLYELDISNNKFSGTFPVAILGKND------LS 143
              +     + NK            +  +  +D S NK        I    D       S
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINAS 676

Query: 144 FLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF-------MQKLPQNLGSTPAL-YLTF 193
            + + +N      P ++F     +  + L+NN         ++    N  +T  L  +  
Sbjct: 677 TVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 194 ANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVF------DASNNR 246
             NK T S+       +   +  + +  N  +   P +     + + F      DA  NR
Sbjct: 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV--GPLCRK 304
           +    P  +     + +L +  N +  +V E L     L  L +++N    +    +C  
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850

Query: 305 LIKNG-VLDVNRN 316
           +     VL  ++ 
Sbjct: 851 IEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 38/241 (15%)

Query: 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNN---- 174
             +   + +     V +     ++ L +      G VP  +  +  L VL    ++    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 175 ----FMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE 230
                 ++L  ++       +     K      + +      L++     N     +  +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD--LLQDAINRNPEMKPIKKD 420

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL------------------- 271
                +        NR+T  +  ++  L K++ +  + +                     
Sbjct: 421 SRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPL----CRKLIKNGVLDVNRNCIHYLPDQRST 327
           Y         L +L ++ L N       P       +L     L++  N        ++ 
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ---SLNIACNRGISAAQLKAD 536

Query: 328 H 328
            
Sbjct: 537 W 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 18/154 (11%), Positives = 48/154 (31%), Gaps = 9/154 (5%)

Query: 190 YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLT 248
            L+ A     G +P +IG+L+   ++VL    +  T              + +   +R+ 
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTE--LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 249 GPLP-CSLGCLEKIERLNLSGNLL-----YGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
                  L   +++   +L  + +        + +          +    N  T +    
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 303 RKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQ 336
           ++L K  ++    +   Y        +    + +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 11/156 (7%)

Query: 172 NNNFMQKLPQNLGSTPALYLTFANNKFTG--SIPRSIGKLSSTLIEVLFLNNL---LTGC 226
           + + +++      S      T  +NK T   ++P  + + +  + +   L  +   L G 
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGK 284

Query: 227 LPYELGFLREARV------FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280
                       +      F+   +         L    ++  L+L+G    G+VP+ + 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 281 ALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRN 316
            L  L  LS   +  T  G L         +   R 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.1 bits (224), Expect = 7e-20
 Identities = 48/296 (16%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 59  HPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL 118
              + L  +++ SI+         + + F      L      +   S  +   L  L  L
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

Query: 119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNN-- 174
            +L +S NKF     ++      L+ L I+ N     +       ++ L  L L++++  
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 175 FMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSS---------------------- 211
                   L +   L  L  + N+       +  +                         
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 212 -TLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC---LEKIERLNL 266
             L++VL L ++LL          L   +  +   N               L ++E L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
           S   L         +L  + ++ LS+N  T         +K   L++  N I  + 
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 16/244 (6%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNK--FSGTFPVAILGKND 141
                  P L+      N     +    L  L  L ELD+S++    S    + +   + 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 142 LSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNK 197
           L  L++ +N    S+  + F     L++L L       K  Q+   +   L  L  +++ 
Sbjct: 378 LQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 198 FTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREA---RVFDASNNRLTGPLPC 253
              S  +    L +  ++ L L  N        +   L+      +   S   L+     
Sbjct: 437 LDISSEQLFDGLPA--LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLD 312
           +   L+ +  ++LS N L     E L  L  +  L+L++N+ + + P L   L +   ++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTIN 553

Query: 313 VNRN 316
           + +N
Sbjct: 554 LRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 53/236 (22%), Positives = 87/236 (36%), Gaps = 8/236 (3%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNK--FSGTISPKLAQLPYLYELDISNN 126
           L  +   G         G ++ L +L     + +    S   + +L  L +L  L++S N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLG 184
           +       A      L  LD+ F           F  +  L VL L+++       Q   
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 185 STPAL-YLTFANNKFTGSIPRSIGKLSS-TLIEVLFL-NNLLTGCLPYELGFLREARVFD 241
             PAL +L    N F     +    L +   +E+L L    L+    +    L+     D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 242 ASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
            S+NRLT     +L  L+ I  LNL+ N +   +P +L  L     ++L  N    
Sbjct: 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 35/248 (14%), Positives = 63/248 (25%), Gaps = 12/248 (4%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           +        L      +N         L+    L  L       S    + +  +  L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 145 LDIRFNFFTGSVPPQVFMQT--LDVLFLNNNNFMQ---KLPQNLGSTPALYLTFANNKFT 199
           L +  N  + S+       T  L VL   NN       +   +L     L L    N   
Sbjct: 134 LYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 200 GSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGF--LREARVFDASNNRLTGPLPCSLG- 256
             I       +     + F        +   L    ++   +    +       P     
Sbjct: 193 -GIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 257 -CLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR 315
            C   +E +NL  +  +            L  L L+  + + +      L     L ++ 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 316 NCIHYLPD 323
           N    L  
Sbjct: 311 NKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 36/242 (14%), Positives = 68/242 (28%), Gaps = 9/242 (3%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
           +L +L+       +              L  L ++ N        A+ G   L  L    
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 150 NFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
              + S+        +TL+ L+L +N+           T  L  L F NN         +
Sbjct: 115 TGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLG--CLEKIERL 264
             L       L LN      +          +  +    +    +   L    ++ +   
Sbjct: 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233

Query: 265 NLSGNLLYGQVPEVLCALD--NLVNLSLSNNYFTGVGPLC-RKLIKNGVLDVNRNCIHYL 321
                      P V   L   ++ +++L  +YF  +             LD+    +  L
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 322 PD 323
           P 
Sbjct: 294 PS 295

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 34/219 (15%), Positives = 65/219 (29%), Gaps = 31/219 (14%)

Query: 115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN 172
                 L+ S N              +L+FLD+        +    F     LD L L  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 173 NNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYEL 231
           N  +      L    AL +L F     +      +    +  +E L+L            
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT--LESLYL------------ 136

Query: 232 GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL--VNLS 289
                       +N ++          EK++ L+   N ++    E + +L     ++L+
Sbjct: 137 -----------GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 290 LSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTH 328
           L+ N   G+ P          L+        +  +   +
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 24/185 (12%), Positives = 49/185 (26%), Gaps = 11/185 (5%)

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
            +         +P  +   + + L  + N               L +L     +      
Sbjct: 17  YNCENLGLN-EIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
            +        ++ L L  N L       L   +  +        ++      L   + +E
Sbjct: 75  DTFQSQHR--LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL----CRKLIKNGVLDVNRNCI 318
            L L  N +           + L  L   NN    +        ++   N  L++N N I
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNLSLNLNGNDI 191

Query: 319 HYLPD 323
             +  
Sbjct: 192 AGIEP 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS- 143
                 L  L + + + +    +       LP L  L++  N F             L  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 144 --FLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFT 199
              L + F   + S+    F  ++ ++ + L++N       + L     +YL  A+N  +
Sbjct: 478 LEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536

Query: 200 GSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLR 235
             +P  +  LS     +    N L  C    + FL 
Sbjct: 537 IILPSLLPILSQ-QRTINLRQNPLD-CTCSNIYFLE 570

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 7/132 (5%)

Query: 195 NNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPC 253
           N      IP ++        E L    N+L          L      D +  ++      
Sbjct: 21  NLGLN-EIPGTL----PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGVLD 312
           +     +++ L L+ N L       L     L +L       + +  +          L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 313 VNRNCIHYLPDQ 324
           +  N I  +   
Sbjct: 136 LGSNHISSIKLP 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 52/234 (22%), Positives = 80/234 (34%), Gaps = 11/234 (4%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA--ILGKNDLSFLDI 147
            LP L       NK  G+IS K   LP L  LD+S N  S +   +   LG N L  LD+
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRS 205
            FN         + ++ L  L   ++   +    +   S   L YL  +           
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 206 IGKLSSTLIEVLFL--NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
              L+S  +  L +  N+     L             D S  +L          L +++ 
Sbjct: 444 FLGLTS--LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN-GVLDVNRN 316
           LN+S N L          L +L  L  S N       + +   K+    ++  N
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 46/261 (17%), Positives = 79/261 (30%), Gaps = 17/261 (6%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF 128
           ++++   G  +          +   LS+      +F          LP+L  L ++ NK 
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT------LDLPFLKSLTLTMNKG 340

Query: 129 SGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF----MQTLDVLFLNNNNFMQKLPQNLG 184
           S +F    L    LS+LD+  N  +       +      +L  L L+ N     +  N  
Sbjct: 341 SISFKKVALPS--LSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFM 396

Query: 185 STPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243
               L +L F ++        S       L+ +                 L        +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 244 NNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
            N      L         +  L+LS   L      V   L  L  L++S+N    +    
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 303 -RKLIKNGVLDVNRNCIHYLP 322
             +L     LD + N I    
Sbjct: 517 YNQLYSLSTLDCSFNRIETSK 537

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 41/253 (16%), Positives = 65/253 (25%), Gaps = 17/253 (6%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           D     L  LS      N          + L  L  L     K +      I     L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-----YLTFANNK 197
           L++  NF      P  F  +  L  + L+ N        +L            L  + N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFD------ASNNRLTGPL 251
               I     +        L  N   +  +   L  L    V             L    
Sbjct: 193 ID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 252 PCSLGCLEKI--ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
           P  +  L  +  +   L+    +         L N+  +SL+      +  +  K  K  
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVP-KHFKWQ 310

Query: 310 VLDVNRNCIHYLP 322
            L + R  +   P
Sbjct: 311 SLSIIRCQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 44/211 (20%), Positives = 66/211 (31%), Gaps = 14/211 (6%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
            N      S   +    L  LD+S  +       A  G + LS L +  N    S  P  
Sbjct: 41  FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGS 99

Query: 161 F--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTG-SIPRSIGKLSSTLIEV 216
           F  + +L+ L              +G    L  L  A+N      +P     L++  +  
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN--LVH 157

Query: 217 LFL-NNLLTGCLPYELGFLREARVF----DASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
           + L  N +      +L FLRE        D S N +   +        K+  L L GN  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFN 216

Query: 272 YGQVPEVLC-ALDNLVNLSLSNNYFTGVGPL 301
              + +     L  L    L    F     L
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 36/250 (14%), Positives = 66/250 (26%), Gaps = 19/250 (7%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
             +L     +  +           L +L  L ++ N      P +  G   L  L     
Sbjct: 55  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114

Query: 151 FFTGSVPPQVF--MQTLDVLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
               S+       + TL  L + +N     KLP    +   L ++  + N         +
Sbjct: 115 KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 207 GKLSSTLIEVLFLN---NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
             L       L L+   N +          ++   +    N   +  +   L  L  +  
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 264 LNLSGNLLYG---------QVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGVLDV 313
             L                 + E LC +       L+         +    L     + +
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 314 NRNCIHYLPD 323
               I YL D
Sbjct: 293 AGVSIKYLED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 34/211 (16%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
                +D+S N        +    ++L +LD+       ++  + +  +  L  L L  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 174 NFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELG 232
                 P +     +L  L     K        IG+L +  ++ L +             
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT--LKKLNV------------- 135

Query: 233 FLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL----VN 287
                     ++N +    LP     L  +  ++LS N +       L  L       ++
Sbjct: 136 ----------AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 288 LSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
           L +S N    +     + IK   L +  N  
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 7/174 (4%)

Query: 154 GSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTL 213
           GS+ P + +         +     K+P ++ S+    +  + N        S    S   
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKL-SKVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFSE-- 57

Query: 214 IEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLY 272
           ++ L L    +          L        + N +    P S   L  +E L      L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 273 GQVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYLPDQ 324
                 +  L  L  L++++N+            L     +D++ N I  +   
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 7/171 (4%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF 128
           L  +DF    L   T       L  L     +              L  L  L ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 129 SGTFPVAILGKND-LSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS 185
                  +      L+FLD+        +   VF  +  L +L +++NN +     +   
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 186 TPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLR 235
             +L  L  + N+   +    +     +L      NN +  C+     FL+
Sbjct: 520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQ 568

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-19
 Identities = 54/279 (19%), Positives = 89/279 (31%), Gaps = 31/279 (11%)

Query: 84  LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
                D+    +L   N N+       K   +    EL ++    S + P  +     ++
Sbjct: 29  YFSAWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQIT 83

Query: 144 FLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP 203
            L+I  N    S+P      +L+ L   +N     LP+   S   L +   NN+ T  +P
Sbjct: 84  VLEITQNALI-SLPEL--PASLEYLDACDNRL-STLPELPASLKHLDVD--NNQLT-MLP 136

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
                L     E +   NN LT  LP     L         NN+LT  LP     LE   
Sbjct: 137 ELPALL-----EYINADNNQLT-MLPELPTSLEV---LSVRNNQLTF-LPELPESLEA-- 184

Query: 263 RLNLSGNLLYGQVPEVLCALDNL----VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
            L++S NLL   +P V     +     +      N  T +      L     + +  N +
Sbjct: 185 -LDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 319 HYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPW 357
                +  + + A         ++               
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 9e-16
 Identities = 54/250 (21%), Positives = 83/250 (33%), Gaps = 32/250 (12%)

Query: 88  IDQLPD-----LSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDL 142
           +  LPD     +++     N    ++    A L YL   D  +N+ S T P        L
Sbjct: 71  LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TLPELPAS---L 122

Query: 143 SFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSI 202
             LD+  N  T  +P       L+ +  +NN     LP+   S   L +   NN+ T  +
Sbjct: 123 KHLDVDNNQLT-MLPEL--PALLEYINADNNQL-TMLPELPTSLEVLSVR--NNQLT-FL 175

Query: 203 PRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFL----REARVFDASNNRLTGPLPCSLGC 257
           P     L     E L +  NLL   LP               F    NR+T  +P ++  
Sbjct: 176 PELPESL-----EALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILS 228

Query: 258 LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNC 317
           L+    + L  N L  ++ E L       +      YF+        L +     V    
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

Query: 318 IHYLPDQRST 327
                   S 
Sbjct: 289 PENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL--CALDNLVNLSLSNNYFTGV 298
           ++  N ++G         +K E+  L G     +   +L  C ++    L L+    + +
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 299 GP-LCRKLIKNGVLDVNRNCIHYLPDQ 324
              L  ++    VL++ +N +  LP+ 
Sbjct: 75  PDNLPPQIT---VLEITQNALISLPEL 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
            +  L  +   +  +N     +SP L+ +  L  L ++ +K     P+A L    L  L 
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTD--LYSLS 183

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRS 205
           + +N     + P   + +L       N     +   + +   L  L   NNK T   P  
Sbjct: 184 LNYNQIE-DISPLASLTSLHYFTAYVNQI-TDIT-PVANMTRLNSLKIGNNKITDLSP-- 238

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           +  LS   +  L +  N ++      +  L + ++ +  +N+++      L  L ++  L
Sbjct: 239 LANLSQ--LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSL 292

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
            L+ N L  +  EV+  L NL  L LS N+ T + PL   L K    D     I
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA-SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 48/239 (20%), Positives = 91/239 (38%), Gaps = 23/239 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +  L  L+  +  +NK +  IS  L  L  L EL ++ +  S   P+A L K  +  L++
Sbjct: 84  LSNLVKLTNLYIGTNKIT-DISA-LQNLTNLRELYLNEDNISDISPLANLTK--MYSLNL 139

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N     + P   M  L+ L +  +   + +   + +   L  L+   N+     P  +
Sbjct: 140 GANHNLSDLSPLSNMTGLNYLTVTESKV-KDVT-PIANLTDLYSLSLNYNQIEDISP--L 195

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             L+S  +       N +T   P  +  +         NN++T   P  L  L ++  L 
Sbjct: 196 ASLTS--LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL--CRKLIKNGVLDVNRNCIHYLP 322
           +  N +       +  L  L  L++ +N  + +  L    +L     L +N N +    
Sbjct: 250 IGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS---LFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 9e-15
 Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 19/237 (8%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
            ++L  ++       K + +I   +  L  L  L+++ N+ +   P++ L K  L+ L I
Sbjct: 40  QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYI 95

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  T  +     +  L  L+LN +N +  +   L +   +  L    N     +   +
Sbjct: 96  GTNKIT-DISALQNLTNLRELYLNEDN-ISDIS-PLANLTKMYSLNLGANHNLSDLS-PL 151

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             ++   +  L +  + +    P  +  L +      + N++    P  L  L  +    
Sbjct: 152 SNMTG--LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
              N +       +  +  L +L + NN  T + PL   L +   L++  N I  + 
Sbjct: 206 AYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLA-NLSQLTWLEIGTNQISDIN 259

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 17/214 (7%)

Query: 111 KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFL 170
             A L       +     +       L    ++ L +       S+    ++  L+ L L
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKVA-SIQGIEYLTNLEYLNL 73

Query: 171 NNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLP 228
           N N         L +   L  L    NK T     ++  L++  +  L+L  + ++   P
Sbjct: 74  NGNQI--TDISPLSNLVKLTNLYIGTNKIT--DISALQNLTN--LRELYLNEDNISDISP 127

Query: 229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL 288
             L  L +    +   N     L   L  +  +  L ++ + +  +    +  L +L +L
Sbjct: 128 --LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSL 182

Query: 289 SLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
           SL+ N    + PL   L          N I  + 
Sbjct: 183 SLNYNQIEDISPLA-SLTSLHYFTAYVNQITDIT 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 163 QTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NN 221
            TL  L    N     +  +      +         T  +     +L S  I  L +   
Sbjct: 3   ATLATLPAPINQ----IFPDADLAEGIRAVLQKASVTDVVT--QEELES--ITKLVVAGE 54

Query: 222 LLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCA 281
            +   +   + +L      + + N++T   P  L  L K+  L +  N +       L  
Sbjct: 55  KVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           L NL  L L+ +  + + PL   L K   L++  N       
Sbjct: 109 LTNLRELYLNEDNISDISPLA-NLTKMYSLNLGANHNLSDLS 149

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 8e-19
 Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 22/220 (10%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
             +L  L     ++      +   + Q   L  L ++ N      P +I   N L  L I
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157

Query: 148 RFNFFTGSVPPQV----------FMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANN 196
           R       +P  +           +  L  L L      + LP ++ +   L  L   N+
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNS 216

Query: 197 KFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYELGFLREARVFDASN-NRLTGPLPC 253
             + ++  +I  L    +E L L     L    P   G     +     + + L   LP 
Sbjct: 217 PLS-ALGPAIHHLPK--LEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLT-LPL 271

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
            +  L ++E+L+L G +   ++P ++  L     + +  +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 19/208 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND------ 141
           + Q   L       N     +   +A L  L EL I         P  +   +       
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 142 ---LSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANN 196
              L  L + +     S+P  +  +Q L  L + N+     L   +   P L  L     
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGC 239

Query: 197 KFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS 254
               + P   G  +   ++ L L   + L   LP ++  L +    D         LP  
Sbjct: 240 TALRNYPPIFGGRAP--LKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 255 LGCLEKIERLNLSGNLLYGQVPEVLCAL 282
           +  L     + +  +L          A 
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 66  AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125
           +    ++ F G    +  L  + D L      H N+++     + + A          + 
Sbjct: 11  SSGRENLYFQG----STALRPYHDVLSQWQR-HYNADRNRWHSAWRQANSNNPQIETRTG 65

Query: 126 NKFSGTFPVAI--LGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQN 182
                     +    +     L++R        P Q F +  L  + ++      +LP  
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDT 122

Query: 183 LGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYELGFLREARV 239
           +     L  LT A N    ++P SI  L+   +  L +     LT  LP  L        
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNR--LRELSIRACPELT-ELPEPLASTD---- 174

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299
                             L  ++ L L    +   +P  +  L NL +L + N+  + +G
Sbjct: 175 -----------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG 222

Query: 300 PLCRKLIKNGVLDV-NRNCIHYLPD 323
           P    L K   LD+     +   P 
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPP 247

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 8e-18
 Identities = 58/236 (24%), Positives = 84/236 (35%), Gaps = 36/236 (15%)

Query: 89  DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148
              P+L     + N+ + ++      L  L                       L  L I 
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIF 129

Query: 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGK 208
            N  T S+P       L  L +++N     LP        L+    NN+ T S+P     
Sbjct: 130 GNQLT-SLPVL--PPGLQELSVSDNQL-ASLPALPSELCKLWA--YNNQLT-SLPMLPSG 182

Query: 209 LSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLS 267
           L     + L + +N L   LP     L +     A NNRLT  LP     L+    L +S
Sbjct: 183 L-----QELSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVS 229

Query: 268 GNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           GN L   +P +      L  L +S N  T +  L   L+    L V RN +  LP+
Sbjct: 230 GNRL-TSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLS---LSVYRNQLTRLPE 278

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 54/255 (21%), Positives = 83/255 (32%), Gaps = 36/255 (14%)

Query: 61  PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYE 120
           P  L  + +             +L      L +LS+            S        L +
Sbjct: 120 PSGLCKLWIFGNQLT-------SLPVLPPGLQELSVSDNQLASLPALPSE-------LCK 165

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP 180
           L   NN+ + + P+     + L  L +  N    S+P       L  L+  NN     LP
Sbjct: 166 LWAYNNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNRLTS-LP 217

Query: 181 QNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARV 239
                   L ++   N+ T S+P    +L     + L +  N LT  LP     L     
Sbjct: 218 ALPSGLKELIVS--GNRLT-SLPVLPSEL-----KELMVSGNRLT-SLPMLPSGLLS--- 265

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299
                N+LT  LP SL  L     +NL GN L  +  + L  + +    S     F   G
Sbjct: 266 LSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 300 PLCRKLIKNGVLDVN 314
               +  +   L   
Sbjct: 325 ASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 42/174 (24%), Positives = 61/174 (35%), Gaps = 32/174 (18%)

Query: 165 LDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLL 223
             VL +  +  +  LP  L +     L   +N  T S+P    +L       L +  N L
Sbjct: 42  NAVLNVGESG-LTTLPDCLPAHIT-TLVIPDNNLT-SLPALPPEL-----RTLEVSGNQL 93

Query: 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLE--------------KIERLNLSGN 269
           T  LP     L E  +F      L   LP  L  L                ++ L++S N
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151

Query: 270 LLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
            L   +P +      L  L   NN  T +  L   L +   L V+ N +  LP 
Sbjct: 152 QL-ASLPALPS---ELCKLWAYNNQLTSLPMLPSGLQE---LSVSDNQLASLPT 198

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 238 RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
            V +   + LT  LP  L     I  L +  N L   +P        L  L +S N  T 
Sbjct: 43  AVLNVGESGLTT-LPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTS 95

Query: 298 VGPLCRKLIKNGVLDVNRNCIHYLPDQ 324
           +  L   L++  +       +  LP  
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSG 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 57/236 (24%), Positives = 86/236 (36%), Gaps = 18/236 (7%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +  L  L     +SNK S  IS  LA+L  L  L  +NN+ S   P+ IL    L  L +
Sbjct: 173 LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTN--LDELSL 228

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N     +     +  L  L L NN     L   L     L  L    N+ +   P  +
Sbjct: 229 NGNQLK-DIGTLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQISNISP--L 283

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
             L++ L  +    N L       +  L+         N ++   P  +  L K++RL  
Sbjct: 284 AGLTA-LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
             N +       L  L N+  LS  +N  + + PL   L +   L +N       P
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL-ANLTRITQLGLNDQAWTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 21/237 (8%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +  L +L+    +SN  S  IS  L+ L  L +L   N     T    +     L  LDI
Sbjct: 130 LKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDI 184

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  +  +     +  L+ L   NN     +   LG    L  L+   N+       ++
Sbjct: 185 SSNKVS-DISVLAKLTNLESLIATNNQI-SDIT-PLGILTNLDELSLNGNQLKD--IGTL 239

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             L++  +  L L NN ++   P  L  L +        N+++   P  L  L  +  L 
Sbjct: 240 ASLTN--LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
           L+ N L       +  L NL  L+L  N  + + P+   L K   L    N +  + 
Sbjct: 294 LNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS-SLTKLQRLFFYNNKVSDVS 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 14/212 (6%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +  L  L+     +N+ S  ISP LA L  L  L+++ N+     P++ L    L++L +
Sbjct: 261 LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPISNLKN--LTYLTL 316

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
            FN  +  + P   +  L  LF  NN        +L +   + +L+  +N+ +   P  +
Sbjct: 317 YFNNIS-DISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--L 371

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
             L+  + ++   +   T         +            L    P ++         ++
Sbjct: 372 ANLTR-ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDI 428

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298
           + NL      EV       V +      F+G 
Sbjct: 429 TWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 25/239 (10%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
              L +           + T+S     L  +  L            V  L  N+L+ ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYL--NNLTQINF 75

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  T  + P   +  L  + +NNN         L +   L  LT  NN+ T   P  +
Sbjct: 76  SNNQLT-DITPLKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP--L 130

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             L++  +  L L +N ++      L  L   +     N  +T   P  L  L  +ERL+
Sbjct: 131 KNLTN--LNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLD 183

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL--CRKLIKNGVLDVNRNCIHYLP 322
           +S N +      VL  L NL +L  +NN  + + PL     L +   L +N N +  + 
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDE---LSLNGNQLKDIG 237

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 18/208 (8%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +  L +L     N N+    I   LA L  L +LD++NN+ S   P++ L K  L+ L +
Sbjct: 217 LGILTNLDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNLAPLSGLTK--LTELKL 272

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  + ++ P   +  L  L LN N    +    + +   L YLT   N  +   P  +
Sbjct: 273 GANQIS-NISPLAGLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--V 327

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             L+   ++ LF  NN ++      L  L       A +N+++   P  L  L +I +L 
Sbjct: 328 SSLTK--LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNN 293
           L+        P    A  ++ N   +  
Sbjct: 382 LNDQAWTN-APVNYKANVSIPNTVKNVT 408

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 14/161 (8%)

Query: 164 TLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223
            L    +  +  + ++  +      +         T ++      L    +  L  + L 
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQ--VTTLQADRLG 57

Query: 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD 283
              +   + +L      + SNN+LT   P  L  L K+  + ++ N +       L  L 
Sbjct: 58  IKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLT 112

Query: 284 NLVNLSLSNNYFTGVGPL--CRKLIKNGVLDVNRNCIHYLP 322
           NL  L+L NN  T + PL     L +   L+++ N I  + 
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTNLNR---LELSSNTISDIS 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 5e-16
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 16/240 (6%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
                    +     +     ++        + ELD+S N  S      +     L  L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRS 205
           +  N           + TL  L LNNN       Q L   P++  L  ANN  +  +  S
Sbjct: 65  LSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIER 263
            G       + ++L NN +T     + G     +  D   N +            + +E 
Sbjct: 118 RG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           LNL  N +Y  V   +     L  L LS+N    +GP  +       + +  N +  +  
Sbjct: 174 LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 44/265 (16%), Positives = 77/265 (29%), Gaps = 30/265 (11%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
                   ++     + N  S   +  LA    L  L++S+N    T  +  L    L  
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST--LRT 84

Query: 145 LDIRFNFFT------------------GSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGST 186
           LD+  N+                      V      Q    ++L NN        + G  
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCR 143

Query: 187 PAL-YLTFANNKFTG-SIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDAS 243
             + YL    N+    +         +  +E L L  N +   +        + +  D S
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDT--LEHLNLQYNFIYD-VK-GQVVFAKLKTLDLS 199

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303
           +N+L   +         +  ++L  N L   + + L    NL +  L  N F        
Sbjct: 200 SNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 304 KLIKNGVLDVNRNCIHYLPDQRSTH 328
                 V  V +  +  L  Q    
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEE 282

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 37/242 (15%), Positives = 70/242 (28%), Gaps = 22/242 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           ++ L  L     N+N        +L   P +  L  +NN  S     +         + +
Sbjct: 76  LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYL 127

Query: 148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTGSIP 203
             N  T  +          +  L L  N        +   S+  L +L    N     + 
Sbjct: 128 ANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
             +       ++ L L +N L   +  E             NN+L   +  +L   + +E
Sbjct: 186 GQVVF---AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-GPLCRKLIKNGVLDVNRNCIHYL 321
             +L GN  +           N    +++      + G    +     +      C   L
Sbjct: 241 HFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 322 PD 323
           P 
Sbjct: 300 PA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 2/119 (1%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
               L     +SNK +  + P+      +  + + NNK       A+    +L   D+R 
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 150 NFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGK 208
           N F        F +   V  +      +   QN        L          +P     
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 9e-16
 Identities = 47/236 (19%), Positives = 79/236 (33%), Gaps = 16/236 (6%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
                +     +     ++        + ELD+S N  S      +     L  L++  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKL 209
                      + TL  L LNNN       Q L   P++  L  ANN  +  +  S G  
Sbjct: 69  VLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRG-- 119

Query: 210 SSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLS 267
                + ++L NN +T     + G     +  D   N +            + +E LNL 
Sbjct: 120 --QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 268 GNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
            N +Y  V   +     L  L LS+N    +GP  +       + +  N +  +  
Sbjct: 178 YNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 3e-15
 Identities = 44/255 (17%), Positives = 78/255 (30%), Gaps = 18/255 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
              +     L L + +SN      +  L  L  L  LD++NN         +L    +  
Sbjct: 51  AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIET 103

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTG-SI 202
           L    N  +  V      Q    ++L NN        + G    + YL    N+    + 
Sbjct: 104 LHAANNNIS-RVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 203 PRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
                   +  +E L L  N +   +  ++    + +  D S+N+L   +         +
Sbjct: 162 AELAASSDT--LEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216

Query: 262 ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321
             ++L  N L   + + L    NL +  L  N F              V  V +  +  L
Sbjct: 217 TWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 322 PDQRSTHECALFFLQ 336
             Q            
Sbjct: 276 TGQNEEECTVPTLGH 290

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 22/241 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           ++ L  L     N+N        +L   P +  L  +NN  S     +         + +
Sbjct: 76  LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYL 127

Query: 148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTGSIP 203
             N  T  +          +  L L  N        +   S+  L +L    N     + 
Sbjct: 128 ANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
             +       ++ L L +N L   +  E             NN+L   +  +L   + +E
Sbjct: 186 GQVVF---AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-GPLCRKLIKNGVLDVNRNCIHYL 321
             +L GN  +           N    +++      + G    +     +      C   L
Sbjct: 241 HFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 322 P 322
           P
Sbjct: 300 P 300

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 33/208 (15%), Positives = 52/208 (25%), Gaps = 6/208 (2%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
               L     +SNK +  + P+      +  + + NNK       A+    +L   D+R 
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 150 NFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLT----FANNKFTGSIPRS 205
           N F        F +   V  +      +   QN        L     +            
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 206 IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
           +  L      +L      T  L  E       R  DA   +    +       +    L 
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNN 293
                L  QV     A   L        
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 208 KLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
           K +    ++  + ++ L   L          +  D S N L+      L    K+E LNL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322
           S N+LY +  + L +L  L  L L+NNY   +      +     L    N I  + 
Sbjct: 66  SSNVLY-ETLD-LESLSTLRTLDLNNNYVQELLVG-PSIET---LHAANNNISRVS 115

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 9e-15
 Identities = 50/270 (18%), Positives = 86/270 (31%), Gaps = 47/270 (17%)

Query: 83  TLDGFIDQLPDLSLFHANSNKFSGTIS---------------PKLAQLPYLYELDISNNK 127
            L      L  L + + N    S                   P+L    +L  +D+ NN 
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTP 187
                P        L F+    N     +P    +  L  ++ +NN+  +KLP    S  
Sbjct: 165 LK-KLPDLP---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL-KKLPDLPLSLE 218

Query: 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247
           ++     NN         +  L   L  +   NNLL   LP     L      +  +N L
Sbjct: 219 SIVA--GNNILE--ELPELQNLPF-LTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYL 269

Query: 248 TGPLPCSLGCLEKIERLNLSGN-------------LLYGQVPEVLCALDNLVNLSLSNNY 294
           T  LP     L  ++      +                 ++  +     +L  L++SNN 
Sbjct: 270 TD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328

Query: 295 FTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ 324
              +  L  +L +   L  + N +  +P+ 
Sbjct: 329 LIELPALPPRLER---LIASFNHLAEVPEL 355

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 59/240 (24%), Positives = 90/240 (37%), Gaps = 30/240 (12%)

Query: 84  LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
           L    D  P L    A +N+      P+L  LP+L  +   NN      P   L    L 
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LE 218

Query: 144 FLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP 203
            +    N     +P    +  L  ++ +NN   + LP    S  AL +   +N  T  +P
Sbjct: 219 SIVAGNNILE-ELPELQNLPFLTTIYADNNLL-KTLPDLPPSLEALNVR--DNYLT-DLP 273

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
                L+   +     + L    LP  L +L      +AS+N +   L      LE+   
Sbjct: 274 ELPQSLTFLDVSENIFSGLSE--LPPNLYYL------NASSNEIRS-LCDLPPSLEE--- 321

Query: 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           LN+S N L  ++P +      L  L  S N+   V  L + L +   L V  N +   PD
Sbjct: 322 LNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPLREFPD 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 37/242 (15%)

Query: 84  LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
           L    D    L    A +N       P+L  LP+L  +   NN    T P        L 
Sbjct: 207 LKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLE 260

Query: 144 FLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSI 202
            L++R N+ T  +P     +  LDV     +    +LP NL      YL  ++N+   S+
Sbjct: 261 ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGL-SELPPNLY-----YLNASSNEIR-SL 312

Query: 203 PRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
                 L     E L + NN L   LP     L       AS N L   +P     L++ 
Sbjct: 313 CDLPPSL-----EELNVSNNKLI-ELPALPPRLER---LIASFNHLAE-VPELPQNLKQ- 361

Query: 262 ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321
             L++  N L  + P++  ++++L      N++   V  L + L     L V  N +   
Sbjct: 362 --LHVEYNPLR-EFPDIPESVEDL----RMNSHLAEVPELPQNLK---QLHVETNPLREF 411

Query: 322 PD 323
           PD
Sbjct: 412 PD 413

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 50/245 (20%), Positives = 79/245 (32%), Gaps = 44/245 (17%)

Query: 108 ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV------- 160
           I+P+     +L E    ++  +   PV        +     ++ +  + PP         
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 161 -------FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSS-- 211
                    +    L LNN      LP+      +L    + N  T  +P     L S  
Sbjct: 62  VSRLRDCLDRQAHELELNNLGL-SSLPELPPHLESLVA--SCNSLT-ELPELPQSLKSLL 117

Query: 212 -------------TLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCL 258
                         L+E L ++N     LP EL      ++ D  NN L   LP     L
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSL 175

Query: 259 EKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
           E    +    N L  ++PE L  L  L  +   NN    +  L   L     +    N +
Sbjct: 176 EF---IAAGNNQL-EELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLES---IVAGNNIL 227

Query: 319 HYLPD 323
             LP+
Sbjct: 228 EELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 53/213 (24%), Positives = 75/213 (35%), Gaps = 28/213 (13%)

Query: 113 AQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN 172
              P+L  L  S N  +   P        L   +      +  +PP      L+ L ++N
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-DLPPL-----LEYLGVSN 140

Query: 173 NNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYE 230
           N   +KLP  L ++  L  +   NN     +P     L     E +   NN L   LP E
Sbjct: 141 NQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSL-----EFIAAGNNQLE-ELP-E 190

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL 290
           L  L       A NN L   LP     L   E +    N+L  +    L  L  L  +  
Sbjct: 191 LQNLPFLTAIYADNNSLKK-LPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYA 244

Query: 291 SNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
            NN    +  L   L     L+V  N +  LP+
Sbjct: 245 DNNLLKTLPDLPPSLEA---LNVRDNYLTDLPE 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 31/214 (14%)

Query: 83  TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDL 142
            L      L  L +     +  S          P LY L+ S+N+   +          L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIR-SLCDLPPS---L 319

Query: 143 SFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSI 202
             L++  N     +P       L+ L  + N+   ++P+   +   L++    N      
Sbjct: 320 EELNVSNNKLI-ELPAL--PPRLERLIASFNHL-AEVPELPQNLKQLHV--EYNPLR-EF 372

Query: 203 PRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
           P     +       L +N+ L   +P     L++        N L    P     +E   
Sbjct: 373 PDIPESVED-----LRMNSHLAE-VPELPQNLKQ---LHVETNPLRE-FPDIPESVED-- 420

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT 296
            L ++   +           D L +    +++  
Sbjct: 421 -LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 203 PRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLG------ 256
           PR++      L E L  ++ LT  +P E   ++    +  + +      P   G      
Sbjct: 5   PRNVSNT--FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 257 ------CLEK-IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG 309
                 CL++    L L+   L   +PE      +L +L  S N  T +  L + L    
Sbjct: 62  VSRLRDCLDRQAHELELNNLGL-SSLPE---LPPHLESLVASCNSLTELPELPQSLKSLL 117

Query: 310 VLDVNRNCIHYLPDQ 324
           V + N   +  LP  
Sbjct: 118 VDNNNLKALSDLPPL 132

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 10/238 (4%)

Query: 92  PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF 151
            +  L     N+       + A  P+L EL+++ N  S   P A     +L  L +R N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 152 FTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP-RSIG 207
               +P  VF  +  L  L ++ N  +  L         L  L   +N     I  R+  
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 208 KLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
            L+S  +E L L    LT      L  L    V    +  +      S   L +++ L +
Sbjct: 150 GLNS--LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPD 323
           S       +        NL +LS+++   T V     R L+    L+++ N I  +  
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 10/235 (4%)

Query: 91  LPDLSLFHANSNKFSGTISPKL-AQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
           L +L+    + NK    +   +   L  L  L++ +N        A  G N L  L +  
Sbjct: 103 LSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 150 NFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
              T S+P +    +  L VL L + N       +      L  L  ++  +  ++  + 
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYE-LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
               + L  +   +  LT  +PY  +  L   R  + S N ++      L  L +++ + 
Sbjct: 221 LYGLN-LTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIH 319
           L G  L    P     L+ L  L++S N  T +   +   +     L ++ N + 
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 201 SIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLE 259
           ++P  I     T   +L L  N +      E          + + N ++   P +   L 
Sbjct: 25  AVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGVLDVNRNCI 318
            +  L L  N L      V   L NL  L +S N    +     + L     L+V  N +
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 319 HYLPD 323
            Y+  
Sbjct: 141 VYISH 145

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 232 GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS 291
           G   E R+ D   NR+             +E L L+ N++    P     L NL  L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 292 NNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ 324
           +N    +   +   L     LD++ N I  L D 
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 5e-14
 Identities = 45/271 (16%), Positives = 94/271 (34%), Gaps = 27/271 (9%)

Query: 85  DGFIDQLPDLSLFHANSNKFSG-TISPKLAQLPYLYELDISNNKFSGTFPVAI--LGKND 141
           DG+   L  L+    + N+     + P   +L  L  +D S+N+        +  L    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 142 LSFLDIRFNFFTGSVPPQVFMQ--------TLDVLFLNNNNFMQKLPQNLGSTPA----- 188
           LSF  +  N    S     + +         L++L ++ N +   +  N  +  +     
Sbjct: 176 LSFFSLAANSLY-SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234

Query: 189 --------LYLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARV 239
                   +   F  +        +   L+ + +  L L +  +          L++ +V
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299
            + + N++      +   L+ ++ LNLS NLL          L  +  + L  N+   + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 300 PLC-RKLIKNGVLDVNRNCIHYLPDQRSTHE 329
               + L K   LD+  N +  +    S  +
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 51/286 (17%), Positives = 90/286 (31%), Gaps = 14/286 (4%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           D     L +L + + + N      S     LP +  +D+  N  +            L  
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPR 204
           LD+R N  T ++    F+ ++  +FL+ N  +     NL +     +  + N+       
Sbjct: 367 LDLRDNALT-TIH---FIPSIPDIFLSGNKLVTLPKINLTAN---LIHLSENRLENLDIL 419

Query: 205 SIGKLSSTLIEVLFLNNLLTGCLPYEL-GFLREARVFDASNNRL-----TGPLPCSLGCL 258
                   L  ++   N  + C   +               N L     T         L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 259 EKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
             ++ L L+ N L    P V   L  L  LSL++N  T +           +LD++RN +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL-SHNDLPANLEILDISRNQL 538

Query: 319 HYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPS 364
                        L     +F        FI     +  +    P+
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPA 584

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 13/195 (6%)

Query: 115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN 172
           L     L +S N        +      L  L++   +   ++  + F  +  L +L L +
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 173 NNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPY 229
           +      P        L  L       + ++ +     +   +  L L  N + +  L  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 230 ELGFLREARVFDASNNRLTGPLPCSLGCLE--KIERLNLSGNLLYGQVPEVLCALDN--- 284
             G L   +  D S+N++       L  L+   +   +L+ N LY +V        N   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 285 ---LVNLSLSNNYFT 296
              L  L +S N +T
Sbjct: 203 NMVLEILDVSGNGWT 217

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 43/289 (14%), Positives = 80/289 (27%), Gaps = 54/289 (18%)

Query: 89  DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTF-PVAILGKNDLSFLDI 147
             L        + N      +     L  L  L++ +     T    A     +L  LD+
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 148 RFNFFTGSVPPQVF----------------------------MQTLDVLFLNNNNFMQ-K 178
             +     + P  F                            ++ L  L L+ N      
Sbjct: 81  GSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 179 LPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLN-NLLTGCLPYELGFLRE 236
           L  + G   +L  + F++N+        +  L    +    L  N L   +  + G    
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 237 A------RVFDASNNRLTGPLPC------------SLGCLEKIERLNLSGNLLYGQVPEV 278
                   + D S N  T  +              SL     I       + +       
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 279 LCALD--NLVNLSLSNNYFTGVGPLC-RKLIKNGVLDVNRNCIHYLPDQ 324
              L   ++ +L LS+ +   +       L    VL++  N I+ + D+
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 33/162 (20%), Positives = 51/162 (31%), Gaps = 7/162 (4%)

Query: 167 VLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226
           + F    N   ++PQ L +T  L L+F  N        S   L    +  L         
Sbjct: 8   IAFYRFCNL-TQVPQVLNTTERLLLSF--NYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV--PEVLCALDN 284
                  L   R+ D  ++++    P +   L  +  L L    L   V        L  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 285 LVNLSLSNNYFTGVGPLC--RKLIKNGVLDVNRNCIHYLPDQ 324
           L  L LS N    +       KL     +D + N I  + + 
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 8e-13
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 19/205 (9%)

Query: 138 GKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLN------NNNFMQKLPQNLGSTPALYL 191
           G   L +L  R +           +++L +  L        +  +    + LG +    L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREA-----RVFDASNNR 246
           T  N + TG+ P  + + +   + +L L N+        L  L++      +V   +   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQ--VPEVLC--ALDNLVNLSLSNNYFTGVGPLC 302
                   +     +  L+LS N   G+  +   LC      L  L+L N        +C
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 303 RKLIKNG----VLDVNRNCIHYLPD 323
             L         LD++ N +     
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 9e-11
 Identities = 49/244 (20%), Positives = 86/244 (35%), Gaps = 31/244 (12%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGK--NDLSFLDI 147
            L  L++  A         + ++  +  L EL + N + +GT P  +L     DL+ L++
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 148 RFNFFTGSVP-----PQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGS 201
           R   +           Q     L VL +   + +    + +   PAL  L  ++N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 202 IPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
                               L++   P +   L+   + +A     +G          ++
Sbjct: 189 RG------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230

Query: 262 ERLNLSGNLLYGQVPEVLCA-LDNLVNLSLSNNYFTGV-GPLCRKLIKNGVLDVNRNCIH 319
           + L+LS N L        C     L +L+LS      V   L  KL    VLD++ N + 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLD 287

Query: 320 YLPD 323
             P 
Sbjct: 288 RNPS 291

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 37/237 (15%), Positives = 61/237 (25%), Gaps = 50/237 (21%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122
           +L  + L ++ +   +     L  ++   P L +              ++   P L  LD
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 123 ISNNKFSGTFPV-AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ 181
           +S+N   G   + + L       L                 Q L +              
Sbjct: 180 LSDNPELGERGLISALCPLKFPTL-----------------QVLALRNAGMETPSGVCSA 222

Query: 182 NLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240
              +   L  L  ++N    +         S L                           
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL------------------------NSL 258

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
           + S   L            K+  L+LS N L    P     L  + NLSL  N F  
Sbjct: 259 NLSFTGLKQVPKGL---PAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 30/125 (24%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 79  LAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILG 138
           L +         L  L+L +A     SG  S   A    L  LD+S+N            
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 139 KND-LSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANN 196
               L+ L++ F      VP  +    L VL L+ N    + P      P +  L+   N
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRL-DRNPSPDEL-PQVGNLSLKGN 306

Query: 197 KFTGS 201
            F  S
Sbjct: 307 PFLDS 311

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 41/216 (18%), Positives = 70/216 (32%), Gaps = 12/216 (5%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
           +      L L +    +F         +L  L  L  ++NK    F    L    L FLD
Sbjct: 302 YNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLD 353

Query: 147 IRFNFFTG-SVPPQVFMQTLDVLFLN-NNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
           +  N  +      Q    T  + +L+ + N +  +  N      L +L F ++       
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL-PCSLGCLEKIE 262
            S+      LI +   +             L    V   + N       P     L  + 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298
            L+LS   L    P    +L +L  L++++N    V
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK--FSGTFPVAILGKNDLSFLDI 147
           +L  L      SNK     +     LP L  LD+S N   F G    +  G   L +LD+
Sbjct: 323 KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPR 204
            FN    ++      ++ L+ L   ++N  Q    +   S   L YL  ++     +   
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 205 SIGKLSSTLIEVLFL--NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
               LSS  +EVL +  N+     LP     LR     D S  +L    P +   L  ++
Sbjct: 440 IFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
            LN++ N L      +   L +L  + L  N
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 38/268 (14%)

Query: 62  DNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYEL 121
           + L  + +        +     +    + L ++S F   S           +       L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHL 309

Query: 122 DISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNN--NFMQKL 179
           ++ N KF        L    L  L    N    +   +V + +L+ L L+ N  +F    
Sbjct: 310 ELVNCKFGQ---FPTLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 180 PQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREAR 238
            Q+   T +L YL  + N    ++  +   L    +E L                     
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ--LEHLDF------------------- 403

Query: 239 VFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
                ++ L           L  +  L++S          +   L +L  L ++ N F  
Sbjct: 404 ----QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 298 VGP--LCRKLIKNGVLDVNRNCIHYLPD 323
                +  +L     LD+++  +  L  
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 43/252 (17%), Positives = 74/252 (29%), Gaps = 21/252 (8%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
                LD+S N        +     +L  LD+       ++    +  +  L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 174 NFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYE 230
                         +L  L              IG L +  ++ L +  N + +  LP  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLPEY 144

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEK----IERLNLSGNLLYGQVPEVLCALDNLV 286
              L      D S+N++       L  L +       L+LS N +    P     +  L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203

Query: 287 NLSLSNNYFTGVGP--LCRKLIKNGVLD------VNRNCIHYLPDQRSTHECALFFLQPR 338
            L+L NN+ +        + L    V         N   +           C L   + R
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 339 FCFYPSWYNFIP 350
             +   + + I 
Sbjct: 264 LAYLDYYLDDII 275

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 38/254 (14%), Positives = 64/254 (25%), Gaps = 18/254 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           DG    L  LS      N          + L  L +L       +      I     L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-----YLTFANNK 197
           L++  N       P+ F  +  L+ L L++N        +L     +      L  + N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFD------ASNNRLTGPL 251
               I     K        L  N      +   +  L    V         +   L    
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 252 PCSLGCLEKIERLNLSGN---LLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN 308
             +L  L  +                + ++   L N+ + SL +     V          
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-YNFGW 306

Query: 309 GVLDVNRNCIHYLP 322
             L++        P
Sbjct: 307 QHLELVNCKFGQFP 320

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 83  TLDGFIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKND 141
           T+      L  L       +             L  L  LDIS+      F     G + 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 142 LSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNK 197
           L  L +  N F  +  P +F  ++ L  L L+     ++L      S  +L  L  A+N+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQ 505

Query: 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLRE 236
              S+P  I    ++L ++    N    C    + +L  
Sbjct: 506 LK-SVPDGIFDRLTSLQKIWLHTNPWD-CSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 7/131 (5%)

Query: 195 NNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPC 253
              F   IP ++        + L L  N L     Y      E +V D S   +      
Sbjct: 16  ELNFY-KIPDNL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC-RKLIKNGVLD 312
           +   L  +  L L+GN +          L +L  L         +       L     L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 313 VNRNCIHYLPD 323
           V  N I     
Sbjct: 131 VAHNLIQSFKL 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 46/242 (19%), Positives = 77/242 (31%), Gaps = 37/242 (15%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
            D      L   N ++          +   +  L I                  +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL----YLTFANNKFTGS 201
             +     VP      +++L+ L L+ N  +++  +N     A      L  + N    S
Sbjct: 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-S 375

Query: 202 IPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
           + ++   L +       L NL                  D S N    P+P S    EK+
Sbjct: 376 MQKTGEILLT-------LKNL---------------TSLDISRNTFH-PMPDSCQWPEKM 412

Query: 262 ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321
             LNLS   +   V    C    L  L +SNN          +L +   L ++RN +  L
Sbjct: 413 RFLNLSSTGI-RVVKT--CIPQTLEVLDVSNNNLDSFSLFLPRLQE---LYISRNKLKTL 466

Query: 322 PD 323
           PD
Sbjct: 467 PD 468

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 51/254 (20%), Positives = 81/254 (31%), Gaps = 31/254 (12%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLF-----HANSNKFSGTISPKLAQLPY 117
            L+ +       NG     P+    + +L  +        H         +S   + L  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPP----QVFMQTLDVLFLNNN 173
           +  + + N+K              L FLD+  N            +    +L  L L+ N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 174 NF--MQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNL--LTGC 226
           +   MQK  + L +   L  L  + N F   +P S        +  L L    +  +  C
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK--MRFLNLSSTGIRVVKTC 428

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286
           +P  L  L      D SNN L       L  L+    L +S N L       L     L+
Sbjct: 429 IPQTLEVL------DVSNNNLDS-FSLFLPRLQ---ELYISRNKLKTLPDASL--FPVLL 476

Query: 287 NLSLSNNYFTGVGP 300
            + +S N    V  
Sbjct: 477 VMKISRNQLKSVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 25/265 (9%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
                 L  L+     +       S  L  +  ++ L +  ++ +    +     + + +
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 145 LDIRFN----FFTGSVPPQVFMQTLDVLFLNNNNF-------MQKLPQNLGSTPALYLTF 193
           L++R      F    +P       +  L    +         + KL + +     +    
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 194 ANNKFTGSIPRS-------IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNN 245
                 G    S       +GK+ +  I  L +    L   L      L + +     N+
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 246 RLTGPLPCSLGCLEKIERLNLSGNLL---YGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
           ++          L+ +E L+LS NL+   Y +      A  +L  L LS N+   +    
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 303 RKLIKNG---VLDVNRNCIHYLPDQ 324
             L+       LD++RN  H +PD 
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDS 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 19/238 (7%)

Query: 63  NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122
            +  + +  +    F L    L      L  +      ++K           L  L  LD
Sbjct: 282 KVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340

Query: 123 ISNNKFSGTF---PVAILGKNDLSFLDIRFNFFTG-SVPPQVF--MQTLDVLFLNNNNFM 176
           +S N     +            L  L +  N         ++   ++ L  L ++ N F 
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF- 399

Query: 177 QKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLR 235
             +P +      + +L  ++      +   I       +EVL ++N         L  L+
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----PQTLEVLDVSNNNLDSFSLFLPRLQ 454

Query: 236 EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
           E      S N+L      SL     +  + +S N L      +   L +L  + L  N
Sbjct: 455 E---LYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 37/251 (14%), Positives = 67/251 (26%), Gaps = 16/251 (6%)

Query: 101 SNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV 160
            NK +      L     L  L + +++ +     A      L  LD+  N  + S+    
Sbjct: 35  FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSW 93

Query: 161 F--MQTLDVLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEV 216
           F  + +L  L L  N +    +     +   L  L   N +    I R      ++L E+
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 217 LFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP 276
                 L       L  +R+        +     L      L  +  L L    L     
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 277 EVLCALDNLVNLSLSNN-----------YFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQR 325
             L   +    +                    +     +L +    D   N +       
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273

Query: 326 STHECALFFLQ 336
           S     L  ++
Sbjct: 274 SDVVSELGKVE 284

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 35/277 (12%), Positives = 79/277 (28%), Gaps = 15/277 (5%)

Query: 115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN 172
              +  LD+S NK +      +    +L  L ++ +    ++    F  + +L+ L L++
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 173 NNFMQKLPQN-LGSTPAL-YLTFANNKFTG-SIPRSIGKLSSTLIEVLFL--NNLLTGCL 227
           N+    L  +  G   +L YL    N +    +      L++  ++ L +      +   
Sbjct: 84  NHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN--LQTLRIGNVETFSEIR 140

Query: 228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVN 287
             +   L      +     L      SL  +  I  L L  +     +      L ++  
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 288 LSLSNNY----FTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYP 343
           L L +           P+         L    + +                      F  
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 344 SWYNFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNR 380
              N +     S         +  + ++    + +  
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 32/210 (15%), Positives = 72/210 (34%), Gaps = 15/210 (7%)

Query: 121 LDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQK 178
            D  +  F+ + P  +     +  LD+ FN  T  +          L VL L ++     
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI-NT 64

Query: 179 LPQN-LGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL--NNLLTGCLPYELGFL 234
           +  +   S  +L +L  ++N  +       G LSS  ++ L L  N   T  +      L
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS--LKYLNLMGNPYQTLGVTSLFPNL 122

Query: 235 REARVFD-ASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
              +     +    +         L  +  L +    L     + L ++ ++ +L+L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 294 YFTGVGPLCRKLIKN-GVLDVNRNCIHYLP 322
               +  +   ++ +   L++    +    
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQ 212

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 44/282 (15%), Positives = 83/282 (29%), Gaps = 41/282 (14%)

Query: 61  PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYE 120
             ++  I   ++  +            +  +  L L   N  +F  +  P       + +
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 121 LDISNNKFSG-------TFPVAILGKNDLSFLDIRFNFFTGSVP---------PQVFMQT 164
           L    +  +             IL  +++ F D   N      P          +V   T
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 165 LDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223
           +  L +        L         +  +T  N+K    +P S  +   +L  +    NL+
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLY--GQVPEVLCA 281
                                           G    ++ L LS N L    +  E+L  
Sbjct: 347 V---------------------EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           L NL +L +S N F  +   C+   K   L+++   I  +  
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 23/246 (9%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           D        L     +SN+ +  +   L  +P L+  ++S N  S T  + I     +  
Sbjct: 164 DDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIA----VEE 215

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
           LD   N     V   V ++ L +L L +NN        L + P L  +  + N+    + 
Sbjct: 216 LDASHNSIN-VVRGPVNVE-LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
               K+    +E L++ NN L   L      +   +V D S+N L   +  +    +++E
Sbjct: 272 HPFVKMQR--LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLE 327

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHY 320
            L L  N +   +   L     L NL+LS+N +       L R + +  V D +++C   
Sbjct: 328 NLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 321 LPDQRS 326
              +  
Sbjct: 385 YQLEHG 390

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 19/241 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKL-AQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
                 +P L++     N  S ++   +    P L  L +SNN               L 
Sbjct: 116 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 144 FLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSI 202
            L +  N  T  V   +   +L    ++ N         L    A+  L  ++N      
Sbjct: 175 NLQLSSNRLT-HVDLSLI-PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN--- 224

Query: 203 PRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
              +    +  + +L L +N LT      L         D S N L   +      ++++
Sbjct: 225 --VVRGPVNVELTILKLQHNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 262 ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321
           ERL +S N L   +      +  L  L LS+N+   V     +  +   L ++ N I  L
Sbjct: 281 ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339

Query: 322 P 322
            
Sbjct: 340 K 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 43/236 (18%), Positives = 71/236 (30%), Gaps = 23/236 (9%)

Query: 94  LSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGK-NDLSFLDIRFNFF 152
               H +          +   L     +   N+      P A+L     +  L++     
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 87

Query: 153 TGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI-GK 208
              +    F    T+  L++  N      P    + P L  L    N  + S+PR I   
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 209 LSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLS 267
                +  L + NN L              +    S+NRLT      L  +  +   N+S
Sbjct: 146 TPK--LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVS 200

Query: 268 GNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP 322
            NLL       L     +  L  S+N    V   +  +L     L +  N +    
Sbjct: 201 YNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTI---LKLQHNNLTDTA 248

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 2/130 (1%)

Query: 196 NKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS 254
           +  T  +      ++    +++   N+ +       L   R+  + + ++ ++      +
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 94

Query: 255 LGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDV 313
                 I++L +  N +    P V   +  L  L L  N  + +   +     K   L +
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 314 NRNCIHYLPD 323
           + N +  + D
Sbjct: 155 SNNNLERIED 164

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 44/250 (17%), Positives = 75/250 (30%), Gaps = 19/250 (7%)

Query: 78  ELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAIL 137
           +     +D  +         H +          +   L     +   N+      P A+L
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 138 GK-NDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTF 193
                +  L++        +    F    T+  L++  N      P    + P L  L  
Sbjct: 66  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 194 ANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPC 253
             N  + S+PR I   +  L  +   NN L              +    S+NRLT     
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V 180

Query: 254 SLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLD 312
            L  +  +   N+S NLL       L     +  L  S+N    V   +  +L     L 
Sbjct: 181 DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTI---LK 232

Query: 313 VNRNCIHYLP 322
           +  N +    
Sbjct: 233 LQHNNLTDTA 242

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 23/237 (9%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           D        L     +SN+ +  +   L  +P L+  ++S N  S T  + I     +  
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIA----VEE 209

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
           LD   N     V   V ++ L +L L +NN        L + P L  +  + N+    + 
Sbjct: 210 LDASHNSIN-VVRGPVNVE-LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 204 RSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIE 262
               K+    +E L++ NN L   L      +   +V D S+N L   +  +    +++E
Sbjct: 266 HPFVKMQR--LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLE 321

Query: 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG--VGPLCRKLIKNGVLDVNRNC 317
            L L  N +   +         L NL+LS+N +    +  L R + +  V D +++C
Sbjct: 322 NLYLDHNSI-VTLKLS--THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 19/241 (7%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKL-AQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
                 +P L++     N  S ++   +    P L  L +SNN               L 
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 144 FLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSI 202
            L +  N  T  V   +   +L    ++ N         L    A+  L  ++N      
Sbjct: 169 NLQLSSNRLT-HVDLSLI-PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN--- 218

Query: 203 PRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI 261
              +    +  + +L L +N LT      L         D S N L   +      ++++
Sbjct: 219 --VVRGPVNVELTILKLQHNNLTD-TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 262 ERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321
           ERL +S N L   +      +  L  L LS+N+   V     +  +   L ++ N I  L
Sbjct: 275 ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333

Query: 322 P 322
            
Sbjct: 334 K 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 17/130 (13%), Positives = 46/130 (35%), Gaps = 2/130 (1%)

Query: 196 NKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS 254
           +  T  +      ++    +++   N+ +       L   R+  + + ++ ++      +
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 255 LGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDV 313
                 I++L +  N +    P V   +  L  L L  N  + +   +     K   L +
Sbjct: 89  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 314 NRNCIHYLPD 323
           + N +  + D
Sbjct: 149 SNNNLERIED 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 12/209 (5%)

Query: 91  LPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
           L  L +   + N    TI       L  L  L++ +N+ +     A +  + L  L +R 
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 150 NFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRS 205
           N    S+P   F  + +L  L L     +  + +        L YL  A       IP +
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           +  L    ++ L L  N L+   P     L   +      +++      +   L+ +  +
Sbjct: 203 LTPLIK--LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
           NL+ N L     ++   L +L  + L +N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 11/213 (5%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
                L++  N+       +      L  L +  N    ++    F  +  L+ L L +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 174 NFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRSI-GKLSSTLIEVLFLNNLLTGCLPYE 230
             +  +P         L  L   NN    SIP     ++ S     L     L+      
Sbjct: 123 R-LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL 290
              L   R  + +   L   +P +L  L K++ L+LSGN L    P     L +L  L +
Sbjct: 181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 291 SNNYFTGVGPLC-RKLIKNGVLDVNRNCIHYLP 322
             +    +       L     +++  N +  LP
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 91  LPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
           L  L +     N     I       L  L  L++ +N  +     A    + L  L +R 
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 150 NFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRS 205
           N    S+P   F  + +L  L L     ++ + +        L YL          +P +
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-N 213

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           +  L    +E L +  N      P     L   +     N++++     +   L  +  L
Sbjct: 214 LTPLVG--LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
           NL+ N L     ++   L  LV L L +N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 24/261 (9%)

Query: 100 NSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPP 158
             N     I       L +L  L +  N        A  G   L+ L++  N+ T  +P 
Sbjct: 83  MENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPS 140

Query: 159 QVF--MQTLDVLFLNNNNFMQKLP----QNLGSTPALYLTFANNKFTGSIPRSIGKLSST 212
             F  +  L  L+L NN   + +P      + S   L L     K       +   L + 
Sbjct: 141 GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFN- 197

Query: 213 LIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
            ++ L L    +   +P  L  L      + S N      P S   L  +++L +  + +
Sbjct: 198 -LKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRN---C---IHYLPDQ 324
                     L +LV L+L++N  + +   L   L     L ++ N   C   I +L   
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWW 314

Query: 325 RSTHECALFFLQPRFCFYPSW 345
              +         R C  P  
Sbjct: 315 LREYIPTNSTCCGR-CHAPMH 334

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 7/172 (4%)

Query: 155 SVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTL 213
            VP  +   T   L L  NN              L  L    N        +   L+S  
Sbjct: 68  EVPQGIPSNT-RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-- 124

Query: 214 IEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSG-NLL 271
           +  L L +N LT        +L + R     NN +      +   +  + RL+L     L
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL 184

Query: 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
                     L NL  L+L       +  L   L+    L+++ N    +  
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFPEIRP 235

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 3e-09
 Identities = 46/316 (14%), Positives = 89/316 (28%), Gaps = 28/316 (8%)

Query: 30  KNTITSDPFNITST----WIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLD 85
           +N   +DP + ++     W+      +    C H       +++             TL 
Sbjct: 216 QNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLL 275

Query: 86  GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
             +D+ P    +     +   +       LP     D                + +   L
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWL-CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334

Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTG-SIPR 204
             R   +         +   + L +  +  +Q   ++      L         T   + R
Sbjct: 335 KDRPECWCRDSATDEQLFRCE-LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 205 SIGKLSSTLIEVLFLNNLLT-----------------GCLPYELGFLREARVFDASNNRL 247
           ++  L      + + + L                              + RV   ++  L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK 307
           T  + C L  L  +  L+LS N L   +P  L AL  L  L  S+N    V  +   L +
Sbjct: 454 T--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGV-ANLPR 509

Query: 308 NGVLDVNRNCIHYLPD 323
              L +  N +     
Sbjct: 510 LQELLLCNNRLQQSAA 525

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
             D   D  LF    +    T+    L     L EL+  N     T  + +   + L + 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS 205
                +F+ ++     M+   +  L +   ++     +       L  A+   T  +   
Sbjct: 402 KETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-H 458

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           + +L   L+  L L +N L   LP  L  LR   V  AS+N L   +   +  L +++ L
Sbjct: 459 LEQL--LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL 513

Query: 265 NLSGNLLYGQVPEV--LCALDNLVNLSLSNNYFTGVGPLCRK 304
            L  N L  Q   +  L +   LV L+L  N       LC++
Sbjct: 514 LLCNNRL-QQSAAIQPLVSCPRLVLLNLQGN------SLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 60  PPDNLTAIALASIDFNGFEL-AAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL 118
             D+ T   L   + +  +     +      +L +L   +         +   L  L Y 
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401

Query: 119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQK 178
            E     +      P            D+R  F   +   ++    + VL L + + +  
Sbjct: 402 KETLQYFSTLKAVDP-----MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTV 455

Query: 179 LPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLRE 236
           L  +L     + +L  ++N+   ++P ++  L    +EVL   +N L   +   +  L  
Sbjct: 456 LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRC--LEVLQASDNALE-NVD-GVANLPR 509

Query: 237 ARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGN 269
            +     NNRL        L    ++  LNL GN
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 19/223 (8%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
               L  ++   A     + TI   +  L  L  L++ +N+ +   P+  L    ++ L+
Sbjct: 36  TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAPLKNL--TKITELE 91

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRS 205
           +  N    +V     +Q++  L L +          L     L  L    N+ T +I   
Sbjct: 92  LSGNPLK-NVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NIS-P 146

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           +  L++  ++ L + N  ++   P  L  L +     A +N+++   P  L  L  +  +
Sbjct: 147 LAGLTN--LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEV 200

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK 307
           +L  N +       L    NL  ++L+N   T         + 
Sbjct: 201 HLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 39/217 (17%)

Query: 108 ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV 167
           I P    L    ++    +  + T   A L  + ++ L       T ++    ++  L  
Sbjct: 12  IFP-DPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVT-TIEGVQYLNNLIG 67

Query: 168 LFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226
           L L +N  +  L   L +   +  L  + N        ++  ++        L ++    
Sbjct: 68  LELKDNQ-ITDLA-PLKNLTKITELELSGNPLK-----NVSAIAG-------LQSI---- 109

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286
                      +  D ++ ++T   P  L  L  ++ L L  N +       L  L NL 
Sbjct: 110 -----------KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQ 154

Query: 287 NLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
            LS+ N   + + PL   L K   L  + N I  +  
Sbjct: 155 YLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDISP 190

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 55/221 (24%), Positives = 77/221 (34%), Gaps = 25/221 (11%)

Query: 90  QLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFS----GTFPVAILGKNDLSF 144
            L  L      +NK S  I  K  + L  L +L IS N                   L  
Sbjct: 76  GLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-------SLVE 127

Query: 145 LDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTG 200
           L I  N     VP  VF  ++ ++ + +  N                L YL  +  K T 
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT- 185

Query: 201 SIPRSIGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLE 259
            IP+    L  TL E L L +N +      +L    +       +N++      SL  L 
Sbjct: 186 GIPKD---LPETLNE-LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
            +  L+L  N L  +VP  L  L  L  + L  N  T VG 
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 22/217 (10%)

Query: 91  LPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKF-SGTFPVAILGKNDLSFLDIR 148
              L     + N+    +     + L  +  +++  N   +  F         L++L I 
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRSI 206
               T  +P  +  +TL+ L L++N   Q +    L     L  L   +N+       S+
Sbjct: 181 EAKLT-GIPKDLP-ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLT-------GPLPCSLGCL 258
             L +  +  L L NN L+  +P  L  L+  +V     N +T        P+   +   
Sbjct: 238 SFLPT--LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK-R 293

Query: 259 EKIERLNLSGNLLYGQV--PEVLCALDNLVNLSLSNN 293
                ++L  N +      P     + + + +   N 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 6e-09
 Identities = 40/218 (18%), Positives = 83/218 (38%), Gaps = 17/218 (7%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
             ++L  +    AN++    ++   +  LP + +L ++ NK +   P+  L    L +L 
Sbjct: 38  TQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLF 93

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRS 205
           +  N     +     ++ L  L L +N  +  +   L   P L  L   NNK T  I   
Sbjct: 94  LDENKIK-DLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKIT-DIT-V 148

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
           + +L+   ++ L L +N ++  +P  L  L + +    S N ++      L  L+ ++ L
Sbjct: 149 LSRLTK--LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 202

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
            L       +       L     +  ++        + 
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
            D   +    +      +  ++    +L  + ++  +N+       +  L    ++ L +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFL 72

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  T  + P   ++ L  LFL+ N  ++ L  +L     L  L+  +N  +      I
Sbjct: 73  NGNKLT-DIKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-----DI 124

Query: 207 GKLSS-TLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
             L     +E L+L NN +T      L  L +       +N+++  +P  L  L K++ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN----GVLDVNRNCIHY 320
            LS N +       L  L NL  L L +          +  +         D +      
Sbjct: 181 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 321 LPDQRSTHECALFFLQPRFCFYPSWYNFIP 350
           + D     +  + +  P F    S+  + P
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 16/218 (7%)

Query: 89  DQLPDLSLFHANSNKFSGTISPKL-AQLPYLYELDISNNKFSGTFPVAILGK-NDLSFLD 146
             L  L     + N  S  +S      L  L  L++  N +      ++      L  L 
Sbjct: 97  SSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155

Query: 147 IRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIP 203
           +        +  + F  +  L+ L ++ ++     P++L S   + +L     +    + 
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYEL--------GFLREARVFDASNNRLTGPLPCSL 255
                ++S++  +   +  L      EL              R    ++  L   +   L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 256 GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
             +  +  L  S N L      +   L +L  + L  N
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF 175
           +  LD+SNN+ +      +    +L  L +  N    ++    F  + +L+ L L+ N  
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY- 111

Query: 176 MQKLPQNL-GSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE-LG 232
           +  L  +      +L +L    N +      S+    + L  +   N      +  +   
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 233 FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN 292
            L      +   + L    P SL  ++ +  L L        +   +    ++  L L +
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 293 NYF---------TGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
                       TG      K      + +    +  +  
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 59/272 (21%), Positives = 87/272 (31%), Gaps = 45/272 (16%)

Query: 90  QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149
           QL  LSL   N   F G  S        L  LD+S N    T     LG   L  LD + 
Sbjct: 53  QLTKLSLSS-NGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 150 NFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIG 207
           +         VF  ++ L  L +++ +  +     +              F G       
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI--------------FNG------- 148

Query: 208 KLSSTLIEVLFL--NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
            LSS  +EVL +  N+     LP     LR     D S  +L    P +   L  ++ LN
Sbjct: 149 -LSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-----GPLCRKLIKNGVLDVNRN---C 317
           +S N  +         L++L  L  S N+               L     L++ +N   C
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA---FLNLTQNDFAC 262

Query: 318 ---IHYLPDQRSTHECALFFLQPRFCFYPSWY 346
                            L  ++   C  PS  
Sbjct: 263 TCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 42/258 (16%), Positives = 84/258 (32%), Gaps = 21/258 (8%)

Query: 86  GFIDQLPDLSLFHANSNKFSGTISPKLAQ---LPYLYELDISNNKFSGTFPVAILGKNDL 142
             I  L    +       +     P+  Q      L+ +  +N +F     V++    +L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 143 SFLDIRFN-------FFTGSVPPQVFMQTLDVLFLNNNNF----MQKLPQNLGSTPALYL 191
              +I+         +F   +        L  L LNN         ++ Q +  T   Y 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL--PYELGF--LREARVFDASNNRL 247
           + +N K  G +       S T ++ L ++ +++     P    +       + + + +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR---K 304
                     +     L+ S NLL   V E    L  L  L L  N    +  +     +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 305 LIKNGVLDVNRNCIHYLP 322
           +     LD+++N + Y  
Sbjct: 373 MKSLQQLDISQNSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 19/248 (7%)

Query: 89  DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND-----LS 143
            +L +L+L +  +   S     +L     ++   ISN K  G         +      LS
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 144 FLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFT 199
              +  + F       ++     +++     +   + +     S  +  L+L F+NN  T
Sbjct: 280 IHQVVSDVFGFP-QSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 200 GSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGF---LREARVFDASNNRLTGPLPCSL- 255
            ++  + G L+     +L +N L    L         ++  +  D S N ++        
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 256 GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR 315
              + +  LN+S N+L   +   L     +  L L +N    +     KL     L+V  
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453

Query: 316 NCIHYLPD 323
           N +  +PD
Sbjct: 454 NQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 36/213 (16%)

Query: 62  DNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYEL 121
           +  + + + +   +G  +          ++        ++N  + T+      L  L  L
Sbjct: 297 EIFSNMNIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 122 DISNNKFSGTFPVAILGKN--DLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ 177
            +  N+      +A +      L  LDI  N  +           ++L  L +++N    
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 178 KLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLRE 236
            + + L   P +  L   +NK   SIP+ + KL +  ++ L +                 
Sbjct: 414 TIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEA--LQELNV----------------- 451

Query: 237 ARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN 269
                 ++N+L          L  ++++ L  N
Sbjct: 452 ------ASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 17/197 (8%)

Query: 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ 177
            L+IS N  S  +   IL  + L  L I  N     +   VF   Q L+ L L++N  + 
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK-LV 82

Query: 178 KLP-QNLGSTPALYLTFANNKFTGSIPRS--IGKLSSTLIEVLFL-NNLLTGCLPYELGF 233
           K+      +   L L  + N F  ++P     G +S   ++ L L    L       +  
Sbjct: 83  KISCHPTVNLKHLDL--SFNAFD-ALPICKEFGNMSQ--LKFLGLSTTHLEKSSVLPIAH 137

Query: 234 LREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL--CALDNLVNLSLS 291
           L  ++V                  L+     +L       +    +   ++  + NL LS
Sbjct: 138 LNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 292 NNYFTGVGPLCRKLIKN 308
           N         C   +  
Sbjct: 196 NIKCVLEDNKCSYFLSI 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 47/200 (23%), Positives = 71/200 (35%), Gaps = 10/200 (5%)

Query: 100 NSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQ 159
           + N+ S   +        L  L + +N  +     A  G   L  LD+  N    SV P 
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 160 VF--MQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIP-RSIGKLSSTLI 214
            F  +  L  L L+     Q+L         AL YL   +N    ++P  +   L +  +
Sbjct: 100 TFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN--L 155

Query: 215 EVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG 273
             LFL  N ++         L          NR+    P +   L ++  L L  N L  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 274 QVPEVLCALDNLVNLSLSNN 293
              E L  L  L  L L++N
Sbjct: 216 LPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
                + +  N+ S     +     +L+ L +  N     +    F  +  L+ L L++N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 174 NFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRSI-GKLSSTLIEVLFL-NNLLTGCLPY 229
             ++ +          L  L          +   +   L++  ++ L+L +N L      
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA--LQYLYLQDNALQALPDD 147

Query: 230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS 289
               L          NR++     +   L  ++RL L  N +    P     L  L+ L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 290 LSNNYFTGVGP-LCRKLIKNGVLDVNRN 316
           L  N  + +       L     L +N N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 39/272 (14%), Positives = 66/272 (24%), Gaps = 11/272 (4%)

Query: 69  LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF 128
              +D          L   +  L    +    +       +  L  L +      S    
Sbjct: 158 FRQLDLLPVAHL--HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN 214

Query: 129 SGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNF----MQKLPQNLG 184
                +  L  +++   D         +       TL  + L +         KL Q   
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 185 STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNL----LTGCLPYELGFLREARVF 240
             P  YL   N   T  I R     S T ++ L + ++                 E  + 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300
             S +                  LN + N+    V +    L  L  L L  N       
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 301 LCRKLIKNGVLDVNRNCIHYLPDQRSTHECAL 332
           +         L+     ++ L        CA 
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 15/244 (6%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG-----TFPVAILGKNDLSFL 145
           L +++L H  +         +      +  L+I N   +       F  +      L   
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFTGS 201
            ++   F       ++     +++  L+ ++    +      +P+   +L F  N FT S
Sbjct: 311 HVKNQVFL-FSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 202 IPRSIGKLSSTLIEVLFLNNLLT-GCLPYELGFLREARVFDASNNRLT-GPLPCSLGCLE 259
           + +    L      +L  N L     +      +      D S N L       +    E
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428

Query: 260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIH 319
            I  LNLS N+L G V   L     +  L L NN    +      L     L+V  N + 
Sbjct: 429 SILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486

Query: 320 YLPD 323
            +PD
Sbjct: 487 SVPD 490

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 21/217 (9%)

Query: 91  LPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTF--PVAILGKNDLSFLDI 147
              L     + N+ +  +       L  +  +++  N    +     A  G   LS++ I
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQN-LGSTPAL-YLTFANNKFTGSIPRS 205
                T ++P  +   +L  L L+ N    K+    L     L  L  + N  +     S
Sbjct: 179 ADTNIT-TIPQGLP-PSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 206 IGKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTG------PLPCSLGCL 258
           +       +  L L NN L   +P  L   +  +V    NN ++         P      
Sbjct: 236 LANTPH--LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 259 EKIERLNLSGN-LLYGQVPE-VLCALDNLVNLSLSNN 293
                ++L  N + Y ++       +     + L N 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLN 171
              L  L+ L + NNK S   P A      L  L +  N     +P ++  +TL  L ++
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVH 129

Query: 172 NNNFMQKLP----QNLGSTPALYLTFANNKFTGSI--PRSIGKLSSTLIEVLFL-NNLLT 224
            N    K+       L     + L    N    S     +   +    +  + + +  +T
Sbjct: 130 ENEI-TKVRKSVFNGLNQMIVVEL--GTNPLKSSGIENGAFQGMKK--LSYIRIADTNIT 184

Query: 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284
             +P   G            N++T     SL  L  + +L LS N +       L    +
Sbjct: 185 T-IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 285 LVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
           L  L L+NN    V           V+ ++ N I  +  
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
           L  L   + + N+    +  K+     L EL +  N+ +        G N +  +++  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 151 FFT-GSVPPQVF--MQTLDVLFLNNNNFMQKLPQNL-GSTPALYLTFANNKFTGSIPRSI 206
                 +    F  M+ L  + + + N    +PQ L  S   L+L    NK T     S+
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHL--DGNKITKVDAASL 212

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
             L++  +  L L  N ++      L      R    +NN+L   +P  L   + I+ + 
Sbjct: 213 KGLNN--LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY 269

Query: 266 LSGNLLYG------QVPEVLCALDNLVNLSLSNNY 294
           L  N +          P       +   +SL +N 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNN 173
           P    LD+ NNK +           +L  L +  N  +  + P  F  +  L+ L+L+ N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 174 NFMQ---KLPQNLGSTPALYLTFANNKFTGSIPRSI-GKLSSTLIEVLFL--NNLLTGCL 227
              +   K+P+ L     L +    N+ T  + +S+   L+   + V+ L  N L +  +
Sbjct: 111 QLKELPEKMPKTLQE---LRV--HENEIT-KVRKSVFNGLNQ--MIVVELGTNPLKSSGI 162

Query: 228 PYELGF--LREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL 285
                F  +++      ++  +T  +P   G    +  L+L GN +       L  L+NL
Sbjct: 163 ENGA-FQGMKKLSYIRIADTNITT-IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 286 VNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPD 323
             L LS N  + V             L +N N +  +P 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 40/222 (18%), Positives = 69/222 (31%), Gaps = 40/222 (18%)

Query: 108 ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV 167
           + P    L    + ++     +       L  + +   +   +    S+    F   L  
Sbjct: 12  VFP-DPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQ-SLAGMQFFTNLKE 67

Query: 168 LFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226
           L L++N  +  L   L     L  L+   N+       ++  + S  +  LFL       
Sbjct: 68  LHLSHNQ-ISDLS-PLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFL------- 113

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286
                            NN L       L  L+ +E L++  N L  +   +L  L  L 
Sbjct: 114 ----------------DNNELRDTDS--LIHLKNLEILSIRNNKL--KSIVMLGFLSKLE 153

Query: 287 NLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTH 328
            L L  N  T  G L  +L K   +D+        P +    
Sbjct: 154 VLDLHGNEITNTGGL-TRLKKVNWIDLTGQKCVNEPVKYQPE 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 42/261 (16%), Positives = 82/261 (31%), Gaps = 40/261 (15%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLA--QLPYLYELDISNNKFS----GTFPVAILG 138
             F   L  L +     N     I P      +   + LD++ NK               
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQ 178

Query: 139 KNDLSFLDIRFN-------FFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQ------NL 183
               + L +          ++ G           ++  L L+ N F + + +        
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243
               +L L+ + N  +     +     +   + L  + +               +  D S
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV---------------KTCDLS 283

Query: 244 NNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC 302
            +++   L         +E+L L+ N +          L +L+ L+LS N+   +   + 
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 303 RKLIKNGVLDVNRNCIHYLPD 323
             L K  VLD++ N I  L D
Sbjct: 344 ENLDKLEVLDLSYNHIRALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 12/205 (5%)

Query: 91  LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
           L  ++L   N             +   +  LD+S N F  +          ++   I+  
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA--IAGTKIQSL 244

Query: 151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI-GKL 209
             + S          +    +N  F       L ++       + +K   ++ +S+    
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFK-----GLEASGVKTCDLSKSKIF-ALLKSVFSHF 298

Query: 210 SSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSG 268
           +    E L L  N +          L      + S N L          L+K+E L+LS 
Sbjct: 299 TDL--EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 269 NLLYGQVPEVLCALDNLVNLSLSNN 293
           N +     +    L NL  L+L  N
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 39/239 (16%), Positives = 68/239 (28%), Gaps = 44/239 (18%)

Query: 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQT--LDVLFLNNNNFMQ 177
            +D+S N  +     +     DL FL +        +    F     L +L L+ N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-L 92

Query: 178 KLPQN-LGSTPAL-YLTFANNKFTGS-IPRSI-GKLSSTLIEVLFL-NNLLTGCLPYELG 232
           +L          L  LT       G+ +  +    L+S  +E+L L +N +    P    
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS--LEMLVLRDNNIKKIQP---- 146

Query: 233 FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN--------LLYGQVPEVLCALDN 284
               A  F                 + +   L+L+ N         L     +    L  
Sbjct: 147 ----ASFFLN---------------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 285 LVN--LSLSNNYFTGVGPLC-RKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFC 340
                  ++  +          K      LD++ N       +R     A   +Q    
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 8/158 (5%)

Query: 162 MQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLN 220
           M +L  + L N N    L   +     +  LT  N   T   P  I  LS+ L  +  + 
Sbjct: 43  MNSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSN-LERLRIMG 97

Query: 221 NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280
             +T      L  L    + D S++     +   +  L K+  ++LS N     +   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK 156

Query: 281 ALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
            L  L +L++  +       +     K   L      I
Sbjct: 157 TLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 87  FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
            I  L +L          +    P L+ L  L  LDIS++    +    I     ++ +D
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNN 174
           + +N     + P   +  L  L +  + 
Sbjct: 143 LSYNGAITDIMPLKTLPELKSLNIQFDG 170

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 33/241 (13%), Positives = 70/241 (29%), Gaps = 25/241 (10%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           +     L+    + NK +  +   ++Q   L  L+   N  +    +    +  L+FLD 
Sbjct: 166 VTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLNQNIQ--LTFLDC 219

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N  T  +        L     + N    +L   + +   L  L          I   +
Sbjct: 220 SSNKLT-EIDVTPL-TQLTYFDCSVNPL-TELD--VSTLSKLTTLHCIQTDLL-EID--L 271

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
              +  +         +      ++    +  + D     +T      L    K+  L L
Sbjct: 272 THNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYL 325

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRS 326
           +   L  ++   +     L +LS  N +      +  K+               +P +  
Sbjct: 326 NNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVG-KIPALNNNFEAEGQTITMPKETL 381

Query: 327 T 327
           T
Sbjct: 382 T 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 25/234 (10%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
           ++Q   L+    +SNK +  I   +  L  L   D S N  +    V+ L K  L+ L  
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSK--LTTLHC 261

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
                   +      Q L          +++L  ++     L  L       T  +   +
Sbjct: 262 IQTDLL-EIDLTHNTQ-LIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--L 314

Query: 207 GKLSSTLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
            +     +  L+L N  LT  L   +    + +     N  +      S+G +  +    
Sbjct: 315 SQNPK--LVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNF 367

Query: 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG-PLCRKLIKNGVLDVNRNCI 318
            +         E L   +N + +++S +     G P+  +    GV D   N I
Sbjct: 368 EAEGQTITMPKETL--TNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 52/266 (19%), Positives = 88/266 (33%), Gaps = 39/266 (14%)

Query: 79  LAAPTLDGFIDQLPD--LSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI 136
           L A     F D  PD   +   A + +   T +    QL  L  LD  N+  +    +  
Sbjct: 3   LKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK 62

Query: 137 LGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNF----MQKLPQ----------- 181
           L    L+ L    N  T ++        L  L  ++N      +  L +           
Sbjct: 63  LTG--LTKLICTSNNIT-TLDLSQ-NTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL 118

Query: 182 ---NLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREA 237
              ++   P L YL  A N  T  I   +   +        LN  +T     ++    + 
Sbjct: 119 TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT---KLDVTPQTQL 172

Query: 238 RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
              D S N++T      +   + + RLN   N +  ++   L     L  L  S+N  T 
Sbjct: 173 TTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE 226

Query: 298 VGPLCRKLIKNGVLDVNRNCIHYLPD 323
           +  +   L +    D + N +  L  
Sbjct: 227 I-DV-TPLTQLTYFDCSVNPLTELDV 250

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 43/280 (15%), Positives = 80/280 (28%), Gaps = 26/280 (9%)

Query: 100 NSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPV-AILGKNDLSFLDI-RFNFFTGSV 156
              K    I     +    L +++IS N                L  + I + N     +
Sbjct: 38  VLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YI 95

Query: 157 PPQVFMQT--LDVLFLNNNNFMQKLPQN--LGSTPALYLTFANNKFTGSIP-RSIGKLSS 211
            P+ F     L  L ++N    + LP    + S   + L   +N    +I   S   LS 
Sbjct: 96  NPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 212 TLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271
             + +    N +           +   +  + NN L                L++S   +
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 272 YGQVPEVLCALDNLVNL-SLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHEC 330
              +P     L+NL  L + S      +  L  KL+      +              H C
Sbjct: 215 -HSLPS--YGLENLKKLRARSTYNLKKLPTL-EKLVALMEASLTYPS----------HCC 260

Query: 331 ALFFLQPRFCFYPSWYNFIPCSKVSPWSHPHSPSRTNSSS 370
           A    + +        N     +   +       R++ + 
Sbjct: 261 AFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAE 300

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 39/208 (18%), Positives = 57/208 (27%), Gaps = 28/208 (13%)

Query: 89  DQLPDL-SLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146
             LP L  +    +N     I+P+    LP L  L ISN        V  +       LD
Sbjct: 76  SNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI 206
           I+ N    ++    F                 L         + L    N     I  S 
Sbjct: 135 IQDNINIHTIERNSF---------------VGLSFES-----VILWLNKNGIQ-EIHNSA 173

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266
              +      L  NN L               + D S  R+       L  L+K+   + 
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 267 SGNLLYGQVPEVLCALDNLVNLSLSNNY 294
                  +    L  L  L+  SL+   
Sbjct: 234 YNL----KKLPTLEKLVALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 19/212 (8%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
            ++L  +    AN++    ++   +  LP + +L ++ NK +   P+A L    L +L +
Sbjct: 42  QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKN--LGWLFL 97

Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
             N     +     ++ L  L L +N         L   P L  L   NNK T      I
Sbjct: 98  DENKVK-DLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT-----DI 149

Query: 207 GKLSS-TLIEVLFL-NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
             LS  T ++ L L +N ++  +P  L  L + +    S N ++      L  L+ ++ L
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT 296
            L       +       L     +  ++    
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 39/217 (17%)

Query: 108 ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV 167
           I           + ++     +       L    +  +    +    SV    ++  +  
Sbjct: 17  IFS-DDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQGIQYLPNVTK 72

Query: 168 LFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226
           LFLN N  +  +   L +   L +L    NK        +  L         L  L    
Sbjct: 73  LFLNGNK-LTDIK-PLANLKNLGWLFLDENKVK-----DLSSLKD-------LKKL---- 114

Query: 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286
                      +     +N ++      L  L ++E L L  N +      VL  L  L 
Sbjct: 115 -----------KSLSLEHNGIS--DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLD 159

Query: 287 NLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323
            LSL +N  + + PL   L K   L +++N I  L  
Sbjct: 160 TLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRA 195

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG-QVPEVLCALDNLVNLS 289
           L  L + +  + S+NR++G L         +  LNLSGN +      E L  L+NL +L 
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119

Query: 290 LSNN 293
           L N 
Sbjct: 120 LFNC 123

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 48/246 (19%)

Query: 108 ISPKLAQLPYLYELDISNNKFSGTFPVAI---LGKN-DLSFLDIRFNFFTGSVPPQVF-- 161
           +   L +   + E+ +S N         +   +    DL   +     FTG V  ++   
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEA 82

Query: 162 ----------MQTLDVLFLNNNNF----MQKLPQNLGSTPAL-YLTFANNKFTGSIPRSI 206
                        L  + L++N F     + L   L     L +L   NN      P++ 
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAG 139

Query: 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIE 262
            K++  L E+              L      R      NRL          +      + 
Sbjct: 140 AKIARALQELAVNKKAKNAP---PL------RSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 263 RLNLSGNLLYGQ-----VPEVLCALDNLVNLSLSNNYFT--GVGPLCRKLIKNG---VLD 312
            + +  N +  +     + E L     L  L L +N FT  G   L   L        L 
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250

Query: 313 VNRNCI 318
           +N   +
Sbjct: 251 LNDCLL 256

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL--YGQVPEVLCALDNLVNL 288
           L  L + +  + S NR+ G L      L  +  LNLSGN L     + E L  L+ L +L
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSL 125

Query: 289 SLSNN 293
            L N 
Sbjct: 126 DLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 23/121 (19%)

Query: 191 LTFANNKFTGSIPRSIGKLSSTL--IEVLFL-NNLLT--GCLPYELGFLREARVFDASNN 245
           L     K        I  L +TL   + +   +N +      P     LR  +    +NN
Sbjct: 24  LDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNNN 74

Query: 246 RLTGPLPCSLGCLEKIERLNLSGNLL--YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303
           R+          L  +  L L+ N L   G + + L +L +L  L +  N      P+  
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN------PVTN 127

Query: 304 K 304
           K
Sbjct: 128 K 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPK-LAQLPYLYELDISNNKFSGTFPVAILGKN-DL 142
           +    +L +L     + N  +  IS +    +P L  LD+S+N    T    +      L
Sbjct: 57  EWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQAL 114

Query: 143 SFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLP----QNLGSTPAL-YLTFAN 195
             L +  N     V    F  M  L  L+L+ N  + + P    ++    P L  L  ++
Sbjct: 115 EVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 196 NKFTGSIPRSIGKLSSTLIEVLFLNN 221
           NK        + KL + +   L+L+N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 47/191 (24%), Positives = 72/191 (37%), Gaps = 33/191 (17%)

Query: 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ 177
           +LD+ +NK S     A      L  L +  N    ++P  +F  ++ L+ L++ +N   Q
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-Q 98

Query: 178 KLP----QNLGSTPALYLTFANNKFTGSIPRSI-GKLSSTLIEVLFL-NNLLTGCLPYEL 231
            LP      L +   L L    N+   S+P  +   L  T +  L L  N L   LP   
Sbjct: 99  ALPIGVFDQLVNLAELRLD--RNQLK-SLPPRVFDSL--TKLTYLSLGYNELQ-SLP--- 149

Query: 232 GFLREARVFDA---------SNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL 282
                  VFD           NN+L      +   L +++ L L  N L         +L
Sbjct: 150 -----KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 283 DNLVNLSLSNN 293
           + L  L L  N
Sbjct: 205 EKLKMLQLQEN 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.96
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.51
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.41

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.8e-43  Score=328.76  Aligned_cols=291  Identities=25%  Similarity=0.421  Sum_probs=240.8

Q ss_pred             hHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCC--cCceeeCCCCCCCcccceeEEEcCCCCCCCC-CCccccCCCCCC
Q 048561           19 LAAIYPIIQTFKNTITSDPFNITSTWI-GSDICK--YKGFYCGHPPDNLTAIALASIDFNGFELAAP-TLDGFIDQLPDL   94 (382)
Q Consensus        19 ~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~--w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~-~~~~~~~~l~~L   94 (382)
                      .+.|++||++||+++. ||. .+++|. +.|+|.  |.||.|+...   ...+|+.|+++++++.+. .++..|+++++|
T Consensus         4 ~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            4 NPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            4457789999999996 665 788997 457898  9999997532   123799999999999871 245679999999


Q ss_pred             CEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561           95 SLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus        95 ~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      ++|++++ |.+.+.+|..++++++|++|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+. +++|++|++++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  158 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence            9999995 999999999999999999999999999999999999999999999999999988988776 89999999999


Q ss_pred             CcCCCcCCcCCCC-C-cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561          173 NNFMQKLPQNLGS-T-PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP  250 (382)
Q Consensus       173 n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  250 (382)
                      |.+++.+|..+.. . .|++|++++|.+++.+|..+..+ . |+.|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus       159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            9999888988877 4 78899999999988888888776 3 77788888887777777777788888888888887755


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCC
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNC  317 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~  317 (382)
                      ++. +..+++|++|++++|.+++.+|.++..+++|++|+|++|++++.+|....+++|+.+++++|+
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            554 667777888888888887777777777778888888888887766665666777766666665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.7e-39  Score=334.70  Aligned_cols=299  Identities=26%  Similarity=0.353  Sum_probs=217.6

Q ss_pred             cchhhhhHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCC---CC----
Q 048561           13 TFLDQRLAAIYPIIQTFKNTITSDPFNITSTWI-GSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAP---TL----   84 (382)
Q Consensus        13 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~---~~----   84 (382)
                      |.+.+..+.|++||++||+++. ||. .+++|. +.|+|.|.||.|+.       .+|+.|+|+++.+.+.   +.    
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~   74 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLL   74 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTT
T ss_pred             CccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHh
Confidence            4455667789999999999998 787 899996 66899999999972       2688888888887762   11    


Q ss_pred             ------------------ccccCCCCCCCEEEcCCCcCcccCCc--ccCCCCCCCEEEeecCCCCccCcccc-cCCCCCc
Q 048561           85 ------------------DGFIDQLPDLSLFHANSNKFSGTISP--KLAQLPYLYELDISNNKFSGTFPVAI-LGKNDLS  143 (382)
Q Consensus        85 ------------------~~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~  143 (382)
                                        +..|+++++|++|++++|.+++.+|.  .++++++|++|+|++|.+++.+|..+ .++++|+
T Consensus        75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  154 (768)
T 3rgz_A           75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE  154 (768)
T ss_dssp             TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred             ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence                              14577888888888888888887877  78888888888888888877776655 5677777


Q ss_pred             EEEecCCCCCCCCCcc--------------------------cccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCc
Q 048561          144 FLDIRFNFFTGSVPPQ--------------------------VFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANN  196 (382)
Q Consensus       144 ~L~Ls~n~l~~~~p~~--------------------------~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n  196 (382)
                      +|++++|.+++..+..                          ..+++|++|++++|.+++.+|. ++. .+|++|++++|
T Consensus       155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            7777777766544432                          1245566666666666665555 444 66777777777


Q ss_pred             ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCC-CCCCEEeCcCCcCcccC
Q 048561          197 KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCL-EKIERLNLSGNLLYGQV  275 (382)
Q Consensus       197 ~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~  275 (382)
                      .+++.+|..+..+ ++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+
T Consensus       234 ~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~  310 (768)
T 3rgz_A          234 KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV  310 (768)
T ss_dssp             CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred             cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence            7776666666665 66777777777766655543  66677777777777776777777664 78888888888888888


Q ss_pred             chhhcCCCCCCEEEcccccCcccCC-c-ccCCCCCCEEEccCCCCC-CCCCc
Q 048561          276 PEVLCALDNLVNLSLSNNYFTGVGP-L-CRKLIKNGVLDVNRNCIH-YLPDQ  324 (382)
Q Consensus       276 p~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~L~~N~l~-~lp~~  324 (382)
                      |..+..+++|++|++++|++++..+ . +..+++|++|++++|.++ .+|+.
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~  362 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES  362 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence            8888888888888888888886544 3 677888888888888877 45653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-38  Score=323.76  Aligned_cols=293  Identities=17%  Similarity=0.262  Sum_probs=216.9

Q ss_pred             hhHHHHHHHHHHHHhCcCCCCCC-------CCCCC-CCCCCCc---CceeeCCCCCCCcccceeEEEcCCCCCCCCCCcc
Q 048561           18 RLAAIYPIIQTFKNTITSDPFNI-------TSTWI-GSDICKY---KGFYCGHPPDNLTAIALASIDFNGFELAAPTLDG   86 (382)
Q Consensus        18 ~~~~~~~aL~~~k~~~~~~~~~~-------~~~W~-~~~~C~w---~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~   86 (382)
                      ....|++||.++|+++.++.+..       .++|. +.++|.|   .||.|+..      .+|+.|+|+++++.| .++.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g-~lp~   99 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASG-RVPD   99 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEE-EECG
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCC-cCCh
Confidence            44569999999999998665543       34897 5678999   99999764      379999999999988 4667


Q ss_pred             ccCCCCCCCEEEcCCCc---------------------------------------------------------------
Q 048561           87 FIDQLPDLSLFHANSNK---------------------------------------------------------------  103 (382)
Q Consensus        87 ~~~~l~~L~~L~l~~n~---------------------------------------------------------------  103 (382)
                      .++++++|++|++++|.                                                               
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  179 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS  179 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence            89999999999998883                                                               


Q ss_pred             ---------------CcccCCcccCCCCCCCEEEeecCCCCcc-----------------Cccccc--CCCCCcEEEecC
Q 048561          104 ---------------FSGTISPKLAQLPYLYELDISNNKFSGT-----------------FPVAIL--GKNDLSFLDIRF  149 (382)
Q Consensus       104 ---------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~  149 (382)
                                     +++ +|..++++++|++|+|++|.+++.                 +|..++  ++++|++|++++
T Consensus       180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~  258 (636)
T 4eco_A          180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN  258 (636)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred             ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence                           344 788889999999999999999875                 888888  899999999999


Q ss_pred             CCCCCCCCcccc-cCCCCEEeCCCCc-CCC-cCCcCCCC-------CcchhhhccCcccccccch--hHHHhhhhHHHHH
Q 048561          150 NFFTGSVPPQVF-MQTLDVLFLNNNN-FMQ-KLPQNLGS-------TPALYLTFANNKFTGSIPR--SIGKLSSTLIEVL  217 (382)
Q Consensus       150 n~l~~~~p~~~~-l~~L~~L~L~~n~-l~~-~~p~~~~~-------~~L~~L~l~~n~l~~~lp~--~l~~l~~~L~~L~  217 (382)
                      |.+.+.+|..+. +++|++|++++|. +++ .+|..++.       .+|++|++++|.++ .+|.  .+.++ ++|+.|+
T Consensus       259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~  336 (636)
T 4eco_A          259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLE  336 (636)
T ss_dssp             CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEE
T ss_pred             CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEe
Confidence            999888888776 8899999999998 877 77776654       57888888888888 7777  77776 6788888


Q ss_pred             hhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCC-CCEEeCcCCcCcccCchhhcCCC--CCCEEEccccc
Q 048561          218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEK-IERLNLSGNLLYGQVPEVLCALD--NLVNLSLSNNY  294 (382)
Q Consensus       218 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~  294 (382)
                      +++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....  +|++|++++|.
T Consensus       337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence            88888876677 6666666666666666666 55666666666 666666666666 5555544433  55555555555


Q ss_pred             CcccCC-ccc-------CCCCCCEEEccCCCCCCCCC
Q 048561          295 FTGVGP-LCR-------KLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       295 l~~~~~-~~~-------~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +++..| .+.       .+++|+.|++++|.|+.+|.
T Consensus       414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             CCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            555332 233       34445555555555554443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7e-37  Score=318.35  Aligned_cols=280  Identities=27%  Similarity=0.415  Sum_probs=205.8

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|++++|.+.+ .++..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus       395 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          395 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            45566666666555 34455666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      ++|.+++.+|..+. +++|++|++++|.+++.+|..++. .+|++|++++|.+++.+|..+..+ ++|+.|++++|.+++
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEES
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCC
Confidence            66666666665554 566666666666666666666555 556666666666666666666665 566666666666655


Q ss_pred             CCch----------------------------------------------------------------------hcccCc
Q 048561          226 CLPY----------------------------------------------------------------------ELGFLR  235 (382)
Q Consensus       226 ~~~~----------------------------------------------------------------------~~~~l~  235 (382)
                      .+|.                                                                      .+..++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            5443                                                                      344567


Q ss_pred             CCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561          236 EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN  314 (382)
Q Consensus       236 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~  314 (382)
                      +|++|++++|++++.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+| .+..++.|++|+|+
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            89999999999999999999999999999999999999999999999999999999999998665 78999999999999


Q ss_pred             CCCCCC-CCC--cccccchhhhccCCCCCCCCCCcCccCCCC
Q 048561          315 RNCIHY-LPD--QRSTHECALFFLQPRFCFYPSWYNFIPCSK  353 (382)
Q Consensus       315 ~N~l~~-lp~--~~~~~~~~~~~~np~~c~~~~~~~~~~c~~  353 (382)
                      +|++++ +|+  ++..+....+.|||.+|+.+.    ..|..
T Consensus       713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~~  750 (768)
T 3rgz_A          713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL----PRCDP  750 (768)
T ss_dssp             SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS----CCCCS
T ss_pred             CCcccccCCCchhhccCCHHHhcCCchhcCCCC----cCCCC
Confidence            999998 665  344556678899999999763    26874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8e-37  Score=318.37  Aligned_cols=288  Identities=17%  Similarity=0.230  Sum_probs=238.6

Q ss_pred             hhhHHHHHHHHHHHHhCcCCCCCCCCCCC------CCCC--CCc------------CceeeCCCCCCCcccceeEEEcCC
Q 048561           17 QRLAAIYPIIQTFKNTITSDPFNITSTWI------GSDI--CKY------------KGFYCGHPPDNLTAIALASIDFNG   76 (382)
Q Consensus        17 ~~~~~~~~aL~~~k~~~~~~~~~~~~~W~------~~~~--C~w------------~gv~c~~~~~~~~~~~l~~L~L~~   76 (382)
                      .....|+.||++||+++. +|     +|.      ..++  |.|            .||.|+..      .+|+.|+|++
T Consensus       265 ~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~  332 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG  332 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTT
T ss_pred             ccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECcc
Confidence            345678999999999996 44     554      2356  999            99999863      3799999999


Q ss_pred             CCCCCCCCccccCCCCCCCEEEc-CCCcCccc------------------------------------------------
Q 048561           77 FELAAPTLDGFIDQLPDLSLFHA-NSNKFSGT------------------------------------------------  107 (382)
Q Consensus        77 ~~l~~~~~~~~~~~l~~L~~L~l-~~n~l~~~------------------------------------------------  107 (382)
                      +++.| .++..++++++|++|+| ++|.+.|.                                                
T Consensus       333 ~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          333 FGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             TCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             CCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence            99999 56788999999999999 76654333                                                


Q ss_pred             ----------------------------CCcccCCCCCCCEEEeecCCCCc-----------------cCccccc--CCC
Q 048561          108 ----------------------------ISPKLAQLPYLYELDISNNKFSG-----------------TFPVAIL--GKN  140 (382)
Q Consensus       108 ----------------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~  140 (382)
                                                  +|..++++++|++|+|++|.+++                 .+|..++  +++
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence                                        78889999999999999999997                 3899988  999


Q ss_pred             CCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCc-CCC-cCCcCCCC--------CcchhhhccCcccccccch--hHH
Q 048561          141 DLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNN-FMQ-KLPQNLGS--------TPALYLTFANNKFTGSIPR--SIG  207 (382)
Q Consensus       141 ~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~-l~~-~~p~~~~~--------~~L~~L~l~~n~l~~~lp~--~l~  207 (382)
                      +|++|+|++|.+.+.+|..+. +++|++|++++|. +++ .+|..++.        .+|++|++++|.++ .+|.  .+.
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~  570 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ  570 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence            999999999999999998777 8999999999998 887 77876554        37999999999999 8998  888


Q ss_pred             HhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCC-CCEEeCcCCcCcccCchhhcCCCC--
Q 048561          208 KLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEK-IERLNLSGNLLYGQVPEVLCALDN--  284 (382)
Q Consensus       208 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--  284 (382)
                      ++ ++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+..  
T Consensus       571 ~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~  645 (876)
T 4ecn_A          571 KM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV  645 (876)
T ss_dssp             TC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred             cC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence            87 78999999999998 777 8899999999999999999 78888888888 999999999998 77877766543  


Q ss_pred             CCEEEcccccCcccCCccc------CCCCCCEEEccCCCCCCCCC
Q 048561          285 LVNLSLSNNYFTGVGPLCR------KLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       285 L~~L~L~~N~l~~~~~~~~------~l~~L~~L~L~~N~l~~lp~  323 (382)
                      |+.|+|++|++++.++.+.      .+++|+.|+|++|.|+.+|.
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~  690 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT  690 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence            8888888888877544322      33356666666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4e-34  Score=279.92  Aligned_cols=254  Identities=19%  Similarity=0.199  Sum_probs=173.3

Q ss_pred             cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCccc--ccCCCCCcEEEecCCCCCCCCCcc-cc-cC
Q 048561           88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA--ILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQ  163 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~  163 (382)
                      |.++++|++|++++|.+++..|..|+++++|++|+|++|.+++.++..  +..+++|++|++++|.+++..|.. +. ++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            444444444444444444444444444444444444444444333322  444555555555555555333433 22 55


Q ss_pred             CCCEEeCCCCcCCCcCCcCCCC-----------------------------------CcchhhhccCcccccccchhHHH
Q 048561          164 TLDVLFLNNNNFMQKLPQNLGS-----------------------------------TPALYLTFANNKFTGSIPRSIGK  208 (382)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~-----------------------------------~~L~~L~l~~n~l~~~lp~~l~~  208 (382)
                      +|++|++++|.+++..+..+..                                   .+|++|++++|.+.+..|..+..
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            5555555555555444433321                                   24555666666655555544433


Q ss_pred             hh--------------------------------------hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561          209 LS--------------------------------------STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP  250 (382)
Q Consensus       209 l~--------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  250 (382)
                      ..                                      .+|+.|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            20                                      2566777777777777888899999999999999999988


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc----
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR----  325 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~----  325 (382)
                      .+..|..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+ .+..+++|+.|+|++|+|+++|+..    
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            88899999999999999999998888999999999999999999999755 6889999999999999999988632    


Q ss_pred             cccchhhhccCCCCCC
Q 048561          326 STHECALFFLQPRFCF  341 (382)
Q Consensus       326 ~~~~~~~~~~np~~c~  341 (382)
                      ..+..+.+.+|++.|.
T Consensus       395 ~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTCCEEECCSSCBCCC
T ss_pred             CcccEEEccCCCcccC
Confidence            3566778889999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=5.6e-36  Score=281.16  Aligned_cols=276  Identities=19%  Similarity=0.199  Sum_probs=215.0

Q ss_pred             hhHHHHHHHHHHHHhCcCCCCCCCCCCC-----CCCCCCcCceeeCCCCCC---CcccceeEEEcCCCCCCCCCCccccC
Q 048561           18 RLAAIYPIIQTFKNTITSDPFNITSTWI-----GSDICKYKGFYCGHPPDN---LTAIALASIDFNGFELAAPTLDGFID   89 (382)
Q Consensus        18 ~~~~~~~aL~~~k~~~~~~~~~~~~~W~-----~~~~C~w~gv~c~~~~~~---~~~~~l~~L~L~~~~l~~~~~~~~~~   89 (382)
                      ..+.++.||++||+++..|++++...|.     ..+.|.|.|+.|......   .....++.|++++|++..  ++..+.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~--lp~~l~  101 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAF  101 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS--CCSCGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh--cChhhh
Confidence            4456778999999999889998889993     456899999999531110   012368888888888884  455577


Q ss_pred             CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--------
Q 048561           90 QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--------  161 (382)
Q Consensus        90 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--------  161 (382)
                      ++++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+.        
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            7888888888888888 78888888888888888888888 7788888888888888888887777777553        


Q ss_pred             --cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCc
Q 048561          162 --MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARV  239 (382)
Q Consensus       162 --l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  239 (382)
                        +++|++|++++|.+                       + .+|..+..+ ++|+.|++++|.+++ +|..+..+++|++
T Consensus       180 ~~l~~L~~L~L~~n~l-----------------------~-~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~  233 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGI-----------------------R-SLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEE  233 (328)
T ss_dssp             EESTTCCEEEEEEECC-----------------------C-CCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred             ccCCCCCEEECcCCCc-----------------------C-cchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence              45555555555554                       4 445555554 566666666676664 4556788889999


Q ss_pred             cccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCC
Q 048561          240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCI  318 (382)
Q Consensus       240 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l  318 (382)
                      |++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+..| .+..+++|+.+++..|.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            9999999988999999999999999999998888999999999999999999998887544 789999999999998888


Q ss_pred             CCCCC
Q 048561          319 HYLPD  323 (382)
Q Consensus       319 ~~lp~  323 (382)
                      ..++.
T Consensus       314 ~~l~~  318 (328)
T 4fcg_A          314 AQLDQ  318 (328)
T ss_dssp             CC---
T ss_pred             HHHhh
Confidence            87664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.3e-34  Score=264.62  Aligned_cols=250  Identities=26%  Similarity=0.349  Sum_probs=228.1

Q ss_pred             CCCCEEEcCCCcCcc--cCCcccCCCCCCCEEEeec-CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCE
Q 048561           92 PDLSLFHANSNKFSG--TISPKLAQLPYLYELDISN-NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDV  167 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~  167 (382)
                      .+++.|++++|.+++  .+|..++++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+. +++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999998  8999999999999999995 999999999999999999999999999988998776 899999


Q ss_pred             EeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561          168 LFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR  246 (382)
Q Consensus       168 L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  246 (382)
                      |++++|.+++.+|..+.. .+|++|++++|.+++.+|..++.+.+.|+.|++++|.+.+..|..+..+. |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999999999988877 88999999999999999999998844899999999999999999999997 9999999999


Q ss_pred             CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CCCc
Q 048561          247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LPDQ  324 (382)
Q Consensus       247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~  324 (382)
                      +++..+..+..+++|+.|++++|.+++.++. +..+++|++|+|++|+|++..+ .+..+++|+.|+|++|+|++ +|+.
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9988999999999999999999999976665 7889999999999999997555 68999999999999999995 6653


Q ss_pred             --ccccchhhhccCCCCCCCC
Q 048561          325 --RSTHECALFFLQPRFCFYP  343 (382)
Q Consensus       325 --~~~~~~~~~~~np~~c~~~  343 (382)
                        ...+....+.+|++.|+.+
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccccChHHhcCCCCccCCC
Confidence              3456677888999999854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=5.2e-32  Score=266.71  Aligned_cols=289  Identities=19%  Similarity=0.151  Sum_probs=233.9

Q ss_pred             CcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC
Q 048561           51 KYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN  126 (382)
Q Consensus        51 ~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n  126 (382)
                      .|..+.|....-.    .....++.|++++|++.+ +.+..|.++++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4667888653211    113478999999999998 56678999999999999999999888999999999999999999


Q ss_pred             CCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccch
Q 048561          127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPR  204 (382)
Q Consensus       127 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~  204 (382)
                      .+++..+..|.++++|++|+|++|.+.+..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            99955556688999999999999999966666665 899999999999999888888877 8899999999999855445


Q ss_pred             hHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccC------------------------CccCCCCCCcCCCCCCC
Q 048561          205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS------------------------NNRLTGPLPCSLGCLEK  260 (382)
Q Consensus       205 ~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls------------------------~n~l~~~~p~~~~~l~~  260 (382)
                      .+..+ ++|+.|++++|.+.+..+..+..+++|+.|+++                        +|.+++..+..+..+++
T Consensus       171 ~l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          171 ALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             Hhccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            56666 788889998888877666666666655555554                        45555333345677888


Q ss_pred             CCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc----cccchhhhcc
Q 048561          261 IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFL  335 (382)
Q Consensus       261 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~  335 (382)
                      |+.|++++|.+++..+..+..+++|+.|+|++|+++++.+ .+..+++|+.|+|++|.|+++|+..    ..+..+.+.+
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            9999999999987777788888999999999999998755 6889999999999999999988642    3556677889


Q ss_pred             CCCCCC
Q 048561          336 QPRFCF  341 (382)
Q Consensus       336 np~~c~  341 (382)
                      ||+.|.
T Consensus       330 N~l~c~  335 (477)
T 2id5_A          330 NPLACD  335 (477)
T ss_dssp             SCEECS
T ss_pred             CCccCc
Confidence            999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.6e-32  Score=275.27  Aligned_cols=301  Identities=18%  Similarity=0.122  Sum_probs=205.9

Q ss_pred             CCCCCCCCCCCCCCC-----CcCceeeCCC-----------CCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEc
Q 048561           36 DPFNITSTWIGSDIC-----KYKGFYCGHP-----------PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHA   99 (382)
Q Consensus        36 ~~~~~~~~W~~~~~C-----~w~gv~c~~~-----------~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l   99 (382)
                      +....+++|.....|     .|.++.|...           ........++.++++++.+.. +++..|.++++|++|++
T Consensus         4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L   82 (597)
T 3oja_B            4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNL   82 (597)
T ss_dssp             -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE-ECTHHHHHCCCCSEEEC
T ss_pred             cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC-cCHHHHccCCCCcEEEC
Confidence            344556788755433     2665555421           011223466778888887776 45556777888888888


Q ss_pred             CCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCC
Q 048561          100 NSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQ  177 (382)
Q Consensus       100 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~  177 (382)
                      ++|.+++..+..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+|... . +++|++|++++|.+++
T Consensus        83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~  161 (597)
T 3oja_B           83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER  161 (597)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence            888888777778888888888888888888766777788888888888888888 555543 3 7888888888888887


Q ss_pred             cCCcCCCC-CcchhhhccCcccccccchhHHHh------------------------------------hhhHHHHHhhc
Q 048561          178 KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL------------------------------------SSTLIEVLFLN  220 (382)
Q Consensus       178 ~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l------------------------------------~~~L~~L~l~~  220 (382)
                      ..|..++. .+|++|++++|.+++.-...+..+                                    ..+|+.|++++
T Consensus       162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~  241 (597)
T 3oja_B          162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH  241 (597)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred             CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence            77777766 778888888887774321211111                                    01344555555


Q ss_pred             cccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561          221 NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       221 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  300 (382)
                      |.+++  +..+..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++++++
T Consensus       242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~  318 (597)
T 3oja_B          242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER  318 (597)
T ss_dssp             SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc
Confidence            55553  3456777888888888888887777778888888888888888874 56666677888888888888887766


Q ss_pred             cccCCCCCCEEEccCCCCCCCCC-cccccchhhhccCCCCCC
Q 048561          301 LCRKLIKNGVLDVNRNCIHYLPD-QRSTHECALFFLQPRFCF  341 (382)
Q Consensus       301 ~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~np~~c~  341 (382)
                      .+..+++|+.|+|++|.|+.+|. ..+.+..+.+.+|++.|.
T Consensus       319 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             GHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             ccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence            67777888888888888887752 334455566667777663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.9e-32  Score=262.98  Aligned_cols=271  Identities=19%  Similarity=0.120  Sum_probs=195.2

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...++.++++++.+.. ++...+.++++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            4577888888888776 455557788888888888888887666788888888888888888887667778888888888


Q ss_pred             EecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHh-------------
Q 048561          146 DIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL-------------  209 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l-------------  209 (382)
                      ++++|.++ .+|... . +++|++|++++|.+++..+..+.. .+|++|++++|.+++.-...+.++             
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            88888888 666554 3 788888888888888777776766 778888888887764321111111             


Q ss_pred             -----------------------hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561          210 -----------------------SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL  266 (382)
Q Consensus       210 -----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  266 (382)
                                             ..+|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                                   01344555555555432  35667777888888888777666777777788888888


Q ss_pred             cCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC-cccccchhhhccCCCCCC
Q 048561          267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD-QRSTHECALFFLQPRFCF  341 (382)
Q Consensus       267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~np~~c~  341 (382)
                      ++|.++ .++..+..+++|++|++++|+++++++.+..+++|+.|++++|.|+.++. ....+..+.+.+|++.|.
T Consensus       280 ~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence            888777 45556667778888888888877766666777788888888888877752 334555666777887774

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.9e-31  Score=260.96  Aligned_cols=257  Identities=16%  Similarity=0.178  Sum_probs=222.4

Q ss_pred             cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcc--cCCCCCCCEEEeecCCCCccCccc-ccCCCC
Q 048561           65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPK--LAQLPYLYELDISNNKFSGTFPVA-ILGKND  141 (382)
Q Consensus        65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~  141 (382)
                      ...+++.|++++|.+.+ ..+..|+++++|++|++++|.+++.++..  ++.+++|++|+|++|.+++..|.. +..+++
T Consensus        77 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccccCCEEeCCCCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            35689999999999987 46778999999999999999998765555  899999999999999999777766 789999


Q ss_pred             CcEEEecCCCCCCCCCcccc-----------------------------------cCCCCEEeCCCCcCCCcCCcCCC--
Q 048561          142 LSFLDIRFNFFTGSVPPQVF-----------------------------------MQTLDVLFLNNNNFMQKLPQNLG--  184 (382)
Q Consensus       142 L~~L~Ls~n~l~~~~p~~~~-----------------------------------l~~L~~L~L~~n~l~~~~p~~~~--  184 (382)
                      |++|++++|.+++..+..+.                                   +++|++|++++|.+++..+..+.  
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  235 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA  235 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence            99999999999866655432                                   25788899988887654433221  


Q ss_pred             --------------------------------------CCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          185 --------------------------------------STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       185 --------------------------------------~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                                                            ..++++|++++|.+.+..|..+..+ ++|+.|++++|.+.+.
T Consensus       236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEE
T ss_pred             ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCccccc
Confidence                                                  1368889999999998888888887 8999999999999988


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCC
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKL  305 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l  305 (382)
                      .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|.++..+++|++|+|++|+|+++++ .+..+
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence            89999999999999999999998888899999999999999999998889999999999999999999999876 46899


Q ss_pred             CCCCEEEccCCCCCCCCC
Q 048561          306 IKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~lp~  323 (382)
                      ++|+.|++++|+++.-.+
T Consensus       395 ~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          395 TSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCBCCCTT
T ss_pred             CcccEEEccCCCcccCCC
Confidence            999999999999998544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=7.9e-30  Score=239.53  Aligned_cols=260  Identities=20%  Similarity=0.199  Sum_probs=201.1

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|+.+.|....-.    .....++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..++.+++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            67888888643211    112468889999998887 4566788899999999999999877788888999999999999


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCC--cCCcCCCCCcchhhhccCcccccc
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQ--KLPQNLGSTPALYLTFANNKFTGS  201 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~~  201 (382)
                      |.++ .+|..+.  ++|++|++++|.++ .++.. +. +++|++|++++|.++.  ..+..+...++++|++++|.++ .
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G  186 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-S
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-c
Confidence            9888 6676655  78999999999988 45443 44 7889999999998853  5666666678888899988888 4


Q ss_pred             cchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561          202 IPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCA  281 (382)
Q Consensus       202 lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  281 (382)
                      +|..+.   ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus       187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            665543   46788888888888777777888888888888888888766667778888888888888888 77777888


Q ss_pred             CCCCCEEEcccccCcccCC-cccC------CCCCCEEEccCCCCC
Q 048561          282 LDNLVNLSLSNNYFTGVGP-LCRK------LIKNGVLDVNRNCIH  319 (382)
Q Consensus       282 l~~L~~L~L~~N~l~~~~~-~~~~------l~~L~~L~L~~N~l~  319 (382)
                      +++|++|++++|+|+++++ .+..      ...|+.|++++|.+.
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            8888888888888887654 2222      456788888888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.4e-30  Score=240.15  Aligned_cols=262  Identities=22%  Similarity=0.200  Sum_probs=223.7

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.++++++.+..  ++..+  .++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            57889999999886  34333  379999999999999877889999999999999999999877899999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc--ccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG--SIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~--~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++|.++ .+|..+. ++|++|++++|.+++..+..+.. .+|++|++++|.++.  ..+..+..+  +|+.|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCC
Confidence            999999 7777665 89999999999998776666776 889999999999863  555556554  7999999999998


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK  304 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  304 (382)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|++|++++|+++.++..+..
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  262 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD  262 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc
Confidence            6 554443  7999999999999988888999999999999999999987778899999999999999999988888999


Q ss_pred             CCCCCEEEccCCCCCCCCCcc----------cccchhhhccCCCCC
Q 048561          305 LIKNGVLDVNRNCIHYLPDQR----------STHECALFFLQPRFC  340 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~~----------~~~~~~~~~~np~~c  340 (382)
                      +++|+.|++++|.|+++|...          .....+.+.+||..+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence            999999999999999987532          123345566777653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.9e-30  Score=262.90  Aligned_cols=271  Identities=19%  Similarity=0.146  Sum_probs=172.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCccc-ccCCCCCcEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA-ILGKNDLSFL  145 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L  145 (382)
                      ..++.|++++|.+..  ++..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++.. +..+++|++|
T Consensus       278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            345555555555543  3333455555555555555555444445555555555555555554444332 5555566666


Q ss_pred             EecCCCCCCCC--Ccccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchh-HHHhhhhHHHHHhhc
Q 048561          146 DIRFNFFTGSV--PPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRS-IGKLSSTLIEVLFLN  220 (382)
Q Consensus       146 ~Ls~n~l~~~~--p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~-l~~l~~~L~~L~l~~  220 (382)
                      ++++|.+++..  +..+. +++|++|++++|.+.+..+..+.. .+|++|++++|.+.+..+.. +..+ ++|+.|++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~  434 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSH  434 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEECTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEECCC
Confidence            66666555332  22232 566666666666666555555555 56667777777666554433 4444 6677777777


Q ss_pred             cccCCCCchhcccCcCCCccccCCccCCCC---CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561          221 NLLTGCLPYELGFLREARVFDASNNRLTGP---LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       221 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                      |.+.+..+..+..+++|++|++++|.+++.   .+..+..+++|++|++++|.+++..|.++..+++|++|+|++|++++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            777766677777777777777777777642   23456677778888888888877777778888888888888888887


Q ss_pred             cCC-cccCCCCCCEEEccCCCCCCCCCcc----cccchhhhccCCCCCC
Q 048561          298 VGP-LCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFLQPRFCF  341 (382)
Q Consensus       298 ~~~-~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~np~~c~  341 (382)
                      ..+ .+..++.| .|++++|.++++++..    ..+..+.+.+||+.|.
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            654 67778888 8888888888876532    3456677889999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=3.9e-30  Score=261.08  Aligned_cols=135  Identities=18%  Similarity=0.128  Sum_probs=107.2

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..++.|||++|+|++ +.+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            478999999999997 5667899999999999999999977777899999999999999999866666788899999999


Q ss_pred             ecCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccc
Q 048561          147 IRFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       147 Ls~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      +++|+++ .++. .+. +++|++|++++|.+.+ ..|..++. ..|++|++++|.+++..+
T Consensus       131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            9999988 4444 344 7888888888888765 34555554 667777777776654333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=1.5e-30  Score=260.46  Aligned_cols=303  Identities=18%  Similarity=0.190  Sum_probs=203.4

Q ss_pred             CCCcCceeeCCCCCCCc------ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEE
Q 048561           49 ICKYKGFYCGHPPDNLT------AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD  122 (382)
Q Consensus        49 ~C~w~gv~c~~~~~~~~------~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  122 (382)
                      .|.|.|+ |+......+      ...++.|++++|++.+ ..+..|.++++|++|++++|.+++..|.+|+.+++|++|+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            3777777 654321111      2478999999999987 4567789999999999999999988888899999999999


Q ss_pred             eecCCCCccCcccccCCCCCcEEEecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCccc
Q 048561          123 ISNNKFSGTFPVAILGKNDLSFLDIRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNKF  198 (382)
Q Consensus       123 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~l  198 (382)
                      |++|.+++..+..|.++++|++|++++|.+++ .+|..+. +++|++|++++|.+.+.++ ..+.. .+|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999997777778999999999999999884 2344444 7888888888887545444 34554 6677777777776


Q ss_pred             ccccchhHHHh-----------------------hhhHHHHHhhccccCCC-----------------------------
Q 048561          199 TGSIPRSIGKL-----------------------SSTLIEVLFLNNLLTGC-----------------------------  226 (382)
Q Consensus       199 ~~~lp~~l~~l-----------------------~~~L~~L~l~~n~l~~~-----------------------------  226 (382)
                      ++..|..+..+                       .++|+.|++++|.+.+.                             
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            65555443321                       24555556666555431                             


Q ss_pred             --------------------------------------------------------------------------------
Q 048561          227 --------------------------------------------------------------------------------  226 (382)
Q Consensus       227 --------------------------------------------------------------------------------  226 (382)
                                                                                                      
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n  320 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS  320 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred             HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence                                                                                            


Q ss_pred             ----Cchhc-ccCcCCCccccCCccCCCCCC---cCCCCCCCCCEEeCcCCcCcccCc--hhhcCCCCCCEEEcccccCc
Q 048561          227 ----LPYEL-GFLREARVFDASNNRLTGPLP---CSLGCLEKIERLNLSGNLLYGQVP--EVLCALDNLVNLSLSNNYFT  296 (382)
Q Consensus       227 ----~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~  296 (382)
                          +|..+ ..+++|++|++++|.+++.+|   ..++.+++|++|++++|.+++..+  ..+..+++|++|++++|+++
T Consensus       321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence                12122 346667777777777665442   235566777777777777764322  34667777777777777777


Q ss_pred             ccCCcccCCCCCCEEEccCCCCCCCCCccc-ccchhhhccCC-----CCCCCCCCcCccCCCC
Q 048561          297 GVGPLCRKLIKNGVLDVNRNCIHYLPDQRS-THECALFFLQP-----RFCFYPSWYNFIPCSK  353 (382)
Q Consensus       297 ~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~-~~~~~~~~~np-----~~c~~~~~~~~~~c~~  353 (382)
                      +++..+..+++|+.|++++|.|+.+|...+ .+..+.+.+|.     ..+..+..+.+..|..
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL  463 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence            766666777777777777777777665432 22223332222     2355666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=3.2e-30  Score=261.20  Aligned_cols=131  Identities=15%  Similarity=0.029  Sum_probs=102.1

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC-CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS  289 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  289 (382)
                      ++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..|.++..+++|++|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            455556666666665566666677777777777777775 3677788888888888888888888888888899999999


Q ss_pred             cccccCcccCC-cccCCCCCCEEEccCCCCCCCCCccc----ccchhhhccCCCCCC
Q 048561          290 LSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQRS----THECALFFLQPRFCF  341 (382)
Q Consensus       290 L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~~----~~~~~~~~~np~~c~  341 (382)
                      +++|++++..+ .+..+++|+.|+|++|+|+.+|+.+.    .+....+.+||+.|.
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence            99999988644 67889999999999999999887543    255667889999997

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.9e-30  Score=238.89  Aligned_cols=263  Identities=21%  Similarity=0.210  Sum_probs=149.6

Q ss_pred             CCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEee
Q 048561           49 ICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDIS  124 (382)
Q Consensus        49 ~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  124 (382)
                      .|.|+.+.|....-.    .....++.|++++|++.+ +.+..|+++++|++|++++|.+++..|..++.+++|++|+++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            467777777642210    012356677777777766 344456777777777777777776666677777777777777


Q ss_pred             cCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCC--cCCcCCCC-CcchhhhccCccccc
Q 048561          125 NNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQ--KLPQNLGS-TPALYLTFANNKFTG  200 (382)
Q Consensus       125 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~--~~p~~~~~-~~L~~L~l~~n~l~~  200 (382)
                      +|.++ .+|..+.  ++|++|++++|.+++..+..+. +++|++|++++|.+..  ..+..+.. .+|++|++++|.++ 
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            77776 5555443  5677777777777633333333 6677777777776642  34444443 55666666666665 


Q ss_pred             ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                      .+|..+.   ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.++.
T Consensus       185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence            3443322   34555555555555554555555555555555555555444444555555555555555555 4555555


Q ss_pred             CCCCCCEEEcccccCcccCCc-cc------CCCCCCEEEccCCCCCC
Q 048561          281 ALDNLVNLSLSNNYFTGVGPL-CR------KLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~~~-~~------~l~~L~~L~L~~N~l~~  320 (382)
                      .+++|++|++++|+|+++++. +.      ....++.|++++|.+..
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            555555555555555554331 11      12445555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=8e-30  Score=256.24  Aligned_cols=270  Identities=20%  Similarity=0.183  Sum_probs=189.2

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            578999999999998 56678999999999999999999888888999999999999999998 67765  788889999


Q ss_pred             ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCc-------------------------CCcCCCC--------------
Q 048561          147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQK-------------------------LPQNLGS--------------  185 (382)
Q Consensus       147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~-------------------------~p~~~~~--------------  185 (382)
                      +++|.+++ .+|..+. +++|++|++++|.+++.                         .|..+..              
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  207 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS  207 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence            99888884 2344444 77788888777766431                         1111110              


Q ss_pred             --------------------------------------------------------------------CcchhhhccCcc
Q 048561          186 --------------------------------------------------------------------TPALYLTFANNK  197 (382)
Q Consensus       186 --------------------------------------------------------------------~~L~~L~l~~n~  197 (382)
                                                                                          .++++|++++|.
T Consensus       208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  287 (562)
T 3a79_B          208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT  287 (562)
T ss_dssp             CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred             chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence                                                                                034445555555


Q ss_pred             cccccchhH-----------------------------------------------------HHhhhhHHHHHhhccccC
Q 048561          198 FTGSIPRSI-----------------------------------------------------GKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       198 l~~~lp~~l-----------------------------------------------------~~l~~~L~~L~l~~n~l~  224 (382)
                      +++.+|..+                                                     ..+ ++|++|++++|.++
T Consensus       288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~  366 (562)
T 3a79_B          288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFT  366 (562)
T ss_dssp             ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEECCSSCCC
T ss_pred             eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEECCCCccc
Confidence            555555433                                                     122 45666777777777


Q ss_pred             CCCchhcccCcCCCccccCCccCCCC--CCcCCCCCCCCCEEeCcCCcCcccCchh-hcC--------------------
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGP--LPCSLGCLEKIERLNLSGNLLYGQVPEV-LCA--------------------  281 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~--------------------  281 (382)
                      +..|..+..+++|++|++++|.+++.  +|..+..+++|++|++++|.+++.+|.. +..                    
T Consensus       367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred             cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence            66666667777777777777766642  2344555666666666666665423321 222                    


Q ss_pred             -C-CCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc-c---cccchhhhccCCCCCC
Q 048561          282 -L-DNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ-R---STHECALFFLQPRFCF  341 (382)
Q Consensus       282 -l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~np~~c~  341 (382)
                       + ++|++|+|++|+|+.+++.+..+++|+.|+|++|+|+++|+. +   ..+....+.+||+.|.
T Consensus       447 ~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          447 CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence             2 577888888888877776677889999999999999999875 3   3455567789999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.8e-30  Score=238.62  Aligned_cols=263  Identities=19%  Similarity=0.178  Sum_probs=225.3

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.++++++.+..  ++..+  .+++++|++++|.+++..+..|+++++|++|+|++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            57889999998886  33333  368999999999999777778999999999999999999777999999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc--ccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG--SIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~--~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++|.++ .+|..+. ++|++|++++|.+++..+..+.. .+|++|++++|.+..  ..+..+..+ ++|+.|++++|.+.
T Consensus       108 s~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccc
Confidence            999998 7776654 89999999999998877776776 889999999999863  566777777 88999999999988


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK  304 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  304 (382)
                      . +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|++|++++|+++.++..+..
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~  261 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD  261 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence            5 454443  8999999999999988888999999999999999999988788899999999999999999988888999


Q ss_pred             CCCCCEEEccCCCCCCCCCccc----------ccchhhhccCCCCC
Q 048561          305 LIKNGVLDVNRNCIHYLPDQRS----------THECALFFLQPRFC  340 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~~~----------~~~~~~~~~np~~c  340 (382)
                      +++|+.|++++|.|+++|....          ......+.+||..+
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            9999999999999999875322          23345566777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=256.81  Aligned_cols=129  Identities=23%  Similarity=0.253  Sum_probs=80.1

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC--CCCcCCCCC-------------------------CCCCE
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG--PLPCSLGCL-------------------------EKIER  263 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l-------------------------~~L~~  263 (382)
                      ++|++|++++|.+++..|..+..+++|++|++++|.+++  .+|..++.+                         ++|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            345555556666555555555555555555555555553  223334444                         44555


Q ss_pred             EeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc-c---cccchhhhccCCCC
Q 048561          264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ-R---STHECALFFLQPRF  339 (382)
Q Consensus       264 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~np~~  339 (382)
                      |++++|.+++.+|..+.  ++|++|++++|+|+.++..+..+++|+.|++++|+|+.+|.. +   ..+..+.+.+|++.
T Consensus       404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            55555554444443332  577777777777776666667888899999999999988875 3   34556677889988


Q ss_pred             CC
Q 048561          340 CF  341 (382)
Q Consensus       340 c~  341 (382)
                      |.
T Consensus       482 c~  483 (520)
T 2z7x_B          482 CS  483 (520)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.6e-30  Score=254.53  Aligned_cols=252  Identities=18%  Similarity=0.142  Sum_probs=188.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+|+.|++++|.+.+ +....|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        80 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           80 FNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             TTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            455666666666554 3444455666666666666666655555666666666666666666655555666666666666


Q ss_pred             ecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          147 IRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       147 Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      +++|.++ .++.. +. +++|+.|++++|.+.+..+..+.. .+|++|++++|...+.++...... .+|+.|++++|.+
T Consensus       159 l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l  236 (477)
T 2id5_A          159 LEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNL  236 (477)
T ss_dssp             EESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCC
T ss_pred             CCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcc
Confidence            6666666 33332 22 566777777777666655555555 667778888777666677666554 4788999999999


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC  302 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~  302 (382)
                      +...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|+|+++++ .+
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence            86666788999999999999999998778889999999999999999998889999999999999999999999876 46


Q ss_pred             cCCCCCCEEEccCCCCCCC
Q 048561          303 RKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       303 ~~l~~L~~L~L~~N~l~~l  321 (382)
                      ..+++|+.|+|++|+++.-
T Consensus       317 ~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          317 HSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             SCGGGCCEEECCSSCEECS
T ss_pred             CCCcccCEEEccCCCccCc
Confidence            8899999999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1e-29  Score=261.01  Aligned_cols=273  Identities=17%  Similarity=0.147  Sum_probs=211.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc--CCcccCC--CCCCCEEEeecCCCCccCcccccCCCCC
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT--ISPKLAQ--LPYLYELDISNNKFSGTFPVAILGKNDL  142 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  142 (382)
                      ..++.|++++|.+.+ ..+..|.++++|++|++++|.+...  ....+..  .++|++|++++|++++..|..+..+++|
T Consensus       329 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             TTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            455666666666665 3445566666666666666653321  1112222  2466777777777777777788888999


Q ss_pred             cEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc--cccchhHHHhhhhHHHHH
Q 048561          143 SFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT--GSIPRSIGKLSSTLIEVL  217 (382)
Q Consensus       143 ~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L~  217 (382)
                      ++|++++|.+.+.++.. +. +++|++|++++|.+++..+..+.. .++++|++++|.+.  +.+|..+..+ ++|+.|+
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~  486 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILD  486 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC-CCCCEEE
Confidence            99999999988777643 33 788999999999888777777776 78889999998876  4677888877 7899999


Q ss_pred             hhccccCCCCchhcccCcCCCccccCCccCCCCC--------CcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561          218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPL--------PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS  289 (382)
Q Consensus       218 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  289 (382)
                      +++|.+++..+..+.++++|++|++++|.+++..        ...+..+++|++|++++|+++...+..+..+++|+.|+
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence            9999999888888999999999999999987532        12377889999999999999954445789999999999


Q ss_pred             cccccCcccCCc-ccCCCCCCEEEccCCCCCCCCCc-----ccccchhhhccCCCCCC
Q 048561          290 LSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYLPDQ-----RSTHECALFFLQPRFCF  341 (382)
Q Consensus       290 L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~-----~~~~~~~~~~~np~~c~  341 (382)
                      |++|+++++++. +..+++|+.|+|++|.|+++++.     ...+....+.+||+.|+
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            999999998774 68899999999999999998753     34566778889999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.1e-30  Score=245.45  Aligned_cols=274  Identities=16%  Similarity=0.173  Sum_probs=225.2

Q ss_pred             CCCCCCcCceeeCCCCCCCc------ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCC
Q 048561           46 GSDICKYKGFYCGHPPDNLT------AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLY  119 (382)
Q Consensus        46 ~~~~C~w~gv~c~~~~~~~~------~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  119 (382)
                      ....|.|.++ |+......+      ..+++.|++++|++.+ +....|.++++|++|++++|.+++..+..|+++++|+
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            4456899987 653322211      2479999999999997 5566799999999999999999988888899999999


Q ss_pred             EEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCc--ccc-cCCCCEEeCCCCc-CCCcCCcCCCC-Ccchhhhcc
Q 048561          120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPP--QVF-MQTLDVLFLNNNN-FMQKLPQNLGS-TPALYLTFA  194 (382)
Q Consensus       120 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~-l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~l~  194 (382)
                      +|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+. +++|++|++++|. +.+..+..+.. .+|++|+++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            9999999999554455899999999999999999 6666  343 8999999999994 66555667776 889999999


Q ss_pred             CcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCC---CCCCCCEEeCcCCcC
Q 048561          195 NNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLG---CLEKIERLNLSGNLL  271 (382)
Q Consensus       195 ~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~N~l  271 (382)
                      +|.+++..|..+..+ ++|++|++++|.+.......+..+++|+.|++++|.+++..+..+.   ....++.++++++.+
T Consensus       183 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          183 ASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             ETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             CCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            999998888888887 7899999999998754444456799999999999999975544433   456788999999988


Q ss_pred             cc----cCchhhcCCCCCCEEEcccccCcccCCc-ccCCCCCCEEEccCCCCCCCCC
Q 048561          272 YG----QVPEVLCALDNLVNLSLSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       272 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      .+    .+|.++..+++|++|++++|+++.++.. +..+++|+.|++++|+++.-++
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            75    4678889999999999999999988776 5899999999999999988543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=7.4e-30  Score=244.97  Aligned_cols=270  Identities=17%  Similarity=0.096  Sum_probs=211.7

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc-cccCCCCCcEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV-AILGKNDLSFL  145 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L  145 (382)
                      .+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .+..+++|++|
T Consensus        69 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           69 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            578889999998887 45567888999999999999998777778888999999999999988 4454 45788999999


Q ss_pred             EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------------------------------C
Q 048561          146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------------------------------T  186 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------------------------------~  186 (382)
                      ++++|.+++..+..+. +++|++|++++|.+++.....+..                                      .
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~  226 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  226 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence            9999998855555454 788888888888876532221111                                      2


Q ss_pred             cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561          187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL  266 (382)
Q Consensus       187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  266 (382)
                      ++++|++++|.+++.  ..+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++..+..+++|++|++
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred             cccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence            466677777777643  456666 789999999999998889999999999999999999984 6767788999999999


Q ss_pred             cCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC--CcccccchhhhccCCCCCCCCC
Q 048561          267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP--DQRSTHECALFFLQPRFCFYPS  344 (382)
Q Consensus       267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp--~~~~~~~~~~~~~np~~c~~~~  344 (382)
                      ++|.+. .+|..+..+++|++|++++|.|+.++  +..+++|+.|++++|+++.-.  ..+.......+.+++..|....
T Consensus       303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  379 (390)
T 3o6n_A          303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY  379 (390)
T ss_dssp             CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTTC
T ss_pred             CCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecccc
Confidence            999999 67777888999999999999999874  678899999999999987621  1111222334556677776443


Q ss_pred             C
Q 048561          345 W  345 (382)
Q Consensus       345 ~  345 (382)
                      .
T Consensus       380 ~  380 (390)
T 3o6n_A          380 Q  380 (390)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=7.3e-30  Score=260.06  Aligned_cols=265  Identities=16%  Similarity=0.169  Sum_probs=199.9

Q ss_pred             cceeEEEcCCCCCCCCCCcc--ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCC-Cc
Q 048561           67 IALASIDFNGFELAAPTLDG--FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND-LS  143 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~  143 (382)
                      .+++.|++++|+++.  ++.  .++++++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |+
T Consensus       305 ~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence            355666666666653  343  56677777777777777776676 6677777777777777776 66777777777 88


Q ss_pred             EEEecCCCCCCCCCcccc---cCCCCEEeCCCCcCCCcCCcCCC-------C-CcchhhhccCcccccccchhHHHhhhh
Q 048561          144 FLDIRFNFFTGSVPPQVF---MQTLDVLFLNNNNFMQKLPQNLG-------S-TPALYLTFANNKFTGSIPRSIGKLSST  212 (382)
Q Consensus       144 ~L~Ls~n~l~~~~p~~~~---l~~L~~L~L~~n~l~~~~p~~~~-------~-~~L~~L~l~~n~l~~~lp~~l~~l~~~  212 (382)
                      +|++++|.++ .+|..+.   +++|++|++++|.+++..|..+.       . .+|++|++++|.++ .+|..++...++
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~  458 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP  458 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC
Confidence            8888888887 7776555   23788888888888887777766       3 57888888888888 677776653378


Q ss_pred             HHHHHhhccccCCCCch-hcccC-------cCCCccccCCccCCCCCCcCCC--CCCCCCEEeCcCCcCcccCchhhcCC
Q 048561          213 LIEVLFLNNLLTGCLPY-ELGFL-------REARVFDASNNRLTGPLPCSLG--CLEKIERLNLSGNLLYGQVPEVLCAL  282 (382)
Q Consensus       213 L~~L~l~~n~l~~~~~~-~~~~l-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l  282 (382)
                      |+.|++++|.++ .+|. .+...       ++|++|++++|.++ .+|..+.  .+++|++|++++|++++ +|..+..+
T Consensus       459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l  535 (636)
T 4eco_A          459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS  535 (636)
T ss_dssp             CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence            899999999988 4443 33333       38999999999998 6787776  88999999999999996 88888899


Q ss_pred             CCCCEEEc------ccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc-cccchhhhccCCCCC
Q 048561          283 DNLVNLSL------SNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR-STHECALFFLQPRFC  340 (382)
Q Consensus       283 ~~L~~L~L------~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~-~~~~~~~~~~np~~c  340 (382)
                      ++|++|+|      ++|++.+..| .+..+++|+.|+|++|.|+.+|+.+ ..+..+.+.+|+..|
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS  601 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCE
T ss_pred             CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCcc
Confidence            99999999      4566776544 7888999999999999998888754 345556666777766

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.1e-29  Score=257.12  Aligned_cols=278  Identities=16%  Similarity=0.075  Sum_probs=220.3

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..|+.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..+..|..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            478889999998887 4566788899999999999998887777788899999999999998854444568888999999


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------------------------------Cc
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------------------------------TP  187 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------------------------------~~  187 (382)
                      |++|.+++..|..+. +++|++|++++|.+++.....+..                                      .+
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            999998866665555 788888888888877543222211                                      24


Q ss_pred             chhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCc
Q 048561          188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLS  267 (382)
Q Consensus       188 L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  267 (382)
                      |+.|++++|.+++  +..+..+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+++
T Consensus       234 L~~L~L~~n~l~~--~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred             CCEEECCCCCCCC--ChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence            6667777777774  3556776 889999999999999999999999999999999999995 67777889999999999


Q ss_pred             CCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC--CCcccccchhhhccCCCCCCCCCC
Q 048561          268 GNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL--PDQRSTHECALFFLQPRFCFYPSW  345 (382)
Q Consensus       268 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~~~~~~~~~np~~c~~~~~  345 (382)
                      +|.+. .+|..+..+++|+.|+|++|.|++.+  +..+++|+.|+|++|.++.-  ...+.......+.+++..|.....
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  386 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ  386 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcchh
Confidence            99999 78888889999999999999999874  66889999999999998752  122222333445677888887666


Q ss_pred             cCccCCC
Q 048561          346 YNFIPCS  352 (382)
Q Consensus       346 ~~~~~c~  352 (382)
                      .....|-
T Consensus       387 ~~~~~cc  393 (597)
T 3oja_B          387 LEHGLCC  393 (597)
T ss_dssp             EETTEEE
T ss_pred             ccCCccc
Confidence            5555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=263.30  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             HHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEccc
Q 048561          213 LIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN  292 (382)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  292 (382)
                      ++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            33344444444444444445555555555555555544455555555555555555555544455555555555555555


Q ss_pred             ccCcccCC-cccCCCCCCEEEccCCCCCCCC
Q 048561          293 NYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       293 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      |+++++.+ .+..+++|+.|++++|.+++++
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            55555443 3455555555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=6.1e-29  Score=251.79  Aligned_cols=252  Identities=17%  Similarity=0.119  Sum_probs=226.6

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|++++|.+.+ +.+..|+++++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            79999999999998 56777999999999999999999 78999999999999999999999777889999999999999


Q ss_pred             cCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcC--CcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccc
Q 048561          148 RFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKL--PQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNL  222 (382)
Q Consensus       148 s~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~--p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~  222 (382)
                      ++|.+.+.++... . +++|++|++++|.+++..  +..+.. .+|++|++++|.+.+..+..+..+ ++|+.|++++|.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCc
Confidence            9999998887753 3 899999999999998765  666666 889999999999997778888887 789999999999


Q ss_pred             cCCCCch-hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCccc---CchhhcCCCCCCEEEcccccCccc
Q 048561          223 LTGCLPY-ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ---VPEVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       223 l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      +.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|+++++
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            9877654 488999999999999999988899999999999999999999862   336788999999999999999997


Q ss_pred             CC-cccCCCCCCEEEccCCCCCCCC
Q 048561          299 GP-LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       299 ~~-~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      ++ .+..+++|+.|+|++|++++++
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             ChhhhccccCCCEEECCCCccCcCC
Confidence            65 6899999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.8e-29  Score=234.59  Aligned_cols=286  Identities=16%  Similarity=0.154  Sum_probs=211.4

Q ss_pred             chhhhhHHHHHHHHHHHHhCcCCCCCCCCCCCC---CCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCC---CCccc
Q 048561           14 FLDQRLAAIYPIIQTFKNTITSDPFNITSTWIG---SDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAP---TLDGF   87 (382)
Q Consensus        14 ~~~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~~---~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~---~~~~~   87 (382)
                      ++.++.+..+++...-.++-..|...++..|..   .|+|.|.+.-|.........          ....|.   ..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~----------~~~~g~~~~~~~~~   74 (328)
T 4fcg_A            5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI----------ETRTGRALKATADL   74 (328)
T ss_dssp             ------------CCCC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTS----------CCSHHHHHHHHHHH
T ss_pred             cccccccccccceeeeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccc----------cccCCcchhhhHHH
Confidence            344444444444444444333344445566763   57888887776321111000          001110   00111


Q ss_pred             --cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCC
Q 048561           88 --IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQT  164 (382)
Q Consensus        88 --~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~  164 (382)
                        .....+++.|++++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+. +++
T Consensus        75 l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~  151 (328)
T 4fcg_A           75 LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR  151 (328)
T ss_dssp             HHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred             HhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcC
Confidence              124578999999999999 78888999999999999999999 89999999999999999999999 8888776 899


Q ss_pred             CCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCC
Q 048561          165 LDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASN  244 (382)
Q Consensus       165 L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  244 (382)
                      |++|++++|.+.+.+|..+...              .++..+..+ ++|+.|++++|.++ .+|..+..+++|++|++++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~  215 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLAST--------------DASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN  215 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEE--------------C-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred             CCEEECCCCCCccccChhHhhc--------------cchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence            9999999998888888765431              111123334 67899999999998 7888899999999999999


Q ss_pred             ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CC
Q 048561          245 NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LP  322 (382)
Q Consensus       245 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp  322 (382)
                      |.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+..+ .+..+++|+.|+|++|++.+ +|
T Consensus       216 N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             SCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            99994 67789999999999999999999999999999999999999998888555 78999999999999988655 78


Q ss_pred             Ccccccc
Q 048561          323 DQRSTHE  329 (382)
Q Consensus       323 ~~~~~~~  329 (382)
                      +.+..+.
T Consensus       295 ~~l~~L~  301 (328)
T 4fcg_A          295 SLIAQLP  301 (328)
T ss_dssp             GGGGGSC
T ss_pred             HHHhhcc
Confidence            7655433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2e-29  Score=234.00  Aligned_cols=247  Identities=19%  Similarity=0.194  Sum_probs=181.9

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc--CCcccCCCCCCCEEEe
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT--ISPKLAQLPYLYELDI  123 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L  123 (382)
                      |.|.++.|....-.    ....+++.|++++|++.. +....|+++++|++|++++|.++..  .+..+..+++|++|++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            78999999763211    112467778888887775 4555577788888888888877632  3556666778888888


Q ss_pred             ecCCCCccCcccccCCCCCcEEEecCCCCCCCCC-cccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561          124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVP-PQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG  200 (382)
Q Consensus       124 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~  200 (382)
                      ++|.++ .+|..+..+++|++|++++|.+++..+ ..+. +++|++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            888777 566667777888888888887773332 1222 677788888777776666655554 555666666555442


Q ss_pred             ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                                              ...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus       165 ------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          165 ------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             ------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             ------------------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence                                    03456678888999999999999977788888999999999999999977777888


Q ss_pred             CCCCCCEEEcccccCcccCC-cccCCC-CCCEEEccCCCCCCCC
Q 048561          281 ALDNLVNLSLSNNYFTGVGP-LCRKLI-KNGVLDVNRNCIHYLP  322 (382)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~L~~N~l~~lp  322 (382)
                      .+++|++|++++|++++..+ .+..++ +|+.|+|++|.++.-.
T Consensus       221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            89999999999999998655 567774 8999999999998754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=5.3e-28  Score=248.22  Aligned_cols=256  Identities=17%  Similarity=0.110  Sum_probs=168.4

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..++++++|++|+|++|.+++..+..|.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            478889999988887 5666788888888888888888887788888888888888888888844444688888888888


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHh-hhhHHHHHhhcccc
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL-SSTLIEVLFLNNLL  223 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l-~~~L~~L~l~~n~l  223 (382)
                      +++|.+++..+..+. +++|++|++++|.+++..+..++. .+|++|++++|.+++..+..+... ..+|+.|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            888888744444444 788888888888888777777765 678888888887775555444321 14567777777766


Q ss_pred             CCCCchhcccC---------------------------cC--------------------------CCccccCCccCCCC
Q 048561          224 TGCLPYELGFL---------------------------RE--------------------------ARVFDASNNRLTGP  250 (382)
Q Consensus       224 ~~~~~~~~~~l---------------------------~~--------------------------L~~L~Ls~n~l~~~  250 (382)
                      .+..+..+..+                           ++                          |+.|++++|.+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            65555443322                           23                          45555555555444


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc-----CC-----cccCCCCCCEEEccCCCCCC
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-----GP-----LCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~~-----~~~~l~~L~~L~L~~N~l~~  320 (382)
                      .+..++.+++|++|++++|.+.+..|.++..+++|+.|++++|...+.     .+     .+..+++|+.|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            444445555555555555555544444455555555555544432210     01     34556667777777777776


Q ss_pred             CCC
Q 048561          321 LPD  323 (382)
Q Consensus       321 lp~  323 (382)
                      +++
T Consensus       344 ~~~  346 (680)
T 1ziw_A          344 IKS  346 (680)
T ss_dssp             CCT
T ss_pred             CCh
Confidence            543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1e-28  Score=229.20  Aligned_cols=242  Identities=21%  Similarity=0.208  Sum_probs=193.6

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEe
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDI  147 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L  147 (382)
                      +.++.++++++.  ++..+  .++|++|++++|.++...+..|+++++|++|+|++|.++.  ..+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~--ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTS--VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCccc--CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            468888888886  33322  3689999999999995444557999999999999999983  23667778999999999


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++|.+. .++..+. +++|++|++++|.+++..+ ..+.. .+|++|+++                         +|.+.
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~  139 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-------------------------HTHTR  139 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-------------------------TSCCE
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-------------------------CCcCC
Confidence            999998 5666554 8999999999998875543 23333 444445444                         44444


Q ss_pred             CCCchhcccCcCCCccccCCccCCC-CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561          225 GCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC  302 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~  302 (382)
                      +..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++++++ .+
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence            4556677889999999999999986 578889999999999999999998888999999999999999999999776 67


Q ss_pred             cCCCCCCEEEccCCCCCCCCC-cc----cccchhhhccCCCCCC
Q 048561          303 RKLIKNGVLDVNRNCIHYLPD-QR----STHECALFFLQPRFCF  341 (382)
Q Consensus       303 ~~l~~L~~L~L~~N~l~~lp~-~~----~~~~~~~~~~np~~c~  341 (382)
                      ..+++|+.|++++|.+++.++ .+    ..+..+.+.+|++.|.
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            889999999999999998643 22    2455677789999886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.1e-27  Score=249.76  Aligned_cols=261  Identities=15%  Similarity=0.135  Sum_probs=163.2

Q ss_pred             ceeEEEcCCCCCCCCCCcc--ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCC-CcE
Q 048561           68 ALASIDFNGFELAAPTLDG--FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND-LSF  144 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~  144 (382)
                      +++.|++++|.+..  ++.  .++++++|+.|++++|.++ .+| .++.+++|++|+|++|.++ .+|..+..+++ |++
T Consensus       549 ~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          549 KIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred             CccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence            45555555555542  233  4555555666666665555 455 5555556666666666655 55555555555 666


Q ss_pred             EEecCCCCCCCCCcccc-c--CCCCEEeCCCCcCCCcCCcCC------CCCcchhhhccCcccccccchhHHHhhhhHHH
Q 048561          145 LDIRFNFFTGSVPPQVF-M--QTLDVLFLNNNNFMQKLPQNL------GSTPALYLTFANNKFTGSIPRSIGKLSSTLIE  215 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~~~-l--~~L~~L~L~~n~l~~~~p~~~------~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~  215 (382)
                      |+|++|.++ .+|..+. +  ++|+.|++++|.+.+.+|...      ...+|++|++++|.++ .+|..++...++|+.
T Consensus       624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIST  701 (876)
T ss_dssp             EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred             EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence            666666655 5554443 2  236666666666655444322      1135667777777777 667666533367788


Q ss_pred             HHhhccccCCCCchhccc--------CcCCCccccCCccCCCCCCcCCC--CCCCCCEEeCcCCcCcccCchhhcCCCCC
Q 048561          216 VLFLNNLLTGCLPYELGF--------LREARVFDASNNRLTGPLPCSLG--CLEKIERLNLSGNLLYGQVPEVLCALDNL  285 (382)
Q Consensus       216 L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  285 (382)
                      |++++|.+. .+|..+..        +++|+.|+|++|.++ .+|..+.  .+++|+.|++++|.|++ +|..+..+++|
T Consensus       702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L  778 (876)
T 4ecn_A          702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL  778 (876)
T ss_dssp             EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred             EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence            888888777 44443322        237888888888888 6777776  78888888888888885 67777788888


Q ss_pred             CEEEccc------ccCcccCC-cccCCCCCCEEEccCCCCCCCCCccc-ccchhhhccCCC
Q 048561          286 VNLSLSN------NYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQRS-THECALFFLQPR  338 (382)
Q Consensus       286 ~~L~L~~------N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~~-~~~~~~~~~np~  338 (382)
                      +.|+|++      |++.+..| .+..+++|+.|+|++|.|..+|+.+. .+..+.+.+|+.
T Consensus       779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred             CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCC
Confidence            8888866      66666444 67778888888888888877776432 333344444544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=251.37  Aligned_cols=253  Identities=17%  Similarity=0.131  Sum_probs=180.2

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcc--cCCCCCCCEEEeecCCCCccCc-ccccCCCCC
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPK--LAQLPYLYELDISNNKFSGTFP-VAILGKNDL  142 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L  142 (382)
                      ..+|+.|+|++|.+.+ ..+..|+++++|++|++++|.+++.++..  ++++++|++|+|++|.+++..+ ..|.++++|
T Consensus        72 L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           72 LPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             CTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCEEECCCCcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            4466677777777665 34556667777777777777766555444  6667777777777777765433 456677777


Q ss_pred             cEEEecCCCCCCCCCcccc-c--CC------------------------------CCEEeCCCCcCCCcCCcCCC-----
Q 048561          143 SFLDIRFNFFTGSVPPQVF-M--QT------------------------------LDVLFLNNNNFMQKLPQNLG-----  184 (382)
Q Consensus       143 ~~L~Ls~n~l~~~~p~~~~-l--~~------------------------------L~~L~L~~n~l~~~~p~~~~-----  184 (382)
                      ++|++++|.+++..+..+. +  ++                              |+.|++++|.+++..+..+.     
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            7777777766654444332 2  33                              33444444433322221110     


Q ss_pred             ----------------------------------CCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561          185 ----------------------------------STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE  230 (382)
Q Consensus       185 ----------------------------------~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~  230 (382)
                                                        ..++++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~  309 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA  309 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHH
Confidence                                              0235556666666665555556665 78999999999999988999


Q ss_pred             cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCE
Q 048561          231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGV  310 (382)
Q Consensus       231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~  310 (382)
                      |..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++++.    .+++|+.
T Consensus       310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~  385 (844)
T 3j0a_A          310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPD  385 (844)
T ss_dssp             TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSE
T ss_pred             hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcch
Confidence            999999999999999999888999999999999999999999777788999999999999999998654    3677888


Q ss_pred             EEccCCCCCCCCCc
Q 048561          311 LDVNRNCIHYLPDQ  324 (382)
Q Consensus       311 L~L~~N~l~~lp~~  324 (382)
                      |++++|+++.+|..
T Consensus       386 L~l~~N~l~~l~~~  399 (844)
T 3j0a_A          386 IFLSGNKLVTLPKI  399 (844)
T ss_dssp             EEEESCCCCCCCCC
T ss_pred             hccCCCCccccccc
Confidence            88888888887754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-27  Score=234.02  Aligned_cols=226  Identities=17%  Similarity=0.118  Sum_probs=138.4

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.|+|++|++.+ +.+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|
T Consensus        76 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           76 NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            45666666666655 34455666666666666666666555556666666666666666666444444556666666666


Q ss_pred             cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      ++|.++ .++. .+. +++|++|++++|...+.++..                      .+..+ .+|+.|++++|.+++
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------------------~~~~l-~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG----------------------AFEGL-FNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTT----------------------TTTTC-TTCCEEECTTSCCSS
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChh----------------------hccCC-CCCCEEECCCCcccc
Confidence            666665 3333 222 566666666654333333321                      12222 344444444444443


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccC
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRK  304 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~  304 (382)
                      . | .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+|++|+|+++++ .+..
T Consensus       211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            2 2 35566777777777777776667777777777777777777776667777777777777777777777655 3566


Q ss_pred             CCCCCEEEccCCCCCC
Q 048561          305 LIKNGVLDVNRNCIHY  320 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~  320 (382)
                      +++|+.|+|++|.+..
T Consensus       289 l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             ccCCCEEEccCCCcCC
Confidence            7777777777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.6e-28  Score=241.01  Aligned_cols=283  Identities=17%  Similarity=0.104  Sum_probs=212.3

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|+++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            589999999999998 56678999999999999999999888999999999999999999999 67776  899999999


Q ss_pred             ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCccc--ccccchhHHHhh------------
Q 048561          147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKF--TGSIPRSIGKLS------------  210 (382)
Q Consensus       147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l--~~~lp~~l~~l~------------  210 (382)
                      +++|.+++ .+|..+. +++|++|++++|.+++.....+....+++|++++|.+  .+..|..+..+.            
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  176 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK  176 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence            99999986 4667666 8999999999999976332222223349999999988  555555443310            


Q ss_pred             ----------------------------------------------------------------------hhHHHHHhhc
Q 048561          211 ----------------------------------------------------------------------STLIEVLFLN  220 (382)
Q Consensus       211 ----------------------------------------------------------------------~~L~~L~l~~  220 (382)
                                                                                            .+|+.|++++
T Consensus       177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  256 (520)
T 2z7x_B          177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN  256 (520)
T ss_dssp             CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred             chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence                                                                                  1466677778


Q ss_pred             cccCCCCchhc-----------------------------------------------------ccCcCCCccccCCccC
Q 048561          221 NLLTGCLPYEL-----------------------------------------------------GFLREARVFDASNNRL  247 (382)
Q Consensus       221 n~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~Ls~n~l  247 (382)
                      |.+.+.+|..+                                                     ..+++|++|++++|.+
T Consensus       257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l  336 (520)
T 2z7x_B          257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL  336 (520)
T ss_dssp             EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence            87776666554                                                     4567788888888888


Q ss_pred             CCCCCcCCCCCCCCCEEeCcCCcCcc--cCchhhcCCCCCCEEEcccccCcc-cCC-cccCCCCCCEEEccCCCCCC-CC
Q 048561          248 TGPLPCSLGCLEKIERLNLSGNLLYG--QVPEVLCALDNLVNLSLSNNYFTG-VGP-LCRKLIKNGVLDVNRNCIHY-LP  322 (382)
Q Consensus       248 ~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~~L~L~~N~l~~-lp  322 (382)
                      ++.+|..++.+++|++|++++|++++  .+|..+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.+++ +|
T Consensus       337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF  416 (520)
T ss_dssp             CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence            87777788888888888888888875  455677888888888888888887 443 36777888888888888864 33


Q ss_pred             Ccc-cccchhhhccCCC--------CCCCCCCcCccCCCC
Q 048561          323 DQR-STHECALFFLQPR--------FCFYPSWYNFIPCSK  353 (382)
Q Consensus       323 ~~~-~~~~~~~~~~np~--------~c~~~~~~~~~~c~~  353 (382)
                      ..+ ..+..+.+.+|..        .+..+..+.+..|..
T Consensus       417 ~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence            332 2333333333322        245566666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=7.4e-30  Score=237.72  Aligned_cols=244  Identities=20%  Similarity=0.134  Sum_probs=199.7

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCc-ccCCcccC-------CCCCCCEEEeecCCCCccCcccc--
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFS-GTISPKLA-------QLPYLYELDISNNKFSGTFPVAI--  136 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l--  136 (382)
                      ..++.+++++|.+ . + +..+...  |+.|++++|.++ +.+|..+.       ++++|++|+|++|.+++.+|..+  
T Consensus        43 ~~L~~l~l~~n~l-~-~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-A-D-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT-C-C-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc-c-c-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3577888899988 3 3 3333333  888999999984 56676665       78999999999999998888876  


Q ss_pred             cCCCCCcEEEecCCCCCCCCCcccc-c-----CCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccc--cchhH-
Q 048561          137 LGKNDLSFLDIRFNFFTGSVPPQVF-M-----QTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGS--IPRSI-  206 (382)
Q Consensus       137 ~~l~~L~~L~Ls~n~l~~~~p~~~~-l-----~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--lp~~l-  206 (382)
                      ..+++|++|++++|.+++. |..+. +     ++|++|++++|.+++..+..++. .+|++|++++|++.+.  ++..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8899999999999999965 76554 4     89999999999999888888877 8899999999998755  33344 


Q ss_pred             -HHhhhhHHHHHhhccccCCC--Cc-hhcccCcCCCccccCCccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561          207 -GKLSSTLIEVLFLNNLLTGC--LP-YELGFLREARVFDASNNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPEVLCA  281 (382)
Q Consensus       207 -~~l~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  281 (382)
                       ..+ ++|++|++++|.+++.  .+ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.|+ .+|..+. 
T Consensus       197 ~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          197 PLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             TTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             hccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence             555 7899999999998832  22 344678999999999999997664 45667899999999999999 7887776 


Q ss_pred             CCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC
Q 048561          282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       282 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l  321 (382)
                       ++|++|+|++|+|++.+ .+..+++|+.|++++|+|++.
T Consensus       274 -~~L~~L~Ls~N~l~~~p-~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSSCCCSCC-CTTTSCEEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCCCCCCCh-hHhhCCCCCEEeccCCCCCCC
Confidence             89999999999999984 488999999999999999863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.7e-27  Score=241.24  Aligned_cols=156  Identities=15%  Similarity=0.063  Sum_probs=126.8

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            578999999999987 5666789999999999999999988888899999999999999999977788999999999999


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHH----HHHhh
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLI----EVLFL  219 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~----~L~l~  219 (382)
                      +++|.+++..+..+. +++|++|++++|.+++ .+|..++. .+|++|++++|.+++..+..+..+ .+++    +++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~~l~~L~l~  189 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL-RENPQVNLSLDMS  189 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH-HHCTTCCCEEECT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh-hccccccceeecc
Confidence            999999854445554 8899999999999876 56887877 788999999999887666666655 3333    34555


Q ss_pred             ccccC
Q 048561          220 NNLLT  224 (382)
Q Consensus       220 ~n~l~  224 (382)
                      +|.+.
T Consensus       190 ~n~l~  194 (606)
T 3vq2_A          190 LNPID  194 (606)
T ss_dssp             TCCCC
T ss_pred             CCCcc
Confidence            54443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=7.1e-28  Score=241.05  Aligned_cols=131  Identities=22%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCch---hcccCcCCCccccCCccCCCCCC--cCCCCCCCCCEEe
Q 048561          191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPY---ELGFLREARVFDASNNRLTGPLP--CSLGCLEKIERLN  265 (382)
Q Consensus       191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~  265 (382)
                      |++++|.+. .+|..++...++|+.|++++|.+.+..+.   .+..+++|++|++++|.+++..+  ..+..+++|++|+
T Consensus       315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence            333344433 45555543226788888888888765532   25667777778887777764321  3466677777777


Q ss_pred             CcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc------------------cCCCCCCEEEccCCCCCCCCC
Q 048561          266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC------------------RKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       266 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~------------------~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +++|+++ .+|..+..+++|++|++++|.+++++..+                  ..+++|+.|+|++|+|+.+|+
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~  468 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD  468 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence            7777777 56666666677777777777766543321                  245666666666666666664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.8e-27  Score=230.71  Aligned_cols=225  Identities=18%  Similarity=0.173  Sum_probs=136.0

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|+|++|++.+ +.+..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        65 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           65 NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45556666666555 33445556666666666666665555555666666666666666665333344555666666666


Q ss_pred             cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCc-CCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQ-NLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++|.++ .++. .+. +++|++|++++|...+.++. .+..                       + ++|+.|++++|.++
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------------------l-~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-----------------------L-SNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------------C-SSCCEEECTTSCCS
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-----------------------c-cccCeecCCCCcCc
Confidence            666655 3332 222 55666666655433333322 2332                       2 34444444444444


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-ccc
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCR  303 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~  303 (382)
                      . +| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|+|++|+|+++++ .+.
T Consensus       199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            2 22 35667777777777777776667777777777777777777777667777777777777777777777655 356


Q ss_pred             CCCCCCEEEccCCCCCC
Q 048561          304 KLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       304 ~l~~L~~L~L~~N~l~~  320 (382)
                      .+++|+.|+|++|.+..
T Consensus       277 ~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             SCTTCCEEECCSSCEEC
T ss_pred             cccCCCEEEcCCCCccC
Confidence            67777777777777643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=239.81  Aligned_cols=129  Identities=22%  Similarity=0.265  Sum_probs=92.8

Q ss_pred             HHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCc-ccCchhhcCCCCCCEEEc
Q 048561          213 LIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLY-GQVPEVLCALDNLVNLSL  290 (382)
Q Consensus       213 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L  290 (382)
                      |+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  477 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  477 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence            3444444444443333 34556667777777777776666777777888888888888876 467778888888888888


Q ss_pred             ccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----ccccchhhhccCCCCCC
Q 048561          291 SNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ----RSTHECALFFLQPRFCF  341 (382)
Q Consensus       291 ~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~np~~c~  341 (382)
                      ++|++++..+ .+..+++|+.|++++|.++++|+.    ...+..+.+.+|++.|.
T Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            8888888744 678888999999999999887653    23456667788888887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.7e-27  Score=231.58  Aligned_cols=206  Identities=19%  Similarity=0.119  Sum_probs=159.6

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ..+|+.|+|++|.+.+ +.+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|
T Consensus        98 l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            4678999999999998 566789999999999999999997777779999999999999999996666688999999999


Q ss_pred             EecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      ++++|...+.++...+  +++|++|++++|.+++. |......+|++|++++|.+                         
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l-------------------------  230 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF-------------------------  230 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC-------------------------
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC-------------------------
Confidence            9999655547766433  89999999999998753 4322224455555555544                         


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      .+..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|+|++..+..+..+++|+.|+|++|.+...
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            444555666777777778877777766677777777788888888877765556667777788888888776543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=7.9e-27  Score=234.40  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=108.3

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      .+.++++++++++ + +..+.  ++|++|++++|.+++..+.+|+++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus        33 ~~~l~ls~~~L~~-i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-V-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-C-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-C-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            4789999999997 3 43332  899999999999998777899999999999999999998888999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccc
Q 048561          149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFT  199 (382)
Q Consensus       149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~  199 (382)
                      +|.++ .+|.. .+++|++|++++|.+++ ..|..++. .+|++|++++|.++
T Consensus       109 ~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          109 HNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            99999 78877 88999999999999987 34566766 77888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.6e-28  Score=220.37  Aligned_cols=222  Identities=18%  Similarity=0.128  Sum_probs=144.2

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.++.+++++..  ++.  +-.++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~--ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA--VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS--CCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc--CCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            456666666665  222  2246788888888888766666777888888888888888766677777888888888888


Q ss_pred             CC-CCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          150 NF-FTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       150 n~-l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      |. +....+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+++                         .
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~  144 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------------L  144 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------------C
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------------------------c
Confidence            86 5533344444 677888888888777665655554 555566665555542                         2


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCC
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKL  305 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l  305 (382)
                      .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.++..+++|+.|++++|+++++++ .+..+
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            23344556666666666666664444456666666666666666665556666666666666666666666554 35666


Q ss_pred             CCCCEEEccCCCCCC
Q 048561          306 IKNGVLDVNRNCIHY  320 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~  320 (382)
                      ++|+.|++++|++..
T Consensus       225 ~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          225 RALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cccCEEeccCCCccC
Confidence            666666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.6e-27  Score=228.06  Aligned_cols=242  Identities=19%  Similarity=0.178  Sum_probs=201.0

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      ...++.++.++..  +|..+  .++++.|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~~--iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLRE--VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSS--CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCc--CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567888888876  33333  3689999999999998888899999999999999999997777889999999999999


Q ss_pred             CCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          149 FNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       149 ~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +|.++ .++. .+. +++|++|++++|.+....+..+.. .+|++|++++|...                        ..
T Consensus       121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l------------------------~~  175 (440)
T 3zyj_A          121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL------------------------SY  175 (440)
T ss_dssp             SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC------------------------CE
T ss_pred             CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc------------------------ce
Confidence            99999 5555 344 899999999999988666655655 56666666654322                        22


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccC
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRK  304 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~  304 (382)
                      ..+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..+..+++|+.|+|++|+|+++.+ .+..
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence            23446888999999999999999 556 47889999999999999998889999999999999999999999766 6889


Q ss_pred             CCCCCEEEccCCCCCCCCCc----ccccchhhhccCCCCCC
Q 048561          305 LIKNGVLDVNRNCIHYLPDQ----RSTHECALFFLQPRFCF  341 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~np~~c~  341 (382)
                      +++|+.|+|++|+|+.+|..    ...+..+.+.+||+.|+
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            99999999999999999864    24566778889999987

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.7e-28  Score=225.46  Aligned_cols=239  Identities=18%  Similarity=0.104  Sum_probs=187.4

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .+...+++.+.+.. .+...+..+++|++|++++|.+++..|..++.+++|++|+|++|.+++..+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            45566676666654 344455667788888888888887666778888888888888888875443  778888888888


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL  227 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~  227 (382)
                      ++|.++ .++   ..++|++|++++|.+++..+..+  .+|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..
T Consensus        88 s~n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           88 NNNYVQ-ELL---VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             CSSEEE-EEE---ECTTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEE
T ss_pred             cCCccc-ccc---CCCCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCccc
Confidence            888877 333   23788888888888876655443  568888888888886555566666 78888889988888766


Q ss_pred             chhc-ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561          228 PYEL-GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI  306 (382)
Q Consensus       228 ~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  306 (382)
                      +..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|+|++|+|++++..+..++
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~  237 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence            6666 4789999999999999854 33 3358999999999999995 45568889999999999999999888888999


Q ss_pred             CCCEEEccCCCCC
Q 048561          307 KNGVLDVNRNCIH  319 (382)
Q Consensus       307 ~L~~L~L~~N~l~  319 (382)
                      +|+.|++++|.++
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            9999999999998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.2e-26  Score=235.33  Aligned_cols=276  Identities=20%  Similarity=0.157  Sum_probs=213.4

Q ss_pred             CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCc
Q 048561           64 LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS  143 (382)
Q Consensus        64 ~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  143 (382)
                      ....+++.|+|++|++++ +.+++|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|+++++|+
T Consensus        73 ~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             TTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence            335689999999999998 6677899999999999999999977667899999999999999999966666799999999


Q ss_pred             EEEecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC----------------------------C-------
Q 048561          144 FLDIRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS----------------------------T-------  186 (382)
Q Consensus       144 ~L~Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~----------------------------~-------  186 (382)
                      +|++++|.+++ .+|..+. +++|++|++++|.+++..+..+..                            .       
T Consensus       152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l  231 (635)
T 4g8a_A          152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  231 (635)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence            99999999974 3455555 899999999999876543322110                            0       


Q ss_pred             --------------------------------------------------------------------------------
Q 048561          187 --------------------------------------------------------------------------------  186 (382)
Q Consensus       187 --------------------------------------------------------------------------------  186 (382)
                                                                                                      
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l  311 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF  311 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred             hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence                                                                                            


Q ss_pred             -----------------cchhhhccCc-------------------------------------------cccc--ccch
Q 048561          187 -----------------PALYLTFANN-------------------------------------------KFTG--SIPR  204 (382)
Q Consensus       187 -----------------~L~~L~l~~n-------------------------------------------~l~~--~lp~  204 (382)
                                       .++.|++.+|                                           .+..  ..+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  391 (635)
T 4g8a_A          312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ  391 (635)
T ss_dssp             EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred             cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence                             0011111111                                           1100  0000


Q ss_pred             h------------------------------------------------HHHhhhhHHHHHhhccccCCCCchhcccCcC
Q 048561          205 S------------------------------------------------IGKLSSTLIEVLFLNNLLTGCLPYELGFLRE  236 (382)
Q Consensus       205 ~------------------------------------------------l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~  236 (382)
                      .                                                +..+ .+++.++++.|.+.+..+..+..+++
T Consensus       392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~  470 (635)
T 4g8a_A          392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSS  470 (635)
T ss_dssp             HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc-cccccccccccccccccccccccchh
Confidence            0                                                0001 23344555666677677888899999


Q ss_pred             CCccccCCccC-CCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561          237 ARVFDASNNRL-TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN  314 (382)
Q Consensus       237 L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~  314 (382)
                      |+.|++++|.+ .+..|..|..+++|++|++++|+|++..|.+|..+++|++|+|++|+|+++++ .+..+++|+.|+|+
T Consensus       471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            99999999975 44578889999999999999999999889999999999999999999999876 57899999999999


Q ss_pred             CCCCCCCCCc-c----cccchhhhccCCCCCC
Q 048561          315 RNCIHYLPDQ-R----STHECALFFLQPRFCF  341 (382)
Q Consensus       315 ~N~l~~lp~~-~----~~~~~~~~~~np~~c~  341 (382)
                      +|+|+++++. +    ..+..+.+.+||+.|+
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999998653 2    2456677889999998

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.1e-26  Score=213.42  Aligned_cols=219  Identities=16%  Similarity=0.112  Sum_probs=178.7

Q ss_pred             CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC
Q 048561           95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN  173 (382)
Q Consensus        95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n  173 (382)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            67888888888 566544  47899999999999976667889999999999999999865566555 899999999999


Q ss_pred             c-CCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCC
Q 048561          174 N-FMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL  251 (382)
Q Consensus       174 ~-l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  251 (382)
                      . +....+..+.. .+|++|++++                         |.+.+..+..+..+++|++|++++|.+++..
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~-------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  145 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDR-------------------------CGLQELGPGLFRGLAALQYLYLQDNALQALP  145 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTT-------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccccCHHHhcCCcCCCEEECCC-------------------------CcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence            7 65544555544 4455555554                         4444455667888999999999999999777


Q ss_pred             CcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----cc
Q 048561          252 PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ----RS  326 (382)
Q Consensus       252 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~  326 (382)
                      +..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.|++++|.++++|..    ..
T Consensus       146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            7778999999999999999997766779999999999999999999754 788999999999999999998853    34


Q ss_pred             ccchhhhccCCCCCC
Q 048561          327 THECALFFLQPRFCF  341 (382)
Q Consensus       327 ~~~~~~~~~np~~c~  341 (382)
                      .+..+.+.+|++.|.
T Consensus       226 ~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             ccCEEeccCCCccCC
Confidence            566677889999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.4e-27  Score=225.98  Aligned_cols=265  Identities=16%  Similarity=0.124  Sum_probs=215.4

Q ss_pred             EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561           71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN  150 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  150 (382)
                      ..+.++++++.  +|..+  .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        35 ~c~~~~~~l~~--iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           35 ICKGSSGSLNS--IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             EEECCSTTCSS--CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeeCCCCCccc--ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            37889999987  33333  358999999999999776668999999999999999999777888999999999999999


Q ss_pred             CCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCcc-cccccchhHHHhhhhHHHHHhhccccCC
Q 048561          151 FFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNK-FTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       151 ~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~-l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      .++ .++.. +. +++|++|++++|.+++..+ ..+.. .+|++|++++|. +....+..+..+ ++|+.|++++|.+.+
T Consensus       111 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQS  188 (353)
T ss_dssp             CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCE
T ss_pred             cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCc
Confidence            999 56654 44 8999999999999985444 35655 889999999994 664445667776 789999999999998


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc---CCCCCCEEEcccccCcc-----
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC---ALDNLVNLSLSNNYFTG-----  297 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~-----  297 (382)
                      ..+..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+.   ....++.++++++.+++     
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence            8899999999999999999998743333344578999999999999865544332   35678899999988876     


Q ss_pred             cCCcccCCCCCCEEEccCCCCCCCCCcc----cccchhhhccCCCCCC
Q 048561          298 VGPLCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFLQPRFCF  341 (382)
Q Consensus       298 ~~~~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~np~~c~  341 (382)
                      ++..+..+++|+.|++++|.|+.+|+..    ..+..+.+.+|++.|.
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            3345788999999999999999998753    3556677889999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.6e-26  Score=216.55  Aligned_cols=241  Identities=24%  Similarity=0.322  Sum_probs=202.5

Q ss_pred             cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561           65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF  144 (382)
Q Consensus        65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  144 (382)
                      ...+++.|++++|.+.+  + ..+.++++|++|++++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++
T Consensus        86 ~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~  159 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY  159 (347)
T ss_dssp             TCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred             cCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence            35689999999999987  3 358999999999999999985 444 8999999999999997664444 4899999999


Q ss_pred             EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      |++++|.+. .++....+++|++|++++|.+.+..+  +.. .+++++++++|.+.+..+  +..+ ++|+.|++++|.+
T Consensus       160 L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCC
T ss_pred             EEecCCCcC-CchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCcc
Confidence            999999998 55554458999999999999875443  333 789999999999985433  5555 7899999999999


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC  302 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~  302 (382)
                      ++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ .+
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence            86544  8899999999999999985 3 468889999999999999985 4 457889999999999999998665 57


Q ss_pred             cCCCCCCEEEccCCCCCCCCC
Q 048561          303 RKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       303 ~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      ..+++|+.|++++|.++++++
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG
T ss_pred             hccccCCEEEccCCccccccC
Confidence            889999999999999999865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=231.76  Aligned_cols=251  Identities=17%  Similarity=0.092  Sum_probs=157.6

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|++++|++.+ +.+..|.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57777777777776 34556777777777777777777666667777777777777777777555667777777777777


Q ss_pred             cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccchhHHHhhhhH----HHHHhh
Q 048561          148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTL----IEVLFL  219 (382)
Q Consensus       148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L----~~L~l~  219 (382)
                      ++|.++ .++. .+. +++|++|++++|.+++ .+|..++. .+|++|++++|.+++..+..+..+ .+|    ..++++
T Consensus       108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~~~~~L~l~  185 (570)
T 2z63_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLS  185 (570)
T ss_dssp             TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH-HTCTTCCCEEECT
T ss_pred             cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch-hccchhhhhcccC
Confidence            777776 3433 233 6777777777777765 35666665 667777777777665545555544 333    334444


Q ss_pred             ccccCCC-------------------------------------------------------------------------
Q 048561          220 NNLLTGC-------------------------------------------------------------------------  226 (382)
Q Consensus       220 ~n~l~~~-------------------------------------------------------------------------  226 (382)
                      +|.+.+.                                                                         
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  265 (570)
T 2z63_A          186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  265 (570)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred             CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence            4433221                                                                         


Q ss_pred             --------CchhcccCcCCCccccCCccCCCCCCcCC------------------------------------------C
Q 048561          227 --------LPYELGFLREARVFDASNNRLTGPLPCSL------------------------------------------G  256 (382)
Q Consensus       227 --------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~------------------------------------------~  256 (382)
                              .+..+..+++|+.|++++|.++ .+|..+                                          .
T Consensus       266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~  344 (570)
T 2z63_A          266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  344 (570)
T ss_dssp             ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred             cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence                    2223334455555555555554 233332                                          2


Q ss_pred             CCCCCCEEeCcCCcCcccC--chhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561          257 CLEKIERLNLSGNLLYGQV--PEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       257 ~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .+++|++|++++|.+++..  +..+..+++|++|++++|.+++.++.+..+++|+.|++++|.+++++
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~  412 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS  412 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc
Confidence            3456666666666665432  55566667777777777777666555667777777777777776653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=2.1e-25  Score=203.25  Aligned_cols=217  Identities=22%  Similarity=0.194  Sum_probs=164.1

Q ss_pred             CCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC
Q 048561           47 SDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN  126 (382)
Q Consensus        47 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n  126 (382)
                      .+.|.|.|+.|....      ..+.+++++++++.  ++..+.  ++++.|++++|.+++..+..|..+++|++|++++|
T Consensus         2 ~~~C~~~~~~C~c~~------~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   71 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN------NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN   71 (270)
T ss_dssp             CCCBGGGTCSBEEET------TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred             CccCCCCCCCCEeCC------CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence            468999999997543      46789999999986  333332  67999999999999766678999999999999999


Q ss_pred             CCCccCcccccCCCCCcEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccch
Q 048561          127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPR  204 (382)
Q Consensus       127 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~  204 (382)
                      .++...+..|..+++|++|++++|.++ .++.. +. +++|++|++++|.+++..                         
T Consensus        72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------  125 (270)
T 2o6q_A           72 KLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-------------------------  125 (270)
T ss_dssp             CCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCC-------------------------
T ss_pred             ccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeC-------------------------
Confidence            998554555678999999999999998 45443 33 788888888888765322                         


Q ss_pred             hHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561          205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN  284 (382)
Q Consensus       205 ~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  284 (382)
                                             +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus       126 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          126 -----------------------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE  182 (270)
T ss_dssp             -----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -----------------------HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence                                   223456677788888888877655556777788888888888887665666777788


Q ss_pred             CCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCC
Q 048561          285 LVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       285 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      |++|+|++|+++++++ .+..+++|+.|++++|.+..-.
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            8888888888887665 3677788888888888876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.2e-25  Score=212.00  Aligned_cols=238  Identities=19%  Similarity=0.274  Sum_probs=161.1

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ..+++.|++++|.+.+  .+. +.++++|++|++++|.++. + +.+..+++|++|++++|.++ .++. +..+++|++|
T Consensus        65 ~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSL  137 (347)
T ss_dssp             CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEE
T ss_pred             cCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hccCCceeEE
Confidence            4467777777777765  222 6777777777777777763 3 35777777777777777776 3333 6677777777


Q ss_pred             EecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++++|.....++....+++|++|++++|.+.+..+  +.. .+|++|++++|.+. .++. +..+ ++|+.+++++|.+.
T Consensus       138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l-~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASL-TSLHYFTAYVNQIT  212 (347)
T ss_dssp             ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGC-TTCCEEECCSSCCC
T ss_pred             ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCC-CccceeecccCCCC
Confidence            77777555455443336777777777777654433  333 66777777777776 3333 4444 66777777777776


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK  304 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  304 (382)
                      +..+  +..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + ..+..+++|++|++++|+++++ +.+..
T Consensus       213 ~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~  285 (347)
T 4fmz_A          213 DITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNN  285 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGG
T ss_pred             CCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcC
Confidence            4433  67777888888888877743 33 6677788888888887774 3 3567777888888888877775 45677


Q ss_pred             CCCCCEEEccCCCCCCCC
Q 048561          305 LIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp  322 (382)
                      +++|+.|++++|.+++.+
T Consensus       286 l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             CTTCSEEECCSSCCCGGG
T ss_pred             CCCCCEEECcCCcCCCcC
Confidence            778888888888777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.1e-27  Score=233.12  Aligned_cols=216  Identities=19%  Similarity=0.106  Sum_probs=162.1

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCC
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLN  171 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~  171 (382)
                      ++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|  +..+++|++|+|++|.++ .++.   .++|++|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~---~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV---GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE---CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC---CCCcCEEECc
Confidence            367777777777776656667777777777777777764443  666777777777777666 2222   2667777777


Q ss_pred             CCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcc-cCcCCCccccCCccCCCC
Q 048561          172 NNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELG-FLREARVFDASNNRLTGP  250 (382)
Q Consensus       172 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~  250 (382)
                      +|.+++..+..+  .+|++|++++|.+++..|..+..+ ++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus       108 ~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            777765544432  456677777777776666666665 6778888888888777777765 789999999999999855


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCC
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIH  319 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~  319 (382)
                       +. +..+++|+.|++++|.|++. |..+..+++|+.|+|++|.|+++++.+..+++|+.|++++|.+.
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence             32 34689999999999999965 44588899999999999999998888889999999999999998

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=2.8e-25  Score=218.07  Aligned_cols=235  Identities=25%  Similarity=0.316  Sum_probs=120.1

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ..+++.|++++|.+.+ . +. +.++++|++|++++|.+++..+  ++.+++|++|++++|.+++. +. +..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTD-I-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCCC-C-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred             hcCCCEEECCCCccCC-c-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence            4567788888887776 2 22 6777777777777777764333  67777777777777777633 32 5666666666


Q ss_pred             EecCCCCCCCCCc---------------------ccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561          146 DIRFNFFTGSVPP---------------------QVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       146 ~Ls~n~l~~~~p~---------------------~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      ++++|.+.+ ++.                     ...+++|++|++++|.+.+. +. +.. .+|++|++++|.+.+..+
T Consensus       140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SV-LAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECCSSCCCCCGG
T ss_pred             ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hh-hccCCCCCEEEecCCccccccc
Confidence            666666552 221                     11145566666666665432 21 222 455555555555553332


Q ss_pred             hhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC
Q 048561          204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD  283 (382)
Q Consensus       204 ~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  283 (382)
                        +..+ ++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..+  +..++
T Consensus       217 --~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~  287 (466)
T 1o6v_A          217 --LGIL-TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT  287 (466)
T ss_dssp             --GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             --cccc-CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence              2322 4455555555554432  234444455555555554443222  3444444444444444442211  33444


Q ss_pred             CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +|+.|++++|++++.++ +..+++|+.|++++|.+++
T Consensus       288 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          288 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred             ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence            44444444444443322 3334444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=4.9e-25  Score=216.37  Aligned_cols=239  Identities=24%  Similarity=0.325  Sum_probs=200.2

Q ss_pred             cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc----------
Q 048561           65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV----------  134 (382)
Q Consensus        65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----------  134 (382)
                      ...+++.|++++|.+.+ . +. ++++++|++|++++|.+++. +. +..+++|++|++++|.+++ ++.          
T Consensus        88 ~l~~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L  161 (466)
T 1o6v_A           88 NLTKLVDILMNNNQIAD-I-TP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQL  161 (466)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEE
T ss_pred             ccccCCEEECCCCcccc-C-hh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEe
Confidence            35689999999999987 3 33 89999999999999999854 43 8999999999999998874 221          


Q ss_pred             ----------cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561          135 ----------AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       135 ----------~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                                .+..+++|++|++++|.++ .++....+++|++|++++|.+.+..+  ++. .+|++|++++|.+.+ ++
T Consensus       162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~  237 (466)
T 1o6v_A          162 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG  237 (466)
T ss_dssp             EEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG
T ss_pred             ecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch
Confidence                      2567788999999999988 55554458999999999999987655  333 789999999999884 43


Q ss_pred             hhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC
Q 048561          204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD  283 (382)
Q Consensus       204 ~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  283 (382)
                       .+..+ ++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..++
T Consensus       238 -~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~  309 (466)
T 1o6v_A          238 -TLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK  309 (466)
T ss_dssp             -GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             -hhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence             46666 789999999999986554  8899999999999999996443  7889999999999999996544  78899


Q ss_pred             CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561          284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      +|+.|++++|++++..+ +..+++|+.|++++|.+++++
T Consensus       310 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence            99999999999998766 788999999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.2e-24  Score=211.02  Aligned_cols=228  Identities=19%  Similarity=0.165  Sum_probs=172.0

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+.+ . + .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++ ++  +..+++|++|+
T Consensus        42 ~~L~~L~Ls~n~l~~-~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSITD-M-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCCC-C-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCccc-C-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence            368888888888887 2 3 478888888888888888853 3  7888888888888888885 33  77888888888


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++|.+++ ++ ...+++|++|++++|.+++. +  ++. .+|++|++++|...+.+  .+..+ ++|+.|++++|.+++
T Consensus       113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQ-TQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTC-TTCCEEECCSSCCCC
T ss_pred             CCCCcCCe-ec-CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccC-CcCCEEECCCCccce
Confidence            88888884 54 33378888888888888764 2  444 67888888888655455  24555 678888888888876


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCC
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKL  305 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l  305 (382)
                       ++  +..+++|+.|++++|.+++.   .++.+++|++|++++|++++ +|  +..+++|+.|++++|++++.+  ...+
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l  253 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTL  253 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred             -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHC
Confidence             33  67788888888888888854   37778888888888888885 55  677788888888888888765  3466


Q ss_pred             CCCCEEEccCCCCCCCC
Q 048561          306 IKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       306 ~~L~~L~L~~N~l~~lp  322 (382)
                      ++|+.|++++|.++.+.
T Consensus       254 ~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          254 SKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             TTCCEEECTTCCCSCCC
T ss_pred             CCCCEEeccCCCCCEEE
Confidence            77777777777776653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.7e-27  Score=220.84  Aligned_cols=236  Identities=19%  Similarity=0.188  Sum_probs=199.2

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|++.+ ..+..|.++++|++|++++|.+++..+  +..+++|++|++++|.+++ ++    ..++|++|+
T Consensus        34 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred             CCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence            379999999999998 566789999999999999999986554  8999999999999999983 33    348999999


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++|.+++..+.  .+++|++|++++|.+++..+..+.. .+|++|++++|.+++..+..+....++|++|++++|.+++
T Consensus       106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            999999843322  2688999999999999887777776 8899999999999977777765333789999999999986


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCc-c-cCCccc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT-G-VGPLCR  303 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~-~~~~~~  303 (382)
                      . + ....+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ + .+..+.
T Consensus       184 ~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          184 V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             c-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            5 2 33458999999999999995 5556889999999999999999 67888999999999999999998 3 334567


Q ss_pred             CCCCCCEEEccCC
Q 048561          304 KLIKNGVLDVNRN  316 (382)
Q Consensus       304 ~l~~L~~L~L~~N  316 (382)
                      .+++|+.++++++
T Consensus       260 ~~~~L~~l~l~~~  272 (317)
T 3o53_A          260 KNQRVQTVAKQTV  272 (317)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccccceEEECCCc
Confidence            8888888888843

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.4e-27  Score=218.98  Aligned_cols=225  Identities=21%  Similarity=0.192  Sum_probs=185.9

Q ss_pred             ceeEEEcCCCCCCCCCCccccC-------CCCCCCEEEcCCCcCcccCCccc--CCCCCCCEEEeecCCCCccCcccccC
Q 048561           68 ALASIDFNGFELAAPTLDGFID-------QLPDLSLFHANSNKFSGTISPKL--AQLPYLYELDISNNKFSGTFPVAILG  138 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~  138 (382)
                      .++.|++++|.+.....+..+.       ++++|++|++++|.+++.+|..+  +.+++|++|+|++|++++. |..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            3778899999885423444444       79999999999999999999887  8999999999999999966 877777


Q ss_pred             C-----CCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc--CCcCC--CC-CcchhhhccCccccc--ccchh
Q 048561          139 K-----NDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK--LPQNL--GS-TPALYLTFANNKFTG--SIPRS  205 (382)
Q Consensus       139 l-----~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~--~p~~~--~~-~~L~~L~l~~n~l~~--~lp~~  205 (382)
                      +     ++|++|++++|.+.+..+..+. +++|++|++++|.+.+.  .+..+  .. .+|++|++++|.+++  .++..
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence            6     9999999999999966656665 89999999999998765  23333  33 789999999999983  23333


Q ss_pred             HHHhhhhHHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561          206 IGKLSSTLIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN  284 (382)
Q Consensus       206 l~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  284 (382)
                      +....++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|+|++. |. +..+++
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            33223789999999999998775 45677899999999999999 7888776  8999999999999955 66 889999


Q ss_pred             CCEEEcccccCccc
Q 048561          285 LVNLSLSNNYFTGV  298 (382)
Q Consensus       285 L~~L~L~~N~l~~~  298 (382)
                      |++|++++|+|++.
T Consensus       298 L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          298 VGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEECTTCTTTCC
T ss_pred             CCEEeccCCCCCCC
Confidence            99999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9.2e-25  Score=201.16  Aligned_cols=203  Identities=19%  Similarity=0.121  Sum_probs=119.0

Q ss_pred             cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCE
Q 048561           88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV  167 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~  167 (382)
                      ++++++++.+++++++++ .+|..+.  +++++|+|++|.+++..+..|..+++|++|++++|.++ .++....+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence            344555555555555555 3443332  45555555555555444445555555555555555555 3333333455555


Q ss_pred             EeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561          168 LFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR  246 (382)
Q Consensus       168 L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  246 (382)
                      |++++|.++ .+|..+.. .+|++|++++|++                         ++..+..|..+++|++|++++|.
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l-------------------------~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-------------------------TSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCC-------------------------CCCCSSTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcC-------------------------cccCHHHHcCCCCCCEEECCCCC
Confidence            555555543 22322222 2233333333332                         22334456667778888888888


Q ss_pred             CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +++..+..|..+++|+.|++++|+|++..+..+..+++|+.|+|++|+|+.++..+....+|+.|+|++|.+..
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            77666666777778888888888887555555667778888888888887777767677778888888887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.6e-26  Score=226.58  Aligned_cols=234  Identities=18%  Similarity=0.179  Sum_probs=198.5

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+|+.|+|++|.+.+ ..+..|+++++|++|++++|.+++..|  ++.+++|++|+|++|.+++ ++    ..++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred             CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence            379999999999998 567789999999999999999997665  9999999999999999984 33    238999999


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++|.+++..+.  .+++|+.|++++|.+++..|..++. .+|++|++++|.+++..|..+....++|+.|++++|.+++
T Consensus       106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            999999954332  3689999999999999988888876 8899999999999988888887323899999999999986


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc--cCCccc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG--VGPLCR  303 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~  303 (382)
                      ..  .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.|+ .+|..+..+++|+.|++++|.+.+  .+..+.
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            63  34469999999999999996 4555889999999999999999 478889999999999999999983  333566


Q ss_pred             CCCCCCEEEcc
Q 048561          304 KLIKNGVLDVN  314 (382)
Q Consensus       304 ~l~~L~~L~L~  314 (382)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            67777666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=1.2e-25  Score=219.81  Aligned_cols=249  Identities=22%  Similarity=0.218  Sum_probs=121.5

Q ss_pred             CCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCC-------------CEEEeecCCCC
Q 048561           63 NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL-------------YELDISNNKFS  129 (382)
Q Consensus        63 ~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~  129 (382)
                      .+....++.|++++|.+ + .+|..++++++|++|++++|.+.+.+|..++++++|             ++|++++|.++
T Consensus         7 ~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~   84 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS   84 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred             ccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence            34455788888888888 4 356668888888888888888888888877776653             67777777666


Q ss_pred             ccCcccccCCCCCcEEEecCCCCCCCCCccc------------------ccCCCCEEeCCCCcCCCcCCcCCCC-Ccchh
Q 048561          130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQV------------------FMQTLDVLFLNNNNFMQKLPQNLGS-TPALY  190 (382)
Q Consensus       130 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~------------------~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~  190 (382)
                      + +|..   .++|++|++++|.+++ +|...                  ..++|++|++++|.+++ +|. ++. .+|++
T Consensus        85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~-~~~l~~L~~  157 (454)
T 1jl5_A           85 S-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKI  157 (454)
T ss_dssp             C-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCC-CTTCTTCCE
T ss_pred             c-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Ccc-cCCCCCCCE
Confidence            3 3331   2456666666666553 44321                  01345555555555543 332 333 45555


Q ss_pred             hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCc
Q 048561          191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL  270 (382)
Q Consensus       191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  270 (382)
                      |++++|++++ +|..+    .+|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|...   ++|++|++++|.
T Consensus       158 L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~  226 (454)
T 1jl5_A          158 IDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI  226 (454)
T ss_dssp             EECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred             EECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc
Confidence            5555555552 33321    245555555555554 33 35555556666666665553 33221   355666666666


Q ss_pred             CcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCcccccchhhhccC
Q 048561          271 LYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQ  336 (382)
Q Consensus       271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~n  336 (382)
                      +. .+|. +..+++|++|++++|++++++..   +++|+.|++++|.++++|+....+..+.+.+|
T Consensus       227 l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          227 LE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             CC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence            65 4453 55666666666666666654432   24566666666666666554433333333333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.7e-24  Score=210.38  Aligned_cols=236  Identities=20%  Similarity=0.168  Sum_probs=155.1

Q ss_pred             cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561           65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF  144 (382)
Q Consensus        65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  144 (382)
                      ...+++.|++++|.+.+.  +  ++++++|++|++++|.+++ ++  ++.+++|++|++++|++++ ++  +..+++|++
T Consensus        83 ~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~  152 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTE  152 (457)
T ss_dssp             TCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCE
T ss_pred             cCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCE
Confidence            356789999999998872  2  7888999999999998885 44  7888899999999998885 33  666777777


Q ss_pred             EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      |++++|...+.++ ...+++|++|++++|.+++. |  +.. .+|++|++++|.+++.   .+..+ ++|+.|++++|.+
T Consensus       153 L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          153 LDCHLNKKITKLD-VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKL  224 (457)
T ss_dssp             EECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCC
T ss_pred             EECCCCCcccccc-cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcc
Confidence            7777775444442 22256666666666666552 2  222 4555555555555532   13333 4555555555555


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcC-----------------------------CCCCCCCCEEeCcCCcCccc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCS-----------------------------LGCLEKIERLNLSGNLLYGQ  274 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-----------------------------~~~l~~L~~L~L~~N~l~~~  274 (382)
                      ++ +|  +..+++|++|++++|.+++..+..                             ++.+++|+.|++++|.+.+.
T Consensus       225 ~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~  301 (457)
T 3bz5_A          225 TE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL  301 (457)
T ss_dssp             SC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCE
T ss_pred             cc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccce
Confidence            54 23  445555555555555555432222                             23446666777777665544


Q ss_pred             Cch--------hhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561          275 VPE--------VLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       275 ~p~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +|.        .+..+++|++|++++|+++++  .+..+++|+.|++++|+|++++.
T Consensus       302 l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~l~~  356 (457)
T 3bz5_A          302 LDCQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS  356 (457)
T ss_dssp             EECTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBCTT
T ss_pred             eccCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCCccc
Confidence            443        244567888899999999886  37888899999999999988764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.4e-24  Score=198.32  Aligned_cols=204  Identities=19%  Similarity=0.100  Sum_probs=106.4

Q ss_pred             CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCC
Q 048561           93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLN  171 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~  171 (382)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            455555555555544333455555555555555555433333444555555555555555433223222 4455555555


Q ss_pred             CCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561          172 NNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP  250 (382)
Q Consensus       172 ~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  250 (382)
                      +|.+.+..+..+.. .+|++|++++|.+.+.                        .+|..+..+++|++|++++|.+++.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCccccCchhcccCCCCCEEECcCCcccee------------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence            55544333323322 3333333333333310                        1244455566666666666666654


Q ss_pred             CCcCCCCCCCCC----EEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCc-ccCCCCCCEEEccCCCCCCC
Q 048561          251 LPCSLGCLEKIE----RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       251 ~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~l  321 (382)
                      .+..+..+.+|+    +|++++|.+.+..+..+ ...+|++|++++|+++++++. +..+++|+.|++++|+++.-
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            444554444444    67777777764433333 334677777777777766553 46677777777777777753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=4.6e-25  Score=222.76  Aligned_cols=220  Identities=28%  Similarity=0.313  Sum_probs=106.5

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      ++.|++++++++.  ++..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|+++ .+|.   .+++|++|+++
T Consensus        42 l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4555555555553  222222  45555555555555 3333   3455555555555555 3333   34555555555


Q ss_pred             CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCC------------------CCCcchhhhccCcccccccchhHHHhh
Q 048561          149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL------------------GSTPALYLTFANNKFTGSIPRSIGKLS  210 (382)
Q Consensus       149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~------------------~~~~L~~L~l~~n~l~~~lp~~l~~l~  210 (382)
                      +|.++ .+|.  .+++|+.|++++|.+++ +|..+                  ...+++.|++++|.++ .+|.    ..
T Consensus       110 ~N~l~-~l~~--~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~----~~  180 (622)
T 3g06_A          110 SNPLT-HLPA--LPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPM----LP  180 (622)
T ss_dssp             SCCCC-CCCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CC
T ss_pred             CCcCC-CCCC--CCCCcCEEECCCCCCCc-CCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC-CCcc----cC
Confidence            55554 3333  23444444444444432 22211                  0123444555555544 2331    12


Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEc
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL  290 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  290 (382)
                      ++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|..   +++|+.|++++|.|++ +|   ..+++|+.|+|
T Consensus       181 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L  248 (622)
T 3g06_A          181 SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV  248 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence            455666666666653 221   1234444444444444 23321   2456666666666653 34   23455666666


Q ss_pred             ccccCcccCCcccCCCCCCEEEccCCCCCCCCCc
Q 048561          291 SNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       291 ~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  324 (382)
                      ++|+|++++.   .+++|+.|+|++|.|+.+|+.
T Consensus       249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~  279 (622)
T 3g06_A          249 SGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES  279 (622)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG
T ss_pred             CCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH
Confidence            6666665443   445566666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=2.2e-24  Score=200.44  Aligned_cols=200  Identities=21%  Similarity=0.106  Sum_probs=125.0

Q ss_pred             CCCCEEEeecCCCCccCcccc--cCCCCCcEEEecCCCCCCCCCcc-----cccCCCCEEeCCCCcCCCcCCcCCCC-Cc
Q 048561          116 PYLYELDISNNKFSGTFPVAI--LGKNDLSFLDIRFNFFTGSVPPQ-----VFMQTLDVLFLNNNNFMQKLPQNLGS-TP  187 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-----~~l~~L~~L~L~~n~l~~~~p~~~~~-~~  187 (382)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+..     ..+++|++|++++|.+++..+..+.. .+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555554444444  44555555555555555333211     11445555555555554444444443 44


Q ss_pred             chhhhccCcccccc--cc--hhHHHhhhhHHHHHhhccccCCCC--ch-hcccCcCCCccccCCccCCCCCCcCCCCC--
Q 048561          188 ALYLTFANNKFTGS--IP--RSIGKLSSTLIEVLFLNNLLTGCL--PY-ELGFLREARVFDASNNRLTGPLPCSLGCL--  258 (382)
Q Consensus       188 L~~L~l~~n~l~~~--lp--~~l~~l~~~L~~L~l~~n~l~~~~--~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l--  258 (382)
                      |++|++++|++.+.  ++  ..+..+ ++|++|++++|.++...  +. .+..+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            55555555544321  11  111222 44555555555554211  11 24678899999999999998778777766  


Q ss_pred             -CCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          259 -EKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       259 -~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                       ++|++|++++|+|+ .+|..+.  ++|++|+|++|+|++++ .+..+++|+.|+|++|+|+.
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP-QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC-CTTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc-hhhhCCCccEEECcCCCCCC
Confidence             69999999999999 6777664  79999999999999873 46788999999999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=5.9e-24  Score=194.14  Aligned_cols=210  Identities=17%  Similarity=0.109  Sum_probs=167.9

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|++.+ ..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            469999999999997 4555799999999999999999977777899999999999999999977778899999999999


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc-CCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK-LPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~-~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      +++|.+.+..+..+. +++|++|++++|.+++. +|..+.. .+|++|++++|++++..+..+..+              
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------  172 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL--------------  172 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH--------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh--------------
Confidence            999999954443444 89999999999999873 5777766 678888888888774433333332              


Q ss_pred             CCCCchhcccCcCCC-ccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561          224 TGCLPYELGFLREAR-VFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  300 (382)
                              ..++.|. .|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus       173 --------~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          173 --------HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             --------HTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             --------hhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                    1222233 78899999985545444 44589999999999996666667889999999999999987543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=1.5e-23  Score=204.90  Aligned_cols=77  Identities=19%  Similarity=0.344  Sum_probs=33.8

Q ss_pred             CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC
Q 048561           93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN  172 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~  172 (382)
                      +|++|++++|.+++ +| +++.+++|++|++++|++++ +|..+   .+|++|++++|.+++ +|....+++|++|++++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADN  204 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCC
Confidence            44455555554442 33 34445555555555554442 33221   244444444444442 33222244444444444


Q ss_pred             CcCC
Q 048561          173 NNFM  176 (382)
Q Consensus       173 n~l~  176 (382)
                      |.++
T Consensus       205 N~l~  208 (454)
T 1jl5_A          205 NSLK  208 (454)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            4443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-22  Score=185.33  Aligned_cols=198  Identities=21%  Similarity=0.237  Sum_probs=161.3

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEe
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLF  169 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~  169 (382)
                      ...+.++++++.++ .+|..+.  ++|++|+|++|.+++..+..|..+++|++|++++|.++ .++... . +++|++|+
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            35778899988888 5676554  67899999999988665567888899999999999888 555543 3 77888888


Q ss_pred             CCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC
Q 048561          170 LNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG  249 (382)
Q Consensus       170 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  249 (382)
                      +++|.+++.                                                .+..+..+++|++|++++|.+++
T Consensus        92 l~~n~l~~~------------------------------------------------~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           92 VTDNKLQAL------------------------------------------------PIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CCSSCCCCC------------------------------------------------CTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCcC------------------------------------------------CHhHcccccCCCEEECCCCccCe
Confidence            887765421                                                12235667889999999999998


Q ss_pred             CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----
Q 048561          250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ----  324 (382)
Q Consensus       250 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----  324 (382)
                      ..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++++++ .+..+++|+.|++++|.|+++|+.    
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            878888999999999999999997666678999999999999999999876 478899999999999999999864    


Q ss_pred             ccccchhhhccCCCCCC
Q 048561          325 RSTHECALFFLQPRFCF  341 (382)
Q Consensus       325 ~~~~~~~~~~~np~~c~  341 (382)
                      ...+..+.+.+||+.|.
T Consensus       204 l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTCCEEECCSSCBCCS
T ss_pred             ccCCCEEEecCCCeeCC
Confidence            23556677889999987

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.7e-22  Score=181.88  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=136.1

Q ss_pred             CCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC
Q 048561           48 DICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK  127 (382)
Q Consensus        48 ~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  127 (382)
                      ++|.|.|..|..        ..+.++++++.+..  ++..+.  ++++.|++++|.+++..+..|..+++|++|+|++|.
T Consensus         3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   70 (251)
T 3m19_A            3 TCETVTGCTCNE--------GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ   70 (251)
T ss_dssp             -CHHHHSSEEEG--------GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cCCCCCceEcCC--------CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence            456899999953        46788999999886  333333  688999999999988777788899999999999999


Q ss_pred             CCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhH
Q 048561          128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI  206 (382)
Q Consensus       128 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l  206 (382)
                      +++..+..+..+++|++|++++|.+++..+..+. +++|++|++++|.+++..                           
T Consensus        71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------  123 (251)
T 3m19_A           71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP---------------------------  123 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------------
T ss_pred             CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC---------------------------
Confidence            9877777788889999999999988843333333 677777777777654221                           


Q ss_pred             HHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCC
Q 048561          207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV  286 (382)
Q Consensus       207 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  286 (382)
                                           +..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..+..+++|+
T Consensus       124 ---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          124 ---------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             ---------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence                                 12234556677777777777655555666667777777777777655555666666777


Q ss_pred             EEEcccccCccc
Q 048561          287 NLSLSNNYFTGV  298 (382)
Q Consensus       287 ~L~L~~N~l~~~  298 (382)
                      .|+|++|.+++.
T Consensus       183 ~L~l~~N~~~c~  194 (251)
T 3m19_A          183 TITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSCCBCTT
T ss_pred             EEEeeCCceeCC
Confidence            777777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.9e-22  Score=182.33  Aligned_cols=198  Identities=20%  Similarity=0.158  Sum_probs=163.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.+++++++++. + +..+  .++++.|++++|.+++..+..|..+++|++|+|++|.+++ ++.. ..+++|++|++
T Consensus        11 ~l~~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-L-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             TCCEEECTTSCCSS-C-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred             CccEEECCCCCCCc-C-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence            68899999999987 3 3333  2689999999999998888899999999999999999984 4443 78999999999


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      ++|.++ .+|..+. +++|++|++++|.+++..+..+.. .+|++|++++|+++                         +
T Consensus        85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------------~  138 (290)
T 1p9a_G           85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------------T  138 (290)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------------C
T ss_pred             CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------------------------c
Confidence            999998 7887665 899999999999998777666665 56666666666655                         3


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      ..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.|+ .+|..+....+|+.|+|++|.+...
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            33445677889999999999999666666788999999999999998 7788888888999999999988753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=2.1e-22  Score=203.33  Aligned_cols=221  Identities=26%  Similarity=0.303  Sum_probs=160.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|+++.  ++.   .+++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|+
T Consensus        61 ~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence            467888888888875  232   4678888888888877 4554   5677777777777776 3443   334555555


Q ss_pred             ecCCCCCCCCCccc------------------ccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHH
Q 048561          147 IRFNFFTGSVPPQV------------------FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGK  208 (382)
Q Consensus       147 Ls~n~l~~~~p~~~------------------~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~  208 (382)
                      +++|.++ .+|...                  ...+|+.|++++|.+++ +|.  ...+|++|++++|.++ .+|..+  
T Consensus       128 L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~-~l~~~~--  200 (622)
T 3g06_A          128 IFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLA-SLPTLP--  200 (622)
T ss_dssp             CCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCCCC--
T ss_pred             CCCCCCC-cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCC-CCCCcc--
Confidence            5555554 333321                  12345555555555443 231  1267899999999998 455432  


Q ss_pred             hhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEE
Q 048561          209 LSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL  288 (382)
Q Consensus       209 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  288 (382)
                        .+|+.|++++|.++. +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.|+ .+|.   .+++|+.|
T Consensus       201 --~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L  266 (622)
T 3g06_A          201 --SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL  266 (622)
T ss_dssp             --TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             --chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence              578889999999884 443   35889999999999995 56   45689999999999999 5666   56899999


Q ss_pred             EcccccCcccCCcccCCCCCCEEEccCCCCCCC
Q 048561          289 SLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       289 ~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l  321 (382)
                      +|++|+|+.++..+..+++|+.|+|++|.|++.
T Consensus       267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence            999999998877899999999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1e-24  Score=207.16  Aligned_cols=249  Identities=17%  Similarity=0.162  Sum_probs=185.0

Q ss_pred             EEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCC----cccCCCC-CCCEEEeecCCCCccCcccccCC-----CC
Q 048561           72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTIS----PKLAQLP-YLYELDISNNKFSGTFPVAILGK-----ND  141 (382)
Q Consensus        72 L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~  141 (382)
                      .+++.+++++ .++..+....+|++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5677888887 455656666679999999998886655    6677888 89999999998886666666554     88


Q ss_pred             CcEEEecCCCCCCCCCcccc-----c-CCCCEEeCCCCcCCCcCCcCCC----C--CcchhhhccCcccccccchhH---
Q 048561          142 LSFLDIRFNFFTGSVPPQVF-----M-QTLDVLFLNNNNFMQKLPQNLG----S--TPALYLTFANNKFTGSIPRSI---  206 (382)
Q Consensus       142 L~~L~Ls~n~l~~~~p~~~~-----l-~~L~~L~L~~n~l~~~~p~~~~----~--~~L~~L~l~~n~l~~~lp~~l---  206 (382)
                      |++|+|++|.+++..+..+.     . ++|++|++++|.+++..+..+.    .  .+|++|++++|.+++.....+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            99999999998865555333     2 6899999999988765554432    2  478889999998885444443   


Q ss_pred             -HHhhhhHHHHHhhccccCCCCchhcc----cC-cCCCccccCCccCCCC----CCcCCCC-CCCCCEEeCcCCcCcccC
Q 048561          207 -GKLSSTLIEVLFLNNLLTGCLPYELG----FL-REARVFDASNNRLTGP----LPCSLGC-LEKIERLNLSGNLLYGQV  275 (382)
Q Consensus       207 -~~l~~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~  275 (382)
                       .....+|++|++++|.+++..+..+.    .. ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence             33323788999999998877665444    44 6999999999999853    3344444 358999999999998654


Q ss_pred             c----hhhcCCCCCCEEEcccccCcccC--------CcccCCCCCCEEEccCCCCCCC
Q 048561          276 P----EVLCALDNLVNLSLSNNYFTGVG--------PLCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       276 p----~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~L~~L~L~~N~l~~l  321 (382)
                      +    ..+..+++|++|+|++|.+.++.        ..+..+++|+.||+++|.+...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            4    34567789999999999954432        3467888899999999998764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=5.5e-23  Score=190.92  Aligned_cols=194  Identities=23%  Similarity=0.342  Sum_probs=117.2

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|+++++.+..  ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence            356777777776665  22 356677777777777776643 33 6667777777777777663 33 466667777777


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      +++|.++ .++....+++|++|++++|.+++                        ++.                      
T Consensus       114 l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~------------------------~~~----------------------  146 (308)
T 1h6u_A          114 LTSTQIT-DVTPLAGLSNLQVLYLDLNQITN------------------------ISP----------------------  146 (308)
T ss_dssp             CTTSCCC-CCGGGTTCTTCCEEECCSSCCCC------------------------CGG----------------------
T ss_pred             CCCCCCC-CchhhcCCCCCCEEECCCCccCc------------------------Ccc----------------------
Confidence            7777766 34443336666666666665432                        110                      


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI  306 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  306 (382)
                          +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|++++.++ +..++
T Consensus       147 ----l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~  217 (308)
T 1h6u_A          147 ----LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP-LANTS  217 (308)
T ss_dssp             ----GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred             ----ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence                3445566666666666663 222 55666666666666666633 22 5556666666666666666543 56666


Q ss_pred             CCCEEEccCCCCCCCCC
Q 048561          307 KNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       307 ~L~~L~L~~N~l~~lp~  323 (382)
                      +|+.|++++|.++..|.
T Consensus       218 ~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          218 NLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCCEEEEEEEEEECCCE
T ss_pred             CCCEEEccCCeeecCCe
Confidence            66666666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.5e-23  Score=189.68  Aligned_cols=219  Identities=17%  Similarity=0.137  Sum_probs=158.4

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      +..+++..+.+.+.   ..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus        21 l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred             HHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence            33445555555541   23557889999999999887 333 57889999999999999984 3 368889999999999


Q ss_pred             CCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          149 FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       149 ~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      +|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.++                         +.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~  148 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SL  148 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------------------------cc
Confidence            9999854444444 788999999999887665554444 44555555555444                         33


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI  306 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  306 (382)
                      .+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.      ++
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~  222 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CP  222 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TT
T ss_pred             CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------Cc
Confidence            344566777888888888888876666677888888888888888877776777888888888888877653      44


Q ss_pred             CCCEEEccCCCCCC-CCCcc
Q 048561          307 KNGVLDVNRNCIHY-LPDQR  325 (382)
Q Consensus       307 ~L~~L~L~~N~l~~-lp~~~  325 (382)
                      +|+.++++.|.+++ +|...
T Consensus       223 ~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCTT
T ss_pred             HHHHHHHHHHhCCCcccCcc
Confidence            67777888888775 55543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.2e-23  Score=188.22  Aligned_cols=203  Identities=17%  Similarity=0.095  Sum_probs=164.0

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...++.|+++++.+..  ++ .++.+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3478999999999886  23 47899999999999999985 3 478999999999999999997777778999999999


Q ss_pred             EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561          146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l  223 (382)
                      ++++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.++                        
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------  170 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------------------------  170 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC------------------------
Confidence            9999999955454444 899999999999998776665554 56666666666555                        


Q ss_pred             CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561          224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC  302 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~  302 (382)
                       +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.       +++|+.|++..|.++|..| .+
T Consensus       171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred             -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence             33444567788999999999999987777788999999999999988743       4578889999999998655 34


Q ss_pred             cCC
Q 048561          303 RKL  305 (382)
Q Consensus       303 ~~l  305 (382)
                      +.+
T Consensus       243 ~~~  245 (272)
T 3rfs_A          243 GSV  245 (272)
T ss_dssp             SCB
T ss_pred             ccc
Confidence            433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=3.5e-25  Score=212.10  Aligned_cols=234  Identities=19%  Similarity=0.214  Sum_probs=141.9

Q ss_pred             cCCCCCCCEEEcCCCcCcccC----CcccCCCCCCCEEEeecC---CCCccCcccc-------cCCCCCcEEEecCCCCC
Q 048561           88 IDQLPDLSLFHANSNKFSGTI----SPKLAQLPYLYELDISNN---KFSGTFPVAI-------LGKNDLSFLDIRFNFFT  153 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~  153 (382)
                      +..+++|++|++++|.+.+..    +..+..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            344455555555555554332    222444555555555553   2223333332       34555555555555555


Q ss_pred             C----CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------CcchhhhccCcccc-cccc---hhHHHhh
Q 048561          154 G----SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------TPALYLTFANNKFT-GSIP---RSIGKLS  210 (382)
Q Consensus       154 ~----~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~lp---~~l~~l~  210 (382)
                      +    .++..+. +++|++|++++|.++...+..+..              .+|++|++++|.++ +.++   ..+..+ 
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-  186 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH-  186 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC-
Confidence            3    1222222 455555555555543222222211              24555555555554 2223   233343 


Q ss_pred             hhHHHHHhhccccCC-----CCchhcccCcCCCccccCCccCC----CCCCcCCCCCCCCCEEeCcCCcCccc----Cch
Q 048561          211 STLIEVLFLNNLLTG-----CLPYELGFLREARVFDASNNRLT----GPLPCSLGCLEKIERLNLSGNLLYGQ----VPE  277 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~  277 (382)
                      ++|+.|++++|.+..     ..+..+..+++|++|+|++|.++    ..++..+..+++|++|++++|.+++.    ++.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            566667777776652     23336788999999999999985    45677788889999999999999865    456


Q ss_pred             hhc--CCCCCCEEEcccccCcc-----cCCcc-cCCCCCCEEEccCCCCCCCC
Q 048561          278 VLC--ALDNLVNLSLSNNYFTG-----VGPLC-RKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       278 ~~~--~l~~L~~L~L~~N~l~~-----~~~~~-~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .+.  .+++|++|+|++|.|++     ++..+ .++++|+.|++++|.+++..
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            663  38999999999999998     44444 56899999999999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=6.3e-22  Score=176.81  Aligned_cols=193  Identities=15%  Similarity=0.112  Sum_probs=115.6

Q ss_pred             CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC-CCccCcccccCCCCCcEEEecC-CCCCCCCCc-ccc-cCCCCEE
Q 048561           93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK-FSGTFPVAILGKNDLSFLDIRF-NFFTGSVPP-QVF-MQTLDVL  168 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~-~~~-l~~L~~L  168 (382)
                      +|++|++++|.+++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++ .++. .+. +++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            56666666666665444456666666666666665 5533334566666666666666 6666 3332 222 5666666


Q ss_pred             eCCCCcCCCcCCcCCCC-Ccch---hhhccCc-ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCC-cccc
Q 048561          169 FLNNNNFMQKLPQNLGS-TPAL---YLTFANN-KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREAR-VFDA  242 (382)
Q Consensus       169 ~L~~n~l~~~~p~~~~~-~~L~---~L~l~~n-~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L  242 (382)
                      ++++|.+++ +|. +.. .+++   +|++++| .++                         +..+..|..+++|+ .|++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-------------------------~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-------------------------SIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-------------------------EECTTTTTTTBSSEEEEEC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchh-------------------------hcCcccccchhcceeEEEc
Confidence            666666543 332 222 2222   3333333 222                         22333466677777 7888


Q ss_pred             CCccCCCCCCcCCCCCCCCCEEeCcCCc-CcccCchhhcCC-CCCCEEEcccccCcccCCcccCCCCCCEEEccCC
Q 048561          243 SNNRLTGPLPCSLGCLEKIERLNLSGNL-LYGQVPEVLCAL-DNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRN  316 (382)
Q Consensus       243 s~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N  316 (382)
                      ++|.++ .+|......++|++|++++|. +++..+..+..+ ++|+.|++++|+++++++.  .+++|+.|+++++
T Consensus       164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            888777 444333333678888888884 775556667777 7788888888888776554  5677777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.4e-25  Score=206.48  Aligned_cols=256  Identities=14%  Similarity=0.097  Sum_probs=185.4

Q ss_pred             CcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCC--CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCC
Q 048561           51 KYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQL--PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF  128 (382)
Q Consensus        51 ~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  128 (382)
                      +|+++.|+..       .++.++++++.+.    +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+
T Consensus        38 ~W~~~~~~~~-------~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           38 RWYRLASDES-------LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             HHHHHHTCST-------TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred             HHHHHhcCch-------hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence            7888887532       3678888887765    3445566  7889999999988866554 56788899999999888


Q ss_pred             Ccc-CcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC-cCCCc-CCcCCCC-CcchhhhccCc-ccccc-
Q 048561          129 SGT-FPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN-NFMQK-LPQNLGS-TPALYLTFANN-KFTGS-  201 (382)
Q Consensus       129 ~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n-~l~~~-~p~~~~~-~~L~~L~l~~n-~l~~~-  201 (382)
                      ++. ++..+..+++|++|++++|.+++..+..+. +++|++|++++| .+++. ++..+.. .+|++|++++| .+++. 
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            755 777788888999999999988766666555 788999999888 56542 4443433 67888888888 77753 


Q ss_pred             cchhHHHhhh-hHHHHHhhcc--ccC-CCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCc-CcccC
Q 048561          202 IPRSIGKLSS-TLIEVLFLNN--LLT-GCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNL-LYGQV  275 (382)
Q Consensus       202 lp~~l~~l~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~  275 (382)
                      ++..+..+ + +|+.|++++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +....
T Consensus       186 ~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          186 VQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             HHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             HHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence            45556665 5 7888888888  444 3456667788899999999998 666667778888899999999885 33222


Q ss_pred             chhhcCCCCCCEEEcccccCcccCCcccCC-CCCCEEEccCCCCCCCC
Q 048561          276 PEVLCALDNLVNLSLSNNYFTGVGPLCRKL-IKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       276 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~L~~L~L~~N~l~~lp  322 (382)
                      ...+..+++|+.|++++| ++..  .+..+ ..++.|++++|.+++..
T Consensus       265 ~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          265 LLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             GGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTT
T ss_pred             HHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCcccc
Confidence            235777889999999988 4332  22222 23566678889888853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=187.66  Aligned_cols=225  Identities=20%  Similarity=0.144  Sum_probs=179.5

Q ss_pred             ccceeEEEcCCCCCCCCCCccc--cCCCCCCCEEEcCCCcCcccCCccc--CCCCCCCEEEeecCCCCccCc----cccc
Q 048561           66 AIALASIDFNGFELAAPTLDGF--IDQLPDLSLFHANSNKFSGTISPKL--AQLPYLYELDISNNKFSGTFP----VAIL  137 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~  137 (382)
                      ...++.+.+....+........  +..+++|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3457888888887754211111  2235679999999999999999888  899999999999999997554    3456


Q ss_pred             CCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc--CC-cC-CCC-CcchhhhccCcccccccchh---H-H
Q 048561          138 GKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK--LP-QN-LGS-TPALYLTFANNKFTGSIPRS---I-G  207 (382)
Q Consensus       138 ~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~--~p-~~-~~~-~~L~~L~l~~n~l~~~lp~~---l-~  207 (382)
                      .+++|++|++++|.+.+..+..+. +++|++|++++|.+.+.  ++ .. +.. .+|++|++++|+++ .++..   + .
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            789999999999999866656655 89999999999998652  22 22 233 78999999999997 44432   3 4


Q ss_pred             HhhhhHHHHHhhccccCCCCchhcccC---cCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561          208 KLSSTLIEVLFLNNLLTGCLPYELGFL---REARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN  284 (382)
Q Consensus       208 ~l~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  284 (382)
                      .+ ++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|+|++. |. +..+++
T Consensus       222 ~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~  295 (310)
T 4glp_A          222 AG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE  295 (310)
T ss_dssp             HT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred             cC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence            44 789999999999998878777766   69999999999999 6777764  7999999999999953 44 678899


Q ss_pred             CCEEEcccccCcc
Q 048561          285 LVNLSLSNNYFTG  297 (382)
Q Consensus       285 L~~L~L~~N~l~~  297 (382)
                      |+.|+|++|+|+.
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            9999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.1e-21  Score=180.28  Aligned_cols=174  Identities=18%  Similarity=0.299  Sum_probs=141.2

Q ss_pred             cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561           65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF  144 (382)
Q Consensus        65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  144 (382)
                      ...+++.|++++|.+.+  .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++. +..+++|++
T Consensus        61 ~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  133 (308)
T 1h6u_A           61 YLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQV  133 (308)
T ss_dssp             GCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred             ccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCE
Confidence            35689999999999987  333 8999999999999999985 4 369999999999999999985 454 899999999


Q ss_pred             EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      |++++|.++ .++....+++|++|++++|.+++.                        +                     
T Consensus       134 L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~------------------------~---------------------  167 (308)
T 1h6u_A          134 LYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDL------------------------T---------------------  167 (308)
T ss_dssp             EECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCC------------------------G---------------------
T ss_pred             EECCCCccC-cCccccCCCCccEEEccCCcCCCC------------------------h---------------------
Confidence            999999998 555544488999999988876421                        1                     


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  300 (382)
                          . +..+++|+.|++++|.+++..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|.+++.+.
T Consensus       168 ----~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          168 ----P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             ----G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             ----h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence                1 3456788899999998885433  778889999999999998544  37888999999999999887543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.9e-21  Score=175.05  Aligned_cols=178  Identities=21%  Similarity=0.154  Sum_probs=145.7

Q ss_pred             CCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-Ccchhhhc
Q 048561          116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTF  193 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l  193 (382)
                      ...++++++++.++ .+|..+.  +++++|+|++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            35678999999988 7777665  6899999999999865555554 789999999999888766655554 45555555


Q ss_pred             cCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcc
Q 048561          194 ANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG  273 (382)
Q Consensus       194 ~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  273 (382)
                      ++|.+                         ++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|+|++
T Consensus        91 ~~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  145 (251)
T 3m19_A           91 ANNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS  145 (251)
T ss_dssp             TTSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence            55544                         44445567788999999999999997777778899999999999999997


Q ss_pred             cCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCC
Q 048561          274 QVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       274 ~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~l  321 (382)
                      ..+..+..+++|++|+|++|+++++++ .+..+++|+.|+|++|.++.-
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777789999999999999999999876 678999999999999999886

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=9.4e-24  Score=202.14  Aligned_cols=233  Identities=15%  Similarity=0.152  Sum_probs=185.2

Q ss_pred             cceeEEEcCCCCCCCCC---CccccCCCCCCCEEEcCCC---cCcccCCccc-------CCCCCCCEEEeecCCCCc---
Q 048561           67 IALASIDFNGFELAAPT---LDGFIDQLPDLSLFHANSN---KFSGTISPKL-------AQLPYLYELDISNNKFSG---  130 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~---~~~~~~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~---  130 (382)
                      .+++.|++++|.+.+..   +...+..+++|++|++++|   .+++.+|..+       ..+++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            46899999999987621   2234778999999999996   4555666555       789999999999999996   


Q ss_pred             -cCcccccCCCCCcEEEecCCCCCCCCCcccc-----c---------CCCCEEeCCCCcCC-CcCC---cCCCC-Ccchh
Q 048561          131 -TFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-----M---------QTLDVLFLNNNNFM-QKLP---QNLGS-TPALY  190 (382)
Q Consensus       131 -~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----l---------~~L~~L~L~~n~l~-~~~p---~~~~~-~~L~~  190 (382)
                       .++..+..+++|++|+|++|.++...+..+.     +         ++|++|++++|.++ +.++   ..+.. .+|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             4777888999999999999999743333332     2         89999999999987 3344   23333 68999


Q ss_pred             hhccCccccc-----ccchhHHHhhhhHHHHHhhccccC----CCCchhcccCcCCCccccCCccCCCC----CCcCC--
Q 048561          191 LTFANNKFTG-----SIPRSIGKLSSTLIEVLFLNNLLT----GCLPYELGFLREARVFDASNNRLTGP----LPCSL--  255 (382)
Q Consensus       191 L~l~~n~l~~-----~lp~~l~~l~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~--  255 (382)
                      |++++|.++.     ..+..+..+ ++|+.|++++|.++    ..++..+..+++|++|+|++|.+++.    ++..+  
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            9999999873     223355565 78999999999986    56778889999999999999999854    45555  


Q ss_pred             CCCCCCCEEeCcCCcCcc----cCchhh-cCCCCCCEEEcccccCcccCC
Q 048561          256 GCLEKIERLNLSGNLLYG----QVPEVL-CALDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       256 ~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~~~  300 (382)
                      +.+++|++|++++|.+++    .+|..+ ..+++|++|++++|.+++..+
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            448999999999999997    477777 568999999999999998663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=3.1e-20  Score=162.21  Aligned_cols=179  Identities=16%  Similarity=0.123  Sum_probs=140.8

Q ss_pred             CCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEee
Q 048561           49 ICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDIS  124 (382)
Q Consensus        49 ~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  124 (382)
                      .|.|.++.|...+-.    ....+++.|++++|++.+ +.+..|+++++|++|++++|.+++..+..|..+++|++|+++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            378999999753211    113478999999999987 566678899999999999999996666668899999999999


Q ss_pred             cCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccccc
Q 048561          125 NNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSI  202 (382)
Q Consensus       125 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~l  202 (382)
                      +|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+.+..
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            9999966566678999999999999999844444344 889999999999998766666665 78889999998877543


Q ss_pred             chhHHHhhhhHHHHHhhccccCCCCchhcccCcC
Q 048561          203 PRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLRE  236 (382)
Q Consensus       203 p~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~  236 (382)
                              +.++.|+++.|.+++.+|..++.+..
T Consensus       165 --------~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          165 --------PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --------CCHHHHHHHHHhCCceeeccCccccC
Confidence                    45778888888888888777665544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.8e-24  Score=211.55  Aligned_cols=255  Identities=16%  Similarity=0.091  Sum_probs=182.6

Q ss_pred             cceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcccCCcccC-CCC----CCCEEEeecCCCCc----cCcc
Q 048561           67 IALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSGTISPKLA-QLP----YLYELDISNNKFSG----TFPV  134 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~----~L~~L~Ls~n~l~~----~~p~  134 (382)
                      .+++.|++++|.+.+.   .++..+..+++|++|++++|.+.+..+..+. .++    +|++|+|++|.++.    .++.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            3678888888887742   1345567778888999988888754333332 344    68899999888873    4577


Q ss_pred             cccCCCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCcC----CcCCCC-CcchhhhccCcccccccc
Q 048561          135 AILGKNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQKL----PQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       135 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~~----p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      .+..+++|++|++++|.+++..+..+.      .++|++|++++|.+++..    +..+.. .+|++|++++|.+....+
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            788888999999998888743333222      346999999998887643    233322 678889999998875544


Q ss_pred             hhHHHhh----hhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCC-----CcCCCCCCCCCEEeCcCCc
Q 048561          204 RSIGKLS----STLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPL-----PCSLGCLEKIERLNLSGNL  270 (382)
Q Consensus       204 ~~l~~l~----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~N~  270 (382)
                      ..+....    .+|+.|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            4444321    3788899999988764    4666778899999999999887432     2233357899999999999


Q ss_pred             Cccc----CchhhcCCCCCCEEEcccccCcccCC-cc-----cCCCCCCEEEccCCCCCCC
Q 048561          271 LYGQ----VPEVLCALDNLVNLSLSNNYFTGVGP-LC-----RKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       271 l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~-~~-----~~l~~L~~L~L~~N~l~~l  321 (382)
                      +++.    ++..+..+++|++|++++|.+++... .+     ...++|+.|++++|.++..
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            9853    56777778999999999999875432 11     2346899999999998863

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=5.6e-24  Score=208.12  Aligned_cols=252  Identities=17%  Similarity=0.098  Sum_probs=143.4

Q ss_pred             ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcccCCccc-----CCCCCCCEEEeecCCCCcc----Cccc
Q 048561           68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSGTISPKL-----AQLPYLYELDISNNKFSGT----FPVA  135 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~  135 (382)
                      +++.|++++|.+...   .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            488888888888741   235567888888888888888764433322     2245788888888887753    3445


Q ss_pred             ccCCCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCc----CCcCCCC-CcchhhhccCcccccccch
Q 048561          136 ILGKNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQK----LPQNLGS-TPALYLTFANNKFTGSIPR  204 (382)
Q Consensus       136 l~~l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~----~p~~~~~-~~L~~L~l~~n~l~~~lp~  204 (382)
                      +..+++|++|++++|.++...+..+.      .++|++|++++|.++..    ++..+.. .+|++|++++|.+.+....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            56677788888888777633222221      34677777777776543    2333332 5566677777766533222


Q ss_pred             hHHH----hhhhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCCCcCCC-----CCCCCCEEeCcCCcC
Q 048561          205 SIGK----LSSTLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPLPCSLG-----CLEKIERLNLSGNLL  271 (382)
Q Consensus       205 ~l~~----l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l  271 (382)
                      .+..    -.++|+.|++++|.++..    ++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence            2211    124566666666666543    344455566666666666665432111111     124566666666665


Q ss_pred             ccc----CchhhcCCCCCCEEEcccccCcccCC-cc----c-CCCCCCEEEccCCCCC
Q 048561          272 YGQ----VPEVLCALDNLVNLSLSNNYFTGVGP-LC----R-KLIKNGVLDVNRNCIH  319 (382)
Q Consensus       272 ~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~-~~----~-~l~~L~~L~L~~N~l~  319 (382)
                      ++.    ++.++..+++|++|++++|.+++... .+    . ..++|+.|++++|.++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            543    33444455566666666665554321 11    1 1445666666666555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.4e-20  Score=168.07  Aligned_cols=180  Identities=16%  Similarity=0.184  Sum_probs=145.7

Q ss_pred             CCCCEEEeecCCCCccCcccccCCCCCcEEEecCCC-CCCCCCc-ccc-cCCCCEEeCCC-CcCCCcCCcCCCC-Ccchh
Q 048561          116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF-FTGSVPP-QVF-MQTLDVLFLNN-NNFMQKLPQNLGS-TPALY  190 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~-~~~-l~~L~~L~L~~-n~l~~~~p~~~~~-~~L~~  190 (382)
                      ++|++|++++|++++..+..|..+++|++|++++|. ++ .++. .+. +++|++|++++ |.+++..+..+.. .+|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            489999999999996666689999999999999997 87 5554 443 89999999998 9888666666655 56777


Q ss_pred             hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCC---ccccCCc-cCCCCCCcCCCCCCCCC-EEe
Q 048561          191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREAR---VFDASNN-RLTGPLPCSLGCLEKIE-RLN  265 (382)
Q Consensus       191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~  265 (382)
                      |++++|.+++ +                         |. +..+++|+   +|++++| .+++..+..|..+++|+ +|+
T Consensus       110 L~l~~n~l~~-l-------------------------p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~  162 (239)
T 2xwt_C          110 LGIFNTGLKM-F-------------------------PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK  162 (239)
T ss_dssp             EEEEEECCCS-C-------------------------CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred             EeCCCCCCcc-c-------------------------cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence            7777666652 2                         22 45566666   9999999 99976677799999999 999


Q ss_pred             CcCCcCcccCchhhcCCCCCCEEEccccc-CcccCC-cccCC-CCCCEEEccCCCCCCCCCc
Q 048561          266 LSGNLLYGQVPEVLCALDNLVNLSLSNNY-FTGVGP-LCRKL-IKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       266 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l-~~L~~L~L~~N~l~~lp~~  324 (382)
                      +++|.++ .+|......++|+.|++++|+ ++++++ .+..+ ++|+.|++++|+|+.+|+.
T Consensus       163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            9999999 555544444899999999995 998765 57888 9999999999999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=4.6e-21  Score=181.13  Aligned_cols=235  Identities=20%  Similarity=0.171  Sum_probs=162.7

Q ss_pred             CCcCceeeCCCC--CCC--cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCC-cccCCCCCCCE-EEe
Q 048561           50 CKYKGFYCGHPP--DNL--TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTIS-PKLAQLPYLYE-LDI  123 (382)
Q Consensus        50 C~w~gv~c~~~~--~~~--~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L  123 (382)
                      |.|..|.|....  ...  -..+++.|+|++|+|+. +.+++|+++++|++|+|++|.+.+.+| .+|.++++|++ +.+
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            788889996522  110  12468899999999987 566678999999999999999866555 46788888775 566


Q ss_pred             ecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCC-CcCCCcCCcCCCC--CcchhhhccCccc
Q 048561          124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN-NNFMQKLPQNLGS--TPALYLTFANNKF  198 (382)
Q Consensus       124 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~-n~l~~~~p~~~~~--~~L~~L~l~~n~l  198 (382)
                      ++|+++...|..|..+++|++|++++|++. .++...+  ..++..|++.+ +.+....+..+..  ..+++|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            778998666778889999999999999998 5555443  55677788765 4555444445554  3567788888888


Q ss_pred             ccccchhHHHhhhhHHHHHhhc-cccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC-cCcccCc
Q 048561          199 TGSIPRSIGKLSSTLIEVLFLN-NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN-LLYGQVP  276 (382)
Q Consensus       199 ~~~lp~~l~~l~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p  276 (382)
                      + .++...+.. .+++.+++.+ |.+....+..|..+++|++|++++|+|+. +|..  .+.+|+.|.+.++ .++ .+|
T Consensus       167 ~-~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~-~lP  240 (350)
T 4ay9_X          167 Q-EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLK-KLP  240 (350)
T ss_dssp             C-EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCC-CCC
T ss_pred             c-CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcC-cCC
Confidence            8 566655554 4677777765 44554444567788888888888888874 4432  2345555555443 343 555


Q ss_pred             hhhcCCCCCCEEEcccc
Q 048561          277 EVLCALDNLVNLSLSNN  293 (382)
Q Consensus       277 ~~~~~l~~L~~L~L~~N  293 (382)
                       .+..+++|+.+++.++
T Consensus       241 -~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          241 -TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -CTTTCCSCCEEECSCH
T ss_pred             -CchhCcChhhCcCCCC
Confidence             3667778888888765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=7.8e-23  Score=194.16  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=181.2

Q ss_pred             EEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc----ccccCCC-CCcEEEecCCCCCCCCCcccc-c-----CC
Q 048561           96 LFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP----VAILGKN-DLSFLDIRFNFFTGSVPPQVF-M-----QT  164 (382)
Q Consensus        96 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~-l-----~~  164 (382)
                      +++++.|.+++.+|..+...++|++|+|++|.+++..+    ..+..++ +|++|+|++|.+++..+..+. +     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46889999999998888877889999999999996655    6778888 899999999999966565554 3     89


Q ss_pred             CCEEeCCCCcCCCcCCcCCCC------CcchhhhccCcccccccchhHHHh----hhhHHHHHhhccccCCCCch----h
Q 048561          165 LDVLFLNNNNFMQKLPQNLGS------TPALYLTFANNKFTGSIPRSIGKL----SSTLIEVLFLNNLLTGCLPY----E  230 (382)
Q Consensus       165 L~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~lp~~l~~l----~~~L~~L~l~~n~l~~~~~~----~  230 (382)
                      |++|++++|.+++..+..+..      .+|++|++++|.+++..+..+...    ..+|++|++++|.+.+....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998766653332      579999999999997666666554    35899999999999865443    3


Q ss_pred             cccCc-CCCccccCCccCCCCCCcCC----CCC-CCCCEEeCcCCcCccc----CchhhcC-CCCCCEEEcccccCcccC
Q 048561          231 LGFLR-EARVFDASNNRLTGPLPCSL----GCL-EKIERLNLSGNLLYGQ----VPEVLCA-LDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       231 ~~~l~-~L~~L~Ls~n~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~  299 (382)
                      +..+. +|++|++++|.+++..+..+    ..+ ++|++|++++|.|++.    ++..+.. .++|++|+|++|.|++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            45555 99999999999986665433    344 5999999999999853    4555555 459999999999998764


Q ss_pred             C-----cccCCCCCCEEEccCCCCCCCC
Q 048561          300 P-----LCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       300 ~-----~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .     .+..+++|+.|++++|.+..+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~  269 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMS  269 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccC
Confidence            3     3577899999999999966654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.5e-20  Score=187.69  Aligned_cols=190  Identities=22%  Similarity=0.318  Sum_probs=136.4

Q ss_pred             CcCce-eeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCC
Q 048561           51 KYKGF-YCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS  129 (382)
Q Consensus        51 ~w~gv-~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  129 (382)
                      .|.++ .|...       +++.|++++|++.+ + +..+  +++|++|++++|.++ .+|   ..+++|++|+|++|.|+
T Consensus        49 ~~~~l~~C~~~-------~L~~L~Ls~n~L~~-l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~  113 (571)
T 3cvr_A           49 AVSLLKECLIN-------QFSELQLNRLNLSS-L-PDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS  113 (571)
T ss_dssp             HHHHHHHHHHT-------TCSEEECCSSCCSC-C-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred             hhhhccccccC-------CccEEEeCCCCCCc-c-CHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence            68888 67532       68999999999987 3 3333  378999999999999 677   45789999999999999


Q ss_pred             ccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHh
Q 048561          130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKL  209 (382)
Q Consensus       130 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l  209 (382)
                      + +|. +..  +|++|+|++|.+++ +|.  .+++|++|++++|.+++ +|.  ...+|++|++++|.+++ +       
T Consensus       114 ~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-l-------  175 (571)
T 3cvr_A          114 T-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-L-------  175 (571)
T ss_dssp             C-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-C-------
T ss_pred             C-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-c-------
Confidence            5 777 655  89999999999995 777  67899999999998875 443  22445555555555442 2       


Q ss_pred             hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCC-------CEEeCcCCcCcccCchhhcCC
Q 048561          210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI-------ERLNLSGNLLYGQVPEVLCAL  282 (382)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l  282 (382)
                                        |. +.  ++|+.|++++|.|+ .+|. +..  +|       +.|++++|.|+ .+|..+..+
T Consensus       176 ------------------p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          176 ------------------PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             ------------------CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             ------------------ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence                              22 22  56777777777777 4555 443  55       77777777777 566666667


Q ss_pred             CCCCEEEcccccCcccC
Q 048561          283 DNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       283 ~~L~~L~L~~N~l~~~~  299 (382)
                      ++|+.|+|++|.|++..
T Consensus       230 ~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CTTEEEECCSSSCCHHH
T ss_pred             CCCCEEEeeCCcCCCcC
Confidence            77777777777776643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=2.1e-22  Score=188.76  Aligned_cols=229  Identities=14%  Similarity=0.130  Sum_probs=182.4

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc-CCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT-ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ..++.+++++|.+.+. .+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCcccccc-chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            5789999999999883 333 66899999999999999865 78889999999999999999998888889999999999


Q ss_pred             EecCC-CCCCC-CCcccc-cCCCCEEeCCCC-cCCCc-CCcCCCC-C-cchhhhccCc--ccc-cccchhHHHhhhhHHH
Q 048561          146 DIRFN-FFTGS-VPPQVF-MQTLDVLFLNNN-NFMQK-LPQNLGS-T-PALYLTFANN--KFT-GSIPRSIGKLSSTLIE  215 (382)
Q Consensus       146 ~Ls~n-~l~~~-~p~~~~-l~~L~~L~L~~n-~l~~~-~p~~~~~-~-~L~~L~l~~n--~l~-~~lp~~l~~l~~~L~~  215 (382)
                      ++++| .+++. ++..+. +++|++|++++| .+++. ++..+.. . +|++|++++|  .++ +.++..+..+ ++|+.
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~  226 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVH  226 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCE
Confidence            99999 67742 455444 899999999999 88753 4444444 5 8999999999  454 4566666776 88999


Q ss_pred             HHhhccc-cCCCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccc
Q 048561          216 VLFLNNL-LTGCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN  293 (382)
Q Consensus       216 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  293 (382)
                      |++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +....-..+.  .+++.|++++|
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n  303 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS  303 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence            9999999 777777889999999999999995 33222235778999999999999 5432222222  34777779999


Q ss_pred             cCcccCCc
Q 048561          294 YFTGVGPL  301 (382)
Q Consensus       294 ~l~~~~~~  301 (382)
                      ++++..+.
T Consensus       304 ~l~~~~~~  311 (336)
T 2ast_B          304 HFTTIARP  311 (336)
T ss_dssp             CSCCTTCS
T ss_pred             cCccccCC
Confidence            99997653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.1e-20  Score=185.40  Aligned_cols=178  Identities=26%  Similarity=0.323  Sum_probs=138.9

Q ss_pred             CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC
Q 048561           93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN  172 (382)
Q Consensus        93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~  172 (382)
                      +|+.|++++|.+++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|++|++++|.+++ +|. + ..+|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CTTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hcCCCEEECCC
Confidence            78889999988885 676553  78899999999888 677   456888899999888884 776 3 23888888888


Q ss_pred             CcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561          173 NNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP  252 (382)
Q Consensus       173 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  252 (382)
                      |.+++ +|.  ...+|++|++++|.++                         + +|.   .+++|+.|++++|.+++ +|
T Consensus       130 N~l~~-lp~--~l~~L~~L~Ls~N~l~-------------------------~-lp~---~l~~L~~L~Ls~N~L~~-lp  176 (571)
T 3cvr_A          130 NQLTM-LPE--LPALLEYINADNNQLT-------------------------M-LPE---LPTSLEVLSVRNNQLTF-LP  176 (571)
T ss_dssp             SCCSC-CCC--CCTTCCEEECCSSCCS-------------------------C-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CcCCC-CCC--cCccccEEeCCCCccC-------------------------c-CCC---cCCCcCEEECCCCCCCC-cc
Confidence            88875 444  2345555555555544                         3 332   46789999999999996 77


Q ss_pred             cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCC-------CEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561          253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL-------VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      . +.  ++|+.|++++|.|+ .+|. +..  +|       +.|+|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus       177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            6 65  89999999999999 6777 554  77       99999999999988878889999999999999987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.9e-20  Score=176.88  Aligned_cols=238  Identities=13%  Similarity=0.033  Sum_probs=177.4

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc-cccCCCCCcE-EEe
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV-AILGKNDLSF-LDI  147 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~L  147 (382)
                      +.++-++++++.  +|..+  .+++++|+|++|+|+...+.+|+++++|++|+|++|++.+.+|. .|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            346778888886  33333  36899999999999965556799999999999999999766664 5788888775 677


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC-cccccccc-hhHHHhhhhHHHHHhhcccc
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN-NKFTGSIP-RSIGKLSSTLIEVLFLNNLL  223 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~-n~l~~~lp-~~l~~l~~~L~~L~l~~n~l  223 (382)
                      +.|+++...|..+. +++|++|++++|.+....+..+.. .++..+++.+ +.+. .++ ..+..+...++.|++++|.+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence            78999844445444 899999999999998766655544 6677788866 4565 444 34555545678899999999


Q ss_pred             CCCCchhcccCcCCCccccCC-ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc
Q 048561          224 TGCLPYELGFLREARVFDASN-NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC  302 (382)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  302 (382)
                      +...+ ......+|+.|++++ |.++...+..|..+++|++|++++|+|+ .+|..  .+.+|+.|.+.++.--...|.+
T Consensus       167 ~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l  242 (350)
T 4ay9_X          167 QEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTL  242 (350)
T ss_dssp             CEECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred             cCCCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCc
Confidence            85444 444567899999975 6677444467899999999999999999 55543  3467777777666433344568


Q ss_pred             cCCCCCCEEEccCC
Q 048561          303 RKLIKNGVLDVNRN  316 (382)
Q Consensus       303 ~~l~~L~~L~L~~N  316 (382)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            89999999999764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=8e-19  Score=155.73  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=133.2

Q ss_pred             CCCCCCCCCCCCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCC
Q 048561           39 NITSTWIGSDICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQ  114 (382)
Q Consensus        39 ~~~~~W~~~~~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~  114 (382)
                      ..-..|.+.+.|.|.++.|....-.    ....+++.|++++|.+.+ +.+..|.++++|++|++++|.++...+..|..
T Consensus         8 ~~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A            8 HHSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             ---CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             hhhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            3445666778899999999763211    113578999999999998 56778999999999999999998666667899


Q ss_pred             CCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-Ccchhhh
Q 048561          115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLT  192 (382)
Q Consensus       115 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~  192 (382)
                      +++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|..+. +++|++|++++|.+++..+..+.. .+|++|+
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            999999999999999666667889999999999999999 8887766 899999999999998776666766 7899999


Q ss_pred             ccCcccccc
Q 048561          193 FANNKFTGS  201 (382)
Q Consensus       193 l~~n~l~~~  201 (382)
                      +++|.+...
T Consensus       166 l~~N~~~c~  174 (229)
T 3e6j_A          166 LFGNPWDCE  174 (229)
T ss_dssp             CTTSCBCTT
T ss_pred             eeCCCccCC
Confidence            999988754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.6e-19  Score=163.06  Aligned_cols=170  Identities=25%  Similarity=0.326  Sum_probs=98.7

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.|+++++.+..  ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        47 ~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           47 SIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             TCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            45555555555544  12 2455555555555555555322 2 5555555555555555542 22 2555555555555


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL  227 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~  227 (382)
                      ++|.++ .++....+++|++|++++|.++                                                +. 
T Consensus       120 ~~n~i~-~~~~l~~l~~L~~L~l~~n~l~------------------------------------------------~~-  149 (291)
T 1h6t_A          120 EHNGIS-DINGLVHLPQLESLYLGNNKIT------------------------------------------------DI-  149 (291)
T ss_dssp             TTSCCC-CCGGGGGCTTCCEEECCSSCCC------------------------------------------------CC-
T ss_pred             CCCcCC-CChhhcCCCCCCEEEccCCcCC------------------------------------------------cc-
Confidence            555555 2332222445555555444432                                                11 


Q ss_pred             chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561          228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  299 (382)
                       ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++..+
T Consensus       150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence             234566778888888888875433  7778888888888888874 44 3777888888888888877643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=6.6e-20  Score=188.95  Aligned_cols=247  Identities=16%  Similarity=0.159  Sum_probs=141.2

Q ss_pred             hhhhHHHHHHHHHHHHhCcCCCCCCCCCCCCC--CCCCcCceeeCCCCC-----------CCcccceeEEEcCCCCCCCC
Q 048561           16 DQRLAAIYPIIQTFKNTITSDPFNITSTWIGS--DICKYKGFYCGHPPD-----------NLTAIALASIDFNGFELAAP   82 (382)
Q Consensus        16 ~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~~~--~~C~w~gv~c~~~~~-----------~~~~~~l~~L~L~~~~l~~~   82 (382)
                      .+....+++||.++..+.....+.....|...  ..+.|.+..+..+..           ......++.++|+.+.+.+.
T Consensus       127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~  206 (727)
T 4b8c_D          127 KSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDED  206 (727)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred             hhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence            44566778899999988765556666677532  346777766554210           00112234455555554431


Q ss_pred             --------CCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCC
Q 048561           83 --------TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTG  154 (382)
Q Consensus        83 --------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  154 (382)
                              .++..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+ 
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence                    24666889999999999999999 78888889999999999999999 89999999999999999999999 


Q ss_pred             CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcc
Q 048561          155 SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELG  232 (382)
Q Consensus       155 ~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~  232 (382)
                      .+|..+. +++|++|+|++|.++ .+|..|+. .+|++|++++|.+++.+|..+.........+++++|.+++.+|..  
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~--  360 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE--  360 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence            8888777 899999999999986 77887877 889999999999999999888776445566899999999888764  


Q ss_pred             cCcCCCccccCCc--------cCCCCCCcCCCCCCCCCEEeCcCCcCc
Q 048561          233 FLREARVFDASNN--------RLTGPLPCSLGCLEKIERLNLSGNLLY  272 (382)
Q Consensus       233 ~l~~L~~L~Ls~n--------~l~~~~p~~~~~l~~L~~L~L~~N~l~  272 (382)
                          |+.|+++.|        .+.+..+..+..+..+....+++|-+.
T Consensus       361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---------------------------------------------CCC
T ss_pred             ----cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence                455666666        333333444455666677777777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.5e-19  Score=156.45  Aligned_cols=178  Identities=15%  Similarity=0.086  Sum_probs=133.6

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.++.+++++..  ++..  -.++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~--~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS--VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS--CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC--CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            567888888876  2322  356899999999999977666789999999999999999966556678999999999999


Q ss_pred             CCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          150 NFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       150 n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      |.++ .++.. +. +++|++|++++|.+++..+..+.. .+|++|++++|.++                         +.
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------------~~  139 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------------SV  139 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------------CC
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------------ee
Confidence            9999 45543 33 899999999999988665555544 55666666666555                         33


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN  284 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  284 (382)
                      .+..+..+++|++|++++|.+.+       .+++|++|++..|+++|.+|.+++.++.
T Consensus       140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            33446667788888888886653       3456778888888888888877776554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=5.1e-19  Score=178.31  Aligned_cols=189  Identities=20%  Similarity=0.245  Sum_probs=113.6

Q ss_pred             EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561           71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN  150 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  150 (382)
                      .+.+..+.+.+ .  ..+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|++|+|++|
T Consensus        25 ~l~l~~~~i~~-~--~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           25 KDNLKKKSVTD-A--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHTTCSCTTS-E--ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHhccCCCccc-c--cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            34444444443 1  113456667777777776663 33 46667777777777777764332  666777777777777


Q ss_pred             CCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561          151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE  230 (382)
Q Consensus       151 ~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~  230 (382)
                      .+. .++....+++|+.|+|++|.+.+. +.                        +..+ ++|+.|+|++|.+.+.  ..
T Consensus        98 ~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~------------------------l~~l-~~L~~L~Ls~N~l~~l--~~  148 (605)
T 1m9s_A           98 KIK-DLSSLKDLKKLKSLSLEHNGISDI-NG------------------------LVHL-PQLESLYLGNNKITDI--TV  148 (605)
T ss_dssp             CCC-CCTTSTTCTTCCEEECTTSCCCCC-GG------------------------GGGC-TTCSEEECCSSCCCCC--GG
T ss_pred             CCC-CChhhccCCCCCEEEecCCCCCCC-cc------------------------ccCC-CccCEEECCCCccCCc--hh
Confidence            766 344333366666666666665431 11                        1111 2233333333333322  34


Q ss_pred             cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561          231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  299 (382)
                      +..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.|.+ ++ .+..+++|+.|+|++|.+++.+
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence            5667778888888888875544  7777888888888888874 33 4777788888888888877653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=6.5e-18  Score=155.36  Aligned_cols=190  Identities=22%  Similarity=0.250  Sum_probs=154.8

Q ss_pred             EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561           71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN  150 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  150 (382)
                      .+.+....+.+.   ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|
T Consensus        28 ~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           28 KDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred             HHHhcCCCcccc---cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCC
Confidence            334455544441   224578899999999999984 44 488899999999999999954 44 899999999999999


Q ss_pred             CCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561          151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE  230 (382)
Q Consensus       151 ~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~  230 (382)
                      .++ .++....+++|++|++++|.+++                        +                          ..
T Consensus       101 ~l~-~~~~l~~l~~L~~L~L~~n~i~~------------------------~--------------------------~~  129 (291)
T 1h6t_A          101 KVK-DLSSLKDLKKLKSLSLEHNGISD------------------------I--------------------------NG  129 (291)
T ss_dssp             CCC-CGGGGTTCTTCCEEECTTSCCCC------------------------C--------------------------GG
T ss_pred             cCC-CChhhccCCCCCEEECCCCcCCC------------------------C--------------------------hh
Confidence            998 56654448899999999887642                        0                          12


Q ss_pred             cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCE
Q 048561          231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGV  310 (382)
Q Consensus       231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~  310 (382)
                      +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.|+++. .+..+++|+.
T Consensus       130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~  204 (291)
T 1h6t_A          130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDV  204 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSE
T ss_pred             hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCE
Confidence            45677899999999999954  578899999999999999996544  889999999999999999864 5889999999


Q ss_pred             EEccCCCCCCCCC
Q 048561          311 LDVNRNCIHYLPD  323 (382)
Q Consensus       311 L~L~~N~l~~lp~  323 (382)
                      |++++|+++..|.
T Consensus       205 L~l~~n~i~~~~~  217 (291)
T 1h6t_A          205 LELFSQECLNKPI  217 (291)
T ss_dssp             EEEEEEEEECCCE
T ss_pred             EECcCCcccCCcc
Confidence            9999999988764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=3.5e-22  Score=200.13  Aligned_cols=190  Identities=19%  Similarity=0.124  Sum_probs=146.3

Q ss_pred             CCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCC-------------CCCCCCcccc-cCCCCEEe-CCCCcCCC
Q 048561          113 AQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF-------------FTGSVPPQVF-MQTLDVLF-LNNNNFMQ  177 (382)
Q Consensus       113 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~-l~~L~~L~-L~~n~l~~  177 (382)
                      ..+++|+.|+|++|.++ .+|..++.+++|++|++++|.             +.+..|..+. +++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            56788888999999887 788888888888888887664             3333444333 55566665 444432  


Q ss_pred             cCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCC
Q 048561          178 KLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC  257 (382)
Q Consensus       178 ~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  257 (382)
                              ..+..+.+.+|.+. .++    .  ..|+.|++++|.+++ +|. +..+++|+.|++++|.|+ .+|..++.
T Consensus       423 --------~~L~~l~l~~n~i~-~l~----~--~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 --------DDLRSKFLLENSVL-KME----Y--ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             --------HHHHHHHHHHHHHH-HHH----H--TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             --------chhhhhhhhccccc-ccC----c--cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                    23445555555544 111    1  246778899999986 565 899999999999999999 78889999


Q ss_pred             CCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCCCCCcc
Q 048561          258 LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYLPDQR  325 (382)
Q Consensus       258 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~  325 (382)
                      +++|+.|+|++|.|++ +| .+..+++|+.|+|++|+|++.  +..+..+++|+.|+|++|.|+++|+..
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            9999999999999995 67 788999999999999999998  567899999999999999999988643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.6e-17  Score=146.35  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=124.6

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|..+.|....-.    .....++.|++++|++.+ +.+..|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            78889999753211    012478999999999987 5666789999999999999999988899999999999999999


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG  200 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~  200 (382)
                      |.++...+..|..+++|++|+|++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999955555578899999999999999966566555 899999999999998887777776 788999999998863

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.5e-17  Score=145.08  Aligned_cols=153  Identities=19%  Similarity=0.172  Sum_probs=84.4

Q ss_pred             CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc-ccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561           95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP-VAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus        95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      +.+++++|.++ .+|..+.  ..+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..+. +++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            35666666665 3454432  334566666666654323 2345556666666666655532222222 44555555554


Q ss_pred             CcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561          173 NNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP  252 (382)
Q Consensus       173 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  252 (382)
                      |.+++                                                ..+..|..+++|++|++++|.+++..|
T Consensus        91 N~l~~------------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~  122 (220)
T 2v70_A           91 NRLEN------------------------------------------------VQHKMFKGLESLKTLMLRSNRITCVGN  122 (220)
T ss_dssp             SCCCC------------------------------------------------CCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred             CccCc------------------------------------------------cCHhHhcCCcCCCEEECCCCcCCeECH
Confidence            44332                                                122234455666666666666666556


Q ss_pred             cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561          253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      ..|..+++|++|++++|.|++..|..+..+++|++|+|++|.+.+.
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            6666666666666666666655566666666666666666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.9e-17  Score=165.55  Aligned_cols=171  Identities=22%  Similarity=0.303  Sum_probs=137.3

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...|+.|+++++.+..  ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+++ ++ .+..+++|++|
T Consensus        42 L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            3468899999999987  33 48899999999999999996544  8999999999999999984 44 68999999999


Q ss_pred             EecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +|++|.+. .++....+++|+.|+|++|.+++.  ..+.                       .+ ++|+.|+|++|.+.+
T Consensus       115 ~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~-----------------------~l-~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          115 SLEHNGIS-DINGLVHLPQLESLYLGNNKITDI--TVLS-----------------------RL-TKLDTLSLEDNQISD  167 (605)
T ss_dssp             ECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC--GGGG-----------------------SC-TTCSEEECCSSCCCC
T ss_pred             EecCCCCC-CCccccCCCccCEEECCCCccCCc--hhhc-----------------------cc-CCCCEEECcCCcCCC
Confidence            99999999 566555589999999999988753  2222                       22 345555555555554


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCccc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ  274 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  274 (382)
                      ..+  +..+++|+.|+|++|.|++ ++ .+..+++|+.|+|++|.+.+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             chh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            444  7788999999999999995 44 688999999999999999854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=3.7e-18  Score=150.46  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=90.8

Q ss_pred             CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcc
Q 048561          119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNK  197 (382)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~  197 (382)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..+. +++|++|++++|.+++..|                 
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-----------------   73 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-----------------   73 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----------------
Confidence            56777777776 5665553  5677777777777733332333 5667777776666543333                 


Q ss_pred             cccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCch
Q 048561          198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE  277 (382)
Q Consensus       198 l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  277 (382)
                                                     ..|.++++|++|+|++|.|+...+..|..+++|++|++++|.|++..+.
T Consensus        74 -------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           74 -------------------------------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             -------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             -------------------------------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence                                           3444555666666666666644444455566666666666666655555


Q ss_pred             hhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC
Q 048561          278 VLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       278 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  320 (382)
                      .+..+++|++|+|++|+|+++++ .+..+++|+.|+|++|.+..
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            66666666666666666666554 35556666666666666544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=6.2e-18  Score=146.32  Aligned_cols=60  Identities=18%  Similarity=0.152  Sum_probs=26.5

Q ss_pred             ccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561          232 GFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF  295 (382)
Q Consensus       232 ~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (382)
                      ..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+|
T Consensus       133 ~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            344455555555554 33 233 34444455555555554442 22 334444444444444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=1.6e-16  Score=140.73  Aligned_cols=102  Identities=18%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.++.+++++..  ++..+  .++|++|++++|.+++..|..|..+++|++|+|++|+++...+..|..+++|++|+|++
T Consensus        22 ~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777776665  22222  26677777777777766666666777777777777777643334456666677777776


Q ss_pred             CCCCCCCCcccc-cCCCCEEeCCCCcC
Q 048561          150 NFFTGSVPPQVF-MQTLDVLFLNNNNF  175 (382)
Q Consensus       150 n~l~~~~p~~~~-l~~L~~L~L~~n~l  175 (382)
                      |.+++..+..+. +++|++|++++|.+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcc
Confidence            666622222222 55555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=9.5e-18  Score=151.97  Aligned_cols=169  Identities=21%  Similarity=0.286  Sum_probs=104.3

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.++++++.+.+  ++ .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++ ++. +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            45556666666665  22 3566777777777777776 344 56667777777777777763 333 667777777777


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL  227 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~  227 (382)
                      ++|.++ .++.... ++|++|++++|.+++.                                                 
T Consensus        93 ~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~~-------------------------------------------------  121 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS-ACLSRLFLDNNELRDT-------------------------------------------------  121 (263)
T ss_dssp             CSSCCS-CCTTCCC-SSCCEEECCSSCCSBS-------------------------------------------------
T ss_pred             CCCccC-CcCcccc-CcccEEEccCCccCCC-------------------------------------------------
Confidence            777776 3444333 5566666666554321                                                 


Q ss_pred             chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561          228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  299 (382)
                       ..+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+
T Consensus       122 -~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          122 -DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence             123455666666777766663 33 455666677777777776643  45666667777777777666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.4e-17  Score=157.87  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=92.4

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccC-CCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLA-QLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      +.++++++++..  ++..+  ...++.|+|++|.+++..+..+. .+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            468899998887  33323  34689999999999977777777 89999999999999997666789999999999999


Q ss_pred             CCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc
Q 048561          149 FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT  199 (382)
Q Consensus       149 ~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~  199 (382)
                      +|.+++..+..+. +++|++|+|++|.+++..+..+.. .+|++|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            9999843333343 788899988888876554444433 34444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=145.07  Aligned_cols=154  Identities=18%  Similarity=0.217  Sum_probs=125.6

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|..+.|....-.    .....++.|++++|++.+......|.++++|++|++++|.+++..+..|..+++|++|+|++
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            68888888642110    11235689999999998743456688999999999999999977777899999999999999


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      |.+++..+..|..+++|++|+|++|.+++..|..+. +++|++|++++|.+++..|..+.. .+|++|++++|.+...-+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999977777789999999999999999966666655 899999999999999888888877 788999999998885543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1.5e-18  Score=164.64  Aligned_cols=173  Identities=18%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc--ccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC
Q 048561          119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV--FMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN  195 (382)
Q Consensus       119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~  195 (382)
                      +.++++++.++ .+|..+.  ..+++|+|++|.+++..+..+  .+++|++|+|++|.+++..+..|.. .+|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            68899999988 6777654  458899999999985444444  4788999999999887766666655 5566666666


Q ss_pred             cccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC
Q 048561          196 NKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV  275 (382)
Q Consensus       196 n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  275 (382)
                      |.+++                         ..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|.|++..
T Consensus        98 N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           98 NHLHT-------------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             SCCCE-------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CcCCc-------------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            66552                         23334555666666666666666555566666666666666666666332


Q ss_pred             chhh---cCCCCCCEEEcccccCcccCC-cccCCCC--CCEEEccCCCCC
Q 048561          276 PEVL---CALDNLVNLSLSNNYFTGVGP-LCRKLIK--NGVLDVNRNCIH  319 (382)
Q Consensus       276 p~~~---~~l~~L~~L~L~~N~l~~~~~-~~~~l~~--L~~L~L~~N~l~  319 (382)
                      +..+   ..+++|+.|+|++|+|++++. .+..++.  ++.|+|++|.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3333   345666666666666665543 3344444  355666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=5e-18  Score=153.78  Aligned_cols=174  Identities=18%  Similarity=0.158  Sum_probs=134.6

Q ss_pred             CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEe
Q 048561           90 QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLF  169 (382)
Q Consensus        90 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~  169 (382)
                      ++.++..+++.++.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++....+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChhhccCCCCCEEE
Confidence            345566677777777743 3 4677788888888888887 555 5777888888888888887 444433377788887


Q ss_pred             CCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC
Q 048561          170 LNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG  249 (382)
Q Consensus       170 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  249 (382)
                      +++|.+++                        ++                         . +.. ++|+.|++++|.+++
T Consensus        92 L~~N~l~~------------------------l~-------------------------~-~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           92 VNRNRLKN------------------------LN-------------------------G-IPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             CCSSCCSC------------------------CT-------------------------T-CCC-SSCCEEECCSSCCSB
T ss_pred             CCCCccCC------------------------cC-------------------------c-ccc-CcccEEEccCCccCC
Confidence            77776542                        11                         0 111 789999999999995


Q ss_pred             CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc
Q 048561          250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ  324 (382)
Q Consensus       250 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  324 (382)
                       ++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|.++..|..
T Consensus       121 -~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          121 -TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             -SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             -Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence             43 58899999999999999995 44 688899999999999999998 6788999999999999999987743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.2e-20  Score=188.86  Aligned_cols=167  Identities=22%  Similarity=0.129  Sum_probs=105.6

Q ss_pred             cCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHH
Q 048561          137 LGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIE  215 (382)
Q Consensus       137 ~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~  215 (382)
                      ..+++|+.|+|++|.++ .+|..+. +++|+.|++++|......+          ..+..+...+..|..+..+ ++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll~~~~~~~~~~~~l~~l-~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII----------LLMRALDPLLYEKETLQYF-STLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTGGGHHHHHHHH-HHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH----------HHHHhcccccCCHHHHHHH-Hhccc
Confidence            45677888888888877 7777766 7778888776553110000          0011111223344444444 44444


Q ss_pred             HH--------------hhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561          216 VL--------------FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCA  281 (382)
Q Consensus       216 L~--------------l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  281 (382)
                      |+              +.+|.+....      ...|+.|++++|.|++ +|. ++.+++|+.|++++|.|+ .+|..++.
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             CcchhhcccchhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence            44              3333332111      1247778888888874 565 777788888888888887 67777888


Q ss_pred             CCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC--CCcc
Q 048561          282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL--PDQR  325 (382)
Q Consensus       282 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~  325 (382)
                      +++|+.|+|++|.|++++ .+..+++|+.|+|++|.|+++  |+.+
T Consensus       485 l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          485 LRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             CCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence            888888888888888754 777788888888888888877  5443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=5.5e-17  Score=140.30  Aligned_cols=84  Identities=18%  Similarity=0.132  Sum_probs=43.5

Q ss_pred             cCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCc-CcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEE
Q 048561          233 FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL-LYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVL  311 (382)
Q Consensus       233 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L  311 (382)
                      .+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.++++. .+..+++|+.|
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL  186 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence            34455555555555554444455555555555555555 33 333 3555555555555555555543 44555555555


Q ss_pred             EccCCCCC
Q 048561          312 DVNRNCIH  319 (382)
Q Consensus       312 ~L~~N~l~  319 (382)
                      ++++|+|.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            55555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=9.5e-16  Score=132.01  Aligned_cols=129  Identities=21%  Similarity=0.280  Sum_probs=81.1

Q ss_pred             EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCc-ccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISP-KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      .++++++++..  ++..+.  .+|++|++++|.+++..+. .++.+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        12 ~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           12 TVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            34555555543  222222  2677777777777644443 366677777777777777766666677777777777777


Q ss_pred             CCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561          150 NFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       150 n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      |.+++..+..+. +++|++|++++|.+++..|..+.. .+|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            777744444343 677777777777777666666665 567777777777665544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=4.5e-19  Score=178.68  Aligned_cols=253  Identities=17%  Similarity=0.093  Sum_probs=154.7

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcC--------------------------cccCCcccCCCCCCCE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKF--------------------------SGTISPKLAQLPYLYE  120 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~p~~l~~l~~L~~  120 (382)
                      .+++.|+++++.+.+  .+..+.++++|+.|+++....                          .+.+|..+..+++|++
T Consensus       220 ~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred             CCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence            357778888776654  334455555666665543211                          1234445555666777


Q ss_pred             EEeecCCCCccCc-ccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC-----------CcCCCcCCcCC-C-C
Q 048561          121 LDISNNKFSGTFP-VAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN-----------NNFMQKLPQNL-G-S  185 (382)
Q Consensus       121 L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~-----------n~l~~~~p~~~-~-~  185 (382)
                      |+|++|.+++... ..+..+++|++|+++++...+.++.... +++|++|++++           |.+++.....+ . .
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            7777666553322 2345666777777762221212222222 57788888773           34433211111 1 2


Q ss_pred             CcchhhhccCcccccccchhHHHhhhhHHHHHhh----ccccCCC-----CchhcccCcCCCccccCCcc--CCCCCCcC
Q 048561          186 TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL----NNLLTGC-----LPYELGFLREARVFDASNNR--LTGPLPCS  254 (382)
Q Consensus       186 ~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~  254 (382)
                      .+|++|++..|.+++..+..+....++|+.|+++    .|.+++.     ++..+.++++|++|++++|.  +++.....
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            5677788877777766666666533677888885    4556543     23335678888888887543  44333333


Q ss_pred             CC-CCCCCCEEeCcCCcCcc-cCchhhcCCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCCC
Q 048561          255 LG-CLEKIERLNLSGNLLYG-QVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYL  321 (382)
Q Consensus       255 ~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~l  321 (382)
                      +. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++.  ...+..+++|+.|+|++|+++..
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            32 36889999999999875 3455667889999999999998753  22345788999999999998764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=3.3e-16  Score=134.93  Aligned_cols=130  Identities=21%  Similarity=0.270  Sum_probs=110.2

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|..+.|....-.    .....++.|++++|.+.+......|+++++|++|++++|.+++..|..|..+++|++|+|++
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78888888753210    01237899999999998832234589999999999999999988899999999999999999


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcC
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKL  179 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~  179 (382)
                      |++++..+..|..+++|++|+|++|++++..|..+. +++|++|++++|.+.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            999988888899999999999999999987777766 899999999999987643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=2.9e-19  Score=180.11  Aligned_cols=110  Identities=15%  Similarity=0.023  Sum_probs=60.4

Q ss_pred             hhHHHHHhhccccCCCCchhccc-CcCCCccccC----CccCCCC-----CCcCCCCCCCCCEEeCcCCc--CcccCchh
Q 048561          211 STLIEVLFLNNLLTGCLPYELGF-LREARVFDAS----NNRLTGP-----LPCSLGCLEKIERLNLSGNL--LYGQVPEV  278 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~~  278 (382)
                      ++|+.|++..|.+++.....+.. +++|+.|+++    .|.+++.     ++..+.++++|++|++++|.  +++..+..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            34444555444444433333333 5566666664    4445432     11123346667777775432  44433333


Q ss_pred             hc-CCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCC
Q 048561          279 LC-ALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       279 ~~-~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      +. .+++|++|++++|++++.  ...+..+++|+.|+|++|.|+.
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence            33 367788888888877652  2234667788888888887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=6e-17  Score=136.28  Aligned_cols=136  Identities=26%  Similarity=0.210  Sum_probs=105.3

Q ss_pred             CCCCEEeCCCCcCC-CcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccc
Q 048561          163 QTLDVLFLNNNNFM-QKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFD  241 (382)
Q Consensus       163 ~~L~~L~L~~n~l~-~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  241 (382)
                      ++|++|++++|.++ +.+|..+                       ..+ ++|+.|++++|.+.+.  ..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-----------------------~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~   77 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-----------------------AEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLE   77 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-----------------------GGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHH-----------------------HhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEE
Confidence            56777777777765 3444433                       333 4555556666665544  5677889999999


Q ss_pred             cCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEEcccccCcccCC----cccCCCCCCEEEccCC
Q 048561          242 ASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLSLSNNYFTGVGP----LCRKLIKNGVLDVNRN  316 (382)
Q Consensus       242 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~N  316 (382)
                      +++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++.++    .+..+++|+.|++++|
T Consensus        78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            9999999767777777899999999999998532 2678889999999999999998877    6788999999999999


Q ss_pred             CCCCCCCc
Q 048561          317 CIHYLPDQ  324 (382)
Q Consensus       317 ~l~~lp~~  324 (382)
                      .++++|+.
T Consensus       158 ~~~~~~~~  165 (168)
T 2ell_A          158 EDQEAPDS  165 (168)
T ss_dssp             TSCBCCSS
T ss_pred             Chhhcccc
Confidence            99998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.7e-16  Score=163.49  Aligned_cols=171  Identities=16%  Similarity=0.181  Sum_probs=121.6

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ...++.|+|++|.+..  ++..+.++++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|
T Consensus       223 l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             CCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            4578999999999985  4455669999999999999999 89999999999999999999999 889999999999999


Q ss_pred             EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCC--cchhhhccCcccccccchhHHHhhhhHHHHHhhcc-
Q 048561          146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGST--PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNN-  221 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n-  221 (382)
                      +|++|.|+ .+|..+. +++|++|+|++|.+++.+|..+...  ....+++++|.+++.+|..+       ..|+++.| 
T Consensus       299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l-------~~l~l~~n~  370 (727)
T 4b8c_D          299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER-------RFIEINTDG  370 (727)
T ss_dssp             ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------
T ss_pred             ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc-------ceeEeeccc
Confidence            99999998 8888766 8999999999999999988887663  33467899999999888644       44455554 


Q ss_pred             -------ccCCCCchhcccCcCCCccccCCccCC
Q 048561          222 -------LLTGCLPYELGFLREARVFDASNNRLT  248 (382)
Q Consensus       222 -------~l~~~~~~~~~~l~~L~~L~Ls~n~l~  248 (382)
                             .+.+..+..+..+.+++...+++|-+.
T Consensus       371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -------------------------------CCC
T ss_pred             ccccccCCccccccchhhcccccceeeeeccccc
Confidence                   233333344455666666777777663

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=7.9e-15  Score=124.35  Aligned_cols=110  Identities=16%  Similarity=0.104  Sum_probs=59.3

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeC
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFL  170 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L  170 (382)
                      ++|+.|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            4556666666666544444455566666666666666543334455566666666666666532222222 556666666


Q ss_pred             CCCcCCCcCCcCCCC-CcchhhhccCcccccc
Q 048561          171 NNNNFMQKLPQNLGS-TPALYLTFANNKFTGS  201 (382)
Q Consensus       171 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~  201 (382)
                      ++|.+++..+..+.. .+|++|++++|.+.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            666655444433343 4556666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.4e-15  Score=127.75  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.|++++|.+....++..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            6788888888887223566677888888888888888754  67788888888888888888667777777888888888


Q ss_pred             cCCCCCCCCC--cccc-cCCCCEEeCCCCcCCCcCC---cCCCC-CcchhhhccCcccccccc
Q 048561          148 RFNFFTGSVP--PQVF-MQTLDVLFLNNNNFMQKLP---QNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       148 s~n~l~~~~p--~~~~-l~~L~~L~L~~n~l~~~~p---~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      ++|.++ .++  ..+. +++|++|++++|.+++..+   ..+.. .+|++|++++|.+. .+|
T Consensus       103 s~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A          103 SGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             BSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred             cCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence            888887 443  3333 7888888888888775544   24444 66777777777665 444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=7e-15  Score=126.66  Aligned_cols=91  Identities=26%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCC
Q 048561          230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKN  308 (382)
Q Consensus       230 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L  308 (382)
                      .+..+++|++|++++|.|++..+..|..+++|++|++++|.|++..+..+..+++|++|+|++|.|+.+++ .+..+++|
T Consensus        49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  128 (193)
T 2wfh_A           49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL  128 (193)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred             HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence            34455556666666666665555556666666666666666665555556666666666666666665554 35556666


Q ss_pred             CEEEccCCCCCC
Q 048561          309 GVLDVNRNCIHY  320 (382)
Q Consensus       309 ~~L~L~~N~l~~  320 (382)
                      +.|++++|.+..
T Consensus       129 ~~L~L~~N~~~C  140 (193)
T 2wfh_A          129 SHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSCEEC
T ss_pred             cEEEeCCCCeec
Confidence            666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=3.2e-15  Score=123.01  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             CCCCEEEcCCCcCc-ccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEe
Q 048561           92 PDLSLFHANSNKFS-GTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLF  169 (382)
Q Consensus        92 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~  169 (382)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+. +++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 45555566666666666666666633  4556666666666666666644555444 56666666


Q ss_pred             CCCCcCC
Q 048561          170 LNNNNFM  176 (382)
Q Consensus       170 L~~n~l~  176 (382)
                      +++|.++
T Consensus        95 ls~N~i~  101 (149)
T 2je0_A           95 LSGNKIK  101 (149)
T ss_dssp             CTTSCCC
T ss_pred             CCCCcCC
Confidence            6666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=5.8e-15  Score=121.45  Aligned_cols=126  Identities=17%  Similarity=0.202  Sum_probs=101.1

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|++++|.+....++..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            47999999999998224667789999999999999999965  7799999999999999999977888888899999999


Q ss_pred             ecCCCCCCC-CCcccc-cCCCCEEeCCCCcCCCcCC---cCCCC-Ccchhhhcc
Q 048561          147 IRFNFFTGS-VPPQVF-MQTLDVLFLNNNNFMQKLP---QNLGS-TPALYLTFA  194 (382)
Q Consensus       147 Ls~n~l~~~-~p~~~~-l~~L~~L~L~~n~l~~~~p---~~~~~-~~L~~L~l~  194 (382)
                      +++|.+++. .+..+. +++|++|++++|.+++..+   ..+.. .+|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999842 224444 8999999999999876543   23332 455555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=5.2e-14  Score=121.16  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=79.5

Q ss_pred             EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561           71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN  150 (382)
Q Consensus        71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n  150 (382)
                      .++++++++.. + +..+  .++|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus        14 ~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLKV-L-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCSS-C-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCCc-C-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555554 2 2222  246777777777776 56667777777777777777777555566777777777777777


Q ss_pred             CCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc
Q 048561          151 FFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT  199 (382)
Q Consensus       151 ~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~  199 (382)
                      .+++..+..+. +++|++|+|++|.++...+..+.. .+|++|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77744333333 677777777777776555555554 56777777777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=1.6e-17  Score=167.37  Aligned_cols=131  Identities=15%  Similarity=0.066  Sum_probs=71.0

Q ss_pred             cchhhhccCcccccccchhHHHhhhhHHHHHhh--c----cccCCC-----CchhcccCcCCCccccCCccCCCCCCcCC
Q 048561          187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL--N----NLLTGC-----LPYELGFLREARVFDASNNRLTGPLPCSL  255 (382)
Q Consensus       187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  255 (382)
                      +|++|.+..|.+++.....+....++|+.|+++  +    +.++..     ++..+..+++|+.|++++ .+++.....+
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            344444444444433333333222455666665  2    233311     111244556666666655 4443222223


Q ss_pred             CC-CCCCCEEeCcCCcCcccCchhh-cCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCC
Q 048561          256 GC-LEKIERLNLSGNLLYGQVPEVL-CALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCI  318 (382)
Q Consensus       256 ~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l  318 (382)
                      .. +++|+.|++++|.+++.....+ ..+++|++|+|++|.+++...  ....+++|+.|++++|++
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            32 5677778887777765444443 556778888888887754321  234567788888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=2.8e-15  Score=140.11  Aligned_cols=244  Identities=15%  Similarity=0.098  Sum_probs=142.2

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCC--------CCCCCEEEeecCCCCccCcccccC
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQ--------LPYLYELDISNNKFSGTFPVAILG  138 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~~  138 (382)
                      .+|+.|||++|++..  ....-+.++.++.+.+..+.+.   ..+|.+        +++|+.|+|.+ .++..-...|.+
T Consensus        49 ~~L~~LdLs~n~i~~--~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~  122 (329)
T 3sb4_A           49 PSLKVLDISNAEIKM--YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG  122 (329)
T ss_dssp             TTCCEEEEEEEEECC--EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred             ccCeEEecCcceeEE--ecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence            368999999998872  1111122333445555555332   345555        88888888888 777455556778


Q ss_pred             CCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcC----CCcCCcCCCC-Ccch-hhhccCcccccccchhHHHh-
Q 048561          139 KNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF----MQKLPQNLGS-TPAL-YLTFANNKFTGSIPRSIGKL-  209 (382)
Q Consensus       139 l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l----~~~~p~~~~~-~~L~-~L~l~~n~l~~~lp~~l~~l-  209 (382)
                      +++|+.|+++.|.+. .++...+  +.++..+.+..+..    .......+.. ..++ .+.+...   +.++..+... 
T Consensus       123 ~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~  198 (329)
T 3sb4_A          123 CDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG  198 (329)
T ss_dssp             CTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT
T ss_pred             CcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcc
Confidence            888888888888877 5665554  34445554443211    1111111111 1222 1111111   1222221111 


Q ss_pred             --hhhHHHHHhhccccCCCCchhc-ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCC
Q 048561          210 --SSTLIEVLFLNNLLTGCLPYEL-GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV  286 (382)
Q Consensus       210 --~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  286 (382)
                        ..++..+.+.++ +.......+ ..+++|+.+++++|.++.....+|.++.+|+.+++.+| ++.....+|..+.+|+
T Consensus       199 ~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          199 LQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             CCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence              011111111111 000000111 23688899999988888666667888889999999887 7756677888888898


Q ss_pred             -EEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCC
Q 048561          287 -NLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       287 -~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                       .+++.+ .++.+.+ .+..+++|+.+++++|.++.+++
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence             899988 7777654 67888899999998888888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=8.7e-14  Score=117.87  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|.++.|....-.    .....++.|++++|++.+ ..+..|+++++|++|++++|.+++..+..++.+++|++|++++
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            78999999753211    113578999999999997 5667789999999999999999977667789999999999999


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcCC
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKLP  180 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~p  180 (382)
                      |.+++..+..+..+++|++|++++|.++ .+|... . +++|++|++++|.+.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999766667889999999999999999 555543 4 8999999999999876543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.48  E-value=4.3e-16  Score=156.83  Aligned_cols=87  Identities=18%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             cCcCCCccccC--C----ccCCCCC-----CcCCCCCCCCCEEeCcCCcCcccCchhhcC-CCCCCEEEcccccCcccCC
Q 048561          233 FLREARVFDAS--N----NRLTGPL-----PCSLGCLEKIERLNLSGNLLYGQVPEVLCA-LDNLVNLSLSNNYFTGVGP  300 (382)
Q Consensus       233 ~l~~L~~L~Ls--~----n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~~  300 (382)
                      .+++|+.|+++  +    +.+++..     +..+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++...
T Consensus       395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            46677777777  3    3444211     11134567788888876 555444445544 7889999999998876322


Q ss_pred             -cc-cCCCCCCEEEccCCCCCC
Q 048561          301 -LC-RKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       301 -~~-~~l~~L~~L~L~~N~l~~  320 (382)
                       .+ ..+++|+.|+|++|.+++
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCH
T ss_pred             HHHHhcCCCcCEEECcCCCCcH
Confidence             22 568899999999998854

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=2.4e-14  Score=133.77  Aligned_cols=218  Identities=11%  Similarity=0.102  Sum_probs=127.7

Q ss_pred             CCCCCEEEcCCCcCc--ccCCcccCCCCCCCEEEeecCCCCccCcccccC--------CCCCcEEEecCCCCCCCCCccc
Q 048561           91 LPDLSLFHANSNKFS--GTISPKLAQLPYLYELDISNNKFSGTFPVAILG--------KNDLSFLDIRFNFFTGSVPPQV  160 (382)
Q Consensus        91 l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~  160 (382)
                      +++|+.|+|++|.+.  ....   +.++.++.+.+..|.+.   ...|.+        +++|+.|+|.. .++ .+++..
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred             hccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence            667777777777766  2211   12223455555555433   345666        99999999998 777 676655


Q ss_pred             c--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc---ccc-hhHHHhhhhHH-HHHhhccccCCCCchhc-
Q 048561          161 F--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG---SIP-RSIGKLSSTLI-EVLFLNNLLTGCLPYEL-  231 (382)
Q Consensus       161 ~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~---~lp-~~l~~l~~~L~-~L~l~~n~l~~~~~~~~-  231 (382)
                      +  +++|+.|++.+|.+....+.+|.. .++..+....+....   .+. ..+.+. ..|+ .+.+..   .+.++..+ 
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~-~~L~~~i~~~~---~~~l~~~~~  195 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG-EPLETTIQVGA---MGKLEDEIM  195 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES-CCCEEEEEECT---TCCHHHHHH
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc-cccceeEEecC---CCcHHHHHh
Confidence            4  789999999999887666666665 334433332211100   000 000000 0000 000000   00011100 


Q ss_pred             ---ccCcCCCccccCCccCCCCCCcCC-CCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCC
Q 048561          232 ---GFLREARVFDASNNRLTGPLPCSL-GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLI  306 (382)
Q Consensus       232 ---~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~  306 (382)
                         ....+++.+.+.++-.. .....+ ..+++|+.+++++|.++.....+|..+.+|+.++|.+| ++.+.. .+..+.
T Consensus       196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~  273 (329)
T 3sb4_A          196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG  273 (329)
T ss_dssp             HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence               12344555555443111 000111 13689999999999999666778999999999999998 877765 689999


Q ss_pred             CCC-EEEccCCCCCCCCC
Q 048561          307 KNG-VLDVNRNCIHYLPD  323 (382)
Q Consensus       307 ~L~-~L~L~~N~l~~lp~  323 (382)
                      +|+ .+++.+ .++.+++
T Consensus       274 ~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          274 RLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             TCCEEEEECT-TCCEECT
T ss_pred             hccEEEEEcc-cceEEch
Confidence            999 999988 7888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=8.5e-14  Score=117.91  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             ccCcCCCccccCCccCCCCCCc--CCCCCCCCCEEeCcCCcCcccCchh----hcCCCCCCEEEcccccCc
Q 048561          232 GFLREARVFDASNNRLTGPLPC--SLGCLEKIERLNLSGNLLYGQVPEV----LCALDNLVNLSLSNNYFT  296 (382)
Q Consensus       232 ~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~  296 (382)
                      ..+++|++|++++|.++ .+|.  .+..+++|+.|++++|.+. .+|..    +..+++|+.|++++|.+.
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            34445555555555554 2333  4445555555555555554 33332    444455555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.1e-16  Score=136.79  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=86.7

Q ss_pred             CCCCCEEEcCCCcCcccCCc------ccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cC
Q 048561           91 LPDLSLFHANSNKFSGTISP------KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQ  163 (382)
Q Consensus        91 l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~  163 (382)
                      ...++.++++.+.+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+. ++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34444445555555544443      66666777777777777663 55 5666667777777777666 5555443 45


Q ss_pred             CCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccC
Q 048561          164 TLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS  243 (382)
Q Consensus       164 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  243 (382)
                      +|++|++++|.+++                        +|                          .+..+++|++|+++
T Consensus        94 ~L~~L~L~~N~l~~------------------------l~--------------------------~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           94 TLEELWISYNQIAS------------------------LS--------------------------GIEKLVNLRVLYMS  123 (198)
T ss_dssp             HCSEEEEEEEECCC------------------------HH--------------------------HHHHHHHSSEEEES
T ss_pred             cCCEEECcCCcCCc------------------------CC--------------------------ccccCCCCCEEECC
Confidence            66666666555431                        11                          12334456666666


Q ss_pred             CccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCch----------hhcCCCCCCEEEcccccCcc
Q 048561          244 NNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPE----------VLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       244 ~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~  297 (382)
                      +|.+++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +|.++.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            666653211 2455666677777777766554433          256677777776  555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=6.2e-13  Score=127.42  Aligned_cols=228  Identities=11%  Similarity=0.053  Sum_probs=164.4

Q ss_pred             CCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-
Q 048561           83 TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-  161 (382)
Q Consensus        83 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-  161 (382)
                      +...+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .++..-...|.++.+|+.+++..|.++ .++...+ 
T Consensus       127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~  201 (401)
T 4fdw_A          127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV  201 (401)
T ss_dssp             ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT
T ss_pred             ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe
Confidence            345566664 7888888766 665556677774 688888875 566455567888888888888888887 6666555 


Q ss_pred             cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCcc
Q 048561          162 MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF  240 (382)
Q Consensus       162 l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  240 (382)
                      ..+|+.+.+..+ +......+|.. .+|+.+++..+ ++ .++...+.- .+|+.+.+. +.++..-...|.++++|+.+
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV  276 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence            678888888754 55555556665 57888887764 33 333332222 456666663 44555567788999999999


Q ss_pred             ccCCccCC-----CCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561          241 DASNNRLT-----GPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN  314 (382)
Q Consensus       241 ~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~  314 (382)
                      ++.+|.+.     .....+|.++++|+.+++.+ .++.....+|..+.+|+.+.|..| ++.+.. .+..+ +|+.+++.
T Consensus       277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence            99888764     34556788999999999994 577566778889999999999655 776654 67788 99999999


Q ss_pred             CCCCCCCCC
Q 048561          315 RNCIHYLPD  323 (382)
Q Consensus       315 ~N~l~~lp~  323 (382)
                      +|.+..+++
T Consensus       354 ~n~~~~l~~  362 (401)
T 4fdw_A          354 GTTPPQVFE  362 (401)
T ss_dssp             CSSCCBCCC
T ss_pred             CCCCccccc
Confidence            998877764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=1.4e-12  Score=109.83  Aligned_cols=104  Identities=18%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.++++++.+..  ++..+  .++|++|++++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        12 ~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467778888876  33333  37899999999999988888899999999999999999966666678999999999999


Q ss_pred             CCCCCCCCcccc-cCCCCEEeCCCCcCCC
Q 048561          150 NFFTGSVPPQVF-MQTLDVLFLNNNNFMQ  177 (382)
Q Consensus       150 n~l~~~~p~~~~-l~~L~~L~L~~n~l~~  177 (382)
                      |++++..+..+. +++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999944343344 8899999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=1.8e-13  Score=115.89  Aligned_cols=125  Identities=14%  Similarity=0.167  Sum_probs=92.0

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCC-CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQL-PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .++.|++++|++..  ++. +..+ ++|++|++++|.+++.  ..++.+++|++|++++|.+++..+..+..+++|++|+
T Consensus        20 ~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           20 RDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             SCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            68889999998886  344 4444 4899999999988854  5788888999999999998844334457888999999


Q ss_pred             ecCCCCCCCCCc--ccc-cCCCCEEeCCCCcCCCcCCcC----CCC-CcchhhhccCcccc
Q 048561          147 IRFNFFTGSVPP--QVF-MQTLDVLFLNNNNFMQKLPQN----LGS-TPALYLTFANNKFT  199 (382)
Q Consensus       147 Ls~n~l~~~~p~--~~~-l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~~L~l~~n~l~  199 (382)
                      +++|.++ .+|.  .+. +++|++|++++|.++. +|..    +.. .+|++|++++|.+.
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999886 6665  333 7889999999888863 3432    333 56777777776544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=4.4e-13  Score=113.36  Aligned_cols=104  Identities=18%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             HhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCc
Q 048561          217 LFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT  296 (382)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  296 (382)
                      ++++|.+. .+|..+.  ++|++|++++|.|++..|..|..+++|++|+|++|+|++..+..+..+++|++|+|++|+|+
T Consensus        18 ~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           18 NCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            34444443 3444332  78899999999999887888999999999999999999665666788999999999999999


Q ss_pred             ccCCc-ccCCCCCCEEEccCCCCCCCCC
Q 048561          297 GVGPL-CRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       297 ~~~~~-~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      ++++. +..+++|+.|+|++|.+...+.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             eeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88774 8889999999999999998775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=4.7e-16  Score=134.52  Aligned_cols=155  Identities=18%  Similarity=0.153  Sum_probs=111.6

Q ss_pred             cCCCCCCCEEEeecCCCCccCcc------cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC
Q 048561          112 LAQLPYLYELDISNNKFSGTFPV------AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS  185 (382)
Q Consensus       112 l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~  185 (382)
                      +.....++.++++.+.+.+.+|.      .+..+++|++|++++|.++ .+|....+++|++|++++|.++         
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~---------   83 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK---------   83 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEEC---------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcc---------
Confidence            34445666666666666665554      6777777788888777777 3562222677777777666543         


Q ss_pred             CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEe
Q 048561          186 TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN  265 (382)
Q Consensus       186 ~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  265 (382)
                                     .+|                         ..+..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus        84 ---------------~l~-------------------------~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           84 ---------------KIE-------------------------NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             ---------------SCS-------------------------SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             ---------------ccc-------------------------chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence                           222                         223344678999999999985 45 577889999999


Q ss_pred             CcCCcCcccCc-hhhcCCCCCCEEEcccccCcccCCc-----------ccCCCCCCEEEccCCCCCC
Q 048561          266 LSGNLLYGQVP-EVLCALDNLVNLSLSNNYFTGVGPL-----------CRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       266 L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~l~~L~~L~L~~N~l~~  320 (382)
                      +++|.+++..+ ..+..+++|++|++++|.+++.++.           +..+++|+.||  +|.++.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999984332 4788999999999999999886543           78899999987  776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=1.3e-12  Score=125.10  Aligned_cols=235  Identities=14%  Similarity=0.088  Sum_probs=117.5

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.+.+..+ +.. +...+|.+ .+|+.+.+.. .++..-..+|.++++|+.+++.+|+++ .++.......+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~-I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKS-IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCE-ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC-ccE-ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence            3445555443 332 33344544 3466666654 444344455666666666666666665 33333333456666666


Q ss_pred             cCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccc-hhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP-RSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp-~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ..+ ++ .++...+  +.+|+.+.+..+ ++.....+|...+|+.+.+. +.+. .++ ..|.+. .+|+.+.+.+|.+.
T Consensus       211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c-~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYC-PELAEVTTYGSTFN  284 (401)
T ss_dssp             CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTC-TTCCEEEEESSCCC
T ss_pred             CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCC-CCCCEEEeCCcccc
Confidence            533 44 4444333  456666666543 33333444444555555552 2333 222 233333 55555555555443


Q ss_pred             -----CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561          225 -----GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       225 -----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  299 (382)
                           ......|.++++|+.+.+.. .++.....+|.++.+|+.+.+..| ++.....+|..+ +|+.+++.+|.+..+.
T Consensus       285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence                 23344556666666666653 344334455556666666666443 443444555555 6666666666555433


Q ss_pred             C-cccCCC-CCCEEEccCC
Q 048561          300 P-LCRKLI-KNGVLDVNRN  316 (382)
Q Consensus       300 ~-~~~~l~-~L~~L~L~~N  316 (382)
                      . .+..++ +++.|.+..+
T Consensus       362 ~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          362 EKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CSSCCCSCTTCCEEEECGG
T ss_pred             cccccCCCCCccEEEeCHH
Confidence            3 233342 4455555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=5.6e-13  Score=112.27  Aligned_cols=105  Identities=21%  Similarity=0.183  Sum_probs=85.3

Q ss_pred             HHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561          216 VLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF  295 (382)
Q Consensus       216 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (382)
                      +++++|.++. +|..+  .++|++|++++|.|++..+..|..+++|++|++++|+|++..+..+..+++|++|+|++|+|
T Consensus        14 l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           14 VDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            3445555542 44333  37789999999999987788899999999999999999977677788899999999999999


Q ss_pred             cccCC-cccCCCCCCEEEccCCCCCCCCC
Q 048561          296 TGVGP-LCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       296 ~~~~~-~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +++++ .+..+++|+.|+|++|.++..++
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            98877 47889999999999999987664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=3e-12  Score=108.22  Aligned_cols=102  Identities=21%  Similarity=0.246  Sum_probs=84.4

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.++++++++..  ++..+  .++|++|++++|.+++..|..|+.+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~~--iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCc--cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            578889998876  34333  38999999999999988888999999999999999999965555578899999999999


Q ss_pred             CCCCCCCCcc-cc-cCCCCEEeCCCCcCC
Q 048561          150 NFFTGSVPPQ-VF-MQTLDVLFLNNNNFM  176 (382)
Q Consensus       150 n~l~~~~p~~-~~-l~~L~~L~L~~n~l~  176 (382)
                      |+++ .+|.. +. +++|++|++++|.+.
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            9999 55554 44 889999999999875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.26  E-value=2.8e-11  Score=113.52  Aligned_cols=96  Identities=21%  Similarity=0.171  Sum_probs=81.1

Q ss_pred             CCCCCCCccccCCCCCCCEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCC
Q 048561           78 ELAAPTLDGFIDQLPDLSLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSV  156 (382)
Q Consensus        78 ~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  156 (382)
                      ++..  +|. +..+++|++|+|++ |.+++..+..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|+ .+
T Consensus        20 ~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~   95 (347)
T 2ifg_A           20 ALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL   95 (347)
T ss_dssp             CCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred             CCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence            5555  455 88999999999996 9999877788999999999999999999888888999999999999999999 55


Q ss_pred             Ccccc-cCCCCEEeCCCCcCCC
Q 048561          157 PPQVF-MQTLDVLFLNNNNFMQ  177 (382)
Q Consensus       157 p~~~~-l~~L~~L~L~~n~l~~  177 (382)
                      |...+ ...|+.|+|.+|.+..
T Consensus        96 ~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           96 SWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSTTTCSCCCCEEECCSSCCCC
T ss_pred             CHHHcccCCceEEEeeCCCccC
Confidence            55443 4449999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2.2e-11  Score=114.30  Aligned_cols=104  Identities=17%  Similarity=0.056  Sum_probs=83.0

Q ss_pred             hhcc-ccCCCCchhcccCcCCCccccCC-ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561          218 FLNN-LLTGCLPYELGFLREARVFDASN-NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF  295 (382)
Q Consensus       218 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  295 (382)
                      ++++ .++ .+|. +..+++|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|
T Consensus        15 ~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           15 CTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             cCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            3444 455 3566 78888899999986 899877777888999999999999999988888888999999999999999


Q ss_pred             cccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561          296 TGVGPLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       296 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +++++.......|+.|+|.+|.|+...+
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             ceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9887754333349999999999887543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=3.4e-13  Score=127.96  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=84.2

Q ss_pred             CCCCEEEeecCCCCccCcccc----c-CCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCC-----
Q 048561          116 PYLYELDISNNKFSGTFPVAI----L-GKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNL-----  183 (382)
Q Consensus       116 ~~L~~L~Ls~n~l~~~~p~~l----~-~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~-----  183 (382)
                      +.|++|+|++|.++......+    . ...+|++|+|++|.++......+.  +.+|++|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456666666666653222222    2 124666666666666532222221  4566666666666543222211     


Q ss_pred             -CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC----CCcCCCCC
Q 048561          184 -GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP----LPCSLGCL  258 (382)
Q Consensus       184 -~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l  258 (382)
                       ....|++|++++|.++..-...                     +...+...++|++|+|++|.|++.    +...+...
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~---------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAV---------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHH---------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             hcCCccceeeCCCCCCChHHHHH---------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence             1133445555555443110000                     112334556677777777776532    23344555


Q ss_pred             CCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCccc
Q 048561          259 EKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFTGV  298 (382)
Q Consensus       259 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~  298 (382)
                      ++|++|+|++|.|+..    +...+...++|++|+|++|.|+..
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            6777777777777642    233444557777777777777653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.14  E-value=3e-13  Score=128.40  Aligned_cols=161  Identities=18%  Similarity=0.045  Sum_probs=109.0

Q ss_pred             CCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCcCCcCCCC--CcchhhhccCcccccccchhHHHhh
Q 048561          139 KNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQKLPQNLGS--TPALYLTFANNKFTGSIPRSIGKLS  210 (382)
Q Consensus       139 l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~~lp~~l~~l~  210 (382)
                      ++.|++|+|++|.++......+.      ..+|++|+|++|.++......+..  .++++|++++|.++..-...+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence            36788899998888743222222      157888888888775432222222  35666666666655221111111  


Q ss_pred             hhHHHHHhhccccCCCCchhc-ccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcC
Q 048561          211 STLIEVLFLNNLLTGCLPYEL-GFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCA  281 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~  281 (382)
                                         .+ ...++|+.|+|++|.|+..    ++..+...++|++|+|++|.|...    +...+..
T Consensus       149 -------------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~  209 (372)
T 3un9_A          149 -------------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR  209 (372)
T ss_dssp             -------------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred             -------------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence                               11 2356899999999998742    334446778999999999999853    3456677


Q ss_pred             CCCCCEEEcccccCcccC-----CcccCCCCCCEEEccCCCCCC
Q 048561          282 LDNLVNLSLSNNYFTGVG-----PLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       282 l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      .++|++|+|++|.|+...     ..+...++|+.|+|++|.|+.
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            889999999999998642     235567899999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2.7e-09  Score=100.55  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             ceeEEEcCCCCCCCCCC-------ccccCCCCCCCEEEcCCCcCc---------ccCCcccCCCCCCCEEEeecCCCCcc
Q 048561           68 ALASIDFNGFELAAPTL-------DGFIDQLPDLSLFHANSNKFS---------GTISPKLAQLPYLYELDISNNKFSGT  131 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~~  131 (382)
                      .++.|.+......+...       ...+..+++|+.|.+......         +.+...+..+++|+.|+|++|.-. .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            56777777554432111       222446788888888654321         123344566788999999887311 2


Q ss_pred             CcccccCCCCCcEEEecCCCCCCCCCccc---ccCCCCEEeCC
Q 048561          132 FPVAILGKNDLSFLDIRFNFFTGSVPPQV---FMQTLDVLFLN  171 (382)
Q Consensus       132 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~l~~L~~L~L~  171 (382)
                      ++. + .+++|++|+|..+.+.......+   .+++|++|+|+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            333 3 37889999988887653322222   26788888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=1.6e-08  Score=95.28  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             CCCCCCEEeCcCCcCcccCchhhc---CCCCCCEEEcccccCccc-----CCcccCCCCCCEEEccCCCCCC
Q 048561          257 CLEKIERLNLSGNLLYGQVPEVLC---ALDNLVNLSLSNNYFTGV-----GPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       257 ~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                      .+++|+.|++.+|.+.+..+..+.   .+++|++|+|+.|.+++.     ...+..+++|+.|+|++|.|+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            356777777777776543322222   356777777777777652     1223456677777777776554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.54  E-value=1.8e-07  Score=89.17  Aligned_cols=83  Identities=6%  Similarity=-0.015  Sum_probs=51.3

Q ss_pred             hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCC
Q 048561          230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKN  308 (382)
Q Consensus       230 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L  308 (382)
                      .|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++.+.. .+..+.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            4556666777666544 43333455666777777777543 55344566777777777777655 555443 56677777


Q ss_pred             CEEEccC
Q 048561          309 GVLDVNR  315 (382)
Q Consensus       309 ~~L~L~~  315 (382)
                      +.+++..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            7777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.45  E-value=7.9e-07  Score=84.64  Aligned_cols=91  Identities=5%  Similarity=0.033  Sum_probs=56.2

Q ss_pred             hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCC
Q 048561          229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIK  307 (382)
Q Consensus       229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~  307 (382)
                      .+|.++.+|+.+.+..+..+ ....+|.++..|+.+.+. +.++.....+|..+.+|+.+++..+ ++.+.. .+..+.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            45666777777777655433 344556667777777775 3444344556677777777777643 555443 5667777


Q ss_pred             CCEEEccCCCCCCCCC
Q 048561          308 NGVLDVNRNCIHYLPD  323 (382)
Q Consensus       308 L~~L~L~~N~l~~lp~  323 (382)
                      |+.+.+..+ ++.+.+
T Consensus       336 L~~i~ip~s-v~~I~~  350 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPE  350 (394)
T ss_dssp             CCEEEECTT-CCBCCG
T ss_pred             CCEEEECcc-cCEEhH
Confidence            777777533 665553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.42  E-value=6.8e-07  Score=85.08  Aligned_cols=215  Identities=11%  Similarity=0.009  Sum_probs=122.4

Q ss_pred             cccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC------------
Q 048561           86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT------------  153 (382)
Q Consensus        86 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------  153 (382)
                      .+|.++.+|+.+.+.++. ......+|.++.+|+.+++..+ ++..-...+.++..|+.+.+..+...            
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~  233 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK  233 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence            456667777777776543 2244455666677777766554 33222334445555555554433221            


Q ss_pred             --------CCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccc
Q 048561          154 --------GSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNL  222 (382)
Q Consensus       154 --------~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~  222 (382)
                              ..+....+  +..|+.+.+..+.. ......+.. ..++.+....+.    ++...+....+|+.+.+.++ 
T Consensus       234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             EEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-
T ss_pred             eEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee----eccccccccccccccccccc-
Confidence                    01211111  34455555544322 122222222 233333332221    22222212245666555443 


Q ss_pred             cCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc
Q 048561          223 LTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC  302 (382)
Q Consensus       223 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  302 (382)
                      +...-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F  384 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDF  384 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGB
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhhee
Confidence            44445667899999999999754 66455678999999999999877 66566778999999999999765 34333467


Q ss_pred             cCCCCCCEE
Q 048561          303 RKLIKNGVL  311 (382)
Q Consensus       303 ~~l~~L~~L  311 (382)
                      .++.+|+.+
T Consensus       385 ~~c~~L~~I  393 (394)
T 4fs7_A          385 EDTTKFKWI  393 (394)
T ss_dssp             CTTCEEEEE
T ss_pred             cCCCCCcEE
Confidence            777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=6.3e-08  Score=86.87  Aligned_cols=63  Identities=29%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             cCcCCCccccCCccCCC--CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC--CCCEEEcccccCcc
Q 048561          233 FLREARVFDASNNRLTG--PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD--NLVNLSLSNNYFTG  297 (382)
Q Consensus       233 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~  297 (382)
                      .+++|+.|+|++|.|++  .++..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            34555555555555554  2223333455555555555555532  1122222  55555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.33  E-value=1.2e-06  Score=83.32  Aligned_cols=103  Identities=7%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEc
Q 048561          211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL  290 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  290 (382)
                      ..|+.+.+.++.. ..-...|.++.+|+.+.+. +.++.....+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+
T Consensus       265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            3444444433322 2344567888999999986 3455445567888999999999865 55455678889999999999


Q ss_pred             ccccCcccCC-cccCCCCCCEEEccCCC
Q 048561          291 SNNYFTGVGP-LCRKLIKNGVLDVNRNC  317 (382)
Q Consensus       291 ~~N~l~~~~~-~~~~l~~L~~L~L~~N~  317 (382)
                      ..+ ++.+.. .+.++.+|+.+++.+|.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            654 666654 68889999999988763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=7.1e-07  Score=79.97  Aligned_cols=66  Identities=20%  Similarity=0.333  Sum_probs=34.3

Q ss_pred             CCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEecCCCCCCCCCcccccC--CCCEEeCCCCcCCCcCC
Q 048561          114 QLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQ--TLDVLFLNNNNFMQKLP  180 (382)
Q Consensus       114 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~--~L~~L~L~~n~l~~~~p  180 (382)
                      ++++|+.|+|++|+|++  .++..+..+++|++|+|++|.|++ +.....+.  +|++|+|++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccC
Confidence            45566666666666654  233444455666666666666653 22111122  56666666666554433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=1.6e-07  Score=79.72  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             cCCCCCCCEEEcCCC-cCcc----cCCcccCCCCCCCEEEeecCCCCcc----CcccccCCCCCcEEEecCCCCC
Q 048561           88 IDQLPDLSLFHANSN-KFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  153 (382)
                      +...+.|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...+.|++|+|++|.|.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            334445555555554 4432    1223334444555555555555421    1222333344555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.20  E-value=1.1e-07  Score=80.74  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             cceeEEEcCCC-CCCCC---CCccccCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCcc----Ccc
Q 048561           67 IALASIDFNGF-ELAAP---TLDGFIDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGT----FPV  134 (382)
Q Consensus        67 ~~l~~L~L~~~-~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  134 (382)
                      ..++.|+|++| .+...   .+...+...++|++|+|++|.+...    +...+...+.|++|+|++|.|+..    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            36899999999 87652   1334466778999999999998743    344555668899999999999843    456


Q ss_pred             cccCCCCCcEEEe--cCCCCCCCCCcccc-----cCCCCEEeCCCCcCC
Q 048561          135 AILGKNDLSFLDI--RFNFFTGSVPPQVF-----MQTLDVLFLNNNNFM  176 (382)
Q Consensus       135 ~l~~l~~L~~L~L--s~n~l~~~~p~~~~-----l~~L~~L~L~~n~l~  176 (382)
                      .+...+.|++|+|  ++|.+.......+.     .++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6777889999999  88998743222221     477888888888653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.96  E-value=3.5e-05  Score=72.65  Aligned_cols=92  Identities=11%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCC
Q 048561          228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLI  306 (382)
Q Consensus       228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~  306 (382)
                      ...+.++..|+.+.+..+ ++..-..+|..+.+|+.+.+..+ +......+|..+.+|+.+.+.++.++.+.. .+.++.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            345566677777777654 33233455666667777776543 443444566667777777777766666544 566667


Q ss_pred             CCCEEEccCCCCCCCC
Q 048561          307 KNGVLDVNRNCIHYLP  322 (382)
Q Consensus       307 ~L~~L~L~~N~l~~lp  322 (382)
                      +|+.+.|..+ ++.+.
T Consensus       311 ~L~~i~lp~~-l~~I~  325 (379)
T 4h09_A          311 KLSSVTLPTA-LKTIQ  325 (379)
T ss_dssp             TCCEEECCTT-CCEEC
T ss_pred             CCCEEEcCcc-ccEEH
Confidence            7777776533 55444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.90  E-value=9.6e-05  Score=69.58  Aligned_cols=96  Identities=9%  Similarity=0.114  Sum_probs=51.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.+.+.. .++. +-..+|.++.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++ .+........+|+.+.+
T Consensus        47 ~i~~v~ip~-~vt~-Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~L~~i~l  120 (379)
T 4h09_A           47 RISEVRVNS-GITS-IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTDLDDFEF  120 (379)
T ss_dssp             GCSEEEECT-TEEE-ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCCCSEEEC
T ss_pred             CCEEEEeCC-CccC-hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccCCcccccC
Confidence            455555543 2332 34556777888888887644 554555567666 5777666543 44 33332223346787777


Q ss_pred             cCCCCCCCCCcccc-cCCCCEEeCC
Q 048561          148 RFNFFTGSVPPQVF-MQTLDVLFLN  171 (382)
Q Consensus       148 s~n~l~~~~p~~~~-l~~L~~L~L~  171 (382)
                      ..+- + .+....+ ..+|+.+.+-
T Consensus       121 p~~~-~-~i~~~~F~~~~l~~~~~~  143 (379)
T 4h09_A          121 PGAT-T-EIGNYIFYNSSVKRIVIP  143 (379)
T ss_dssp             CTTC-C-EECTTTTTTCCCCEEEEC
T ss_pred             CCcc-c-cccccccccceeeeeecc
Confidence            6543 2 2333332 3345554443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=1.2e-05  Score=67.16  Aligned_cols=84  Identities=14%  Similarity=0.126  Sum_probs=44.6

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCc-CcccCCcccCCC----CCCCEEEeecCC-CCccCcccccCCC
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNK-FSGTISPKLAQL----PYLYELDISNNK-FSGTFPVAILGKN  140 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~  140 (382)
                      ..|+.||++++.++...+. .+.++++|+.|+|++|. ++..--..++.+    ++|++|+|++|. ++..--..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3567777776666553222 24566666666666663 443322334433    246666666653 5532223345566


Q ss_pred             CCcEEEecCCC
Q 048561          141 DLSFLDIRFNF  151 (382)
Q Consensus       141 ~L~~L~Ls~n~  151 (382)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=1.6e-05  Score=66.28  Aligned_cols=83  Identities=11%  Similarity=0.072  Sum_probs=57.6

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC-CCccCcccccCC----CCCcEEEecCCC-CCCCCCccc-ccCC
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK-FSGTFPVAILGK----NDLSFLDIRFNF-FTGSVPPQV-FMQT  164 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~~-~l~~  164 (382)
                      .+|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+ .+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            478899999988876555667888999999999885 664333345554    368999998875 552211112 2688


Q ss_pred             CCEEeCCCCc
Q 048561          165 LDVLFLNNNN  174 (382)
Q Consensus       165 L~~L~L~~n~  174 (382)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888774

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0026  Score=50.19  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=19.3

Q ss_pred             CCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC
Q 048561          117 YLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus       117 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  153 (382)
                      +|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555555333334445555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.0037  Score=49.22  Aligned_cols=57  Identities=30%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             ccccCCccCC-CCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561          239 VFDASNNRLT-GPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       239 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                      .++-+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4555666664 23444332  356777777777774444556666677777777776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.51  E-value=0.0006  Score=57.83  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             CCCCCCEEEcCCC-cCcc----cCCcccCCCCCCCEEEeecCCCCcc----CcccccCCCCCcEEEecCCCCC
Q 048561           90 QLPDLSLFHANSN-KFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus        90 ~l~~L~~L~l~~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  153 (382)
                      +-+.|+.|+|++| .|..    .+.+++..-..|+.|+|++|.|...    +...+..-+.|++|+|+.|.|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344555555543 3331    1223344444555555555555421    2222233345555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.41  E-value=0.00073  Score=57.28  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=42.4

Q ss_pred             CcCCCccccCCc-cCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCcccC-----
Q 048561          234 LREARVFDASNN-RLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFTGVG-----  299 (382)
Q Consensus       234 l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----  299 (382)
                      -+.|+.|+|++| .|...    +...+..-+.|+.|+|++|.|...    +...+.....|++|+|+.|.|....     
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345666666654 44421    223334445666666666666532    2233334456666666666665421     


Q ss_pred             CcccCCCCCCEEEccCC
Q 048561          300 PLCRKLIKNGVLDVNRN  316 (382)
Q Consensus       300 ~~~~~l~~L~~L~L~~N  316 (382)
                      ..+..-..|+.|+|++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            12444455666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 16/205 (7%)

Query: 113 AQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN 172
           A+L  L  L  +NN+ S   P+ I    +L  L +  N     +     +  L  L L N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN 250

Query: 173 NNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYEL 231
           N      P  L     L  L    N+ +   P  +  L++     L  N L        L
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 306

Query: 232 GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS 291
             L          N ++   P  +  L K++RL  + N +       L  L N+  LS  
Sbjct: 307 KNLTY---LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 292 NNYFTGVGPLCRKLIKNGVLDVNRN 316
           +N  + + PL   L +   L +N  
Sbjct: 360 HNQISDLTPLA-NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 50/276 (18%), Positives = 92/276 (33%), Gaps = 22/276 (7%)

Query: 88  IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGK-------- 139
           +DQ+  L           G     +  L  L +++ SNN+ +   P+  L K        
Sbjct: 43  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN 97

Query: 140 ---NDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANN 196
               D++ L    N    ++          +  L N N ++     +    AL    +  
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 197 KFTGSIPRSIGK-LSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSL 255
           + +     +  K L++         +         L  L       A+NN+++   P  +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 256 GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR 315
                ++ L+L+GN L       L +L NL +L L+NN  + + PL   L K   L +  
Sbjct: 218 LT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGA 272

Query: 316 NCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPC 351
           N I  +             L        S  + +  
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 33  ITSDPFNITSTWIGSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLP 92
           I++       T + +            P  NL  +   ++ FN     +P     +  L 
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLT 329

Query: 93  DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
            L      +NK S      LA L  +  L   +N+ S   P+A L +  ++ L +   
Sbjct: 330 KLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 33/303 (10%)

Query: 27  QTFKNTITSDPFNITSTWIGSDIC--KYKGFYCGHPPDNLTAIALASIDFNGFELAAP-T 83
              K  +  +P  ++S    +D C   + G  C     +     + ++D +G  L  P  
Sbjct: 12  LQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCD---TDTQTYRVNNLDLSGLNLPKPYP 67

Query: 84  LDGFIDQLPDLSLFH-ANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDL 142
           +   +  LP L+  +    N   G I P +A+L  L+ L I++   SG  P  +     L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 143 SFLDIRFNFFTGSVPPQVFMQTLDVLF-LNNNNFMQKLPQNLGSTPALY--LTFANNKFT 199
             LD  +N  +G++PP +      V    + N     +P + GS   L+  +T + N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 200 GSIPRSIGKLSSTLI---------------------EVLFLNNLLTGCLPYELGFLREAR 238
           G IP +   L+   +                     + + L          ++G  +   
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247

Query: 239 VFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298
             D  NNR+ G LP  L  L+ +  LN+S N L G++P+    L      + +NN     
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG 306

Query: 299 GPL 301
            PL
Sbjct: 307 SPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 51/248 (20%)

Query: 120 ELDISNNKFSGTFP----VAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNF 175
            LD+S       +P    +A L   +  ++    N      P    +  L  L++ + N 
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 176 MQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFL 234
              +P  L     L  L F+ N  +G++P SI  L + +      N +          F 
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 235 REARVFDASNNRLTGPLPCSLGCLEKIERL------------------------------ 264
           +       S NRLTG +P +   L                                    
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 265 ----------------NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN 308
                           +L  N +YG +P+ L  L  L +L++S N   G  P    L + 
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

Query: 309 GVLDVNRN 316
            V     N
Sbjct: 294 DVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 50/253 (19%), Positives = 77/253 (30%), Gaps = 11/253 (4%)

Query: 85  DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
           DG    L +L      +NK S       A L  L  L +S N+             +L  
Sbjct: 48  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV 107

Query: 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPR 204
            +        SV   +    +  L  N                 L      +    +IP+
Sbjct: 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 167

Query: 205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERL 264
               L  +L E+    N +T      L  L        S N ++     SL     +  L
Sbjct: 168 G---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224

Query: 265 NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-------LCRKLIKNGVLDVNRNC 317
           +L+ N L  +VP  L     +  + L NN  + +G           K      + +  N 
Sbjct: 225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

Query: 318 IHYLPDQRSTHEC 330
           + Y   Q ST  C
Sbjct: 284 VQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 7/184 (3%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNN 174
           P    LD+ NNK +           +L  L +  N  +   P     +  L+ L+L+ N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 175 FMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSS-TLIEVLFLNNLLTGCLPYELGF 233
             ++LP+ +  T    L    N+ T         L+   ++E+       +G        
Sbjct: 91  L-KELPEKMPKTLQ-ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 234 LREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293
           +++      ++  +T       G    +  L+L GN +       L  L+NL  L LS N
Sbjct: 149 MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 294 YFTG 297
             + 
Sbjct: 206 SISA 209

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 11/198 (5%)

Query: 158 PQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEV 216
           P+       +L L NN   +    +  +   L  L   NNK +   P +   L    +E 
Sbjct: 26  PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK--LER 83

Query: 217 LFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLY--GQ 274
           L+L+      LP ++      +      N +T         L ++  + L  N L   G 
Sbjct: 84  LYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 275 VPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQRSTHECALF 333
                  +  L  + +++   T +   L   L +   L ++ N I  +          L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLA 198

Query: 334 FLQPRFCFYPSWYNFIPC 351
            L   F    +  N    
Sbjct: 199 KLGLSFNSISAVDNGSLA 216

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 2/151 (1%)

Query: 232 GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS 291
               +  + D  NN++T         L+ +  L L  N +    P     L  L  L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 292 NNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPC 351
            N    +     K ++   L V+ N I  +          +  ++       S       
Sbjct: 88  KNQLKELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 352 SKVSPWSHPHSPSRTNSSSVAYNALVRNRSL 382
            +          + TN +++          L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTEL 176

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 34/216 (15%), Positives = 61/216 (28%), Gaps = 10/216 (4%)

Query: 84  LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143
             G    L  L   + + N+           L  L   +    K   +    +     + 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 144 FLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP 203
                             M+ L  + + + N          S   L+L    NK T    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL--DGNKITKVDA 188

Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
            S+  L + L ++    N ++      L      R    +NN+L    P  L   + I+ 
Sbjct: 189 ASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQV 246

Query: 264 LNLSGNLLYG------QVPEVLCALDNLVNLSLSNN 293
           + L  N +          P       +   +SL +N
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 82  PTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND 141
              +G    +  LS         + TI   L   P L EL +  NK +     ++ G N+
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 142 LSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPAL-YLTFANNKFTG 200
           L+ L + FN  +      +           NNN + K+P  L     +  +   NN  + 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS- 255

Query: 201 SIPRSIGKLSSTLIEVLFLNNL 222
           +I  +         +    + +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGV 277

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 3/180 (1%)

Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNF 175
                L +S N         ++    L+ L++        +     +  L  L L++N  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 176 MQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLR 235
                          L  + N+ T  +P    +    L E+    N L    P  L    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 236 EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF 295
           +      +NN LT      L  LE ++ L L  N LY  +P+       L    L  N +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 107 TISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLD 166
           T+   L QL  +  LD+S+N+     P   L       +    +    +V     +  L 
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDGVANLPRLQ 68

Query: 167 VLFLNNNNFMQ-KLPQNLGSTPAL-YLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224
            L L NN   Q    Q L S P L  L    N           +L+  L     ++++LT
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPS---VSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 238 RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297
           RV   ++  LT    C L  L  +  L+LS N L    P  L AL  L  L  S+N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 298 VGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHEC 330
           V  +         L +  N +      +    C
Sbjct: 58  VDGVANLPRL-QELLLCNNRLQQSAAIQPLVSC 89

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 40/229 (17%), Positives = 68/229 (29%), Gaps = 2/229 (0%)

Query: 92  PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF 151
                   + N+ S   +        L  L + +N  +     A  G   L  LD+  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 152 FTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKL 209
              SV P  F  +  L  L L+     +  P       AL   +  +    ++P    + 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN 269
              L  +    N ++         L          NR+    P +   L ++  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 270 LLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCI 318
            L     E L  L  L  L L++N +                  + + +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 86  GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
                L  L     + N+ +         L  L  L +  N  S     A+     L +L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTG 200
            +  N +      +     L     +++     LPQ L       L    N   G
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA--NDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 243 SNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302
             N  +  +         +E LN+S N L     E+      L  L  S N+   V  L 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLAEVPELP 323

Query: 303 RKLIKNGVLDVNRNCIHYLPD 323
           + L +   L V  N +   PD
Sbjct: 324 QNLKQ---LHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277
           +  N  +  +             + SNN+L   LP     LE   RL  S N L  +VPE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHL-AEVPE 321

Query: 278 VLCALDNLVNLSLSNNYFTGVGPLCRKL 305
           +     NL  L +  N       +   +
Sbjct: 322 LP---QNLKQLHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 97  FHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSV 156
                N  S  I       P L EL++SNNK     P        L  L   FN     V
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EV 319

Query: 157 PPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL 191
           P     Q L  L +  N   ++ P    S   L +
Sbjct: 320 PE--LPQNLKQLHVEYNPL-REFPDIPESVEDLRM 351

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 9/151 (5%)

Query: 220 NNLLTGCLPYELGFLREARVFDASNNRLTG----PLPCSLGCLEKIERLNLSGNLLYGQV 275
             L        L  L++ +V    +  LT      +  +L     +  LNL  N L    
Sbjct: 12  EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 71

Query: 276 PEVLCAL-----DNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHEC 330
              +          +  LSL N   TG G          +  +    +       +  + 
Sbjct: 72  VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 131

Query: 331 ALFFLQPRFCFYPSWYNFIPCSKVSPWSHPH 361
               L    C              +      
Sbjct: 132 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 14/215 (6%)

Query: 79  LAAPTLDGFIDQLPDLS-LFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAIL 137
           +  PT    I      +     N  K S T +    +L  + ++  +N+       +  L
Sbjct: 8   ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 67

Query: 138 GKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNK 197
              +++ L +  N  T        ++ L  L      F+ +      S+        +  
Sbjct: 68  --PNVTKLFLNGNKLTD-------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118

Query: 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC 257
              +    I  L                     L  L +       +N+++  +P  L  
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176

Query: 258 LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN 292
           L K++ L LS N +       L  L NL  L L +
Sbjct: 177 LTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 12/136 (8%)

Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYF 295
            DA        +   L   + ++ + LSGN +  +    + E + +  +L     S+ + 
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 296 TGVGP--------LCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYN 347
             V          L + L+K   L   R   +                           N
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 348 FIPCSKVSPWSHPHSP 363
            +     +  +     
Sbjct: 132 GLGPQAGAKIARALQE 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.24
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.27
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.03

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.4e-42  Score=318.31  Aligned_cols=295  Identities=25%  Similarity=0.419  Sum_probs=253.7

Q ss_pred             hHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCC--CcCceeeCCCCCCCcccceeEEEcCCCCCCCC-CCccccCCCCCC
Q 048561           19 LAAIYPIIQTFKNTITSDPFNITSTWI-GSDIC--KYKGFYCGHPPDNLTAIALASIDFNGFELAAP-TLDGFIDQLPDL   94 (382)
Q Consensus        19 ~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C--~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~-~~~~~~~~l~~L   94 (382)
                      .+.|++||++||+++. |+ ..+++|. ++|+|  .|+||+|+..+.   ..+|+.|+|+++++.+. .++..++++++|
T Consensus         4 ~~~e~~aLl~~k~~~~-~~-~~l~sW~~~~d~C~~~w~gv~C~~~~~---~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTDTQ---TYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CHHHHHHHHHHHHHTT-CC-GGGTTCCTTSCTTTTCSTTEEECCSSS---CCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CHHHHHHHHHHHHHCC-CC-CcCCCCCCCCCCCCCcCCCeEEeCCCC---cEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            4556779999999998 44 3588996 67899  599999986432   34799999999999884 256789999999


Q ss_pred             CEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561           95 SLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus        95 ~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      ++|+|++ |.++|.+|.+|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+. ++.|+++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccc
Confidence            9999997 899999999999999999999999999988888899999999999999999989988877 89999999999


Q ss_pred             CcCCCcCCcCCCC-Ccc-hhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561          173 NNFMQKLPQNLGS-TPA-LYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP  250 (382)
Q Consensus       173 n~l~~~~p~~~~~-~~L-~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  250 (382)
                      |.+.+.+|..+.. ..+ +.+++++|++++..+..+..+  ....+++.++...+..|..+..+++++.+++++|.+.+.
T Consensus       159 n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~  236 (313)
T d1ogqa_         159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988776 444 678999999998888888775  344678888888888888889999999999999999866


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCC-CCCC
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNC-IHYL  321 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~-l~~l  321 (382)
                      ++ .++.+++|+.|++++|+++|.+|.+++.+++|++|+|++|+|+|.+|.++.+++|+.+++++|+ +++.
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCC
Confidence            54 5778899999999999999999999999999999999999999877877888888888888876 4443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.6e-30  Score=238.55  Aligned_cols=251  Identities=26%  Similarity=0.333  Sum_probs=221.5

Q ss_pred             CCCCCEEEcCCCcCcc--cCCcccCCCCCCCEEEeec-CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCC
Q 048561           91 LPDLSLFHANSNKFSG--TISPKLAQLPYLYELDISN-NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLD  166 (382)
Q Consensus        91 l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~  166 (382)
                      ..+++.|+|+++.+.+  .+|..++++++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+..+. +.+|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3578999999999987  5889999999999999997 899999999999999999999999999977777665 88999


Q ss_pred             EEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCc
Q 048561          167 VLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNN  245 (382)
Q Consensus       167 ~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  245 (382)
                      ++++++|.+.+.+|..+.. ..++++++++|.+.+.+|..+..+...++.+++++|++++..+..+..+..+ .++++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            9999999999999998887 7899999999999999999998874445788899999999888888877655 6999999


Q ss_pred             cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC-CcccCCCCCCEEEccCCCCCC-CCC
Q 048561          246 RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG-PLCRKLIKNGVLDVNRNCIHY-LPD  323 (382)
Q Consensus       246 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~L~~N~l~~-lp~  323 (382)
                      .+.+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|+|++.. ..+.++++|++|+|++|+|++ +|+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999999999999997655 6888899999999999999754 478999999999999999994 786


Q ss_pred             c--ccccchhhhccCCCCCCCC
Q 048561          324 Q--RSTHECALFFLQPRFCFYP  343 (382)
Q Consensus       324 ~--~~~~~~~~~~~np~~c~~~  343 (382)
                      .  ...+....+.+|+.+|+.+
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTT
T ss_pred             cccCCCCCHHHhCCCccccCCC
Confidence            3  3456667788999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=6.8e-26  Score=207.83  Aligned_cols=261  Identities=22%  Similarity=0.253  Sum_probs=163.8

Q ss_pred             CCcCceeeCCCCCCC----cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDNL----TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~~----~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|+++.|+...-..    -...++.|++++|+++. +.+..|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC-cChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            789999997632110    02467788888888776 4455677888888888888888766677778888888888888


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcCCC--cCCcCCCC-CcchhhhccCccccc
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ--KLPQNLGS-TPALYLTFANNKFTG  200 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~--~~p~~~~~-~~L~~L~l~~n~l~~  200 (382)
                      |+++ .+|..+  ...++.|+++.|.+. .++...+  ...++.++...|....  ..+..+.. .+++++++.+|.+. 
T Consensus        89 n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-  163 (305)
T d1xkua_          89 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  163 (305)
T ss_dssp             SCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence            8877 555443  356778888888777 4443332  4566677776664432  22222322 45666667666665 


Q ss_pred             ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561          201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC  280 (382)
Q Consensus       201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~  280 (382)
                      .++..+   .++++.|++++|...+..+..+.+++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|.++.
T Consensus       164 ~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence            444332   245566666666666666666666666666666666666555556666666666666666666 4556666


Q ss_pred             CCCCCCEEEcccccCcccCC-------cccCCCCCCEEEccCCCCCC
Q 048561          281 ALDNLVNLSLSNNYFTGVGP-------LCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       281 ~l~~L~~L~L~~N~l~~~~~-------~~~~l~~L~~L~L~~N~l~~  320 (382)
                      .+++|++|+|++|+|+.+..       ......+|+.|+|++|.++.
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            66666666666666665432       12344556666666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.3e-24  Score=199.17  Aligned_cols=264  Identities=19%  Similarity=0.190  Sum_probs=210.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      ..+.+|=++++++. + |..+  .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~-l-P~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-V-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCS-C-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCc-c-CCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            34567777877876 3 3334  268999999999999555557999999999999999999777888999999999999


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc--cccchhHHHhhhhHHHHHhhccccC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT--GSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      ++|+++ .+|... ...++.|.+.+|.+.+..+..+.. .....+....|...  ...+..+..+ ++|+.+++++|.+.
T Consensus        87 ~~n~l~-~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC
T ss_pred             cCCccC-cCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccc-cccCccccccCCcc
Confidence            999998 677543 468999999999987655544444 44455666655432  2334455555 67888899999887


Q ss_pred             CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561          225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK  304 (382)
Q Consensus       225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  304 (382)
                      . ++..  .+++|+.|++++|.+++..+..+..++.++.|++++|.+.+..+.++..+++|++|+|++|+|+.++..+..
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~  240 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD  240 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence            4 4433  368999999999999988888999999999999999999988888999999999999999999998888999


Q ss_pred             CCCCCEEEccCCCCCCCCCcc----------cccchhhhccCCCCCC
Q 048561          305 LIKNGVLDVNRNCIHYLPDQR----------STHECALFFLQPRFCF  341 (382)
Q Consensus       305 l~~L~~L~L~~N~l~~lp~~~----------~~~~~~~~~~np~~c~  341 (382)
                      +++|+.|+|++|+|+.++...          ..+..+.+.+||+.+.
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            999999999999999987521          2334455667777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-24  Score=191.61  Aligned_cols=196  Identities=20%  Similarity=0.122  Sum_probs=122.0

Q ss_pred             eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561           69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR  148 (382)
Q Consensus        69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  148 (382)
                      ...++-++++++.  +|..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|+|+ .++ .+..+++|++|+|+
T Consensus        12 ~~~v~C~~~~L~~--iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          12 HLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             CCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred             CeEEEccCCCCCe--eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence            3445677777665  232221  46777777777777555556777777777777777776 444 24566777777777


Q ss_pred             CCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561          149 FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL  227 (382)
Q Consensus       149 ~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~  227 (382)
                      +|+++ .++..+. +++|+.|++++|.+.+.                                                .
T Consensus        86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~------------------------------------------------~  116 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL------------------------------------------------P  116 (266)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCC------------------------------------------------C
T ss_pred             ccccc-cccccccccccccccccccccccee------------------------------------------------e
Confidence            77776 3333333 66666666666654321                                                1


Q ss_pred             chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCC
Q 048561          228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIK  307 (382)
Q Consensus       228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~  307 (382)
                      +..+..+.++++|++++|.++...+..+..+++|+.+++++|++++..+..+..+++|++|+|++|+|+.+++.+..+++
T Consensus       117 ~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~  196 (266)
T d1p9ag_         117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL  196 (266)
T ss_dssp             SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCC
T ss_pred             ccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCC
Confidence            22334555666677777776655555566666777777777777655556666667777777777777766656666667


Q ss_pred             CCEEEccCCCCC
Q 048561          308 NGVLDVNRNCIH  319 (382)
Q Consensus       308 L~~L~L~~N~l~  319 (382)
                      |+.|+|++|.+.
T Consensus       197 L~~L~L~~Np~~  208 (266)
T d1p9ag_         197 LPFAFLHGNPWL  208 (266)
T ss_dssp             CSEEECCSCCBC
T ss_pred             CCEEEecCCCCC
Confidence            777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-24  Score=194.19  Aligned_cols=204  Identities=19%  Similarity=0.176  Sum_probs=107.8

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec-CCCCCCCCC-cccc-cCCCCEE
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR-FNFFTGSVP-PQVF-MQTLDVL  168 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p-~~~~-l~~L~~L  168 (382)
                      +.+++|+|++|+|+...+.+|.++++|++|++++|.+.+..+..+..+..+++++.. .+.++ .++ ..+. +++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCEE
Confidence            356677777777764444556677777777777777765555555666666666554 33444 333 3333 5667777


Q ss_pred             eCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccC
Q 048561          169 FLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL  247 (382)
Q Consensus       169 ~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  247 (382)
                      ++++|.+....+..+.. .+|+.+++++|.+++..+..+... .+|+.|++++|.+.+..+..|.++++|+++++++|.+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~-~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccc-cchhhcccccCcccccchhhhccccccchhhhhhccc
Confidence            77776665444444443 445555555555542212222222 2333444444444433444445555555555555555


Q ss_pred             CCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561          248 TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       248 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                      ++..|..|..+++|++|++++|.+.+..+.++..+++|++|++++|.+.+
T Consensus       190 ~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            54445555555555555555555554444455555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-23  Score=188.06  Aligned_cols=219  Identities=16%  Similarity=0.114  Sum_probs=173.8

Q ss_pred             EcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCC-CCcC
Q 048561           98 HANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLN-NNNF  175 (382)
Q Consensus        98 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~-~n~l  175 (382)
                      +.++.+++ .+|..+.  +++++|+|++|+|+...+..|.++++|++|++++|.+....+..+. ...++.+... .+.+
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            44455566 5666553  5789999999999955556799999999999999999844443333 6778888764 5566


Q ss_pred             CCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcC
Q 048561          176 MQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS  254 (382)
Q Consensus       176 ~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  254 (382)
                      ....+..+.. .+|++|++++|.+....+..+... .+|+.+++++|.+++..+..|..+++|+.|++++|.+++..+..
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchh-cccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            6666777776 789999999998874444444444 77888889999988777778888889999999999988777788


Q ss_pred             CCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC
Q 048561          255 LGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       255 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~  320 (382)
                      |.++++|+++++++|++++..|.+|..+++|++|++++|+++++++ .+..+++|++|++++|++..
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            8888999999999999988888888888999999999999988765 57788889999999988775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-21  Score=175.27  Aligned_cols=178  Identities=21%  Similarity=0.216  Sum_probs=140.0

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..++.|+|++|.+++ +.++.|.++++|++|++++|.++ .++ .++.+++|++|+|++|+++ ..+..+..+++|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCC-cCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            478999999999998 56678999999999999999998 454 4688999999999999998 5677899999999999


Q ss_pred             ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++|.+.+..+..+. +.++++|++++|.+....                                              
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~----------------------------------------------  140 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLP----------------------------------------------  140 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC----------------------------------------------
T ss_pred             ccccccceeeccccccccccccccccccccceec----------------------------------------------
Confidence            999999844333333 788888888888765321                                              


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG  297 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  297 (382)
                        +..+..+++++.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+..
T Consensus       141 --~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         141 --PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             --TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             --cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence              223445667777777777777666666777777888888888877 677777777778888888877654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=2.9e-22  Score=188.53  Aligned_cols=105  Identities=21%  Similarity=0.194  Sum_probs=72.3

Q ss_pred             hHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcc
Q 048561          212 TLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS  291 (382)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  291 (382)
                      +|+.++++++.+.+..  .+..+..++.++++.|.+++  ...+..+++++.|++++|++++. + .+..+++|++|+++
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECC
T ss_pred             cCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECC
Confidence            4444444444443221  23344444444444444442  12355678899999999999854 3 37788999999999


Q ss_pred             cccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561          292 NNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       292 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +|+|+++. .+..+++|++|++++|+|+++++
T Consensus       338 ~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         338 NNKVSDVS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             SSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCCCh-hHcCCCCCCEEECCCCcCCCChh
Confidence            99998754 68889999999999999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=5.9e-21  Score=179.45  Aligned_cols=238  Identities=20%  Similarity=0.254  Sum_probs=175.7

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      .+++.|+++++++..  +. .++.+++|++|++++|++++ ++ .++++++|++|++++|++.+ ++ .+..+++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~--l~-gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCC--cc-ccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccc-cc-cccccccccccc
Confidence            368999999999986  33 37889999999999999995 44 49999999999999999984 43 388999999999


Q ss_pred             ecCCCCCCCCCc---------------------------------------------------------------cc-cc
Q 048561          147 IRFNFFTGSVPP---------------------------------------------------------------QV-FM  162 (382)
Q Consensus       147 Ls~n~l~~~~p~---------------------------------------------------------------~~-~l  162 (382)
                      ++++.+++..+.                                                               .. .+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            999876631110                                                               01 13


Q ss_pred             CCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCcccc
Q 048561          163 QTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDA  242 (382)
Q Consensus       163 ~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  242 (382)
                      ++++.+++++|.+++..+. ....++++|++++|.++ .++ .+..+ ++|+.+++++|.+++..  .+..+++|+.|++
T Consensus       197 ~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~-~~~-~l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITPL-GILTNLDELSLNGNQLK-DIG-TLASL-TNLTDLDLANNQISNLA--PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCC-CCG-GGGGC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCcc-cccCCCCEEECCCCCCC-Ccc-hhhcc-cccchhccccCccCCCC--cccccccCCEeec
Confidence            5566666776666554332 22256677777777766 333 34444 66777777777776433  3667777777777


Q ss_pred             CCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561          243 SNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       243 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      ++|.+++. + .+..+..++.+++.+|.+.+ + ..+..+++++.|++++|+++++. .+..+++|+.|++++|+|++++
T Consensus       271 ~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         271 GANQISNI-S-PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             CSSCCCCC-G-GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             cCcccCCC-C-cccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh
Confidence            77777643 2 25566777788888887764 2 34677899999999999999875 4788999999999999999976

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.1e-18  Score=152.46  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=142.5

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      ..++++.+++.+.   ..++.+.+|+.|++.+|+++ .++ .+..+++|++|++++|.+++..+  +..+++|+++++++
T Consensus        22 ~~~~l~~~~~~d~---~~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCc---CCHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            4455666666652   12456778888888888887 343 57788888888888888874332  77888888888888


Q ss_pred             CCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCch
Q 048561          150 NFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPY  229 (382)
Q Consensus       150 n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~  229 (382)
                      |.++ .++....+++|+.+.++++...+..+ ......+..+.++++                         .+..  ..
T Consensus        95 n~~~-~i~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~-------------------------~~~~--~~  145 (227)
T d1h6ua2          95 NPLK-NVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-------------------------QITN--IS  145 (227)
T ss_dssp             CCCS-CCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-------------------------CCCC--CG
T ss_pred             cccc-ccccccccccccccccccccccccch-hccccchhhhhchhh-------------------------hhch--hh
Confidence            8877 56655557888888888776653221 111122333333333                         2221  12


Q ss_pred             hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCC
Q 048561          230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNG  309 (382)
Q Consensus       230 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~  309 (382)
                      .+...++|+.|++++|.+++.  ..++++++|+.|++++|++++ ++ .+..+++|++|+|++|+++++. .+..+++|+
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~  220 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLF  220 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred             hhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCc-ccccCCCCC
Confidence            356677889999999988743  237788999999999999984 44 3778899999999999998765 478899999


Q ss_pred             EEEccC
Q 048561          310 VLDVNR  315 (382)
Q Consensus       310 ~L~L~~  315 (382)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            999863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.2e-19  Score=154.90  Aligned_cols=222  Identities=13%  Similarity=0.040  Sum_probs=143.7

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc-ccccCCCCCcEEEec
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP-VAILGKNDLSFLDIR  148 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls  148 (382)
                      +.++.++.+++. ++.. +  .+++++|++++|.++...+.+|.++++|++|++++|.+...++ ..|..+++++++++.
T Consensus        11 ~~i~c~~~~l~~-iP~~-l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSS-CCSC-S--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCC-cCCC-C--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            356667777775 3332 2  2579999999999986555678999999999999999875544 467889999999886


Q ss_pred             C-CCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561          149 F-NFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT  224 (382)
Q Consensus       149 ~-n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~  224 (382)
                      . |.+....+..+. +++|+++++++|.+....+..+..  ..+..+...++.+.                         
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-------------------------  141 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-------------------------  141 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-------------------------
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccc-------------------------
Confidence            4 666644444444 899999999999886433322211  22222222222222                         


Q ss_pred             CCCchhcccC-cCCCccccCCccCCCCCCcCCCCCCCCCEE-eCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-c
Q 048561          225 GCLPYELGFL-REARVFDASNNRLTGPLPCSLGCLEKIERL-NLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-L  301 (382)
Q Consensus       225 ~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~  301 (382)
                      ...+..+..+ ..++.|++++|+++......+ ...+++++ .+++|+++...+..|..+++|++|+|++|+|+.+++ .
T Consensus       142 ~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             cccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence            2222334444 367788888888884433333 44555444 567788884444567888899999999998887765 3


Q ss_pred             ccCCCCCCEEEccCCCCCCCCC
Q 048561          302 CRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       302 ~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                      +.++++|+.+++  +.+..+|.
T Consensus       221 ~~~l~~L~~l~~--~~l~~lp~  240 (242)
T d1xwdc1         221 LENLKKLRARST--YNLKKLPT  240 (242)
T ss_dssp             CTTCCEEESSSE--ESSSCSCC
T ss_pred             HcCCcccccCcC--CCCCcCCC
Confidence            455555554444  44666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=5.1e-17  Score=150.02  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      +++.|||++++++.  +|.   ..++|++|++++|+|+ .+|..   +.+|+.|++++|+++ .++. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~--lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC--CCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC--CCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            47788999988876  343   2568899999999888 67754   357888899998887 4442 1  146889999


Q ss_pred             cCCCCCCCCCcccccCCCCEEeCCCCcCCC
Q 048561          148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQ  177 (382)
Q Consensus       148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~  177 (382)
                      ++|.+. .+|....+++|++|++++|.+..
T Consensus       106 ~~n~l~-~lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLE-KLPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCS-SCCCCTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-cccchhhhccceeeccccccccc
Confidence            999888 77765558889999998887754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.7e-17  Score=139.23  Aligned_cols=54  Identities=28%  Similarity=0.388  Sum_probs=25.1

Q ss_pred             CcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcc
Q 048561          234 LREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLS  291 (382)
Q Consensus       234 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  291 (382)
                      +++|+++++++|.+++ ++ .+..+++|++|++++|.|+ .++ .+..+++|++|+|+
T Consensus       155 l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         155 LTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            3445555555555542 22 1444555555555555554 233 24444455555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.8e-16  Score=136.42  Aligned_cols=165  Identities=22%  Similarity=0.283  Sum_probs=114.2

Q ss_pred             CCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeC
Q 048561           91 LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFL  170 (382)
Q Consensus        91 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L  170 (382)
                      +..|+.|++++|.++. ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|+++ .++....+++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-cccccccccccccccc
Confidence            4566777777777663 22 36667777777777777773 33 3567777777777777777 4554444677777777


Q ss_pred             CCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561          171 NNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP  250 (382)
Q Consensus       171 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  250 (382)
                      ++|.+..                                                  ...+.++++++.+++++|.+++ 
T Consensus       120 ~~~~~~~--------------------------------------------------~~~l~~l~~l~~l~~~~n~l~~-  148 (210)
T d1h6ta2         120 EHNGISD--------------------------------------------------INGLVHLPQLESLYLGNNKITD-  148 (210)
T ss_dssp             TTSCCCC--------------------------------------------------CGGGGGCTTCCEEECCSSCCCC-
T ss_pred             ccccccc--------------------------------------------------cccccccccccccccccccccc-
Confidence            7665321                                                  0124455667778888887763 


Q ss_pred             CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccC
Q 048561          251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR  315 (382)
Q Consensus       251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~  315 (382)
                       +..+..+++|+.+++++|++++ ++. +..+++|++|+|++|+|+.+ +.+..+++|++|+|++
T Consensus       149 -~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 -ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEE
T ss_pred             -cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCCC-hhhcCCCCCCEEEccC
Confidence             2345667888899999988874 433 77888899999999888865 4578888888888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.4e-16  Score=138.76  Aligned_cols=187  Identities=23%  Similarity=0.349  Sum_probs=145.3

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL  145 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  145 (382)
                      ..+++.|++.++++..  +. .+.++++|++|++++|.+++..  .+..+++|+++++++|.++ .++ .+.++++|+++
T Consensus        40 l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred             cCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccccccccccc
Confidence            3478999999999986  34 4889999999999999998543  3899999999999999998 444 58899999999


Q ss_pred             EecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561          146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG  225 (382)
Q Consensus       146 ~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~  225 (382)
                      +++++... .++.....+.++.+.++.+.+....+ .....++++|++.+|.+.                         .
T Consensus       113 ~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~-------------------------~  165 (227)
T d1h6ua2         113 DLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-------------------------D  165 (227)
T ss_dssp             ECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-------------------------C
T ss_pred             cccccccc-ccchhccccchhhhhchhhhhchhhh-hccccccccccccccccc-------------------------c
Confidence            99999987 44444557889999999888754322 122244555555554443                         2


Q ss_pred             CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEccc
Q 048561          226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN  292 (382)
Q Consensus       226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  292 (382)
                      .  ..+.++++|++|++++|++++ ++ .++.+++|++|++++|++++ ++. +..+++|+.|++++
T Consensus       166 ~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         166 L--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             c--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            1  236778899999999999984 44 37889999999999999984 443 78899999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=8.4e-17  Score=136.60  Aligned_cols=171  Identities=18%  Similarity=0.230  Sum_probs=82.5

Q ss_pred             CCcCceeeCCCCCCC----cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561           50 CKYKGFYCGHPPDNL----TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN  125 (382)
Q Consensus        50 C~w~gv~c~~~~~~~----~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  125 (382)
                      |.|..|.|+...-..    -..+++.|+|++|.|++.+....|+++++|+.|++++|.+....+..+..+++|++|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            566666675421000    0123444555555544322333444455555555555555444444444445555555555


Q ss_pred             CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccch
Q 048561          126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPR  204 (382)
Q Consensus       126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~  204 (382)
                      |+|++..+..|.++++|++|+|++|+|+                       +..+..|.. .+++++++++|.+......
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~-----------------------~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQIS-----------------------CVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC-----------------------EECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccccccCHHHHhCCCcccccccCCcccc-----------------------ccCHHHhcCCcccccccccccccccccch
Confidence            5554333344444555555555555544                       444444433 4444444544444422221


Q ss_pred             hHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCC
Q 048561          205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLT  248 (382)
Q Consensus       205 ~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  248 (382)
                      .+  +...++.+.+..+.+....|.   .+.+++.++++.|.+.
T Consensus       145 ~~--~~~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         145 AW--FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             HH--HHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCC
T ss_pred             HH--HhhhhhhhcccCCCeEeCCCh---hhcCCEeeecCHhhCc
Confidence            11  123466666766766655554   3455667777777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.1e-18  Score=148.43  Aligned_cols=213  Identities=17%  Similarity=0.132  Sum_probs=145.5

Q ss_pred             CCcCceeeCCCCCC-C---cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccC-CcccCCCCCCCEEEee
Q 048561           50 CKYKGFYCGHPPDN-L---TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTI-SPKLAQLPYLYELDIS  124 (382)
Q Consensus        50 C~w~gv~c~~~~~~-~---~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls  124 (382)
                      |..+.+.|....-. +   -...++.|++++|.+.. +....|.++++|++|++++|.+...+ +.+|..++.++++++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-cChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            67788888743211 0   12478999999999987 56667999999999999999987544 4568889999999987


Q ss_pred             c-CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc---cCCCCEEeCCCCcCCCcCCcCCCC--CcchhhhccCccc
Q 048561          125 N-NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF---MQTLDVLFLNNNNFMQKLPQNLGS--TPALYLTFANNKF  198 (382)
Q Consensus       125 ~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---l~~L~~L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l  198 (382)
                      . |.+....+..|.++++|++|++++|.+. ..+....   +..+..+...++.+....+..+..  ..++.+++.+|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            5 6787677778899999999999999998 5554443   455556666777766555555544  3455566666666


Q ss_pred             ccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCC-CccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCch
Q 048561          199 TGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREA-RVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE  277 (382)
Q Consensus       199 ~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  277 (382)
                      + .++..                        .+ ...++ +.+++++|.++...+..|.++++|++|++++|+|+...+.
T Consensus       166 ~-~i~~~------------------------~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         166 Q-EIHNC------------------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             C-EECTT------------------------TT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             c-ccccc------------------------cc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            5 23221                        22 22333 3345677777744445577788888888888888744344


Q ss_pred             hhcCCCCCCEEEc
Q 048561          278 VLCALDNLVNLSL  290 (382)
Q Consensus       278 ~~~~l~~L~~L~L  290 (382)
                      .+..+++|+.+++
T Consensus       220 ~~~~l~~L~~l~~  232 (242)
T d1xwdc1         220 GLENLKKLRARST  232 (242)
T ss_dssp             SCTTCCEEESSSE
T ss_pred             HHcCCcccccCcC
Confidence            4555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.3e-16  Score=136.17  Aligned_cols=177  Identities=20%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             EEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCC
Q 048561           72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF  151 (382)
Q Consensus        72 L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  151 (382)
                      ..++.+.+++. +  ....+.++++|++++|.++. + +.+..+++|++|++++|++++. +. +.++++|++|++++|.
T Consensus        23 ~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          23 TVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred             HHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccc
Confidence            34455555441 1  12346677777777777763 3 2466677777777777777743 32 6777777777777777


Q ss_pred             CCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhc
Q 048561          152 FTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYEL  231 (382)
Q Consensus       152 l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~  231 (382)
                      +. .++....++.|+.|++++|.+...                                                  ..+
T Consensus        96 ~~-~~~~l~~l~~L~~L~l~~~~~~~~--------------------------------------------------~~~  124 (199)
T d2omxa2          96 IA-DITPLANLTNLTGLTLFNNQITDI--------------------------------------------------DPL  124 (199)
T ss_dssp             CC-CCGGGTTCTTCSEEECCSSCCCCC--------------------------------------------------GGG
T ss_pred             cc-cccccccccccccccccccccccc--------------------------------------------------ccc
Confidence            76 555433466777777766654210                                                  113


Q ss_pred             ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEE
Q 048561          232 GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVL  311 (382)
Q Consensus       232 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L  311 (382)
                      ..+++|+.|++++|.+.. ++ .+..+++|+.|++.+|++++ ++ .+..+++|++|++++|+++++ +.+..+++|+.|
T Consensus       125 ~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i-~~l~~L~~L~~L  199 (199)
T d2omxa2         125 KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDI-SVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             chhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCC-ccccCCCCCCcC
Confidence            345566777777776652 32 45666777777777777763 33 356677777777777777654 345666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=4e-17  Score=138.61  Aligned_cols=173  Identities=16%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccC-cccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561           95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTF-PVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN  172 (382)
Q Consensus        95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~  172 (382)
                      ++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|++|++++|.+.+..+..+. +++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            35556666655 4554432  45566666666665322 33445555566666665555533333332 45555555555


Q ss_pred             CcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561          173 NNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP  252 (382)
Q Consensus       173 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  252 (382)
                      |++..                                                ..+..|.++++|++|+|++|.|++..+
T Consensus        88 N~l~~------------------------------------------------l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          88 NKIKE------------------------------------------------ISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCCE------------------------------------------------ECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             ccccc------------------------------------------------cCHHHHhCCCcccccccCCccccccCH
Confidence            54431                                                223455667777777777777776666


Q ss_pred             cCCCCCCCCCEEeCcCCcCcccCch-hhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561          253 CSLGCLEKIERLNLSGNLLYGQVPE-VLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       253 ~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .+|..+++|++|+|++|.+...... ++.  ..++.+.+..+.++...|  ..+..++.++|+.|.++..+
T Consensus       120 ~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p--~~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         120 GSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP--SKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS--TTTTTSBGGGSCTTTCCCCC
T ss_pred             HHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC--hhhcCCEeeecCHhhCcCCC
Confidence            6777777788888887777643221 111  224445556666665333  23445556666666665433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.4e-15  Score=129.66  Aligned_cols=160  Identities=23%  Similarity=0.360  Sum_probs=120.8

Q ss_pred             cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561           67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD  146 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  146 (382)
                      ..++.|+++++++..  +. .++.+++|++|++++|.+++. + .++++++|++|++++|.+. .++ .+.++++|++|+
T Consensus        40 ~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-cccccccccccc
Confidence            368999999999986  33 378899999999999999854 3 3899999999999999997 454 488999999999


Q ss_pred             ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561          147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC  226 (382)
Q Consensus       147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~  226 (382)
                      +++|.+. .++....+++|+.|++++|.+.. ++                                              
T Consensus       113 l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~-~~----------------------------------------------  144 (199)
T d2omxa2         113 LFNNQIT-DIDPLKNLTNLNRLELSSNTISD-IS----------------------------------------------  144 (199)
T ss_dssp             CCSSCCC-CCGGGTTCTTCSEEECCSSCCCC-CG----------------------------------------------
T ss_pred             ccccccc-cccccchhhhhHHhhhhhhhhcc-cc----------------------------------------------
Confidence            9999988 45544458899999998887642 11                                              


Q ss_pred             CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEE
Q 048561          227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL  288 (382)
Q Consensus       227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  288 (382)
                         .+..+++|+.|++.+|++++ ++ .++++++|++|++++|+++ .++ .+..+++|++|
T Consensus       145 ---~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         145 ---ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             ---GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             ---cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence               23445567777777777763 32 3667777777777777776 343 36667777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=4.6e-15  Score=136.61  Aligned_cols=96  Identities=22%  Similarity=0.205  Sum_probs=77.3

Q ss_pred             CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCC
Q 048561           92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLN  171 (382)
Q Consensus        92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~  171 (382)
                      .+++.|++++++++ .+|+.   .++|++|++++|+|+ .+|..+   .+|++|++++|+++ .++..  .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC--CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh--cccccccccc
Confidence            37899999999998 67853   578999999999999 778654   68999999999998 66542  3579999999


Q ss_pred             CCcCCCcCCcCCCCCcchhhhccCcccc
Q 048561          172 NNNFMQKLPQNLGSTPALYLTFANNKFT  199 (382)
Q Consensus       172 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~  199 (382)
                      +|.+. .+|.......|++++++++.+.
T Consensus       107 ~n~l~-~lp~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         107 NNQLE-KLPELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccchhhhccceeecccccccc
Confidence            99986 4555433378899999888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-17  Score=160.14  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=66.1

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcc----cCCcccCCCCCCCEEEeecCCCCcc----Cccccc-C
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAIL-G  138 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~-~  138 (382)
                      +|+.||++++++++..+...+..++++++|+|++|.++.    .+...+..+++|++|||++|.|+..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            577788888777764344455667777777777777662    2334456677777777777777521    122222 2


Q ss_pred             CCCCcEEEecCCCCCCCC----Ccccc-cCCCCEEeCCCCcC
Q 048561          139 KNDLSFLDIRFNFFTGSV----PPQVF-MQTLDVLFLNNNNF  175 (382)
Q Consensus       139 l~~L~~L~Ls~n~l~~~~----p~~~~-l~~L~~L~L~~n~l  175 (382)
                      ..+|++|+|++|+++...    +..+. +++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            246777777777776321    12222 56777777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-15  Score=137.22  Aligned_cols=206  Identities=15%  Similarity=0.064  Sum_probs=122.9

Q ss_pred             CCCCCCCEEEcCCCcCccc-CCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC-CCCCC-CCccc-ccCC
Q 048561           89 DQLPDLSLFHANSNKFSGT-ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN-FFTGS-VPPQV-FMQT  164 (382)
Q Consensus        89 ~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~~-~l~~  164 (382)
                      ....+|++|+++++.++.. +...+..+++|++|+|+++.+++..+..+..+++|++|+++++ .++.. +.... .+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3456788888888877633 3444677888888888888887666677778888888888885 44411 11111 2678


Q ss_pred             CCEEeCCCCc-CCCc-CCcCCC--CCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC-CchhcccCcCCCc
Q 048561          165 LDVLFLNNNN-FMQK-LPQNLG--STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC-LPYELGFLREARV  239 (382)
Q Consensus       165 L~~L~L~~n~-l~~~-~p~~~~--~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  239 (382)
                      |++|++++|. ++.. +...+.  ...++.|+++++..                       .++.. +...+.++++|++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----------------------~i~~~~l~~l~~~~~~L~~  179 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK-----------------------NLQKSDLSTLVRRCPNLVH  179 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG-----------------------GSCHHHHHHHHHHCTTCSE
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccc-----------------------ccccccccccccccccccc
Confidence            8888888763 2211 001111  12344444443211                       01100 1112345678888


Q ss_pred             cccCCc-cCCCCCCcCCCCCCCCCEEeCcCC-cCcccCchhhcCCCCCCEEEcccccCccc-CCc-ccCCCCCCEEEccC
Q 048561          240 FDASNN-RLTGPLPCSLGCLEKIERLNLSGN-LLYGQVPEVLCALDNLVNLSLSNNYFTGV-GPL-CRKLIKNGVLDVNR  315 (382)
Q Consensus       240 L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~-~~~l~~L~~L~L~~  315 (382)
                      |++++| .+++.....+..+++|++|+++++ .+++.....+..+++|+.|+++++ ++.. ... ...+++|   ++..
T Consensus       180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~  255 (284)
T d2astb2         180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINC  255 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESC
T ss_pred             cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccC
Confidence            888875 466556666777888888888884 566555566777788888888877 3321 111 2344444   4566


Q ss_pred             CCCCCC
Q 048561          316 NCIHYL  321 (382)
Q Consensus       316 N~l~~l  321 (382)
                      +.++.+
T Consensus       256 ~~ls~~  261 (284)
T d2astb2         256 SHFTTI  261 (284)
T ss_dssp             CCSCCT
T ss_pred             ccCCCC
Confidence            777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.7e-13  Score=107.17  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561           70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF  149 (382)
Q Consensus        70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  149 (382)
                      +.|++++|+++.  ++ .++++++|++|++++|.++ .+|+.++.+++|++|++++|.|+ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            468999999986  33 3788999999999999998 67878899999999999999998 455 488899999999999


Q ss_pred             CCCCCCCCc--ccc-cCCCCEEeCCCCcCCC
Q 048561          150 NFFTGSVPP--QVF-MQTLDVLFLNNNNFMQ  177 (382)
Q Consensus       150 n~l~~~~p~--~~~-l~~L~~L~L~~n~l~~  177 (382)
                      |+++ .++.  .+. +++|++|++++|.++.
T Consensus        75 N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCC-SSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccC-CCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9998 4443  233 7889999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.8e-15  Score=139.98  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             hhHHHHHhhccccCCC-----CchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCcccCch----
Q 048561          211 STLIEVLFLNNLLTGC-----LPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQVPE----  277 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~----  277 (382)
                      ..++.|++++|.+...     +...+...++|+.|++++|.++..    +...+..+++|++|++++|.|++....    
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            3455556666655421     223466788999999999988632    334566788999999999999754222    


Q ss_pred             hhc--CCCCCCEEEcccccCcccC-----Ccc-cCCCCCCEEEccCCCCCCCC
Q 048561          278 VLC--ALDNLVNLSLSNNYFTGVG-----PLC-RKLIKNGVLDVNRNCIHYLP  322 (382)
Q Consensus       278 ~~~--~l~~L~~L~L~~N~l~~~~-----~~~-~~l~~L~~L~L~~N~l~~lp  322 (382)
                      .+.  ....|++|++++|+|+...     ..+ .+.++|+.|+|++|.+..-.
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            332  2467999999999987531     123 35778999999999997644

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.1e-13  Score=106.69  Aligned_cols=101  Identities=25%  Similarity=0.337  Sum_probs=85.0

Q ss_pred             CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCc
Q 048561           95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNN  174 (382)
Q Consensus        95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~  174 (382)
                      |+|++++|+++ .++ .++.+++|++|++++|+++ .+|..+..+++|++|++++|.++ .++....+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCc
Confidence            68999999998 555 4899999999999999998 78888999999999999999999 67765559999999999999


Q ss_pred             CCCcCC-cCCCC-CcchhhhccCcccc
Q 048561          175 FMQKLP-QNLGS-TPALYLTFANNKFT  199 (382)
Q Consensus       175 l~~~~p-~~~~~-~~L~~L~l~~n~l~  199 (382)
                      +..... ..+.. .+++++++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            975432 33444 67888888888876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.7e-13  Score=111.20  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=37.0

Q ss_pred             ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561           68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI  147 (382)
Q Consensus        68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  147 (382)
                      .++.|+|++|+++.  ++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|++|++
T Consensus        19 ~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCCc--cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            34455555555544  2233344445555555555544 222 2444455555555555554222222334455555555


Q ss_pred             cCCCCC
Q 048561          148 RFNFFT  153 (382)
Q Consensus       148 s~n~l~  153 (382)
                      ++|+++
T Consensus        95 ~~N~i~  100 (162)
T d1a9na_          95 TNNSLV  100 (162)
T ss_dssp             CSCCCC
T ss_pred             cccccc
Confidence            555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.7e-14  Score=127.55  Aligned_cols=206  Identities=19%  Similarity=0.240  Sum_probs=141.9

Q ss_pred             ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC-CCCcc-CcccccCCCCCc
Q 048561           66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN-KFSGT-FPVAILGKNDLS  143 (382)
Q Consensus        66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~  143 (382)
                      ...++.||++++.+.+..+...+..+++|++|+++++.+.+..+..++.+++|++|+++++ .++.. +......+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4579999999998876445666889999999999999998877888999999999999995 56522 222345689999


Q ss_pred             EEEecCCC-CCCC-CCcccc--cCCCCEEeCCCCc--CCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHH
Q 048561          144 FLDIRFNF-FTGS-VPPQVF--MQTLDVLFLNNNN--FMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVL  217 (382)
Q Consensus       144 ~L~Ls~n~-l~~~-~p~~~~--l~~L~~L~L~~n~--l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~  217 (382)
                      +|+++++. ++.. +...+.  .+.|+.|+++++.  ++..                      .+..-.... ++|++|+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~----------------------~l~~l~~~~-~~L~~L~  181 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----------------------DLSTLVRRC-PNLVHLD  181 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----------------------HHHHHHHHC-TTCSEEE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccc----------------------ccccccccc-ccccccc
Confidence            99999964 4321 112222  4789999998753  2210                      111111222 5566777


Q ss_pred             hhcc-ccCCCCchhcccCcCCCccccCCc-cCCCCCCcCCCCCCCCCEEeCcCCcCcc-cCchhhcCCCCCCEEEccccc
Q 048561          218 FLNN-LLTGCLPYELGFLREARVFDASNN-RLTGPLPCSLGCLEKIERLNLSGNLLYG-QVPEVLCALDNLVNLSLSNNY  294 (382)
Q Consensus       218 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~  294 (382)
                      +++| .+++.....+..+++|++|++++| .+++.....++.+++|++|+++++ +.. .+......+++|   .++.++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L---~i~~~~  257 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHL---QINCSH  257 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTS---EESCCC
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccc---cccCcc
Confidence            7664 355555667788899999999985 577655566778899999999988 332 222223345554   456677


Q ss_pred             Cccc
Q 048561          295 FTGV  298 (382)
Q Consensus       295 l~~~  298 (382)
                      ++.+
T Consensus       258 ls~~  261 (284)
T d2astb2         258 FTTI  261 (284)
T ss_dssp             SCCT
T ss_pred             CCCC
Confidence            7764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-12  Score=106.66  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCC
Q 048561           88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTL  165 (382)
Q Consensus        88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L  165 (382)
                      +.+...+++|+|++|+|+ .++..+..+++|+.|+|++|.|+ .++ .+..+++|++|++++|+++ .++..+ . +++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCcccccccccc
Confidence            567889999999999999 56766788999999999999998 554 5889999999999999999 565544 3 8999


Q ss_pred             CEEeCCCCcCCCcCC-cCCCC-CcchhhhccCcccccccc
Q 048561          166 DVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNKFTGSIP  203 (382)
Q Consensus       166 ~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~l~~~lp  203 (382)
                      ++|++++|.+..... ..+.. .+|+++++++|.++ ..+
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~  128 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKK  128 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GST
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc-ccc
Confidence            999999999875322 23444 78999999999987 444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=7.2e-15  Score=135.84  Aligned_cols=232  Identities=15%  Similarity=0.105  Sum_probs=158.4

Q ss_pred             cceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcc---c-------CCcccCCCCCCCEEEeecCCCCcc--
Q 048561           67 IALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSG---T-------ISPKLAQLPYLYELDISNNKFSGT--  131 (382)
Q Consensus        67 ~~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~---~-------~p~~l~~l~~L~~L~Ls~n~l~~~--  131 (382)
                      ..++.|+|++|.+...   .+...+...++|+.++++++....   .       +...+..+++|++|+|++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            3688999999987542   123346778899999998775431   1       223456788999999999998753  


Q ss_pred             --CcccccCCCCCcEEEecCCCCCCCCCcc--------------cccCCCCEEeCCCCcCCCcCCcCC----C-CCcchh
Q 048561          132 --FPVAILGKNDLSFLDIRFNFFTGSVPPQ--------------VFMQTLDVLFLNNNNFMQKLPQNL----G-STPALY  190 (382)
Q Consensus       132 --~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------------~~l~~L~~L~L~~n~l~~~~p~~~----~-~~~L~~  190 (382)
                        +...+...++|++|++++|.+.......              ...+.|+.+.+++|.+.......+    . ...+++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              3334556789999999999875211100              014679999999988754322222    1 257889


Q ss_pred             hhccCcccccc-----cchhHHHhhhhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCCC----cCCC-
Q 048561          191 LTFANNKFTGS-----IPRSIGKLSSTLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPLP----CSLG-  256 (382)
Q Consensus       191 L~l~~n~l~~~-----lp~~l~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~-  256 (382)
                      |++++|.+...     +...+... +.|+.|++++|.++..    +...+..+++|++|++++|.|++...    ..+. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             cccccccccccccccchhhhhcch-hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            99999987632     11223333 6788899999987532    34556788999999999999874321    1222 


Q ss_pred             -CCCCCCEEeCcCCcCccc----Cchhhc-CCCCCCEEEcccccCcccC
Q 048561          257 -CLEKIERLNLSGNLLYGQ----VPEVLC-ALDNLVNLSLSNNYFTGVG  299 (382)
Q Consensus       257 -~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~~  299 (382)
                       ....|++|++++|.|...    +...+. ..+.|+.|+|++|.+....
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence             246799999999998743    233332 5688999999999997643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-15  Score=139.38  Aligned_cols=134  Identities=16%  Similarity=-0.017  Sum_probs=80.7

Q ss_pred             CcchhhhccCcccccccchh----HHHhhhhHHHHHhhccccCCCCchhc-----ccCcCCCccccCCccCCCCCCc---
Q 048561          186 TPALYLTFANNKFTGSIPRS----IGKLSSTLIEVLFLNNLLTGCLPYEL-----GFLREARVFDASNNRLTGPLPC---  253 (382)
Q Consensus       186 ~~L~~L~l~~n~l~~~lp~~----l~~l~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~---  253 (382)
                      ..++.+++++|.+.......    +... ..+..+++++|.+.......+     .....|+.+++++|.++.....   
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            35777888888776332211    1221 344555666666542211111     2345788888888877643222   


Q ss_pred             -CCCCCCCCCEEeCcCCcCccc----Cchhhc-CCCCCCEEEcccccCccc-----CCcccCCCCCCEEEccCCCCCC
Q 048561          254 -SLGCLEKIERLNLSGNLLYGQ----VPEVLC-ALDNLVNLSLSNNYFTGV-----GPLCRKLIKNGVLDVNRNCIHY  320 (382)
Q Consensus       254 -~~~~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~~  320 (382)
                       .+....+|++|+|++|.|.+.    +...+. ..+.|++|+|++|+|+..     ...+..+++|++|+|++|.|+.
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence             223456788888888888643    233333 356788888888888752     1235567888888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-11  Score=98.94  Aligned_cols=91  Identities=20%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             ccccCCCCCCCEEEcCCC-cCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-c
Q 048561           85 DGFIDQLPDLSLFHANSN-KFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-M  162 (382)
Q Consensus        85 ~~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l  162 (382)
                      +..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+...+..|..+++|++|+|++|+++ .+|...+ .
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQG  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCS
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcc
Confidence            344778899999999866 588666678999999999999999999666778999999999999999999 7776655 5


Q ss_pred             CCCCEEeCCCCcCC
Q 048561          163 QTLDVLFLNNNNFM  176 (382)
Q Consensus       163 ~~L~~L~L~~n~l~  176 (382)
                      ..|++|+|++|.+.
T Consensus       103 ~~l~~L~L~~Np~~  116 (156)
T d2ifga3         103 LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             ccccccccCCCccc
Confidence            67999999999764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-11  Score=100.40  Aligned_cols=92  Identities=17%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             chhcccCcCCCccccCCc-cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561          228 PYELGFLREARVFDASNN-RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI  306 (382)
Q Consensus       228 ~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~  306 (382)
                      |..+..+++|++|++++| .++...+.+|.++++|+.|++++|+|+...+.+|..+++|++|+|++|+|+.+++......
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc
Confidence            445556667777777654 3664445566677777777777777776556667777777777777777776665444444


Q ss_pred             CCCEEEccCCCCC
Q 048561          307 KNGVLDVNRNCIH  319 (382)
Q Consensus       307 ~L~~L~L~~N~l~  319 (382)
                      .|+.|+|++|.+.
T Consensus       104 ~l~~L~L~~Np~~  116 (156)
T d2ifga3         104 SLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCC
T ss_pred             cccccccCCCccc
Confidence            6777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=8.2e-14  Score=118.34  Aligned_cols=66  Identities=20%  Similarity=0.330  Sum_probs=39.9

Q ss_pred             CCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCC
Q 048561          108 ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFM  176 (382)
Q Consensus       108 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~  176 (382)
                      ++.++..+++|++|+|++|+|+ .++ .+..+++|++|+|++|.++ .++.... +++|+.|++++|.++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            3445666666777777777666 343 3666667777777777666 5554333 455666666666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=9.2e-14  Score=118.01  Aligned_cols=58  Identities=12%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             CCCEEEeecC--CCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCC
Q 048561          117 YLYELDISNN--KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFM  176 (382)
Q Consensus       117 ~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~  176 (382)
                      .++.+++.+.  .+. .++..+..+++|++|+|++|.|+ .++....+++|++|++++|.++
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~l~~l~~L~~L~Ls~N~i~   83 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCCHHHHTTCCEEECCEEEEC
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-CcccccCCccccChhhcccccc
Confidence            3455666553  343 56677888999999999999998 6665444889999999988765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.5e-07  Score=73.88  Aligned_cols=82  Identities=24%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             cccCcCCCccccCCccCCCCC--CcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC--------
Q 048561          231 LGFLREARVFDASNNRLTGPL--PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP--------  300 (382)
Q Consensus       231 ~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--------  300 (382)
                      +..+++|++|+|++|+|+...  +..+..+++|+.|++++|.|+...+........|+.|++++|.++....        
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            346788999999999988432  2345567889999999999884433344445678999999998876432        


Q ss_pred             cccCCCCCCEEE
Q 048561          301 LCRKLIKNGVLD  312 (382)
Q Consensus       301 ~~~~l~~L~~L~  312 (382)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            246788888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.8e-07  Score=75.64  Aligned_cols=79  Identities=20%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             hhHHHHHhhccccCCCC--chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc-------hhhcC
Q 048561          211 STLIEVLFLNNLLTGCL--PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP-------EVLCA  281 (382)
Q Consensus       211 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-------~~~~~  281 (382)
                      +.|++|++++|+++...  +..+..+++|+.|++++|.|+....-.+.....|+.|++++|.+.....       ..+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            78999999999988643  3557789999999999999995333233344579999999999985443       23567


Q ss_pred             CCCCCEEE
Q 048561          282 LDNLVNLS  289 (382)
Q Consensus       282 l~~L~~L~  289 (382)
                      +++|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            89999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.29  E-value=2.5e-05  Score=62.86  Aligned_cols=91  Identities=13%  Similarity=0.076  Sum_probs=53.7

Q ss_pred             cCcCCCccccCCc-cCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCcccC----
Q 048561          233 FLREARVFDASNN-RLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFTGVG----  299 (382)
Q Consensus       233 ~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----  299 (382)
                      +.++|+.|+|+++ .++..    +...+...++|++|++++|.+...    +...+...+.|++|+|++|.|+...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456777777653 34421    222344556777777777776532    2233445567777777777776521    


Q ss_pred             -CcccCCCCCCEEEccCCCCCCCCC
Q 048561          300 -PLCRKLIKNGVLDVNRNCIHYLPD  323 (382)
Q Consensus       300 -~~~~~l~~L~~L~L~~N~l~~lp~  323 (382)
                       ..+...+.|++|++++|.+..+.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccH
Confidence             135566677777777777666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.24  E-value=0.0001  Score=59.11  Aligned_cols=86  Identities=12%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             ceeEEEcCCCC-CCCCC---CccccCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCcc----Cccc
Q 048561           68 ALASIDFNGFE-LAAPT---LDGFIDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGT----FPVA  135 (382)
Q Consensus        68 ~l~~L~L~~~~-l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~  135 (382)
                      ++++|+|++++ +....   +...+...+.|++|++++|.+...    +...+...+.|++|+|++|.++..    +-..
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            57777777643 43311   122345566777777777776532    223344456777777777777632    2234


Q ss_pred             ccCCCCCcEEEecCCCCC
Q 048561          136 ILGKNDLSFLDIRFNFFT  153 (382)
Q Consensus       136 l~~l~~L~~L~Ls~n~l~  153 (382)
                      +...+.|++|++++|.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTTCCCSEEECCCCSSC
T ss_pred             HHhCCcCCEEECCCCcCC
Confidence            555667777777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.27  E-value=0.00029  Score=56.11  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             ceeEEEcCCC-CCCCCC---CccccCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCcc----Cccc
Q 048561           68 ALASIDFNGF-ELAAPT---LDGFIDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGT----FPVA  135 (382)
Q Consensus        68 ~l~~L~L~~~-~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~  135 (382)
                      .++.|+++++ .++...   +..++...++|+.|++++|.+...    +...+...+.++.+++++|.++..    +...
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            4555666552 333211   122234455566666666555422    122233445556666655555421    2233


Q ss_pred             ccCCCCCcEEEe
Q 048561          136 ILGKNDLSFLDI  147 (382)
Q Consensus       136 l~~l~~L~~L~L  147 (382)
                      +...++|+.++|
T Consensus        98 l~~~~~L~~l~L  109 (166)
T d1io0a_          98 LQSNTSLIELRI  109 (166)
T ss_dssp             GGGCSSCCEEEC
T ss_pred             HHhCccccEEee
Confidence            444455554444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.03  E-value=0.00024  Score=56.69  Aligned_cols=111  Identities=16%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             ccCCCCCCCEEEcCC-CcCcc----cCCcccCCCCCCCEEEeecCCCCcc----CcccccCCCCCcEEEecCCCCCCCCC
Q 048561           87 FIDQLPDLSLFHANS-NKFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAILGKNDLSFLDIRFNFFTGSVP  157 (382)
Q Consensus        87 ~~~~l~~L~~L~l~~-n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p  157 (382)
                      ...+.+.|++|++++ +.++.    .+-.++...++|++|+|++|.++..    +...+...+.++.+++++|.+....-
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678999999997 45652    2344567789999999999998743    23345567889999999998863322


Q ss_pred             cc----cc-cCCCCEEeC--CCCcCCCcCCcCC----C-CCcchhhhccCcc
Q 048561          158 PQ----VF-MQTLDVLFL--NNNNFMQKLPQNL----G-STPALYLTFANNK  197 (382)
Q Consensus       158 ~~----~~-l~~L~~L~L--~~n~l~~~~p~~~----~-~~~L~~L~l~~n~  197 (382)
                      ..    +. .++|+.++|  ++|.+....-..+    . ..++++|+++.+.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            11    11 467887655  4555543221122    1 2567777776654