Citrus Sinensis ID: 048574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MGTIKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccccHHHHHHHccccccccccccEEEEEcccccEEEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccHHHHHHHccccccccccccEEEEccccccEEEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mgtikinritspfasadsepsaydvlqeydfpvgilpkgvtRYALNAETGELIFGTYEQQLQLHH
Flexible Loop (DISEMBL)
mgtikinritspfasadsepSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Low Complexity Region (SEG)
MGTIKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Disordered region (IsUnstruct)
*********************AYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYE*******
Disordered Region (DISOPRED)
**TIK***IT**********SAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQL****
Disordered Region (DISEMBL)
MGTIKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Disordered Region (DISPRO)
**TIKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTIKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYEQQLQLHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
296089725	269	unnamed protein product [Vitis vinifera]	0.676	0.163	0.522	4e-07
225450709	169	PREDICTED: uncharacterized protein LOC10	0.646	0.248	0.547	2e-06
255564212	161	conserved hypothetical protein [Ricinus	0.630	0.254	0.536	2e-06
225450691	170	PREDICTED: uncharacterized protein LOC10	0.661	0.252	0.511	3e-06
225450706	166	PREDICTED: uncharacterized protein At5g0	0.569	0.222	0.621	8e-06
125552016	183	hypothetical protein OsI_19648 [Oryza sa	0.523	0.185	0.676	9e-06
115463431	182	Os05g0362500 [Oryza sativa Japonica Grou	0.523	0.186	0.676	9e-06
147776440	261	hypothetical protein VITISV_002758 [Viti	0.569	0.141	0.621	1e-05
225450695	158	PREDICTED: uncharacterized protein At5g0	0.661	0.272	0.511	1e-05
222631296	192	hypothetical protein OsJ_18240 [Oryza sa	0.523	0.177	0.676	1e-05

>gi|296089725|emb|CBI39544.3| unnamed protein product [Vitis vinifera]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 34/44 (77%)

Query: 10  TSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELI 53
           + P  SA+  P+AY+VLQ+Y+FPVG+LP+GV  Y LN+ TG+ +
Sbjct: 129 SPPVTSANENPTAYEVLQDYNFPVGLLPEGVLGYELNSTTGKFV 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450709|ref|XP_002283330.1| PREDICTED: uncharacterized protein LOC100247685 [Vitis vinifera] gi|147776442|emb|CAN74023.1| hypothetical protein VITISV_002760 [Vitis vinifera]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 12 PFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELI 53
          P  SA+  P+AY+VLQ+Y+FPVG+LP+GV  Y LN+ TG+ +
Sbjct: 26 PVTSANENPTAYEVLQDYNFPVGLLPEGVLGYELNSTTGKFV 67

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564212|ref|XP_002523103.1| conserved hypothetical protein [Ricinus communis] gi|223537665|gb|EEF39288.1| conserved hypothetical protein [Ricinus communis]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 12 PFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          P  +A++  + Y+VLQ+YDFP+G+LPKGVT Y LN  TG+ 
Sbjct: 17 PIFAANTNSTVYEVLQDYDFPIGLLPKGVTSYELNTSTGKF 57

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450691|ref|XP_002283241.1| PREDICTED: uncharacterized protein LOC100263080 [Vitis vinifera] gi|296089728|emb|CBI39547.3| unnamed protein product [Vitis vinifera]

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 10 TSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          ++P +S++  P+ Y+VLQ+Y+FPVG+LPKGV  Y LN  TG+ 
Sbjct: 23 STPASSSNDSPTVYEVLQDYNFPVGLLPKGVIGYDLNTSTGKF 65

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450706|ref|XP_002283314.1| PREDICTED: uncharacterized protein At5g01610-like [Vitis vinifera]

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 16 ADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
           +S P+AY+VL+ YDFPVG+LPKGV  Y LNA TG+ 
Sbjct: 26 GNSSPTAYEVLEGYDFPVGLLPKGVRSYDLNATTGQF 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125552016|gb|EAY97725.1| hypothetical protein OsI_19648 [Oryza sativa Indica Group]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 19 EPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          +P+AY+VL+ YDFPVGILPKGVT Y L A TG+ 
Sbjct: 27 KPTAYEVLESYDFPVGILPKGVTSYTLEATTGDF 60

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115463431|ref|NP_001055315.1| Os05g0362500 [Oryza sativa Japonica Group] gi|54287657|gb|AAV31401.1| unknown protein [Oryza sativa Japonica Group] gi|113578866|dbj|BAF17229.1| Os05g0362500 [Oryza sativa Japonica Group] gi|215706967|dbj|BAG93427.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 19 EPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          +P+AY+VL+ YDFPVGILPKGVT Y L A TG+ 
Sbjct: 26 KPTAYEVLESYDFPVGILPKGVTSYTLEATTGDF 59

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776440|emb|CAN74021.1| hypothetical protein VITISV_002758 [Vitis vinifera]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 16 ADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
           +S P+AY+VL+ YDFPVG+LPKGV  Y LNA TG+ 
Sbjct: 26 GNSSPTAYEVLEGYDFPVGLLPKGVRSYDLNATTGQF 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450695|ref|XP_002283277.1| PREDICTED: uncharacterized protein At5g01610 [Vitis vinifera] gi|147780197|emb|CAN68006.1| hypothetical protein VITISV_026357 [Vitis vinifera]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 34/43 (79%)

Query: 10 TSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          ++P  S ++ P+AY+VL+EY+FP+G+LPKG+  Y LN+ TGE 
Sbjct: 24 STPANSYNNSPNAYEVLREYNFPMGLLPKGMKGYDLNSSTGEF 66

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222631296|gb|EEE63428.1| hypothetical protein OsJ_18240 [Oryza sativa Japonica Group]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%)

Query: 19 EPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          +P+AY+VL+ YDFPVGILPKGVT Y L A TG+ 
Sbjct: 26 KPTAYEVLESYDFPVGILPKGVTSYTLEATTGDF 59

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.661	0.259	0.543	2.3e-07
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.569	0.221	0.578	6.1e-07
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.630	0.266	0.512	2.1e-06
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.723	0.241	0.404	3.3e-05
TAIR|locus:505006095	149	AT1G02813 [Arabidopsis thalian	0.630	0.275	0.487	0.00013

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query:     9 ITSPFASA---DSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGE 51
             I SP  +A   D  P+AY +LQ Y+FPVGILPKGV  Y L+  TG+
Sbjct:    16 IPSPLIAAANDDDIPTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQ 61

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query:    15 SADSE-PSAYDVLQEYDFPVGILPKGVTRYALNAETGE 51
             +A+S+ P+AY +LQ Y+FPVGILPKGV  Y L+  TG+
Sbjct:    24 AAESDTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGK 61

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query:    10 TSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETG 50
             T  FA +  +P+AYD ++ Y+ P GILPKGV  Y LN +TG
Sbjct:    17 TVSFAVSGQKPTAYDAVKLYNLPPGILPKGVVDYELNPKTG 57

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query:     4 IKINRITSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETG 50
             +  + I  P  S+  +PS YD L+E + P GI+PKGVT ++++ +TG
Sbjct:    13 VLFSSILFPQLSSLPDPSFYDYLRESNLPAGIVPKGVTNFSIDIKTG 59

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006095 AT1G02813 [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 20/41 (48%), Positives = 23/41 (56%)

Query:    10 TSPFASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETG 50
             TS   S   + S Y VL+ Y  P GILP+GV  Y LN  TG
Sbjct:    13 TSVSVSGQKKRSVYQVLENYTLPRGILPEGVHDYDLNRRTG 53


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.136   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.45    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  445 (47 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.70u 0.13s 7.83t   Elapsed:  00:00:01
  Total cpu time:  7.70u 0.13s 7.83t   Elapsed:  00:00:01
  Start:  Sat May 11 08:06:08 2013   End:  Sat May 11 08:06:09 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010584 "pollen exine formation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	65
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	5e-13

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score = 58.0 bits (141), Expect = 5e-13
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 21 SAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          +AY++L+EY  PVG+LPKGVT Y L+  TG+ 
Sbjct: 1  TAYELLEEYGLPVGLLPKGVTEYTLDETTGKF 32

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	99.58

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=99.58  E-value=1.2e-15  Score=99.60  Aligned_cols=38  Identities=45%  Similarity=0.809  Sum_probs=28.8

Q ss_pred             CHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEech
Q 048574           21 SAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTYE   58 (65)
Q Consensus        21 t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y~   58 (65)
                      ||||+|++||||+||||++|++|+||++||.|+|++-.
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~   38 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKS   38 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecC
Confidence            68999999999999999999999999999999999854

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	65
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	8e-13

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score = 58.3 bits (141), Expect = 8e-13
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 14 ASADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
               +    ++L+EYD P+GI P   T Y  + ET +L
Sbjct: 46 IKGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKL 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	99.52

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=99.52  E-value=6.6e-15  Score=102.27  Aligned_cols=42  Identities=31%  Similarity=0.566  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEec
Q 048574           16 ADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTY   57 (65)
Q Consensus        16 ~~~~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y   57 (65)
                      +.+++++||+|++||||+||||++|++|.+|++||.|+|++-
T Consensus        48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~   89 (170)
T 1ydu_A           48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIP   89 (170)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECS
T ss_pred             ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeC
Confidence            477889999999999999999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	65
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	1e-11

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.6 bits (129), Expect = 1e-11
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 19 EPSAYDVLQEYDFPVGILPKGVTRYALNAETGEL 52
          +    ++L+EYD P+GI P   T Y  + ET +L
Sbjct: 50 QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	65
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	99.49

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=7.2e-15  Score=100.59  Aligned_cols=42  Identities=31%  Similarity=0.566  Sum_probs=38.9

Q ss_pred             CCCCCCHHHHHhhCCCCCcCCCCCcceeEeeCCCCcEEEEec
Q 048574           16 ADSEPSAYDVLQEYDFPVGILPKGVTRYALNAETGELIFGTY   57 (65)
Q Consensus        16 ~~~~~t~yelL~~ygLP~GLLP~gV~~Y~Ld~~tG~F~V~~y   57 (65)
                      ..+..+++|+|++||||+||||++|++|++|++||+|+|++-
T Consensus        47 gk~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~   88 (169)
T d1ydua1          47 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIP   88 (169)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECS
T ss_pred             CCCCCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeC
Confidence            356789999999999999999999999999999999999873