Prediction of Enzyme Commission (EC) Number
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 121
PTZ00018 136
PTZ00018, PTZ00018, histone H3; Provisional
7e-52 PLN00121 136
PLN00121, PLN00121, histone H3; Provisional
9e-46 smart00428 105
smart00428, H3, Histone H3
1e-35 pfam00125 75
pfam00125, Histone, Core histone H2A/H2B/H3/H4
6e-25 PLN00160 97
PLN00160, PLN00160, histone H3; Provisional
5e-23 PLN00161 135
PLN00161, PLN00161, histone H3; Provisional
3e-22 COG2036 91
COG2036, HHT1, Histones H3 and H4 [Chromatin struc
8e-17
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional
Back Hide alignment and domain information
Score = 159 bits (404), Expect = 7e-52
Identities = 93/136 (68%), Positives = 101/136 (74%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLA+KAARK G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RFQSSAV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGER+
Sbjct: 121 MPKDIQLARRIRGERS 136
>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional
Back Show alignment and domain information
Score = 144 bits (364), Expect = 9e-46
Identities = 95/136 (69%), Positives = 102/136 (75%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RFQSSAV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gnl|CDD|128705 smart00428, H3, Histone H3
Back Show alignment and domain information
Score = 117 bits (296), Expect = 1e-35
Identities = 69/115 (60%), Positives = 76/115 (66%), Gaps = 13/115 (11%)
Query: 9 RKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLERDLKRLVREIAQDFKT-- 66
K+ + Q+A + RK + S PFQ RLVREIAQ F T
Sbjct: 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQ-----------RLVREIAQKFTTGV 50
Query: 67 DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121
D+RFQSSA+ ALQEAAEAYLVGLFEDTNL AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 51 DLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGERL 105
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4
Back Show alignment and domain information
Score = 89.5 bits (223), Expect = 6e-25
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114
R+VRE+ + F ++R S A ALQEA E L + ED L A HAKR TI P+DIQLA
Sbjct: 13 RVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKRKTITPRDIQLAV 72
Query: 115 RIR 117
R+
Sbjct: 73 RLD 75
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional
Back Show alignment and domain information
Score = 85.5 bits (211), Expect = 5e-23
Identities = 53/86 (61%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 37 EETTPFQAGNSGLERDL--KRLVREIAQDF-KTDMRFQSSAVAALQEAAEAYLVGLFEDT 93
+E +Q L R L RLVREI + + R+Q SA+ ALQEAAEA+LVGLFED+
Sbjct: 9 KEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDS 68
Query: 94 NLCAIHAKRVTIMPKDIQLARRIRGE 119
NLCAIH KRVTIMPKD+QLARRIRG+
Sbjct: 69 NLCAIHGKRVTIMPKDMQLARRIRGQ 94
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional
Back Show alignment and domain information
Score = 84.7 bits (209), Expect = 3e-22
Identities = 59/128 (46%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 1 MARMKQTARKSTGGKAPRKQLAT-------KAARKVRSSNGRSEETTPFQAGNSGLERDL 53
MAR Q ++ GK P+K+ + K + R E +Q L R L
Sbjct: 1 MARRLQ-GKRFRKGKKPQKEASGVTRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKL 59
Query: 54 K--RLVREIAQDFKTD-MRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 110
RLVREI+ + + R+ + A+ ALQEA E +LV LFED NLCAIHAKRVTIMPKD+
Sbjct: 60 PFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDM 119
Query: 111 QLARRIRG 118
QLARRIRG
Sbjct: 120 QLARRIRG 127
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Score = 69.3 bits (170), Expect = 8e-17
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 112
++R++R+ + R SSA+ LQEA E YL + ED A HAKR T+ +DI+L
Sbjct: 25 VRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKL 79
Query: 113 ARRIRGER 120
A + G R
Sbjct: 80 ALKRLGRR 87
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
121
PTZ00018 136
histone H3; Provisional
100.0 PLN00121 136
histone H3; Provisional
100.0 PLN00161 135
histone H3; Provisional
100.0 KOG1745 137
consensus Histones H3 and H4 [Chromatin structure
100.0 smart00428 105
H3 Histone H3.
100.0 PLN00160 97
histone H3; Provisional
100.0 COG2036 91
HHT1 Histones H3 and H4 [Chromatin structure and d
99.81 PF00125 75
Histone: Core histone H2A/H2B/H3/H4 histone h2a si
99.79 cd07981 72
TAF12 TATA Binding Protein (TBP) Associated Factor
99.3 PLN00158 116
histone H2B; Provisional
98.75 PTZ00463 117
histone H2B; Provisional
98.62 smart00427 89
H2B Histone H2B.
98.56 smart00803 65
TAF TATA box binding protein associated factor. TA
98.41 PF00808 65
CBFD_NFYB_HMF: Histone-like transcription factor (
98.39 cd07979 117
TAF9 TATA Binding Protein (TBP) Associated Factor
98.35 KOG1744 127
consensus Histone H2B [Chromatin structure and dyn
98.24 cd00076 85
H4 Histone H4, one of the four histones, along wit
98.24 PLN00035 103
histone H4; Provisional
98.2 PTZ00015 102
histone H4; Provisional
98.08 PF15630 76
CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C
98.05 PF03847 68
TFIID_20kDa: Transcription initiation factor TFIID
97.7 smart00576 77
BTP Bromodomain transcription factors and PHD doma
97.67 smart00417 74
H4 Histone H4.
97.61 PF02291 129
TFIID-31kDa: Transcription initiation factor IID,
97.53 PF02969 66
TAF: TATA box binding protein associated factor (T
97.51 cd08050 343
TAF6 TATA Binding Protein (TBP) Associated Factor
97.46 PF15511 414
CENP-T: Centromere kinetochore component CENP-T; P
97.43 KOG0870 172
consensus DNA polymerase epsilon, subunit D [Trans
97.34 KOG1142 258
consensus Transcription initiation factor TFIID, s
96.62 cd00074 115
H2A Histone 2A; H2A is a subunit of the nucleosome
96.52 KOG3334 148
consensus Transcription initiation factor TFIID, s
95.69 PF07524 77
Bromo_TP: Bromodomain associated; InterPro: IPR006
95.04 KOG3467 103
consensus Histone H4 [Chromatin structure and dyna
89.68 COG5262 132
HTA1 Histone H2A [Chromatin structure and dynamics
88.27 PF02269 93
TFIID-18kDa: Transcription initiation factor IID,
87.75 KOG0869 168
consensus CCAAT-binding factor, subunit A (HAP3) [
85.91 KOG2549 576
consensus Transcription initiation factor TFIID, s
82.03 cd08045 212
TAF4 TATA Binding Protein (TBP) Associated Factor
81.58 PF05236 264
TAF4: Transcription initiation factor TFIID compon
81.44
>PTZ00018 histone H3; Provisional
Back Hide alignment and domain information
Probab=100.00 E-value=3.9e-51 Score=300.64 Aligned_cols=120 Identities=78% Similarity=1.073 Sum_probs=115.6
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
|||||+++++++|+++|++++++++++++.+.+++.++++||+|||+||+ + ||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999998888888888889999999999999998 3 99999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 ~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||||++||||+.
T Consensus 81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999985
>PLN00121 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=4.9e-51 Score=300.11 Aligned_cols=120 Identities=79% Similarity=1.083 Sum_probs=115.9
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
|||||+++++++|+++|++++++++.+++.+..++.++++||+|||+||+ + ||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhC
Confidence 99999999999999999999999888888888889999999999999998 3 99999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 ~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+|+++|||+.
T Consensus 81 ~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PLN00121 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999986
>PLN00161 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.8e-49 Score=291.10 Aligned_cols=113 Identities=49% Similarity=0.741 Sum_probs=104.3
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
||||||+ +++++||.|+|.+..+ ...+++++||||+|||+||+ + ||+||||||++++.
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~ 73 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcC
Confidence 9999999 7888999998887553 25577899999999999999 3 99999999999996
Q ss_pred -ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 -TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 -~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+||++|||+.
T Consensus 74 ~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~ 129 (135)
T PLN00161 74 REPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPI 129 (135)
T ss_pred CCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccc
Confidence 5899999999999999999999999999999999999999999999999999974
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=100.00 E-value=1e-48 Score=287.41 Aligned_cols=121 Identities=79% Similarity=1.087 Sum_probs=114.4
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhc-cCCCCCCCCcccCCCCCCCcC--------------C-chHHHHHHHHHhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKV-RSSNGRSEETTPFQAGNSGLE--------------R-DLKRLVREIAQDF 64 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks-~p~~~~~kk~~r~rpgt~alr--------------r-pF~RLVreI~~~~ 64 (121)
|+|+++++++++++++|++..+.++.++. .|..+.+++++||+||+++|+ + ||+||||||+|+|
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f 80 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDF 80 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcc
Confidence 89999999999999999999999888776 455678899999999999998 3 9999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccCC
Q 048641 65 KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121 (121)
Q Consensus 65 ~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~~ 121 (121)
.+|+|||+.||.|||||+|+|||+||||+|+||+|||||||||+|||||++|+|++.
T Consensus 81 ~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~~~ 137 (137)
T KOG1745|consen 81 KTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137 (137)
T ss_pred cccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999863
>smart00428 H3 Histone H3
Back Show alignment and domain information
Probab=100.00 E-value=8.6e-41 Score=236.80 Aligned_cols=87 Identities=74% Similarity=1.047 Sum_probs=83.2
Q ss_pred CCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHhhhhhHh
Q 048641 34 GRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFKT--DMRFQSSAVAALQEAAEAYLVGLFEDTNLC 96 (121)
Q Consensus 34 ~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~~--~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~ 96 (121)
+++++||||+|||+||+ + ||+||||||++++.+ ++|||++|++|||||+|+|||++|||+|+|
T Consensus 1 ~~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~ 80 (105)
T smart00428 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLL 80 (105)
T ss_pred CCCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999 3 999999999999987 999999999999999999999999999999
Q ss_pred hhhcCccccCcccHHHHHHHhccC
Q 048641 97 AIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 97 a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|+||||||||++||+||.+|||+.
T Consensus 81 a~HAkRvTl~~kDi~La~rir~~~ 104 (105)
T smart00428 81 AIHAKRVTIMPKDIQLARRIRGER 104 (105)
T ss_pred HHHhCCccCcHhhHHHHHHHhccC
Confidence 999999999999999999999985
>PLN00160 histone H3; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=3.3e-40 Score=230.93 Aligned_cols=84 Identities=62% Similarity=0.880 Sum_probs=75.8
Q ss_pred CCcccCCCCCCCcCC--chHHHHHHHHHhhh-ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHH
Q 048641 37 EETTPFQAGNSGLER--DLKRLVREIAQDFK-TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113 (121)
Q Consensus 37 kk~~r~rpgt~alrr--pF~RLVreI~~~~~-~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la 113 (121)
+..++|+.+|..|.+ ||+||||||++++. +++|||++||+|||||+|+|||++|||+|+||+||||||||++||||+
T Consensus 9 rEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~ 88 (97)
T PLN00160 9 KEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLA 88 (97)
T ss_pred HHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHH
Confidence 455666666665555 99999999999996 569999999999999999999999999999999999999999999999
Q ss_pred HHHhccC
Q 048641 114 RRIRGER 120 (121)
Q Consensus 114 ~rirg~~ 120 (121)
++|||+.
T Consensus 89 ~rirg~~ 95 (97)
T PLN00160 89 RRIRGQT 95 (97)
T ss_pred HHhhccc
Confidence 9999974
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=99.81 E-value=2.1e-20 Score=129.68 Aligned_cols=83 Identities=36% Similarity=0.436 Sum_probs=75.7
Q ss_pred CCCCCCcccCCCCCCCcCC--chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccH
Q 048641 33 NGRSEETTPFQAGNSGLER--DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 110 (121)
Q Consensus 33 ~~~~kk~~r~rpgt~alrr--pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi 110 (121)
+.+.+..++|...+..+.+ ||+|++|+...+ ||+.+|+++||++.|.|++.++++++.||.|+||+||+++||
T Consensus 3 ~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI 77 (91)
T COG2036 3 AVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDI 77 (91)
T ss_pred cchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 4556778888888877776 999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 048641 111 QLARRIRGER 120 (121)
Q Consensus 111 ~la~rirg~~ 120 (121)
+|+.+.+|..
T Consensus 78 ~la~~~~~~~ 87 (91)
T COG2036 78 KLALKRLGRR 87 (91)
T ss_pred HHHHHHhccc
Confidence 9999998853
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]
Back Show alignment and domain information
Probab=99.79 E-value=2e-19 Score=117.95 Aligned_cols=66 Identities=45% Similarity=0.613 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
||.|+++||..++..++||+++|+.+||+++|+|++.+||+|+.||.|+||+||+++|||+|.+++
T Consensus 10 ~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 10 PFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred EEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 999999999999888899999999999999999999999999999999999999999999999985
Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=99.30 E-value=6.7e-12 Score=83.09 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.|.+.++.+..+++.+|.++||+.+|+|+.++++++..||.|++|.||.++||+|+..
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 44555666677999999999999999999999999999999999999999999999864
The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
>PLN00158 histone H2B; Provisional
Back Show alignment and domain information
Probab=98.75 E-value=4.1e-08 Score=70.88 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..|+.++++|+.+++.|+..|.....|++..+-.++..++.+.||.||.++|||.+.||.
T Consensus 28 sy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 28 TYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
>PTZ00463 histone H2B; Provisional
Back Show alignment and domain information
Probab=98.62 E-value=1.6e-07 Score=67.94 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=64.6
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..++.++++|+.+++.|+..|.....|++..+-.++..++.+.||.||.++|||.+.||.
T Consensus 29 sy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 29 SYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999999999999999999986
>smart00427 H2B Histone H2B
Back Show alignment and domain information
Probab=98.56 E-value=2.6e-07 Score=64.02 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=63.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..|+.++++|+.+++.|+..|.....|++..+-.++..++.+.||-||.++|||.|.||.
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999985
>smart00803 TAF TATA box binding protein associated factor
Back Show alignment and domain information
Probab=98.41 E-value=5.5e-07 Score=58.73 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 56 LVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 56 LVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-|+.|+....- -|.+.++...|.+..|.++-.+.+++..++.|+||-||++.||.+|.+
T Consensus 7 ~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 7 TIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 35666666543 389999999999999999999999999999999999999999998863
TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin
Back Show alignment and domain information
Probab=98.39 E-value=9.3e-07 Score=56.65 Aligned_cols=58 Identities=33% Similarity=0.342 Sum_probs=50.2
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
|+.|++....+.+++.+|+.+|+.++|.|+..|-.+++..+-+.+|-||++.||..|.
T Consensus 8 vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 8 VKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5667776656678999999999999999999999999999999999999999998763
The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=98.35 E-value=1.5e-06 Score=62.55 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..++|..|+.+.. ..+++..++..|-|.++.|..++..|+...|-||+|.||...||.||...+++
T Consensus 3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3578888888763 45999999999999999999999999999999999999999999999998875
The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=98.24 E-value=2.7e-06 Score=62.33 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|+.++.++++|+.+.+.|+.++.....+++..+..+++.+|.+.||-||..+|||+|.+|.
T Consensus 38 ~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 38 SYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred ceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Back Show alignment and domain information
Probab=98.24 E-value=2.3e-06 Score=58.80 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|-.||+|.- .--|++.++.+.+.++.|.||..+..|+...+-||+|.||+..||.++.+-.|..
T Consensus 18 ~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 18 AIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 555666532 3469999999999999999999999999999999999999999999999988863
>PLN00035 histone H4; Provisional
Back Show alignment and domain information
Probab=98.20 E-value=2.9e-06 Score=60.27 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|-.||.|.- .--|++.+|.+.|.++.|.||..+..|+...+-||+|.||+..||.+|.+-.|.
T Consensus 34 ~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 34 AIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 666776543 246999999999999999999999999999999999999999999999988775
>PTZ00015 histone H4; Provisional
Back Show alignment and domain information
Probab=98.08 E-value=6.9e-06 Score=58.20 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=55.7
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|-.||.|.- .--|++.++.+.+.+..|.||..+..|+..+|-||+|.||+..||.+|.+-.|.
T Consensus 35 ~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 35 AIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred HHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 666666532 346999999999999999999999999999999999999999999999988775
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C
Back Show alignment and domain information
Probab=98.05 E-value=7.7e-06 Score=55.05 Aligned_cols=61 Identities=30% Similarity=0.298 Sum_probs=51.1
Q ss_pred HHHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 55 RLVREIAQDF--KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 55 RLVreI~~~~--~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
--|-+|+++. ..++.|+.+.+.||-|.+=.++..+-.|--..|.||||.||++.|+.|..|
T Consensus 9 ~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 9 YTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 3466677765 367899999999999999999999999999999999999999999999754
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []
Back Show alignment and domain information
Probab=97.70 E-value=0.00012 Score=48.27 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=46.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.|+++++.++..+..++.+.|.+.|++|+.+..+.+-.+|.|-+--||..+|+|+...
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 34555556788999999999999999999999999999999999999999999999854
; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins
Back Show alignment and domain information
Probab=97.67 E-value=0.00023 Score=47.24 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 69 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 69 rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+++.+|++.|.+..|.|+..|-+.+...+-|++|.+..+.|+.++..-.|.
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 889999999999999999999999999999999999999999999876554
subdomain of archael histone-like transcription factors
>smart00417 H4 Histone H4
Back Show alignment and domain information
Probab=97.61 E-value=5.1e-05 Score=50.92 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 112 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~l 112 (121)
|..||.|. . .--|++.++.+.|.++.|.||..+..|+..++-||+|.||+..|+..
T Consensus 18 ~IrRLaRr----~-GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 18 AIRRLARR----G-GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHHHHHHH----c-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 55555542 2 34699999999999999999999999999999999999999999853
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []
Back Show alignment and domain information
Probab=97.53 E-value=0.00029 Score=51.70 Aligned_cols=65 Identities=29% Similarity=0.386 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
.++|..|+.+..- ..|+...+.-|-|.+-.|..++++||...|-||+|.+|...|++||-..+.+
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~ 79 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD 79 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence 5788999988752 3589999999999999999999999999999999999999999999887643
TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex
Back Show alignment and domain information
Probab=97.51 E-value=0.00036 Score=45.85 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
.-|+-|++.+.- -..+.++..+|.+-+|.-|-.+.+++..++.|+||-+|++.||..|.|
T Consensus 7 esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 7 ESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 346677776542 247889999999999999999999999999999999999999999865
TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=97.46 E-value=0.00034 Score=58.03 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..|+.|++... --+...+|..+|-+-+|.++-.+.++|..++.|+||.||+..||.+|.+.++.
T Consensus 3 ~~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~ 66 (343)
T cd08050 3 ESIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV 66 (343)
T ss_pred hHHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC
Confidence 45778887663 23889999999999999999999999999999999999999999999999864
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T
Back Show alignment and domain information
Probab=97.43 E-value=0.00021 Score=60.81 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhh-----ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCccc
Q 048641 54 KRLVREIAQDFK-----TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 109 (121)
Q Consensus 54 ~RLVreI~~~~~-----~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kD 109 (121)
+-+|+.+++.|- ...++..+||.||..|+|-|+-+|-+|-.-.|.||+|.||...|
T Consensus 354 ~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 354 PGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred ccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 345666666662 56899999999999999999999999999999999999998776
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Back Show alignment and domain information
Probab=97.34 E-value=0.00039 Score=53.17 Aligned_cols=61 Identities=28% Similarity=0.326 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-.|||+|++++. ++-++.+|+.||+++|--|+.-|.--++-.|.-.+|.||++.|+-=++.
T Consensus 16 I~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 16 ITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 458999999876 6899999999999999999999999999999999999999999876654
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Back Show alignment and domain information
Probab=96.62 E-value=0.0023 Score=51.88 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
-+.|.+.|.++++..+-.+..++-+.|.|.|++|+.++-.-+-.+|.|-|--||.++||+|..
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhL 217 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHL 217 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeee
Confidence 455666666666677788899999999999999999999999999999999999999999974
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome
Back Show alignment and domain information
Probab=96.52 E-value=0.014 Score=42.08 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|.-|-+ .+-....|...+|...|-..-|.+...++|-+.-.+.|+++.+|+|+||+||.+
T Consensus 22 PV~ri~R~L-k~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 22 PVGRIHRYL-KKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred cHHHHHHHH-HcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 444444333 222233799999999999999999999999999999999999999999999964
The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Back Show alignment and domain information
Probab=95.69 E-value=0.044 Score=41.21 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
++|-.|+.++. ---|....+.-|=|.+=.|.+.+++||...+-||+.-||...|++||...+++.
T Consensus 17 ~~i~~iL~s~G-I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~ 81 (148)
T KOG3334|consen 17 RVIASILKSLG-IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDH 81 (148)
T ss_pred HHHHHHHHHcC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhcc
Confidence 56666666553 125677889999999999999999999999999999999999999999888753
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)
Back Show alignment and domain information
Probab=95.04 E-value=0.066 Score=35.06 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=48.2
Q ss_pred cc-cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 67 DM-RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 67 ~~-rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+| .++.+||+.|-+.++.||..+...+...+-|+.|-...+.|+.++..=.|.
T Consensus 20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 44 688999999999999999999999999999999999999999998765553
The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=89.68 E-value=0.69 Score=32.39 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 69 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 69 rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|+..-..+-...++..||.+...++..-+-||||.||+.-|+--+..-.|.
T Consensus 46 Ri~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~ 96 (103)
T KOG3467|consen 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc
Confidence 455555566778888999999999999999999999999999877665443
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=88.27 E-value=0.76 Score=33.73 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|..| |+.++..-...+|+.+.|...|--..|...-.++|-+.-.|.-.|-..|||+-+||| |||+
T Consensus 28 pvgr-vkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlA--IrnD 92 (132)
T COG5262 28 PVGR-VKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLA--IRND 92 (132)
T ss_pred cHHH-HHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHH--hcCc
Confidence 6665 455666445678999999999998888888899999999999999999999999998 5554
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)
Back Show alignment and domain information
Probab=87.75 E-value=0.42 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|++++--|...-.=..+.+..|.+..-.|++.+...|..+|.+.++-.|...|+-.+.|
T Consensus 7 I~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 7 IRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp CHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 44555555544455678889999999999999999999999999999999999988754
Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Back Show alignment and domain information
Probab=85.91 E-value=2.7 Score=32.21 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=52.3
Q ss_pred chHHHHHHHHHh-hhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 52 DLKRLVREIAQD-FKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 52 pF~RLVreI~~~-~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|-.-++| |+.. +..+-.+..+|-+.+||.+-.|+-=+-.+|+--..--||.||+-.||..|+--.|
T Consensus 34 PIANV~R-IMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG 100 (168)
T KOG0869|consen 34 PIANVSR-IMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG 100 (168)
T ss_pred cHHHHHH-HHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC
Confidence 6665544 4443 4467899999999999999998887777777666778999999999999987665
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Back Show alignment and domain information
Probab=82.03 E-value=3.7 Score=36.91 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
..-|+-+++... --.+..+|..+|-+=.|.-+-.+.+|+..++.|+||-+++..|+.-|.|.+.
T Consensus 14 ~Es~k~vAEslG-i~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~n 77 (576)
T KOG2549|consen 14 KESVKVVAESLG-ITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLN 77 (576)
T ss_pred HHHHHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcc
Confidence 344555665543 2346789999999999999999999999999999999999999999988763
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Back Show alignment and domain information
Probab=81.58 E-value=4 Score=31.59 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=45.9
Q ss_pred CcCC-chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 048641 48 GLER-DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 101 (121)
Q Consensus 48 alrr-pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hak 101 (121)
.|.+ |++..+..|+.+..-. .+..+.+..|..|+|.||-+|.++.-.++-|-.
T Consensus 44 fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~ 97 (212)
T cd08045 44 FLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRV 97 (212)
T ss_pred ccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3335 9999999999976533 889999999999999999999999999999963
The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site
Back Show alignment and domain information
Probab=81.44 E-value=2 Score=34.23 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCCCcCC-chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCcc
Q 048641 45 GNSGLER-DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 103 (121)
Q Consensus 45 gt~alrr-pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRv 103 (121)
....|.. |++..+.+|+.... ...+..+.+..|--|+|.+|-+|.|++...+.|-...
T Consensus 40 ~~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~ 98 (264)
T PF05236_consen 40 EEPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDS 98 (264)
T ss_dssp ----S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344555 99999999997765 5678999999999999999999999999999995443
Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 121
d1tzyc_ 95
a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
4e-36 d1f1ea_ 151
a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy
1e-08 d1ku5a_ 66
a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc
1e-05 d1htaa_ 68
a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth
7e-05 d1n1ja_ 87
a.22.1.3 (A:) Nuclear transcription factor Y subun
2e-04 d1q9ca_ 172
a.22.1.3 (A:) Histone domain of Son of sevenless p
7e-04 d1n1jb_ 78
a.22.1.3 (B:) Nuclear transcription factor Y subun
0.002 d2huec1 82
a.22.1.1 (C:20-101) Histone H4 {African clawed fro
0.003 d1jfib_ 135
a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain
0.004
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95
Back Hide information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Score = 116 bits (293), Expect = 4e-36
Identities = 64/67 (95%), Positives = 66/67 (98%)
Query: 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114
RLVREIAQDFKTD+RFQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR
Sbjct: 29 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 88
Query: 115 RIRGERA 121
RIRGERA
Sbjct: 89 RIRGERA 95
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Score = 47.9 bits (114), Expect = 1e-08
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113
VR I + R S AV + L E A R T+ +D++ A
Sbjct: 85 VRRILKR-AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKA 140
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Score = 38.2 bits (89), Expect = 1e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 112
+ RL+R+ R A L E E Y + + + A HA R T+ +DI+L
Sbjct: 8 VDRLIRKAG-----AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKL 62
Query: 113 A 113
A
Sbjct: 63 A 63
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Score = 36.3 bits (84), Expect = 7e-05
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 112
+ R+++ R A AL + E + + A HA R TI +DI+L
Sbjct: 9 IGRIIKNAG-----AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIEL 63
Query: 113 A 113
A
Sbjct: 64 A 64
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (81), Expect = 2e-04
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113
R+++ + A +QE ++ + + + KR TI +DI A
Sbjct: 9 ARIMKNAIPQ---TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFA 65
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (81), Expect = 7e-04
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 68 MRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115
+ + E + + + + I +DI++A
Sbjct: 115 YKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC 162
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 32.5 bits (74), Expect = 0.002
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113
+++I + + + A +AA+ ++ L + KR T+ DI +A
Sbjct: 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 62
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 82
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Score = 32.0 bits (73), Expect = 0.003
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113
K +R +A+ R + + +L + D HAKR T+ D+ A
Sbjct: 12 KPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 70
Query: 114 RRIRGE 119
+ +G
Sbjct: 71 LKRQGR 76
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 135
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.0 bits (75), Expect = 0.004
Identities = 7/57 (12%), Positives = 25/57 (43%)
Query: 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113
+ ++ ++ ++R + A + ++ + + N +++ TI P+ + A
Sbjct: 10 INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 66
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 121
d1tzyc_ 95
Histone H3 {Chicken (Gallus gallus), erythrocytes
100.0 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
99.04 d1htaa_ 68
Archaeal histone {Archaeon Methanothermus fervidus
98.9 d1ku5a_ 66
Archaeal histone {Archaeon (Pyrococcus horikoshii)
98.82 d1tzyb_ 92
Histone H2B {Chicken (Gallus gallus), erythrocytes
98.77 d1f1ea_ 151
Archaeal histone {Archaeon Methanopyrus kandleri [
98.25 d2huec1 82
Histone H4 {African clawed frog (Xenopus laevis) [
98.23 d1n1ja_ 87
Nuclear transcription factor Y subunit beta (Nf-Yb
98.23 d1n1jb_ 78
Nuclear transcription factor Y subunit gamma (Nf-Y
98.06 d1jfia_ 66
Negative cofactor 2, NC2, alpha chain {Human (Homo
98.06 d1jfib_ 135
Negative cofactor 2, NC2, beta chain {Human (Homo
97.95 d2bykb1 89
Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax
97.89 d1tafa_ 68
TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta
97.42 d1tafb_ 70
TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta
97.39 d1q9ca_ 172
Histone domain of Son of sevenless protein {Human
97.38 d1h3ob_ 74
TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom
97.2 d2byka1 72
Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax
94.21 d1u35c1 106
macro-H2A.1, histone domain {Human (Homo sapiens)
93.57 d1tzya_ 106
Histone H2A {Chicken (Gallus gallus), erythrocytes
92.86 d1f66c_ 103
Histone H2A {Human (Homo sapiens), variant H2A.Z [
91.69 d1q9ca_ 172
Histone domain of Son of sevenless protein {Human
84.62
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=100.00 E-value=5.7e-41 Score=231.39 Aligned_cols=85 Identities=80% Similarity=1.095 Sum_probs=77.0
Q ss_pred CCcccCCCCCCCcCC--chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 37 EETTPFQAGNSGLER--DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 37 kk~~r~rpgt~alrr--pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
+..++|+.+|..|.+ ||+||||||++++++++|||++||+|||||+|+|||+||||+|+||+|+||||||++||+||+
T Consensus 9 rEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~Lar 88 (95)
T d1tzyc_ 9 REIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 88 (95)
T ss_dssp HHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHH
Confidence 344555555555556 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCC
Q 048641 115 RIRGERA 121 (121)
Q Consensus 115 rirg~~~ 121 (121)
+|||+++
T Consensus 89 rirG~r~ 95 (95)
T d1tzyc_ 89 RIRGERA 95 (95)
T ss_dssp HHHTCCC
T ss_pred HHhccCC
Confidence 9999974
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=99.04 E-value=1.2e-10 Score=83.70 Aligned_cols=60 Identities=23% Similarity=0.074 Sum_probs=52.7
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 56 LVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 56 LVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
.|+.|+++. ...|++++|+.+|++++|.|+..|+++++.+|.|+||.||+++||++|...
T Consensus 84 ~IkRi~k~~-g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~ 143 (151)
T d1f1ea_ 84 TVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 143 (151)
T ss_dssp HHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 344444433 567999999999999999999999999999999999999999999999875
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]
Probab=98.90 E-value=1.3e-09 Score=68.33 Aligned_cols=57 Identities=30% Similarity=0.285 Sum_probs=50.7
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 58 REIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 58 reI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.|++.. .+.+++.+|+.+|++++|.|+..|.++++.++.|+||.||++.|+..|.+
T Consensus 10 ~ri~k~~-~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk 66 (68)
T d1htaa_ 10 GRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 66 (68)
T ss_dssp HHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHHHC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 3444444 45689999999999999999999999999999999999999999999976
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]
Probab=98.82 E-value=2.8e-09 Score=66.58 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=51.6
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|+.|++... +.+++.+|..+|++++|.|+..|.++++.++.|++|.||.+.||..|.+
T Consensus 8 I~rI~k~~~-~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 8 VDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 65 (66)
T ss_dssp HHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHhCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 455666553 4699999999999999999999999999999999999999999998863
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=98.77 E-value=7.3e-09 Score=69.50 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=64.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..|+.++++|+.+++.|+..|+....+++..+-++|..++.+.||.||..+|||.|.+|.
T Consensus 4 sy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~ 69 (92)
T d1tzyb_ 4 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 69 (92)
T ss_dssp CCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999985
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.25 E-value=7.9e-07 Score=63.31 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=55.9
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 58 REIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 58 reI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..|+.+..++.|++.+|.+.|++..++|+..+-.+++.++-|++|-||+++||+.+.++.|.
T Consensus 8 ~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~ 69 (151)
T d1f1ea_ 8 ERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 69 (151)
T ss_dssp HHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 34445555788999999999999999999999999999999999999999999999998874
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=98.23 E-value=4.1e-07 Score=59.19 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..|+.|+.... --|++.++.+.|.+..|.||-.+..++..++-|++|.||+..||.+|++=.|+
T Consensus 13 ~~i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~ 76 (82)
T d2huec1 13 PAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76 (82)
T ss_dssp HHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred HHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCC
Confidence 34666666553 35999999999999999999999999999999999999999999999874444
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.6e-06 Score=56.27 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=54.5
Q ss_pred HHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 57 VREIAQDF-KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 57 VreI~~~~-~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|+.|+.+. ..+.+++.+|..++++++|.|+..|.++|+.++...+|.||.++||.-|..=.|
T Consensus 8 v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~ 70 (87)
T d1n1ja_ 8 VARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 70 (87)
T ss_dssp HHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC
Confidence 55666654 467899999999999999999999999999999999999999999998876544
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=2.9e-06 Score=53.83 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|+.|++.-....+++++|+.+++.|+|.|+..|.+.++.++...+|-||+++||..+..
T Consensus 6 VkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~ 64 (78)
T d1n1jb_ 6 IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 64 (78)
T ss_dssp HHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHh
Confidence 57888865556799999999999999999999999999999999999999999998854
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.4e-06 Score=54.05 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=48.8
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la 113 (121)
|+.|++.-...-+++.+|...|..|+|.|+..|.+.++..+...||.||+++||..|
T Consensus 8 Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a 64 (66)
T d1jfia_ 8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 64 (66)
T ss_dssp HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence 677888655556999999999999999999999999999999999999999999865
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=8.7e-06 Score=56.86 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|+.|+....++.+++.+|..+|++++|-|+..|...|+..+...+|-||++.||.-|..-.|
T Consensus 10 I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~ 71 (135)
T d1jfib_ 10 INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 71 (135)
T ss_dssp HHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcC
Confidence 34455554467899999999999999999999999999999999999999999998876554
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.89 E-value=1.4e-05 Score=52.00 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 57 VREIAQDF-KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 57 VreI~~~~-~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
|+.|+.+. ..+..++.+|+.+++.|+|-|+-.|.+.|+..+.-.+|-||+++|+.-|..-.
T Consensus 5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~ 66 (89)
T d2bykb1 5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 66 (89)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHC
Confidence 45666644 46789999999999999999999999999999999999999999998776543
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)42
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.42 E-value=0.00023 Score=44.63 Aligned_cols=63 Identities=22% Similarity=0.412 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.++|..|+.+.. -.-|+...+.-|=|.+=-|..++++||...+-||++.+|...|++||-..|
T Consensus 4 a~~i~~iL~~~G-V~~yeprV~~qlLef~yRYtt~VL~DA~vys~HA~k~~id~dDVkLAi~~r 66 (68)
T d1tafa_ 4 AQVIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence 478888888874 247889999999999999999999999999999999999999999997655
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.39 E-value=0.00015 Score=45.74 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=51.2
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 56 LVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 56 LVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
-|+.|++.+.- -....++...|-+=+|.-|-.+++++..|..|+||-+|++.||.-|.++
T Consensus 11 sik~iAeS~Gi-~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv 70 (70)
T d1tafb_ 11 SMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence 46777776641 2467899999999999999999999999999999999999999998764
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00012 Score=53.29 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=54.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
++.|+.|+.. ..|+.++|-..|-.+-|.+...++|.|.-.|.|+||.||+|+||++|.+
T Consensus 104 rv~rlLk~~~-----a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~ 162 (172)
T d1q9ca_ 104 KIHPLLKEVL-----GYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMC 162 (172)
T ss_dssp HHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred HHHHHHHhcc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHh
Confidence 7888888752 4699999999999999999999999999999999999999999999965
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0005 Score=43.65 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.||++| .++..+..++-+.|-+.|++|+.+..+.+-.+|.|-+--||.++|+||...
T Consensus 10 ~eLv~~i----dp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 67 (74)
T d1h3ob_ 10 QDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 67 (74)
T ss_dssp HHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 4555555 577899999999999999999999999999999999999999999999854
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.21 E-value=0.036 Score=33.99 Aligned_cols=47 Identities=4% Similarity=-0.014 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHhh-hhcCccccCcccHHHHHH
Q 048641 69 RFQSSAVAALQEAAEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 69 rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a-~hakRvTi~~kDi~la~r 115 (121)
....+|+.++-.|+|-|+..|-+.+..++ .+.++-||..+||.-+..
T Consensus 9 ~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~ 56 (72)
T d2byka1 9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 56 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHc
Confidence 57889999999999999999999998877 577778999999987754
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.058 Score=35.76 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=45.9
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 65 KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 65 ~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
....|+.++|-.-|--.-|.....++|.+.-.+...|+..|+|+||+|+.+
T Consensus 25 ~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lair 75 (106)
T d1u35c1 25 HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 75 (106)
T ss_dssp STTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhccc
Confidence 345689999998898889999999999999999999999999999999964
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]
Probab=92.86 E-value=0.11 Score=34.28 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=46.4
Q ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 62 QDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 62 ~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
.+.....|+.+.|-.-|--.-|..-..++|-+.-.+...|+..|+|+||||+.+
T Consensus 23 k~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAir 76 (106)
T d1tzya_ 23 RKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 76 (106)
T ss_dssp HHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhccc
Confidence 333444689999988888888888899999999999999999999999999964
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]
Probab=91.69 E-value=0.19 Score=32.84 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 68 MRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 68 ~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
.|+.+.|-.-|--.-|.....++|-+.-.+.-.|+..|+|+||+++.+
T Consensus 29 ~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~ 76 (103)
T d1f66c_ 29 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 76 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred eecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhcccc
Confidence 568889988898888999999999999999999999999999999965
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=1.2 Score=31.38 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
-|.-.++.|..++++++....+|++.|++ ++.+||+.. |+ --+.+..||+-..++.
T Consensus 17 ~f~~~i~KVl~qvhP~l~i~~~Al~~i~~----~i~~ll~~L--~~----~~p~sv~dVe~~v~~~ 72 (172)
T d1q9ca_ 17 LLVPALKKVQGQVHPTLESNDDALQYVEE----LILQLLNML--CQ----AQPRSASDVEERVQKS 72 (172)
T ss_dssp SSHHHHHHHHHHHCSSSBCCHHHHHHHHH----HHHHHHHHH--HT----TCCCSTTHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHHH----HHHHHHHHH--Hc----cCCccHHHHHHHHHHh
Confidence 68999999999999999999999977665 455555433 32 2244667998887764
