Citrus Sinensis ID: 048634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
ccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccEEEEEccccccccccEEEcHHHHHccccEEEEEccccHHHHHHHHHcccccccccccccccccccEEEEEEHHHHccc
cccccccccHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHHHccccEEEcccccccccEEEEEEcccccccEEEcccccccccccccEEEEEcccccccccEEEEcHHHHHHccEEEEEEEcccHHHHHHHHHcccccccccccHcEccccEEEEEEcHHHHHcc
vvpkdhddsnyklaydgflsqvpittgnvYAINDALSAEGAAEDYETCLKHLTKsnilatsaatgfpkfdlmllgmgpdghiaslfpghpllkenEKWVTFikdspkppperitftfpvinsSAYIAMVVCGAGKSSAVQTAlgnnqnsdllPVQMALAEEEFTwfldkdatskl
vvpkdhddsnYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIkdspkpppeRITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEftwfldkdatskl
VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
**********YKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIK********RITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFL********
VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
********SNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
****DHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query175 2.2.26 [Sep-21-2011]
A2Z3C4324 Probable 6-phosphoglucono N/A no 1.0 0.540 0.768 6e-77
Q69NG5324 Probable 6-phosphoglucono yes no 1.0 0.540 0.768 7e-77
Q84WW2325 Probable 6-phosphoglucono yes no 0.988 0.532 0.708 1e-68
Q6Z9C3327 Probable 6-phosphoglucono no no 1.0 0.535 0.677 7e-67
A2YXS5327 Probable 6-phosphoglucono N/A no 1.0 0.535 0.677 7e-67
Q8LG70259 Probable 6-phosphoglucono no no 0.982 0.664 0.547 5e-50
Q9FIN1261 Probable 6-phosphoglucono no no 0.982 0.659 0.536 1e-48
Q8LEV7252 Probable 6-phosphoglucono no no 0.948 0.658 0.540 3e-47
Q6Z4H0280 Probable 6-phosphoglucono no no 0.994 0.621 0.497 2e-45
A2YNH4280 Probable 6-phosphoglucono N/A no 0.994 0.621 0.497 2e-45
>sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2 Back     alignment and function desciption
 Score =  286 bits (731), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 156/177 (88%), Gaps = 2/177 (1%)

Query: 1   VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILAT 60
           VVPKDH+DSNYKLA DGFLS+VPI TG VYAINDALSAEGAA+DYETCLK L K+ ++A 
Sbjct: 145 VVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAM 204

Query: 61  SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVI 120
           S +TGFP+FD+MLLGMGPDGHIASLFPGHPL+ EN+KWVT+IKDSPKPPPERITFTFPVI
Sbjct: 205 SQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYIKDSPKPPPERITFTFPVI 264

Query: 121 NSSAYIAMVVCGAGKSSAVQTALGNNQ-NSDLLPVQMALAEE-EFTWFLDKDATSKL 175
           NSSAY+AMVV GAGK+ AVQ AL + Q +SDLLPV+MA+ ++ EFTWF DK A S L
Sbjct: 265 NSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321
Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
Oryza sativa subsp. indica (taxid: 39946)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1
>sp|Q69NG5|6PGL4_ORYSJ Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2 Back     alignment and function description
>sp|Q84WW2|6PGL5_ARATH Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z9C3|6PGL3_ORYSJ Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1 Back     alignment and function description
>sp|A2YXS5|6PGL3_ORYSI Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2 Back     alignment and function description
>sp|Q8LG70|6PGL2_ARATH Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana GN=At3g49360 PE=2 SV=2 Back     alignment and function description
>sp|Q9FIN1|6PGL4_ARATH Probable 6-phosphogluconolactonase 4 OS=Arabidopsis thaliana GN=At5g24410 PE=2 SV=1 Back     alignment and function description
>sp|Q8LEV7|6PGL3_ARATH Probable 6-phosphogluconolactonase 3 OS=Arabidopsis thaliana GN=At5g24420 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z4H0|6PGL2_ORYSJ Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1 Back     alignment and function description
>sp|A2YNH4|6PGL2_ORYSI Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. indica GN=OsI_025867 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
224132652261 predicted protein [Populus trichocarpa] 1.0 0.670 0.782 5e-78
224118424261 predicted protein [Populus trichocarpa] 1.0 0.670 0.777 8e-78
118486786261 unknown [Populus trichocarpa] 1.0 0.670 0.782 1e-77
449497411 321 PREDICTED: probable 6-phosphogluconolact 1.0 0.545 0.796 1e-76
399920238 346 6-phosphogluconolactonase [Rosa rugosa] 1.0 0.505 0.714 2e-76
225455268 318 PREDICTED: probable 6-phosphogluconolact 1.0 0.550 0.771 2e-76
302143957257 unnamed protein product [Vitis vinifera] 1.0 0.680 0.771 6e-76
449456421 321 PREDICTED: probable 6-phosphogluconolact 1.0 0.545 0.790 8e-76
255554349256 6-phosphogluconolactonase, putative [Ric 0.994 0.679 0.771 3e-75
152126071 324 RecName: Full=Probable 6-phosphogluconol 1.0 0.540 0.768 3e-75
>gi|224132652|ref|XP_002321375.1| predicted protein [Populus trichocarpa] gi|222868371|gb|EEF05502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 154/175 (88%)

Query: 1   VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILAT 60
           VVPKDH DSNYKLA+DGFLS+VPI  GNVYAINDALS+EGAA+DYETCLKHL  + ++  
Sbjct: 87  VVPKDHPDSNYKLAFDGFLSKVPIPPGNVYAINDALSSEGAADDYETCLKHLVHTGVINI 146

Query: 61  SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVI 120
           S+ +GFPKFDLML+GMGPDGH+ASLFPGHPLLKEN+KWVT I DSPKPPPERITFTFPVI
Sbjct: 147 SSLSGFPKFDLMLVGMGPDGHVASLFPGHPLLKENQKWVTHITDSPKPPPERITFTFPVI 206

Query: 121 NSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
           NSSAYIA+VVCGAGK+S VQTALG +QNS++ PVQM   E E  WFLDKDA SKL
Sbjct: 207 NSSAYIALVVCGAGKASIVQTALGKSQNSEVFPVQMVSPEGELKWFLDKDAASKL 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118424|ref|XP_002317815.1| predicted protein [Populus trichocarpa] gi|222858488|gb|EEE96035.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486786|gb|ABK95228.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449497411|ref|XP_004160394.1| PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|399920238|gb|AFP55585.1| 6-phosphogluconolactonase [Rosa rugosa] Back     alignment and taxonomy information
>gi|225455268|ref|XP_002273657.1| PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143957|emb|CBI23062.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456421|ref|XP_004145948.1| PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255554349|ref|XP_002518214.1| 6-phosphogluconolactonase, putative [Ricinus communis] gi|223542619|gb|EEF44157.1| 6-phosphogluconolactonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|152126071|sp|A2Z3C4.2|6PGL4_ORYSI RecName: Full=Probable 6-phosphogluconolactonase 4, chloroplastic; Short=6PGL 4; Flags: Precursor Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query175
TAIR|locus:2152906325 EMB2024 "AT5G24400" [Arabidops 0.988 0.532 0.708 6e-64
TAIR|locus:2082916259 PGL2 "AT3G49360" [Arabidopsis 0.96 0.648 0.565 8.8e-47
TAIR|locus:2152911261 PGL4 "6-phosphogluconolactonas 0.982 0.659 0.547 6.2e-46
TAIR|locus:2152916252 PGL5 "6-phosphogluconolactonas 0.948 0.658 0.540 1.5e-44
TAIR|locus:2023842268 PGL1 "AT1G13700" [Arabidopsis 1.0 0.652 0.491 4.6e-41
RGD|1307001257 Pgls "6-phosphogluconolactonas 0.937 0.638 0.420 3.8e-30
MGI|MGI:1913421257 Pgls "6-phosphogluconolactonas 0.937 0.638 0.420 6.2e-30
UNIPROTKB|O95336258 PGLS "6-phosphogluconolactonas 0.942 0.639 0.414 1e-29
UNIPROTKB|F1MM83258 PGLS "6-phosphogluconolactonas 0.948 0.643 0.405 1.3e-29
UNIPROTKB|Q2TBQ8258 PGLS "6-phosphogluconolactonas 0.948 0.643 0.405 1.6e-29
TAIR|locus:2152906 EMB2024 "AT5G24400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 124/175 (70%), Positives = 142/175 (81%)

Query:     1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILAT 60
             VVPK+HDDSNYKLAYD FLS+VPI  GNVYAIN+ALSAE AA+DYETCLKHL  +NIL  
Sbjct:   153 VVPKNHDDSNYKLAYDSFLSKVPIPPGNVYAINEALSAEAAADDYETCLKHLVNTNILRV 212

Query:    61 SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVI 120
             S +TGFPKFDLMLLGMGPDGH+ASLFPGH L  E++KWV  I DSPKPP ERITFTFPVI
Sbjct:   213 SESTGFPKFDLMLLGMGPDGHVASLFPGHGLCNESKKWVVSISDSPKPPSERITFTFPVI 272

Query:   121 NSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
             NSSA++A+VVCG+GK+ AV+ AL    N  + P     AE+E  WFLDK A+SKL
Sbjct:   273 NSSAHVALVVCGSGKAEAVEAALKKTGN--VPPAGSVSAEDELVWFLDKPASSKL 325
GO:0003824 "catalytic activity" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0006098 "pentose-phosphate shunt" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0017057 "6-phosphogluconolactonase activity" evidence=IEA;IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0002229 "defense response to oomycetes" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0071461 "cellular response to redox state" evidence=IMP
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2082916 PGL2 "AT3G49360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152911 PGL4 "6-phosphogluconolactonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152916 PGL5 "6-phosphogluconolactonase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023842 PGL1 "AT1G13700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1307001 Pgls "6-phosphogluconolactonase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1913421 Pgls "6-phosphogluconolactonase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O95336 PGLS "6-phosphogluconolactonase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM83 PGLS "6-phosphogluconolactonase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBQ8 PGLS "6-phosphogluconolactonase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WW26PGL5_ARATH3, ., 1, ., 1, ., 3, 10.70850.98850.5323yesno
Q69NG56PGL4_ORYSJ3, ., 1, ., 1, ., 3, 10.76831.00.5401yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00150082
SubName- Full=Putative uncharacterized protein; (261 aa)
(Populus trichocarpa)
Predicted Functional Partners:
G6PDH2
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (514 aa)
• •  •• 0.953
G6PDH
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (510 aa)
• •  •• 0.953
fgenesh4_pm.C_LG_XIV000487
glucose-6-phosphate 1-dehydrogenase (EC-1.1.1.49) (571 aa)
• •  •• 0.949
eugene3.00031378
glucose-6-phosphate 1-dehydrogenase (EC-1.1.1.49) (601 aa)
• •  •• 0.947
estExt_Genewise1_v1.C_LG_I7789
glucose-6-phosphate 1-dehydrogenase (EC-1.1.1.49) (604 aa)
• •  •• 0.945
estExt_fgenesh4_pm.C_LG_XIII0018
hypothetical protein (474 aa)
• •  •• 0.945
estExt_fgenesh4_pm.C_1230010
SubName- Full=Putative uncharacterized protein; (489 aa)
•    •• 0.914
estExt_Genewise1_v1.C_LG_XIX0814
hypothetical protein (190 aa)
•    •• 0.913
grail3.0008041101
phosphogluconate dehydrogenase (decarboxylating) (EC-1.1.1.44) (495 aa)
•    •• 0.913
estExt_fgenesh4_pm.C_LG_IV0341
phosphogluconate dehydrogenase (decarboxylating) (EC-1.1.1.44) (489 aa)
•    •• 0.913

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
PLN02360268 PLN02360, PLN02360, probable 6-phosphogluconolacto 5e-69
cd01400219 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6P 2e-65
pfam01182191 pfam01182, Glucosamine_iso, Glucosamine-6-phosphat 4e-55
TIGR01198233 TIGR01198, pgl, 6-phosphogluconolactonase 2e-51
COG0363238 COG0363, NagB, 6-phosphogluconolactonase/Glucosami 2e-44
cd01399232 cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Gluco 4e-12
PRK00443261 PRK00443, nagB, glucosamine-6-phosphate deaminase; 9e-12
TIGR00502259 TIGR00502, nagB, glucosamine-6-phosphate isomerase 2e-08
PTZ00285253 PTZ00285, PTZ00285, glucosamine-6-phosphate isomer 2e-07
PRK12358239 PRK12358, PRK12358, putative 6-phosphogluconolacto 5e-04
PRK09762232 PRK09762, PRK09762, galactosamine-6-phosphate isom 0.002
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase Back     alignment and domain information 
 Score =  210 bits (535), Expect = 5e-69
 Identities = 96/179 (53%), Positives = 123/179 (68%), Gaps = 4/179 (2%)

Query: 1   VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILAT 60
           VV K+H DSNYKLA DG LS+VP+   +VY+IND ++AE AA DYE  ++ L K+  +  
Sbjct: 83  VVAKNHADSNYKLAKDGLLSKVPVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGV 142

Query: 61  SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVI 120
           S  +  PKFDL+LLGMG DGH+ASLFP HP L+E + WVTFI DSPKPPPERITFT PVI
Sbjct: 143 SDISDCPKFDLILLGMGSDGHVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVI 202

Query: 121 NSSAYIAMVVCGAGKSSAVQTALGNNQNSD---LLPVQMALAEE-EFTWFLDKDATSKL 175
           NS++ +A+V  G  K++AV  A+ +         LP +M    + +  WFLDK A SKL
Sbjct: 203 NSASNVAVVATGESKANAVHLAIDDVTEGPDAPSLPARMVQPTKGKLVWFLDKPAASKL 261

Length = 268
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate Back     alignment and domain information
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Back     alignment and domain information
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase Back     alignment and domain information
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium Back     alignment and domain information
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase Back     alignment and domain information
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 175
TIGR01198233 pgl 6-phosphogluconolactonase. This enzyme of the 100.0
PLN02360268 probable 6-phosphogluconolactonase 100.0
KOG3147252 consensus 6-phosphogluconolactonase - like protein 100.0
PTZ00285253 glucosamine-6-phosphate isomerase; Provisional 100.0
cd01400219 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfam 100.0
COG0363238 NagB 6-phosphogluconolactonase/Glucosamine-6-phosp 100.0
PRK09762232 galactosamine-6-phosphate isomerase; Provisional 100.0
TIGR00502259 nagB glucosamine-6-phosphate isomerase. The set of 100.0
PRK12358239 putative 6-phosphogluconolactonase; Provisional 100.0
PF01182199 Glucosamine_iso: Glucosamine-6-phosphate isomerase 100.0
PRK02122 652 glucosamine-6-phosphate deaminase-like protein; Va 100.0
cd01399232 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-p 100.0
PRK00443261 nagB glucosamine-6-phosphate deaminase; Provisiona 100.0
KOG3148273 consensus Glucosamine-6-phosphate isomerase [Carbo 99.97
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 99.93
COG2390321 DeoR Transcriptional regulator, contains sigma fac 95.85
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 95.64
PRK15418318 transcriptional regulator LsrR; Provisional 93.17
>TIGR01198 pgl 6-phosphogluconolactonase Back     alignment and domain information 
Probab=100.00  E-value=7.2e-50  Score=321.57  Aligned_cols=166  Identities=44%  Similarity=0.680  Sum_probs=148.9

Q ss_pred             CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEccccc
Q 048634            1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDAL-SAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPD   79 (175)
Q Consensus         1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~-~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~D   79 (175)
                      |||++|++||++++|++||++++++++|+|+++++. +++++|++|++.|++..+.        .+.|.||+++||||+|
T Consensus        66 ~Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~--------~~~p~fDl~lLGmG~D  137 (233)
T TIGR01198        66 YVPLDHADSNTGLAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQP--------IVFPVFDLLLLGMGPD  137 (233)
T ss_pred             ccCCCCccchHHHHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhcc--------cCCCcccEEEECCcCC
Confidence            799999999999999999999999999999999876 7999999999999886421        1246799999999999


Q ss_pred             CcccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHc-CCCCCccccccccc
Q 048634           80 GHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALG-NNQNSDLLPVQMAL  158 (175)
Q Consensus        80 GH~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~-~~~~~~~~Pas~l~  158 (175)
                      |||||||||++.+++..+++....++|++|++|||||++.|++||+|+|+++|++|+++++++++ ++.+. .+|++.++
T Consensus       138 GHtASlFPg~~~l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~~~-~~Pas~l~  216 (233)
T TIGR01198       138 GHTASLFPHTPALQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAEPY-PLPAAGVL  216 (233)
T ss_pred             ccceeCCCCChhhccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCCcc-cCCHhHcC
Confidence            99999999998887777776666678999999999999999999999999999999999999998 45544 49999999


Q ss_pred             cCCeEEEEechhhhcCC
Q 048634          159 AEEEFTWFLDKDATSKL  175 (175)
Q Consensus       159 ~~~~~~~~~D~~Aa~~l  175 (175)
                      .|++++||+|++|+++|
T Consensus       217 ~~~~~~~~~D~~Aa~~l  233 (233)
T TIGR01198       217 HSGKTLWLLDYAAARKL  233 (233)
T ss_pred             CCCcEEEEEChHhhhcC
Confidence            88999999999999876

This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
>PLN02360 probable 6-phosphogluconolactonase Back     alignment and domain information
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate Back     alignment and domain information
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09762 galactosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>TIGR00502 nagB glucosamine-6-phosphate isomerase Back     alignment and domain information
>PRK12358 putative 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3 Back     alignment and domain information
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated Back     alignment and domain information
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium Back     alignment and domain information
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional Back     alignment and domain information
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3ico_A268 Crystal Structure Of 6-Phosphogluconolactonase From 4e-28
3oc6_A248 Crystal Structure Of 6-Phosphogluconolactonase From 6e-23
3tx2_A251 Structure Of A Probable 6-Phosphogluconolactonase F 5e-21
1vl1_A232 Crystal Structure Of 6-Phosphogluconolactonase (Tm1 4e-18
1pbt_A244 The Crystal Structure Of Tm1154, Oxidoreductase, So 2e-17
2j0e_A266 Three Dimensional Structure And Catalytic Mechanism 2e-11
1y89_A238 Crystal Structure Of Devb Protein Length = 238 2e-11
3e7f_A265 Crystal Structure Of 6-Phosphogluconolactonase From 2e-11
3ch7_A266 Crystal Structure Of 6-Phosphogluconolactonase From 1e-08
3css_A267 Crystal Structure Of 6-Phosphogluconolactonase From 1e-08
3lhi_A232 Crystal Structure Of Putative 6- Phosphogluconolact 3e-06
1ne7_A289 Human Glucosamine-6-Phosphate Deaminase Isomerase A 4e-04
3nwp_A233 Crystal Structure Of A 6-Phosphogluconolactonase (S 6e-04
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Mycobacterium Tuberculosis Length = 268 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Query: 2   VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATS 61
           VP+D D+ N K A    L+ V I +  V+ +  +    G   D       L    +LA S
Sbjct: 96  VPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAA----LAYEQVLAAS 151
Query: 62  AATG--FPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPV 119
           AA G   P FD+ LLGMGP+GHI SLFP  P + E+ + V  + DSPKPPP RIT T P 
Sbjct: 152 AAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPA 211
Query: 120 INSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
           I  S  + ++V G GK+ AV  A+G       +P   A+  +   W LD+DA +KL
Sbjct: 212 IQRSREVWLLVSGPGKADAVAAAIGGADPVS-VPAAGAVGRQNTLWLLDRDAAAKL 266
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Mycobacterium Smegmatis, Apo Form Length = 248 Back     alignment and structure
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From Mycobacterium Abscessus Length = 251 Back     alignment and structure
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154) From Thermotoga Maritima At 1.70a Resolution Length = 232 Back     alignment and structure
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB Family From Thermotoga Maritima Length = 244 Back     alignment and structure
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6- Phosphogluconolactonase From Trypanosoma Brucei Length = 266 Back     alignment and structure
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein Length = 238 Back     alignment and structure
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid Length = 265 Back     alignment and structure
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Leishmania Braziliensis Length = 266 Back     alignment and structure
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Leishmania Guyanensis Length = 267 Back     alignment and structure
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6- Phosphogluconolactonase(Yp_207848.1) From Neisseria Gonorrhoeae Fa 1090 At 1.33 A Resolution Length = 232 Back     alignment and structure
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75 A Resolution Complexed With N-Acetyl-Glucosamine-6-Phosphate And 2-Deoxy-2-Amino-Glucitol-6-Phosphate Length = 289 Back     alignment and structure
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase (Sbal_2240) From Shewanella Baltica Os155 At 1.40 A Resolution Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query175
3oc6_A248 6-phosphogluconolactonase; ssgcid, structural geno 6e-70
3tx2_A251 Probable 6-phosphogluconolactonase; ssgcid, hydrol 2e-69
3ico_A268 6PGL, 6-phosphogluconolactonase; ssgcid, infectiou 5e-68
1y89_A238 DEVB protein; structural genomics, protein structu 6e-68
1vl1_A232 6PGL, 6-phosphogluconolactonase; TM1154, structura 6e-66
3eb9_A266 6-phosphogluconolactonase; catalytic mechanism, pe 1e-60
3lhi_A232 Putative 6-phosphogluconolactonase; structural gen 5e-55
3nwp_A233 6-phosphogluconolactonase; structural genomics, jo 4e-53
3css_A267 6-phosphogluconolactonase; structural genomics, me 9e-53
3lwd_A226 6-phosphogluconolactonase; structural genomics, JO 2e-50
3e15_A312 Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluc 8e-49
1fs5_A266 Glucosamine-6-phosphate deaminase; allosteric enzy 2e-13
1ne7_A289 Glucosamine-6-phosphate isomerase; V-type like all 1e-11
2bkx_A242 Glucosamine-6-phosphate deaminase; hydrolase, subs 6e-11
3hn6_A289 Glucosamine-6-phosphate deaminase; niaid, ssgcid, 1e-10
2ri0_A234 Glucosamine-6-phosphate deaminase; carbohydrate me 8e-09
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis} Length = 248 Back     alignment and structure
 Score =  211 bits (539), Expect = 6e-70
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 1   VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAIN-----DALSAEGAAEDYETCLKHLTKS 55
            VP+D D+ N K A +  L  + I   NV+A+           E AA  Y          
Sbjct: 79  FVPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYA--------- 129

Query: 56  NILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITF 115
            +L+ +  +  P FD+ LLGMG +GH+ SLFP    ++E E+ V  + DSPKPPP RIT 
Sbjct: 130 QLLSANFDSSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITL 189

Query: 116 TFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDKDATSKL 175
           T P + +S  + +VV G  K+ AV  A+G     D +P   A+  E   W +D+ A +KL
Sbjct: 190 TLPAVQNSREVWLVVSGEAKADAVAAAVGGADPVD-IPAAGAVGRERTVWLVDEAAAAKL 248
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus} Length = 251 Back     alignment and structure
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} Length = 268 Back     alignment and structure
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} Length = 238 Back     alignment and structure
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Length = 232 Back     alignment and structure
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* Length = 266 Back     alignment and structure
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Length = 232 Back     alignment and structure
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica} Length = 233 Back     alignment and structure
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A Length = 267 Back     alignment and structure
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens} Length = 226 Back     alignment and structure
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} Length = 312 Back     alignment and structure
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Length = 266 Back     alignment and structure
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Length = 289 Back     alignment and structure
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* Length = 242 Back     alignment and structure
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi} Length = 289 Back     alignment and structure
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
3tx2_A251 Probable 6-phosphogluconolactonase; ssgcid, hydrol 100.0
3oc6_A248 6-phosphogluconolactonase; ssgcid, structural geno 100.0
3ico_A268 6PGL, 6-phosphogluconolactonase; ssgcid, infectiou 100.0
3eb9_A266 6-phosphogluconolactonase; catalytic mechanism, pe 100.0
3hn6_A289 Glucosamine-6-phosphate deaminase; niaid, ssgcid, 100.0
3css_A267 6-phosphogluconolactonase; structural genomics, me 100.0
1y89_A238 DEVB protein; structural genomics, protein structu 100.0
3lwd_A226 6-phosphogluconolactonase; structural genomics, JO 100.0
1vl1_A232 6PGL, 6-phosphogluconolactonase; TM1154, structura 100.0
3nwp_A233 6-phosphogluconolactonase; structural genomics, jo 100.0
3lhi_A232 Putative 6-phosphogluconolactonase; structural gen 100.0
3e15_A312 Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluc 100.0
1ne7_A289 Glucosamine-6-phosphate isomerase; V-type like all 100.0
2bkx_A242 Glucosamine-6-phosphate deaminase; hydrolase, subs 100.0
1fs5_A266 Glucosamine-6-phosphate deaminase; allosteric enzy 100.0
2ri0_A234 Glucosamine-6-phosphate deaminase; carbohydrate me 100.0
2r5f_A264 Transcriptional regulator, putative; transcription 99.68
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 99.65
2gnp_A266 Transcriptional regulator; structural genomics, MC 99.59
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 99.58
2o0m_A345 Transcriptional regulator, SORC family; structural 99.54
3nze_A267 Putative transcriptional regulator, sugar-binding; 99.0
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 98.55
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 98.39
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus} Back     alignment and structure
Probab=100.00  E-value=1.2e-51  Score=333.96  Aligned_cols=167  Identities=38%  Similarity=0.612  Sum_probs=151.9

Q ss_pred             CCCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEc
Q 048634            1 VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-----LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLG   75 (175)
Q Consensus         1 ~Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-----~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLG   75 (175)
                      |||++|++||+++++++||++++|+++|+|++++.     .+++++|++|++.|++++..+       .+.|+||++|||
T Consensus        79 ~vp~~~~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~-------~~~~~~Dl~lLG  151 (251)
T 3tx2_A           79 YVPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQLLAANAEPG-------QDCPAFDVHLLG  151 (251)
T ss_dssp             SSCTTCTTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSSCTTCHHHHHHHHHHHHHHTSCTT-------CSSCCCSEEEEC
T ss_pred             cCCCCChHHHHHHHHHHhhccCCCCHHHEEECCCcccccCCCHHHHHHHHHHHHHhhhccc-------cCCCCCCEEEEC
Confidence            69999999999999999999999999999999875     489999999999999865421       135789999999


Q ss_pred             ccccCcccccCCCCCCCccCCceEEeccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCCCcccccc
Q 048634           76 MGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ  155 (175)
Q Consensus        76 mG~DGH~AslfP~~~~l~~~~~~v~~~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~~~~~Pas  155 (175)
                      ||+||||||||||++.+.++.++++.+.++|++|++|||||++.|++||+|+|+++|++|+++++++++++.+.. +|+|
T Consensus       152 ~G~DGH~as~fPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~~~~-~Pas  230 (251)
T 3tx2_A          152 MGGEGHINSLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADPVD-VPAA  230 (251)
T ss_dssp             CCTTCCBTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCCTTT-SGGG
T ss_pred             CCCCCceEEcCCcChhhccCcceEEEecCCCCCCCcEEEECHHHHHhcCeEEEEEeCHHHHHHHHHHHhCCCCCC-CChH
Confidence            999999999999998877776677667788999999999999999999999999999999999999999988765 9999


Q ss_pred             ccccCCeEEEEechhhhcCC
Q 048634          156 MALAEEEFTWFLDKDATSKL  175 (175)
Q Consensus       156 ~l~~~~~~~~~~D~~Aa~~l  175 (175)
                      .|+.|++++||+|++||++|
T Consensus       231 ~l~~h~~~~~~~D~~Aa~~L  250 (251)
T 3tx2_A          231 GAKGIERTVWLLDEAAASQL  250 (251)
T ss_dssp             GCCCSSEEEEEEETTTTTTC
T ss_pred             HhccCCCEEEEEeHHHHhhc
Confidence            99999999999999999986
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis} Back     alignment and structure
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} Back     alignment and structure
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* Back     alignment and structure
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi} Back     alignment and structure
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A Back     alignment and structure
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens} Back     alignment and structure
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Back     alignment and structure
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica} Back     alignment and structure
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Back     alignment and structure
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} Back     alignment and structure
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Back     alignment and structure
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* Back     alignment and structure
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Back     alignment and structure
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 175
d1vl1a_218 c.124.1.1 (A:) 6-phosphogluconolactonase {Thermoto 3e-27
d1ne7a_281 c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/i 1e-25
d1fsfa_266 c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/i 4e-23
d2o0ma1247 c.124.1.8 (A:95-341) Transcriptional regulator EF1 6e-09
d2okga1250 c.124.1.8 (A:89-338) Central glycolytic gene regul 6e-06
d3efba1255 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Sh 0.002
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: NagB-like
domain: 6-phosphogluconolactonase
species: Thermotoga maritima [TaxId: 2336]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 19/169 (11%)

Query: 1   VVPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILAT 60
            VP D D SN++   +   S+  I +GNV+ ++ +L  E A E YE  ++          
Sbjct: 69  YVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRS--------- 119

Query: 61  SAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVI 120
                  +FDL +LGMGPDGH+AS+F      K+N   VTF   S  P   R+T TF  +
Sbjct: 120 ----ATDQFDLAILGMGPDGHVASIFDLETGNKDN--LVTFTDPSGDPKVPRVTLTFRAL 173

Query: 121 NSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMALAEEEFTWFLDK 169
           N+S Y+  ++ G  K + +   L +      LP      +E+  WF+ K
Sbjct: 174 NTSLYVLFLIRGKEKINRLTEILKDTP----LPAYFVRGKEKTVWFVGK 218
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Length = 281 Back     information, alignment and structure
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Length = 266 Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Length = 247 Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Length = 250 Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query175
d1ne7a_281 Glucosamine 6-phosphate deaminase/isomerase NagB { 100.0
d1vl1a_218 6-phosphogluconolactonase {Thermotoga maritima [Ta 100.0
d1fsfa_266 Glucosamine 6-phosphate deaminase/isomerase NagB { 100.0
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 99.69
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 99.35
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 99.23
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 98.8
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 98.33
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: NagB-like
domain: Glucosamine 6-phosphate deaminase/isomerase NagB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-46  Score=304.88  Aligned_cols=158  Identities=23%  Similarity=0.379  Sum_probs=142.0

Q ss_pred             CCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhccchhhccccCCCCcccEEEEcccccC
Q 048634            2 VPKDHDDSNYKLAYDGFLSQVPITTGNVYAINDA-LSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDG   80 (175)
Q Consensus         2 Vp~~~~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~-~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~Dl~lLGmG~DG   80 (175)
                      +|.+|++||+++++++||++++++++|+|++++. .+++++|++|++.|++.              ++||+++||||+||
T Consensus        77 ~~~d~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~i~~~--------------~~~Dl~lLGiG~DG  142 (281)
T d1ne7a_          77 LPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAA--------------GGIELFVGGIGPDG  142 (281)
T ss_dssp             SCTTSTTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHT--------------TSCSEEEECCCTTC
T ss_pred             CCCcchhhHHHHHHHHHhhhcccchhheecccccCCCHHHHHHHHHHHHHhC--------------CCccEEEeccCccc
Confidence            5899999999999999999999999999999987 57899999999999874              68999999999999


Q ss_pred             cccccCCCCCCCccCCceEEe------------ccCCCCCCCceEEeChHHHhccCceEEEEcCCCHHHHHHHHHcCCCC
Q 048634           81 HIASLFPGHPLLKENEKWVTF------------IKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQN  148 (175)
Q Consensus        81 H~AslfP~~~~l~~~~~~v~~------------~~~~~~~p~~riTlt~~~i~~ar~v~~lv~G~~K~~~l~~~l~~~~~  148 (175)
                      ||||||||++...+.. .+..            ..+.|++|++|||||++.|++||+|+|+++|++|+++|+++++++.+
T Consensus       143 H~AslfP~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~P~~riTltl~~i~~Ak~iill~~G~~Ka~~v~~~l~~~~~  221 (281)
T d1ne7a_         143 HIAFNEPGSSLVSRTR-VKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVN  221 (281)
T ss_dssp             CSTTCCTTCCTTCCSE-EEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCC
T ss_pred             eeeeccCCccccccce-eeeechhhHHHHHHhcccCcCCCCceeeecCHHHHhhcceEEEEEeCccHHHHHHHHHcCCCC
Confidence            9999999998765532 2211            13468899999999999999999999999999999999999999887


Q ss_pred             CccccccccccCCeEEEEechhhhcCC
Q 048634          149 SDLLPVQMALAEEEFTWFLDKDATSKL  175 (175)
Q Consensus       149 ~~~~Pas~l~~~~~~~~~~D~~Aa~~l  175 (175)
                      .. +|||+|+.|++++||+|++||++|
T Consensus       222 ~~-~PAS~l~~h~~~~~~~D~~AAs~L  247 (281)
T d1ne7a_         222 HM-WTVSAFQQHPRTVFVCDEDATLEL  247 (281)
T ss_dssp             TT-SGGGGGGGCSSEEEEEEGGGGTTS
T ss_pred             Cc-cChHHHccCCCEEEEEeHHHHcCC
Confidence            65 999999999999999999999986
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure