Citrus Sinensis ID: 048626

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCIEDVTS
ccccEEcccccccEEEEEEccccHHHHHHHccccccccEEEHEHHHHHHHccccccEEEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccc
ccEEEEEEcccccEEEEEEcccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEcccccccccEEEccccccHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEEccHHHccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHccHEEEEEcccccccccccccHHcccccccccccccccccEccccc
mrivrkdlipngprsvkmipvdsddLWFAYNlvagkdpfLAITLRKVVRQtksggkdaeWVKLKseiwwpslsgklydkegsiknILENEYFFESVLHAFLKHvdfnvvrcaeispgftenqcHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVkdsggtahvfssmsqgnlgqlTGVAAIlrfplpnltkndkcsmkcmkenivpeqgcrkfnciedvts
mrivrkdlipngprsvkmipVDSDDLWFAYNLVAGKDPFLAITLRKVVRqtksggkdaewvklkseiwwpslsgklyDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPnltkndkcSMKCMKEnivpeqgcrkfnciedvts
MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQChlhllleaeevlYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCIEDVTS
***************VKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVV***********WVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCI*****
MR**RKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKV************WVKLKSEIWWPSLSGKL*DKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLP**********************CRKFNCIE*V**
MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVV*********AEWVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCIEDVTS
MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNL*************NIVPEQGCRKFNC******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKEGSIKNILENEYFFESVLHAFLKHVDFNVVRCAEISPGFTENQCHLHLLLEAEEVLYASSVMNMIKDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSMSQGNLGQLTGVAAILRFPLPNLTKNDKCSMKCMKENIVPEQGCRKFNCIEDVTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q5XIP1385 Protein pelota homolog OS yes no 0.55 0.371 0.369 2e-23
Q5RCE3385 Protein pelota homolog OS yes no 0.55 0.371 0.389 3e-23
Q80X73385 Protein pelota homolog OS yes no 0.55 0.371 0.364 3e-23
Q5ZK01385 Protein pelota homolog OS yes no 0.55 0.371 0.374 8e-23
Q9BRX2385 Protein pelota homolog OS yes no 0.55 0.371 0.369 9e-23
Q58DV0385 Protein pelota homolog OS yes no 0.561 0.379 0.365 9e-23
P48612395 Protein pelota OS=Drosoph yes no 0.519 0.341 0.347 1e-22
Q7ZWC4385 Protein pelota homolog OS yes no 0.561 0.379 0.348 3e-22
Q5U567383 Protein pelota homolog OS N/A no 0.534 0.362 0.387 5e-22
P50444381 Uncharacterized protein R yes no 0.534 0.364 0.361 3e-21
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1 Back     alignment and function desciption
 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 52/195 (26%)

Query: 90  EYFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA----------------- 131
           E F+E V+ A  +H++F VV+C  + SPGF   Q   ++  +A                 
Sbjct: 183 ERFYEQVVQAIQRHINFEVVKCILVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQ 242

Query: 132 -----------EEVLYASSVMNMIKDTKAAQEV----------QH-----------VEVA 159
                      +EVL   +V + + DTKAA EV          QH           VE A
Sbjct: 243 VHASSGHKYSLKEVLCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERA 302

Query: 160 HQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGV 217
           ++ +A+ TL I+D+LFR+  +ATR +YV LV+SVK++ GT  +FSS+  S   LGQLTGV
Sbjct: 303 NEALAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLGQLTGV 362

Query: 218 AAILRFPLPNLTKND 232
           AAILRFP+P L+  +
Sbjct: 363 AAILRFPVPELSDQE 377
Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3 Back     alignment and function description
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1 Back     alignment and function description
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2 Back     alignment and function description
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2 Back     alignment and function description
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2 Back     alignment and function description
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1 Back     alignment and function description
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
225431029 378 PREDICTED: protein pelota [Vitis vinifer 0.526 0.362 0.582 8e-46
255543102 378 pelota, putative [Ricinus communis] gi|2 0.526 0.362 0.566 2e-45
224082576 377 predicted protein [Populus trichocarpa] 0.526 0.363 0.576 5e-44
449442249 379 PREDICTED: protein pelota-like [Cucumis 0.526 0.361 0.550 1e-43
363807988 379 uncharacterized protein LOC100793935 [Gl 0.526 0.361 0.544 5e-43
356535240 379 PREDICTED: protein pelota-like [Glycine 0.526 0.361 0.539 2e-42
388512929237 unknown [Lotus japonicus] 0.526 0.578 0.539 5e-42
297799208 378 hypothetical protein ARALYDRAFT_492022 [ 0.526 0.362 0.534 1e-41
30687676 378 Eukaryotic release factor 1 (eRF1) famil 0.526 0.362 0.529 2e-41
15231020 395 Eukaryotic release factor 1 (eRF1) famil 0.753 0.496 0.45 9e-41
>gi|225431029|ref|XP_002279875.1| PREDICTED: protein pelota [Vitis vinifera] gi|297735305|emb|CBI17667.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 122/189 (64%), Gaps = 52/189 (27%)

Query: 92  FFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEAE------------------ 132
           FFE+VL AFLK+VDFNVVRCA I SPGFT++Q H HLLLEAE                  
Sbjct: 185 FFENVLQAFLKYVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRSIIENKSRIILVH 244

Query: 133 ----------EVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQ 161
                     EVL A +VMNMIKDTKAAQEVQ                     HVEVAH+
Sbjct: 245 TSSGYKHSLKEVLDAPNVMNMIKDTKAAQEVQALKDFFNMLSNDPARACYGPKHVEVAHE 304

Query: 162 RMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAA 219
           RMAVQTL ITDDLFR+  I TR+KYV+ VNSVKDSGGTAH+FSSM  S   L QLTG+AA
Sbjct: 305 RMAVQTLLITDDLFRSADIPTRQKYVNFVNSVKDSGGTAHIFSSMHVSGEQLAQLTGIAA 364

Query: 220 ILRFPLPNL 228
           ILRFPLP+L
Sbjct: 365 ILRFPLPDL 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543102|ref|XP_002512614.1| pelota, putative [Ricinus communis] gi|223548575|gb|EEF50066.1| pelota, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224082576|ref|XP_002306749.1| predicted protein [Populus trichocarpa] gi|222856198|gb|EEE93745.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442249|ref|XP_004138894.1| PREDICTED: protein pelota-like [Cucumis sativus] gi|449477765|ref|XP_004155116.1| PREDICTED: protein pelota-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807988|ref|NP_001242204.1| uncharacterized protein LOC100793935 [Glycine max] gi|255640054|gb|ACU20318.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535240|ref|XP_003536156.1| PREDICTED: protein pelota-like [Glycine max] Back     alignment and taxonomy information
>gi|388512929|gb|AFK44526.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297799208|ref|XP_002867488.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] gi|297313324|gb|EFH43747.1| hypothetical protein ARALYDRAFT_492022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687676|ref|NP_194495.3| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|3941543|gb|AAC82379.1| pelota [Arabidopsis thaliana] gi|4469016|emb|CAB38277.1| pelota (PEL1) [Arabidopsis thaliana] gi|7269619|emb|CAB81415.1| pelota (PEL1) [Arabidopsis thaliana] gi|18377690|gb|AAL66995.1| putative pelota (PEL1) protein [Arabidopsis thaliana] gi|20465995|gb|AAM20219.1| putative pelota protein (PEL1) [Arabidopsis thaliana] gi|332659974|gb|AEE85374.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15231020|ref|NP_191398.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] gi|6735351|emb|CAB68177.1| pelota-like protein [Arabidopsis thaliana] gi|332646255|gb|AEE79776.1| Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2137732378 PEL1 "AT4G27650" [Arabidopsis 0.334 0.230 0.604 1.2e-57
TAIR|locus:2085465395 AT3G58390 "AT3G58390" [Arabido 0.311 0.205 0.638 3.2e-41
UNIPROTKB|Q58DV0385 PELO "Protein pelota homolog" 0.338 0.228 0.5 5.8e-34
RGD|1359591385 Pelo "pelota homolog (Drosophi 0.326 0.220 0.505 7.9e-34
UNIPROTKB|Q5ZK01385 PELO "Protein pelota homolog" 0.338 0.228 0.505 1e-33
MGI|MGI:2145154385 Pelo "pelota homolog (Drosophi 0.326 0.220 0.505 1.6e-33
UNIPROTKB|F2Z5N9385 PELO "Uncharacterized protein" 0.326 0.220 0.494 4.7e-33
UNIPROTKB|Q9BRX2385 PELO "Protein pelota homolog" 0.326 0.220 0.505 5.8e-33
FB|FBgn0011207395 pelo "pelota" [Drosophila mela 0.357 0.235 0.452 1.3e-32
ZFIN|ZDB-GENE-040426-1074385 pelo "pelota homolog (Drosophi 0.338 0.228 0.455 1e-30
TAIR|locus:2137732 PEL1 "AT4G27650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 257 (95.5 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
 Identities = 55/91 (60%), Positives = 70/91 (76%)

Query:   142 NMI--KDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGT 199
             NM+  +  +A    +HVEVA++RMA+QTL ITD+LFRN+ + TRKKYV+LV SVKDSGG 
Sbjct:   283 NMLSTEPDRACYGPKHVEVANERMAIQTLLITDELFRNSDVKTRKKYVNLVESVKDSGGD 342

Query:   200 AHVFSSM--SQGNLGQLTGVAAILRFPLPNL 228
             A +FS+M  S   L QLTG+AA+LRFPLP L
Sbjct:   343 AFIFSAMHVSGEQLAQLTGIAALLRFPLPEL 373
GO:0003747 "translation release factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006415 "translational termination" evidence=ISS
GO:0007126 "meiosis" evidence=ISS
TAIR|locus:2085465 AT3G58390 "AT3G58390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025125001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (378 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
•   • • 0.836
GSVIVG00016616001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)
    • • 0.693
GSVIVG00002292001
SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)
      • 0.610
GSVIVG00004407001
SubName- Full=Chromosome undetermined scaffold_690, whole genome shotgun sequence; (249 aa)
  • •   0.475
GSVIVG00015193001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (249 aa)
  • •   0.467
GSVIVG00006153001
SubName- Full=Chromosome undetermined scaffold_165, whole genome shotgun sequence; (269 aa)
  • •   0.451
GSVIVG00010464001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa)
• ••    0.450
GSVIVG00024178001
RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa)
  •     0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
pfam03465100 pfam03465, eRF1_3, eRF1 domain 3 1e-21
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 1e-13
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 6e-07
pfam03463133 pfam03463, eRF1_1, eRF1 domain 1 9e-06
COG1537352 COG1537, PelA, Predicted RNA-binding proteins [Gen 6e-04
TIGR00111351 TIGR00111, pelota, mRNA surveillance protein pelot 0.004
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3 Back     alignment and domain information 
 Score = 86.1 bits (214), Expect = 1e-21
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 143 MIKDT-KAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAH 201
           + KDT  A   V+ V  A +  AV+TL I+D+L R+  +ATR K   LV + ++SGG   
Sbjct: 15  LAKDTGLAVYGVEEVLKALEMGAVETLLISDELLRSRDVATRNKIEWLVENAEESGGKVE 74

Query: 202 VFSSMSQG--NLGQLTGVAAILRFPL 225
           + S  S+    L    G+AAILR+ +
Sbjct: 75  IVSDESEEGEQLKGFGGIAAILRYKV 100

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 100
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information
>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1 Back     alignment and domain information
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG2869379 consensus Meiotic cell division protein Pelota/DOM 100.0
TIGR00111351 pelota probable translation factor pelota. This mo 100.0
COG1537352 PelA Predicted RNA-binding proteins [General funct 100.0
TIGR00108409 eRF peptide chain release factor eRF/aRF, subunit 99.96
PRK04011411 peptide chain release factor 1; Provisional 99.95
TIGR03676403 aRF1/eRF1 peptide chain release factor 1, archaeal 99.94
PF03465113 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This do 99.84
PF03463132 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do 99.82
COG1503411 eRF1 Peptide chain release factor 1 (eRF1) [Transl 99.79
PF03464133 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do 99.03
KOG0688431 consensus Peptide chain release factor 1 (eRF1) [T 99.02
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 94.35
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-65  Score=471.14  Aligned_cols=230  Identities=47%  Similarity=0.750  Sum_probs=222.4

Q ss_pred             CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626            1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE   80 (260)
Q Consensus         1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~   80 (260)
                      ||++++++.+||.|+|+++||++|||||+||||++||.|+|.|.|||+.+..+|+++++|++++|+|+   ||+++||+.
T Consensus         1 MKli~K~~~rng~G~vtmvpEe~eDmw~~ynli~~gD~v~a~T~rkvq~e~a~G~~~s~rv~~~L~i~---VesidfD~~   77 (379)
T KOG2869|consen    1 MKLIRKDIERNGSGSVTMVPEESEDLWHLYNLIQVGDSVIASTIRKVQKEEATGKTKSSRVLLKLKIK---VESIDFDTK   77 (379)
T ss_pred             CccchhhhhcCCCceEEECcCchhHHHHHHhhccCCceeEEEEEEEeeeccccCcccceEEEEEEEEE---EEEeecccc
Confidence            99999999999999999999999999999999999999999999999999989988899999999999   999999999


Q ss_pred             CCe-----eeccccH-----------------------------------------------------------------
Q 048626           81 GSI-----KNILENE-----------------------------------------------------------------   90 (260)
Q Consensus        81 ~~~-----~ni~e~~-----------------------------------------------------------------   90 (260)
                      ++.     +|+++|+                                                                 
T Consensus        78 ~~~L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~t  157 (379)
T KOG2869|consen   78 ACVLRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSST  157 (379)
T ss_pred             ccEEEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCcccccceeeeehhcCceeEEEechhHH
Confidence            988     6666655                                                                 


Q ss_pred             --------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------
Q 048626           91 --------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------  131 (260)
Q Consensus        91 --------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------  131 (260)
                                                +||++|.+++.+|++|+.++|+|| ||||+++.|++|+.++|            
T Consensus       158 ilr~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~~q~A~~~~~k~il~nk  237 (379)
T KOG2869|consen  158 ILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYLFQQAVKLDLKLILENK  237 (379)
T ss_pred             HHHHhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHHHHHHHHhchhhhhhcc
Confidence                                      999999999999999999999999 99999999999998776            


Q ss_pred             ----------------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCC
Q 048626          132 ----------------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL  174 (260)
Q Consensus       132 ----------------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l  174 (260)
                                      +|+|++|++++.++++|+++|++                     ||.+|+|+|||+||||||++
T Consensus       238 ~kf~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~l  317 (379)
T KOG2869|consen  238 SKFPLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDEL  317 (379)
T ss_pred             cceeEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhh
Confidence                            99999999999999999999999                     99999999999999999999


Q ss_pred             ccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCCcc
Q 048626          175 FRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKNDK  233 (260)
Q Consensus       175 ~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~~~  233 (260)
                      ||+.|+++|++|+.|++.|+.+||+|+|||+.  +|+||.+|||||||||||+|+|||+|.
T Consensus       318 fr~~DV~tRkkyv~lvesVk~~~gkv~Ifss~H~SGEqL~qltGiaAiLrfp~pel~d~e~  378 (379)
T KOG2869|consen  318 FRSQDVATRKKYVRLVESVKENNGKVFIFSSLHVSGEQLAQLTGIAAILRFPLPELDDSEG  378 (379)
T ss_pred             cccccHHHHHHHHHHHHHHHhcCCcEEEEehhhccHHHHHhhcCeeEEEecCCCccccccC
Confidence            99999999999999999999999999999999  999999999999999999999999875

>TIGR00111 pelota probable translation factor pelota Back     alignment and domain information
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only] Back     alignment and domain information
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1 Back     alignment and domain information
>PRK04011 peptide chain release factor 1; Provisional Back     alignment and domain information
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms Back     alignment and domain information
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre Back     alignment and domain information
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1x52_A124 Solution Structures Of The C-Terminal Domain Of The 7e-18
2vgm_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 3e-10
2vgn_A386 Structure Of Yeast Dom34 : A Protein Related To Tra 4e-10
3mca_B390 Structure Of The Dom34-Hbs1 Complex And Implication 1e-09
>pdb|1X52|A Chain A, Solution Structures Of The C-Terminal Domain Of The Human Pelota Homolog (Cgi-17) Length = 124 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 71/114 (62%), Gaps = 23/114 (20%)
Query: 137 ASSVMNMIKDTKAAQEV----------QH-----------VEVAHQRMAVQTLHITDDLF 175
           + +V + + DTKAA EV          QH           VE A++ MA+ TL I+D+LF
Sbjct: 6   SGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELF 65
Query: 176 RNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPN 227
           R+  +ATR +YV LV+SVK++ GT  +FSS+  S   L QLTGVAAILRFP+P+
Sbjct: 66  RHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPS 119
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386 Back     alignment and structure
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386 Back     alignment and structure
>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 6e-23
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 7e-23
3mca_B 390 Protein DOM34, elongation factor 1 alpha-like prot 4e-12
2vgn_A386 DOM34; translation termination factor, protein bio 4e-22
2vgn_A 386 DOM34; translation termination factor, protein bio 3e-08
3agj_B358 Protein pelota homolog; GTP binding, translation-h 1e-20
3agj_B 358 Protein pelota homolog; GTP binding, translation-h 5e-08
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 2e-18
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 5e-08
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 1e-17
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 6e-10
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 2e-17
3j15_A 357 Protein pelota; ribosome recycling, ribosome, arch 1e-08
2qi2_A347 Pelota, cell division protein pelota related prote 3e-12
2qi2_A347 Pelota, cell division protein pelota related prote 2e-08
3agk_A373 Peptide chain release factor subunit 1; translatio 9e-09
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 7e-04
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Length = 124 Back     alignment and structure
 Score = 89.8 bits (223), Expect = 6e-23
 Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 23/113 (20%)

Query: 139 SVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDLFRN 177
           +V + + DTKAA EV+                      VE A++ MA+ TL I+D+LFR+
Sbjct: 8   TVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRH 67

Query: 178 TAIATRKKYVDLVNSVKDSGGTAHVFSSMSQ-GN-LGQLTGVAAILRFPLPNL 228
             +ATR +YV LV+SVK++ GT  +FSS+   G  L QLTGVAAILRFP+P+ 
Sbjct: 68  QDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLTGVAAILRFPVPSG 120
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347 Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Length = 437 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3mca_B390 Protein DOM34, elongation factor 1 alpha-like prot 100.0
2vgn_A386 DOM34; translation termination factor, protein bio 100.0
3obw_A364 Protein pelota homolog; SM fold, hydrolase; 2.60A 100.0
3oby_A352 Protein pelota homolog; SM fold, hydrolase; 2.90A 100.0
3j15_A357 Protein pelota; ribosome recycling, ribosome, arch 100.0
2qi2_A347 Pelota, cell division protein pelota related prote 100.0
3agj_B358 Protein pelota homolog; GTP binding, translation-h 100.0
1x52_A124 Pelota homolog, CGI-17; ERF1_3 domain, structural 99.94
1dt9_A437 ERF1, protein (eukaryotic peptide chain release fa 99.94
3e20_C441 Eukaryotic peptide chain release factor subunit 1; 99.93
3agk_A373 Peptide chain release factor subunit 1; translatio 99.91
3ir9_A166 Peptide chain release factor subunit 1; structural 99.85
1ipa_A 274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 81.36
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=1.6e-64  Score=480.23  Aligned_cols=232  Identities=31%  Similarity=0.501  Sum_probs=187.8

Q ss_pred             CeeeeeecCCCCCceEEEeecCCchHHHHHhhccCCCeEEEEeeEeEeeccCCCCccceEEEEEEEEECCccceeecccC
Q 048626            1 MRIVRKDLIPNGPRSVKMIPVDSDDLWFAYNLVAGKDPFLAITLRKVVRQTKSGGKDAEWVKLKSEIWWPSLSGKLYDKE   80 (260)
Q Consensus         1 MKi~~~~~~~~~~g~v~l~pE~~DDLW~LynlI~~GD~V~a~T~Rkv~~~~~~g~~~~~r~~~~L~I~~~~Ve~vefd~~   80 (260)
                      |||+++++.++++|+|+|+||++||||||||||++||.|+|+|+|||++++++|+++++|++|+|+|+   ||+++|||+
T Consensus         1 Mkl~~~~~~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~---Ve~ief~~~   77 (390)
T 3mca_B            1 MKLIQKNIEKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRIL---VENMDFDTK   77 (390)
T ss_dssp             -------CBCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EE---CCCEEECTT
T ss_pred             CccccccccCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEE---EEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999888988999999999999   999999999


Q ss_pred             CCe-----eeccc----------------cH-------------------------------------------------
Q 048626           81 GSI-----KNILE----------------NE-------------------------------------------------   90 (260)
Q Consensus        81 ~~~-----~ni~e----------------~~-------------------------------------------------   90 (260)
                      +++     +++.+                |.                                                 
T Consensus        78 ~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~  157 (390)
T 3mca_B           78 AAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMT  157 (390)
T ss_dssp             SSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCE
T ss_pred             CCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEE
Confidence            887     11111                11                                                 


Q ss_pred             --------------------------HHHHHHHHHHHhccccCCccEEEE-cCcccHHHHHHHHHHHH------------
Q 048626           91 --------------------------YFFESVLHAFLKHVDFNVVRCAEI-SPGFTENQCHLHLLLEA------------  131 (260)
Q Consensus        91 --------------------------~Ff~~V~~~l~~~~~~~~~k~III-GPGf~k~~f~~yl~~~~------------  131 (260)
                                                +||++|++++.+++++.++++||| ||||+|++|++||++++            
T Consensus       158 ~~~~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~  237 (390)
T 3mca_B          158 ILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSK  237 (390)
T ss_dssp             EEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHG
T ss_pred             EEEEEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhc
Confidence                                      899999999999999999999999 99999999999998741            


Q ss_pred             ----------------HHHhhhhHHHHHHHHHHHHhHHH---------------------HHHHHHhcCCccEEEEecCC
Q 048626          132 ----------------EEVLYASSVMNMIKDTKAAQEVQ---------------------HVEVAHQRMAVQTLHITDDL  174 (260)
Q Consensus       132 ----------------~EvL~~~~v~~~l~~~k~~~E~~---------------------eV~~A~e~GAVetLLIsD~l  174 (260)
                                      +|+|++|+++++++++++++|.+                     +|.+|+++|||+||||+|++
T Consensus       238 ~k~~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l  317 (390)
T 3mca_B          238 NKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL  317 (390)
T ss_dssp             GGEEEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETT
T ss_pred             CeEEEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEeccc
Confidence                            89999999999999999999998                     99999999999999999999


Q ss_pred             ccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCCCCcccc
Q 048626          175 FRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLTKNDKCS  235 (260)
Q Consensus       175 ~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~~~~~~~  235 (260)
                      +|+.+++.|+++.+|++.|+++||+|+|||++  +|+||++|||||||||||+|+|||+++++
T Consensus       318 ~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL~~lgGiaAiLRy~i~~~~~~~~~~  380 (390)
T 3mca_B          318 FRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQLDLLSGIAAILTYPVDEEDISEDEE  380 (390)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHHHHTTSEEEEBSSCCCCCCCCCCC-
T ss_pred             ccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhhhcCCcEEEEEeccCCccchhhhcc
Confidence            99999999999999999999999999999998  99999999999999999999999887755
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Back     alignment and structure
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Back     alignment and structure
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Back     alignment and structure
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2 Back     alignment and structure
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A Back     alignment and structure
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe} Back     alignment and structure
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Back     alignment and structure
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d2vgna3104 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisi 1e-20
d1x52a1111 d.79.3.2 (A:8-118) Cell division protein pelota {H 2e-20
d2qi2a395 d.79.3.2 (A:244-338) Cell division protein pelota 2e-15
d2vgna1135 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae 9e-11
d2qi2a1126 b.38.4.1 (A:1-126) Cell division protein pelota {T 1e-08
d1dt9a2146 d.79.3.2 (A:277-422) C-terminal domain of eukaryot 1e-05
d2vgna2142 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi 1e-04
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 104 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 81.7 bits (202), Expect = 1e-20
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 131 AEEVLYASSVMNMI--KDTKAAQEVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVD 188
           ++E++     +  +   D KA    + V  A +  A+  L +TD +  +  IA R++Y+ 
Sbjct: 1   SKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLK 60

Query: 189 LVNSVKDSGGTAHVFSSMSQGN--LGQLTGVAAILRFPLPNL 228
           L++SV+ +GG A V S++      L QLTG+A IL++PLP+L
Sbjct: 61  LMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDL 102
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 95 Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135 Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126 Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.93
d1x52a1111 Cell division protein pelota {Human (Homo sapiens) 99.93
d2qi2a1126 Cell division protein pelota {Thermoplasma acidoph 99.91
d2vgna1135 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.88
d2qi2a395 Cell division protein pelota {Thermoplasma acidoph 99.87
d1dt9a2146 C-terminal domain of eukaryotic peptide chain rele 99.79
d2vgna2142 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 99.44
d2qi2a2117 Cell division protein pelota {Thermoplasma acidoph 98.77
d1dt9a1134 Middle domain of eukaryotic peptide chain release 97.47
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 89.27
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.93  E-value=1e-26  Score=181.74  Aligned_cols=79  Identities=38%  Similarity=0.629  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhcCCccEEEEecCCccCcchhhHHHHHHHHHHHHhcCCEEEEEcCC--chhcccccccEEEEeecCCCCCC
Q 048626          152 EVQHVEVAHQRMAVQTLHITDDLFRNTAIATRKKYVDLVNSVKDSGGTAHVFSSM--SQGNLGQLTGVAAILRFPLPNLT  229 (260)
Q Consensus       152 E~~eV~~A~e~GAVetLLIsD~l~r~~d~~~R~~~~~l~e~v~~~Gg~V~I~Ss~--~GeqL~~lGGIAAILRypi~~l~  229 (260)
                      ..++|.+|+++|||+||||||+++|+.+++.|+++.+|++.|+++||+|+|||++  +|+||++|||||||||||+||+|
T Consensus        24 G~~~v~~A~e~gAv~~LlIsd~l~r~~~~~~r~~~~~l~~~~~~~g~~v~iiS~~~~~G~qL~~lGGiaaiLRy~i~d~d  103 (104)
T d2vgna3          24 GEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEELDQLTGIACILKYPLPDLD  103 (104)
T ss_dssp             SHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHHHHTTTEEEEESSCCCCSS
T ss_pred             CHHHHHHHHHhCCceEEEEecccccccccchHHHHHHHHHHHHhcCCEEEEEcCCChhHHHHHccCCEEEEEeccCCccc
Confidence            3339999999999999999999999999999999999999999999999999999  99999999999999999999988


Q ss_pred             C
Q 048626          230 K  230 (260)
Q Consensus       230 ~  230 (260)
                      |
T Consensus       104 e  104 (104)
T d2vgna3         104 E  104 (104)
T ss_dssp             C
T ss_pred             C
Confidence            6
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure