Citrus Sinensis ID: 048648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MLNNTKYAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHcccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEccEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcHcc
Coil and Loop (DISEMBL)
mlnntkyahnvykisqihpshgiiNQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRlqqgappgdddimLRNAIIVGLggtlfdggIFKLTLKftkeypvkppvvpfvsgmfhrndlkwnsdydVVAIFATIQLmlgdpnlysaANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Flexible Loop (DISEMBL)
MLNNTKYAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Low Complexity Region (SEG)
MLNNTKYAHNVYKISQIHPSHGIINQKlllealvldlletlvilNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Disordered region (IsUnstruct)
******YAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGA**GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW***
Disordered Region (DISOPRED)
*******************************************************************APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK**
Disordered Region (DISEMBL)
MLNNTKYAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Disordered Region (DISPRO)
*LNNTKYAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLNNTKYAHNVYKISQIHPSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P25866	152	Ubiquitin-conjugating enz	N/A	no	0.681	0.815	0.471	4e-28
P42745	152	Ubiquitin-conjugating enz	yes	no	0.681	0.815	0.457	5e-28
P25865	152	Ubiquitin-conjugating enz	yes	no	0.681	0.815	0.457	1e-27
Q9Z255	152	Ubiquitin-conjugating enz	yes	no	0.675	0.809	0.446	2e-27
P49459	152	Ubiquitin-conjugating enz	yes	no	0.675	0.809	0.446	2e-27
P35130	152	Ubiquitin-conjugating enz	N/A	no	0.681	0.815	0.450	2e-27
P23566	151	Ubiquitin-conjugating enz	yes	no	0.681	0.821	0.422	5e-26
P63149	152	Ubiquitin-conjugating enz	yes	no	0.670	0.802	0.428	2e-25
P63148	152	Ubiquitin-conjugating enz	yes	no	0.670	0.802	0.428	2e-25
P63147	152	Ubiquitin-conjugating enz	yes	no	0.670	0.802	0.428	2e-25

>sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/142 (47%), Positives = 86/142 (60%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++I L NA+I G   T +DGG FKLTL+FT++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y +K + +VE SW A
Sbjct: 130 YSENKREYNRKVREVVEQSWTA 151

Catalyzes the covalent attachment of ubiquitin to other proteins.
Triticum aestivum (taxid: 4565)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + +VE SW A
Sbjct: 130 FSESKREYNRRVREVVEQSWTA 151

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + +VE SW A
Sbjct: 130 YSESKREYNRRVRDVVEQSWTA 151

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9Z255|UBE2A_MOUSE Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 85/141 (60%), Gaps = 18/141 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct: 10  MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSWK 180
               + +Y K+   IVE SW+
Sbjct: 130 YQENKREYEKRVSAIVEQSWR 150

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11', as well as 'Lys-48'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P49459|UBE2A_HUMAN Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=1 SV=2

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 85/141 (60%), Gaps = 18/141 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct: 10  MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSWK 180
               + +Y K+   IVE SW+
Sbjct: 130 YQENKREYEKRVSAIVEQSWR 150

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11', as well as 'Lys-48'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ   P      P D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct: 10  MRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + +VE SW A
Sbjct: 130 FSENKREYNRRVREVVEQSWTA 151

Catalyzes the covalent attachment of ubiquitin to other proteins.

Medicago sativa (taxid: 3879)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P23566|UBC2_SCHPO Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp6 PE=1 SV=3

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KR+QQ  P      P  D++ML NA+I+G   T F+ G FKL L F ++YP KPP+
Sbjct: 10  MRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPL 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA +
Sbjct: 70  VKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
               + +Y ++ ++ VE SW++
Sbjct: 130 HRENKKEYVRRVRKTVEDSWES 151

Catalyzes the covalent attachment of ubiquitin to other proteins. Component of the histone H2B ubiquitin ligase complex (HULC) which plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B to form H2BK123ub1. H2BK123ub1 gives a specific tag for epigenetic transcriptional activation and is also a prerequisite for H3K4me and H3K79me formation. Also involved in postreplication repair of UV-damaged DNA, in N-end rule-dependent protein degradation and in sporulation (By similarity). Required for obr1 ubiquitination, which regulates mating-type silencing. With cut8, regulates the nuclear accumulation of the proteasome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63149|UBE2B_RAT Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 18/140 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM  NA+I G  GT F+ G FKL ++F++EYP KPP 
Sbjct: 10  MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSW 179
               + +Y K+   IVE SW
Sbjct: 130 YQENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation (By similarity). In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63148|UBE2B_RABIT Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 18/140 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM  NA+I G  GT F+ G FKL ++F++EYP KPP 
Sbjct: 10  MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSW 179
               + +Y K+   IVE SW
Sbjct: 130 YQENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63147|UBE2B_MOUSE Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 18/140 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM  NA+I G  GT F+ G FKL ++F++EYP KPP 
Sbjct: 10  MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query: 160 LTGGRIDYYKKAQRIVELSW 179
               + +Y K+   IVE SW
Sbjct: 130 YQENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
108711499	149	Ubiquitin-conjugating enzyme E2-17 kDa,	0.681	0.832	0.489	5e-28
225452727	152	PREDICTED: ubiquitin-conjugating enzyme	0.681	0.815	0.485	1e-27
323482816	152	ubiquitin-conjugating enzyme [Paeonia su	0.681	0.815	0.485	2e-27
115455843	152	Os03g0791800 [Oryza sativa Japonica Grou	0.681	0.815	0.485	2e-27
225456701	152	PREDICTED: ubiquitin-conjugating enzyme	0.681	0.815	0.478	3e-27
212721644	152	uncharacterized protein LOC100193988 [Ze	0.681	0.815	0.478	3e-27
308196826	152	ubiquitin-conjugating enzyme [Petunia x	0.681	0.815	0.478	3e-27
317159575	152	ubiquitin-conjugating enzyme E2 [Hevea b	0.681	0.815	0.478	3e-27
351722679	152	uncharacterized protein LOC100499698 [Gl	0.681	0.815	0.478	4e-27
351727319	152	uncharacterized protein LOC100306222 [Gl	0.703	0.842	0.472	4e-27

>gi|108711499|gb|ABF99294.1| Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed [Oryza sativa Japonica Group]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 87/139 (62%), Gaps = 15/139 (10%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT++YP KPPV
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPV 69

Query: 112 VPFVSGMFHRND---------LKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTG 162
           V FVS MFH N+          +W+  YDV AI  +IQ +L DPN  S AN +AA + + 
Sbjct: 70  VRFVSRMFHPNNGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 129

Query: 163 GRIDYYKKAQRIVELSWKA 181
            + +Y +K + IVE SW A
Sbjct: 130 NKREYNRKVREIVEQSWTA 148

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452727|ref|XP_002282719.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 1 [Vitis vinifera] gi|359488893|ref|XP_003633840.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 2 [Vitis vinifera]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT+EYP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + IVE SW A
Sbjct: 130 FSENKREYNRRVREIVEQSWTA 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323482816|gb|ADX86831.1| ubiquitin-conjugating enzyme [Paeonia suffruticosa]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + DY +K + IVE SW A
Sbjct: 130 FSENKRDYNRKVREIVEQSWTA 151

Source: Paeonia suffruticosa

Species: Paeonia suffruticosa

Genus: Paeonia

Family: Paeoniaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455843|ref|NP_001051522.1| Os03g0791800 [Oryza sativa Japonica Group] gi|18844990|dbj|BAB85469.1| Rad6 [Oryza sativa Japonica Group] gi|28269456|gb|AAO37999.1| ubiquitin carrier protein [Oryza sativa Japonica Group] gi|108711497|gb|ABF99292.1| Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed [Oryza sativa Japonica Group] gi|113549993|dbj|BAF13436.1| Os03g0791800 [Oryza sativa Japonica Group] gi|125546000|gb|EAY92139.1| hypothetical protein OsI_13850 [Oryza sativa Indica Group] gi|125588203|gb|EAZ28867.1| hypothetical protein OsJ_12905 [Oryza sativa Japonica Group] gi|215695359|dbj|BAG90550.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767708|dbj|BAG99936.1| unnamed protein product [Oryza sativa Japonica Group] gi|341870591|gb|AEK99335.1| ubiquitin conjugated enzyme [Oryza sativa Japonica Group]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 88/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT++YP KPPV
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPV 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA +
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y +K + IVE SW A
Sbjct: 130 FSENKREYNRKVREIVEQSWTA 151

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456701|ref|XP_002273916.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 2 [Vitis vinifera] gi|225456703|ref|XP_002273845.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 1 [Vitis vinifera] gi|297734010|emb|CBI15257.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+F++EYP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEEYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + IVE SW A
Sbjct: 130 FSENKREYNRRVREIVEQSWTA 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721644|ref|NP_001132525.1| uncharacterized protein LOC100193988 [Zea mays] gi|194694634|gb|ACF81401.1| unknown [Zea mays] gi|413932839|gb|AFW67390.1| putative ubiquitin-conjugating enzyme family isoform 1 [Zea mays] gi|413932840|gb|AFW67391.1| putative ubiquitin-conjugating enzyme family isoform 2 [Zea mays]

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y +K + +VE SW A
Sbjct: 130 FSENKREYNRKVREVVEQSWTA 151

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308196826|gb|ADO17549.1| ubiquitin-conjugating enzyme [Petunia x hybrida]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + DY ++ + IVE SW A
Sbjct: 130 FSENKRDYNRRVREIVEQSWTA 151

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317159575|gb|ADV04062.1| ubiquitin-conjugating enzyme E2 [Hevea brasiliensis]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTSWDGGTFKLTLQFTEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + IVE SW A
Sbjct: 130 FSENKREYNRRVREIVEQSWTA 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722679|ref|NP_001238532.1| uncharacterized protein LOC100499698 [Glycine max] gi|224125952|ref|XP_002319717.1| histone ubiquitination proteins group [Populus trichocarpa] gi|225424930|ref|XP_002277403.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 1 [Vitis vinifera] gi|225424932|ref|XP_002277449.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 2 [Vitis vinifera] gi|255558200|ref|XP_002520127.1| ubiquitin-conjugating enzyme rad6, putative [Ricinus communis] gi|356512389|ref|XP_003524902.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Glycine max] gi|356567546|ref|XP_003551979.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 1 [Glycine max] gi|356567548|ref|XP_003551980.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 2 [Glycine max] gi|449434815|ref|XP_004135191.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Cucumis sativus] gi|449434817|ref|XP_004135192.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Cucumis sativus] gi|449478444|ref|XP_004155320.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Cucumis sativus] gi|449478448|ref|XP_004155321.1| PREDICTED: ubiquitin-conjugating enzyme E2 2-like [Cucumis sativus] gi|56236462|gb|AAV84587.1| ubiquitin carrier protein [Populus tomentosa] gi|116780884|gb|ABK21862.1| unknown [Picea sitchensis] gi|116781020|gb|ABK21929.1| unknown [Picea sitchensis] gi|116788017|gb|ABK24727.1| unknown [Picea sitchensis] gi|116790884|gb|ABK25776.1| unknown [Picea sitchensis] gi|118483844|gb|ABK93813.1| unknown [Populus trichocarpa] gi|118487029|gb|ABK95345.1| unknown [Populus trichocarpa] gi|118487787|gb|ABK95717.1| unknown [Populus trichocarpa] gi|118489383|gb|ABK96496.1| unknown [Populus trichocarpa x Populus deltoides] gi|148910029|gb|ABR18098.1| unknown [Picea sitchensis] gi|217075506|gb|ACJ86113.1| unknown [Medicago truncatula] gi|222858093|gb|EEE95640.1| histone ubiquitination proteins group [Populus trichocarpa] gi|223540619|gb|EEF42182.1| ubiquitin-conjugating enzyme rad6, putative [Ricinus communis] gi|255625891|gb|ACU13290.1| unknown [Glycine max] gi|352145156|gb|AEQ61922.1| ubiqutin-conjugating enzyme 1 [Nelumbo nucifera] gi|388500554|gb|AFK38343.1| unknown [Medicago truncatula] gi|388510920|gb|AFK43526.1| unknown [Medicago truncatula] gi|388521523|gb|AFK48823.1| unknown [Lotus japonicus]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKLTL+FT++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + IVE SW A
Sbjct: 130 FSENKREYNRRVREIVEQSWTA 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727319|ref|NP_001235621.1| uncharacterized protein LOC100306222 [Glycine max] gi|255627915|gb|ACU14302.1| unknown [Glycine max]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 18/146 (12%)

Query: 54  LQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           +++ MRD KRLQQ  P      P D++IML NA I G   T +DGG FKLTL+FT++YP 
Sbjct: 6   MKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAFIFGPDDTPWDGGTFKLTLQFTEDYPN 65

Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           KPP V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +
Sbjct: 66  KPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 125

Query: 156 AATMLTGGRIDYYKKAQRIVELSWKA 181
           AA M +  + +Y +K + IVE SW A
Sbjct: 126 AARMFSENKREYNRKVREIVEQSWTA 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
UNIPROTKB|H0Y9V2	141	UBE2B "Ubiquitin-conjugating e	0.670	0.865	0.458	1.2e-24
TAIR|locus:2058806	152	UBC2 "AT2G02760" [Arabidopsis	0.681	0.815	0.457	2.6e-24
TAIR|locus:2012622	152	UBC1 "AT1G14400" [Arabidopsis	0.681	0.815	0.457	5.3e-24
UNIPROTKB|Q9W6F3	152	UBE2A "Uncharacterized protein	0.675	0.809	0.446	8.7e-24
UNIPROTKB|E2RIY4	216	UBE2A "Uncharacterized protein	0.675	0.569	0.446	8.7e-24
UNIPROTKB|P49459	152	UBE2A "Ubiquitin-conjugating e	0.675	0.809	0.446	8.7e-24
UNIPROTKB|F1RU99	152	UBE2A "Uncharacterized protein	0.675	0.809	0.446	8.7e-24
MGI|MGI:102959	152	Ube2a "ubiquitin-conjugating e	0.675	0.809	0.446	8.7e-24
ZFIN|ZDB-GENE-030616-72	152	ube2a "ubiquitin-conjugating e	0.675	0.809	0.446	8.7e-24
ZFIN|ZDB-GENE-030131-4195	152	zgc:55512 "zgc:55512" [Danio r	0.675	0.809	0.446	1.1e-23

UNIPROTKB|H0Y9V2 UBE2B "Ubiquitin-conjugating enzyme E2 B" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 60/131 (45%), Positives = 82/131 (62%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM  NA+I G  GT F+ G FKL ++F++EYP KPP 
Sbjct:     8 MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 67

Query:   112 VPFVSGMFHRNDL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYY 168
             V F+S MFH ND+   +W+  YDV +I  +IQ +L +PN  S AN QAA +    + +Y 
Sbjct:    68 VRFLSKMFHPNDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 127

Query:   169 KKAQRIVELSW 179
             K+   IVE SW
Sbjct:   128 KRVSAIVEQSW 138

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

TAIR|locus:2058806 UBC2 "AT2G02760" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 65/142 (45%), Positives = 87/142 (61%)

Query:    58 MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQQ  P G      D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct:    10 MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct:    70 VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query:   160 LTGGRIDYYKKAQRIVELSWKA 181
              +  + +Y ++ + +VE SW A
Sbjct:   130 FSESKREYNRRVREVVEQSWTA 151

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0033523 "histone H2B ubiquitination" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009650 "UV protection" evidence=IGI

TAIR|locus:2012622 UBC1 "AT1G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 65/142 (45%), Positives = 87/142 (61%)

Query:    58 MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQQ  P G      D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct:    10 MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct:    70 VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query:   160 LTGGRIDYYKKAQRIVELSWKA 181
              +  + +Y ++ + +VE SW A
Sbjct:   130 YSESKREYNRRVRDVVEQSWTA 151

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IDA;TAS

GO:0009910 "negative regulation of flower development" evidence=IGI

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0033523 "histone H2B ubiquitination" evidence=IGI

GO:0006301 "postreplication repair" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

UNIPROTKB|Q9W6F3 UBE2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0033522 "histone H2A ubiquitination" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|E2RIY4 UBE2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    75 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 134

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:   135 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 194

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   195 YQENKREYEKRVSAIVEQSWR 215

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P49459 UBE2A "Ubiquitin-conjugating enzyme E2 A" [Homo sapiens (taxid:9606)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0005524 "ATP binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0000785 "chromatin" evidence=ISS

GO:0033522 "histone H2A ubiquitination" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006301 "postreplication repair" evidence=NAS

GO:0009411 "response to UV" evidence=IGI

GO:0033503 "HULC complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1RU99 UBE2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0033522 "histone H2A ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

MGI|MGI:102959 Ube2a "ubiquitin-conjugating enzyme E2A" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000785 "chromatin" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IGI;IMP

GO:0001741 "XY body" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033503 "HULC complex" evidence=ISO

GO:0033522 "histone H2A ubiquitination" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

GO:0060135 "maternal process involved in female pregnancy" evidence=IMP

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

ZFIN|ZDB-GENE-030616-72 ube2a "ubiquitin-conjugating enzyme E2A (RAD6 homolog)" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-4195 zgc:55512 "zgc:55512" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 63/141 (44%), Positives = 85/141 (60%)

Query:    58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
             MRD KRLQ+  P      P +++IM+ NA+I G  GT F+ G FKLT++FT+EYP KPP 
Sbjct:    10 MRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTVEFTEEYPNKPPT 69

Query:   112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             V FVS MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct:    70 VRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129

Query:   160 LTGGRIDYYKKAQRIVELSWK 180
                 + +Y K+   IVE SW+
Sbjct:   130 YQENKREYEKRVSAIVEQSWR 150

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.824
3rd Layer	6.3.2	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020897001 RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (152 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-28
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	5e-27
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-26
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-24
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	8e-10
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	5e-05

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  103 bits (258), Expect = 2e-28
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 19/142 (13%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++LK+LQ+  PPG       DD++    A I G   T ++GGIFKLTL+F ++YP KPP
Sbjct: 11  LKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPP 70

Query: 111 VVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
            V F + +FH N              +W+  Y +  I  ++Q +L  PN  S  N +AAT
Sbjct: 71  KVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAAT 130

Query: 159 MLTGGRIDYYKKAQRIVELSWK 180
           +    + +Y KK +  V+   +
Sbjct: 131 LYREDKEEYEKKVREWVKKYAE 152

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 98.8 bits (247), Expect = 5e-27
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 19/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++LK L +  PPG      DD++      I+G  GT ++GG+FKL ++F ++YP KPP 
Sbjct: 3   QKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPK 62

Query: 112 VPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
           V F + ++H N             D  W+    +  +  +IQ +L +PN     N +AA 
Sbjct: 63  VKFTTKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAEAAK 122

Query: 159 MLTGGRIDYYKKAQRIV 175
           +    R ++ KK +  V
Sbjct: 123 LYRKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 98.0 bits (245), Expect = 1e-26
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 19/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++LK L++  P G      +++++  +  I G   T ++GGIFKL ++F ++YP KPP 
Sbjct: 5   QKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPK 64

Query: 112 VPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
           V FV+ ++H N                W+  Y +  +  ++Q +L +PN     N +AA 
Sbjct: 65  VRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAK 124

Query: 159 MLTGGRIDYYKKAQRIV 175
           +    R ++ KKA+   
Sbjct: 125 LYKENREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 92.4 bits (230), Expect = 2e-24
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 20/143 (13%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++LK L++  PPG       D++++     IVG  GT ++GG+FKLT++F ++YP KPP
Sbjct: 3   LKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPP 62

Query: 111 VVPFVSGMFHRN-------DL------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
            V F++ ++H N        L      KW+    +  +  ++Q +L +PN  S  N  AA
Sbjct: 63  KVKFITKIYHPNVDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADAA 122

Query: 158 TMLTGGRIDYYKKAQRIVELSWK 180
            +    R ++ KKA+   +   +
Sbjct: 123 ELYKKNREEFKKKAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 54.4 bits (130), Expect = 8e-10
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 18/132 (13%)

Query: 59  RDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
           ++ K L +  P      P D+++    A I+G   + + GG+F L++ F  +YP KPP V
Sbjct: 8   KEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKV 67

Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
            F + ++H N         D+   +W+    V  +  +I  +L DPN       + A + 
Sbjct: 68  QFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF 127

Query: 161 TGGRIDYYKKAQ 172
              R  Y   A+
Sbjct: 128 KENRSRYEATAR 139

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 82  IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN---------DL---KWNSD 129
           + G  GT ++GG +KL L   ++YP++PP V F++ ++H N         D+   KW+  
Sbjct: 38  MEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPA 97

Query: 130 YDVVAIFATIQLMLGDP 146
             +  +  +IQ +L  P
Sbjct: 98  LQIRTVLLSIQALLSAP 114

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.91
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.86
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.78
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.76
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.55
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.37
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.24
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	97.13
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	96.88
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	96.82
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.38
smart00591	107	RWD domain in RING finger and WD repeat containing	95.88
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	94.75
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	93.87
KOG3357	167	consensus Uncharacterized conserved protein [Funct	91.5
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	90.44
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	89.99
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	89.9
PF06113	333	BRE: Brain and reproductive organ-expressed protei	84.93
KOG4018	215	consensus Uncharacterized conserved protein, conta	84.19

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-45  Score=278.02  Aligned_cols=128  Identities=26%  Similarity=0.526  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      .+||.+|+++|.++++.      +++|++.|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+   
T Consensus         3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G   82 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG   82 (148)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence            46999999999998887      589999999999999999999999999999999999999999999999999999   


Q ss_pred             ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                               +|+|+++++.||.+|+++|.+|++++|++.++|.+|+.|+.+|.++||+|+++||+.
T Consensus        83 ~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~  148 (148)
T KOG0417|consen   83 RICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG  148 (148)
T ss_pred             cchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence                     899999999999999999999999999999999999999999999999999999973

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.7e-44  Score=273.46  Aligned_cols=129  Identities=37%  Similarity=0.654  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+.+||++|++.|+++++.       +++|++.|+++|.||++||||||+|++.|.||++||++||+|+|.|+|||||||
T Consensus         5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~   84 (153)
T COG5078           5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD   84 (153)
T ss_pred             hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence            3889999999999999966       444999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  .|+|++++++||.+|+++|.+||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus        85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence                        89999999999999999999999999999999999999999999999999999985

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-42  Score=251.66  Aligned_cols=133  Identities=46%  Similarity=0.778  Sum_probs=127.8

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      +..|-+||++|+++|+++++.      .++|++.|.++|+||.+|||+||+|++.+.|+++||.+||.|+|++..|||||
T Consensus         2 stpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv   81 (152)
T KOG0419|consen    2 STPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV   81 (152)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence            456789999999999999887      78999999999999999999999999999999999999999999999999999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhcC
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI  182 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~i  182 (182)
                      |            .|+|.+++.+||.+||+||.+|++++|+|.+||++|++|+++|.++++..+.++...+
T Consensus        82 ya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~  152 (152)
T KOG0419|consen   82 YADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI  152 (152)
T ss_pred             CCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence            9            8999999999999999999999999999999999999999999999999999987654

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=3.4e-41  Score=260.31  Aligned_cols=128  Identities=24%  Similarity=0.447  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648           53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--  124 (182)
                      +.+||++|+++++++++.      .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+  
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~   82 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   82 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence            469999999999988766      778999999999999999999999999999999999999999999999999999  


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+.+|.++|++|+++||.
T Consensus        83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390         83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence                      79999999999999999999999999999999999999999999999999999986

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=8.9e-41  Score=256.72  Aligned_cols=127  Identities=25%  Similarity=0.482  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648           53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--  124 (182)
                      +.+||++|+++|+++++.      .++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+  
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            358999999999988766      778999999999999999999999999999999999999999999999999998  


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                                +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence                      7999999999999999999999999999999999999999999999999999997

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-38  Score=238.13  Aligned_cols=129  Identities=35%  Similarity=0.526  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +..-|+++|++|++.+..       +++|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|++|||||| 
T Consensus         6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~   85 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE   85 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence            556789999999998877       778999999999999999999999999999999999999999999999999999 


Q ss_pred             ------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                              .|+|..|+++||++|.+||.+||.++|+|-|||+.|++++++|.+++++++.++..
T Consensus        86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e  165 (171)
T KOG0425|consen   86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE  165 (171)
T ss_pred             CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                                    89999999999999999999999999999999999999999999999999998865


Q ss_pred             c
Q 048648          181 A  181 (182)
Q Consensus       181 ~  181 (182)
                      .
T Consensus       166 ~  166 (171)
T KOG0425|consen  166 E  166 (171)
T ss_pred             h
Confidence            4

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-37  Score=232.01  Aligned_cols=131  Identities=29%  Similarity=0.488  Sum_probs=125.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP-----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~-----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      ++.++.||++|-+.+.++.+.           +..|++.|.|.|.|+.||+||||.|.+++.||++||.+||+|+|.++.
T Consensus         2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl   81 (158)
T KOG0424|consen    2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL   81 (158)
T ss_pred             cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence            445689999999999998776           367899999999999999999999999999999999999999999999


Q ss_pred             ccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          119 FHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       119 ~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      ||||||              +|+|+.||.+||..||.||.+||+.+|+|.+|..+|++|+.+|.++||.++++||.
T Consensus        82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            999999              69999999999999999999999999999999999999999999999999999986

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-36  Score=223.87  Aligned_cols=129  Identities=32%  Similarity=0.556  Sum_probs=125.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      +..|+|||++|+++|-.++++       +++|++.|.|+|.||+||+|+||+|-.++.||.+||.+||+++|...+||||
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN   81 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN   81 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence            457899999999999999888       8899999999999999999999999999999999999999999999999999


Q ss_pred             cc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648          123 DL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL  177 (182)
Q Consensus       123 I~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~  177 (182)
                      ||                         .|+|..+++.||+++.+||.+||-++++|.+|+.++++|+.+|++.|++.+.|
T Consensus        82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK  161 (165)
T KOG0426|consen   82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK  161 (165)
T ss_pred             ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99                         89999999999999999999999999999999999999999999999999987


Q ss_pred             H
Q 048648          178 S  178 (182)
Q Consensus       178 ~  178 (182)
                      .
T Consensus       162 t  162 (165)
T KOG0426|consen  162 T  162 (165)
T ss_pred             h
Confidence            5

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-36  Score=235.13  Aligned_cols=129  Identities=21%  Similarity=0.401  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           53 QLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      +.+||++|.+++.+++..         ..+|+...++.|.||+|||||||+|.++|++|++||++||+|+|.|+||||||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV   83 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV   83 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence            679999999999988753         66899999999999999999999999999999999999999999999999999


Q ss_pred             c-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          124 L-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       124 ~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      +             .|+|++|++++|++||++|..|++.+|.+..+|++|.++++.|.++||.|+..||..
T Consensus        84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~  154 (200)
T KOG0418|consen   84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG  154 (200)
T ss_pred             CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence            9             899999999999999999999999999999999999999999999999999999863

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=4.7e-36  Score=228.09  Aligned_cols=120  Identities=34%  Similarity=0.682  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHcCCCC------CC-CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc----
Q 048648           56 QWMRDLKRLQQGAPP------GD-DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL----  124 (182)
Q Consensus        56 RL~~El~~l~~~~~~------~~-~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~----  124 (182)
                      ||++|++++++.++.      .+ +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+    
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            899999999998877      33 4999999999999999999999999999999999999999999999999999    


Q ss_pred             ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHH
Q 048648          125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIV  175 (182)
Q Consensus       125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~  175 (182)
                               .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus        81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence                     399999999999999999999999999999999999999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=6.4e-35  Score=222.23  Aligned_cols=121  Identities=31%  Similarity=0.630  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc----
Q 048648           55 QQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL----  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~----  124 (182)
                      +||++|++++++..+.      .++|++.|+++|.||++|||+||.|+++|.||++||.+||+|+|.|+++||||+    
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~   81 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK   81 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence            7999999999998766      667999999999999999999999999999999999999999999999999999    


Q ss_pred             --------C-CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHH
Q 048648          125 --------K-WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIV  175 (182)
Q Consensus       125 --------~-W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~  175 (182)
                              . |+|++++++||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++++
T Consensus        82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence                    4 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2.5e-34  Score=219.91  Aligned_cols=125  Identities=36%  Similarity=0.649  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHcCCCC------CC-CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           55 QQWMRDLKRLQQGAPP------GD-DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~------~~-~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      +||++|++++++..+.      .+ +|++.|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+   
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            5999999999998776      34 4999999999999999999999999999999999999999999999999999   


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                                +|+|++++++||.+|+++|.+|+.++|+|.+|+++|++|++.|.++|++++++++
T Consensus        81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence                      5999999999999999999999999999999999999999999999999999874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-34  Score=212.23  Aligned_cols=129  Identities=17%  Similarity=0.372  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+.+||++||..|+++...       +++|++.|++.|. |++-||..|.|+++|.||.+||++||+|.|.|+|||||||
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD   80 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD   80 (153)
T ss_pred             chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence            3579999999999998876       8889999999998 8999999999999999999999999999999999999999


Q ss_pred             -------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                   +|.|+++.++||++|.+++.+|+++.|++.|+|..|.+|+..|.++|.++++||+..
T Consensus        81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~  150 (153)
T KOG0422|consen   81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK  150 (153)
T ss_pred             CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence                         899999999999999999999999999999999999999999999999999999864

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-33  Score=211.11  Aligned_cols=126  Identities=33%  Similarity=0.544  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      ....+||++||-.|.....+      +++|++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|+.||||||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD  107 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD  107 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence            46679999999999987666      778999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL  177 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~  177 (182)
                                  .|+..++++.||++||++|-+||.++|+|..||+++. |.++|.+.+.+..++
T Consensus       108 ~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  108 LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence                        8999999999999999999999999999999999998 999999998877654

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=4.2e-32  Score=208.05  Aligned_cols=128  Identities=24%  Similarity=0.406  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc------
Q 048648           54 LQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL------  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~------  124 (182)
                      .||+..|+..|......   .++++..++|.+.||.+|||+||+|+++|.+|++||++.|+|.|+++||||||+      
T Consensus         5 ~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsV   84 (189)
T KOG0416|consen    5 KRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSV   84 (189)
T ss_pred             ccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCcc
Confidence            48999999999887766   777799999999999999999999999999999999999999999999999999      


Q ss_pred             -------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                             .|+|.+++..|+.. |-.||..||+.+|+|.+||.+|..+++.|.+++++++++||..
T Consensus        85 CLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~  149 (189)
T KOG0416|consen   85 CLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP  149 (189)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence                   89999999999987 6789999999999999999999999999999999999999964

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.3e-30  Score=197.97  Aligned_cols=133  Identities=21%  Similarity=0.369  Sum_probs=119.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCC------CCCCcce--EEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648           46 VGGGLKCQLQQWMRDLKRLQQGAPP------GDDDIML--RNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG  117 (182)
Q Consensus        46 ~~~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~--w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~  117 (182)
                      +..+.+.+.-||++|+.++.--+..      ..++...  ++++|. |+++.|.||.|+|.+.+|+.||+.||+|+|+|+
T Consensus        22 ~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk  100 (184)
T KOG0420|consen   22 TRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK  100 (184)
T ss_pred             ccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence            3445567788999999888764443      3455555  999997 999999999999999999999999999999999


Q ss_pred             cccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          118 MFHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       118 i~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                      ||||||+            +|+|+.++.+|+.+|+.++.+|+++||+|.+||..+++|++.|+..||+....++
T Consensus       101 V~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~  174 (184)
T KOG0420|consen  101 VYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC  174 (184)
T ss_pred             cccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence            9999999            9999999999999999999999999999999999999999999999999887654

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.9e-29  Score=190.32  Aligned_cols=132  Identities=30%  Similarity=0.502  Sum_probs=125.8

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      .+..++.+.+|++.|..++++      +++|.....+.|.||.||||++|+|+..+.+..|||.+||+-.|+|+||||||
T Consensus         8 pp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV   87 (223)
T KOG0423|consen    8 PPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV   87 (223)
T ss_pred             ChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence            456678999999999999988      78899999999999999999999999999999999999999999999999999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      .            +|+|++.++.||..|..+|..|++++.+|.+|++++.++.++|.+.||.++.-+|..
T Consensus        88 aaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p  157 (223)
T KOG0423|consen   88 AANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP  157 (223)
T ss_pred             ccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence            9            999999999999999999999999999999999999999999999999999988753

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.7e-24  Score=168.87  Aligned_cols=97  Identities=23%  Similarity=0.528  Sum_probs=89.9

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc-----
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG-----  117 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~-----  117 (182)
                      .+..+.+||++||+.|.+++.+      .++||+.||.+|.||+||||+||.|+..+.||++||++||.|+.+|+     
T Consensus         2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk   81 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK   81 (244)
T ss_pred             cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence            3467889999999999999988      88999999999999999999999999999999999999999999887     


Q ss_pred             ----------cccCCccCCCCcccHHHHHHHHHHhhCCCC
Q 048648          118 ----------MFHRNDLKWNSDYDVVAIFATIQLMLGDPN  147 (182)
Q Consensus       118 ----------i~HPnI~~W~p~~tl~~il~~I~~ll~~p~  147 (182)
                                -|||.  .|+|.|++.+||.+|.++|.+-.
T Consensus        82 tntRLCLSiSDfHPd--sWNP~WsVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen   82 TNTRLCLSISDFHPD--SWNPGWSVSTILTGLLSFMTEDS  119 (244)
T ss_pred             cCceEEEeccccCcC--cCCCcccHHHHHHHHHHHHhcCC
Confidence                      48888  99999999999999999998543

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=9.5e-22  Score=145.34  Aligned_cols=103  Identities=22%  Similarity=0.417  Sum_probs=94.1

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI  123 (182)
                      +..+.+||++|+.+++.+++.     ..+|+..|.+-+.|.+||.|+|.+|.+.++||+.||+..|.|-|..++ .||+|
T Consensus        13 s~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHi   92 (161)
T KOG0427|consen   13 SKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHI   92 (161)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCce
Confidence            457889999999999999988     788999999999999999999999999999999999999999999887 89999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhCC-CCCCChh
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLGD-PNLYSAA  152 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~~-p~~~~p~  152 (182)
                      |            +|+|++++.+|.++|.+||+. ..-..|.
T Consensus        93 YSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~  134 (161)
T KOG0427|consen   93 YSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT  134 (161)
T ss_pred             ecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence            9            899999999999999999984 3333444

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.9e-18  Score=135.56  Aligned_cols=125  Identities=18%  Similarity=0.338  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCC--CCCeeeeccccccCCcc--
Q 048648           55 QQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV--KPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnI~--  124 (182)
                      ..|..|+..+.+...+      +..|-+.|-++|++. .+.|.||+|+|+|.+|++||.  +-|+|.|.+.+|||.|.  
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~  100 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK  100 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence            4677888888866655      778899999999975 557999999999999999995  46999999999999999  


Q ss_pred             -----------CCCCcc-cHHHHHHHHHHhhCCCCCCCh-h-hHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 -----------KWNSDY-DVVAIFATIQLMLGDPNLYSA-A-NQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 -----------~W~p~~-tl~~il~~I~~ll~~p~~~~p-~-n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                 .|+-.- .+++||..||..+.+|+.+.+ + |++|+.+|++++++|.++|+++++.+-.
T Consensus       101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~  170 (258)
T KOG0429|consen  101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS  170 (258)
T ss_pred             ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                       897774 799999999999999998877 4 9999999999999999999999987654

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.7e-18  Score=140.16  Aligned_cols=91  Identities=19%  Similarity=0.455  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc-------
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG-------  117 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~-------  117 (182)
                      ..+.|||++|.++|+ ++.+      -++|++.|+.+|.||.||-|+||+|+.+|.||.+||++||.+-.+|+       
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~n   88 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVN   88 (314)
T ss_pred             CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeC
Confidence            467899999999999 4544      88999999999999999999999999999999999999999988876       


Q ss_pred             --------cccCCccCCCCcccHHHHHHHHHHhhC
Q 048648          118 --------MFHRNDLKWNSDYDVVAIFATIQLMLG  144 (182)
Q Consensus       118 --------i~HPnI~~W~p~~tl~~il~~I~~ll~  144 (182)
                              -|||.  .|.|+|+++..|++|..+|-
T Consensus        89 kKiCLSISgyHPE--tWqPSWSiRTALlAlIgFmP  121 (314)
T KOG0428|consen   89 KKICLSISGYHPE--TWQPSWSIRTALLALIGFMP  121 (314)
T ss_pred             ceEEEEecCCCcc--ccCcchhHHHHHHHHHcccc
Confidence                    27888  99999999999999988884

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=6e-15  Score=138.90  Aligned_cols=133  Identities=24%  Similarity=0.340  Sum_probs=106.2

Q ss_pred             cCCcccchhHHHHHHHhhhhHHHHhhcCCCCcHHH---HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCC
Q 048648           19 PSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQ---LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTL   89 (182)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tp   89 (182)
                      .+=..+.++...+|-|..++....-+...+.....   .+..+.|.+-|..+.+.      .++.+..+.++|.||+|||
T Consensus       815 ~~~~~~~d~~~~~F~v~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tp  894 (1101)
T KOG0895|consen  815 FSVVSEDDDGSLRFDVNYDYMDHHKNANDGNKAAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTP  894 (1101)
T ss_pred             cccccCCCchhccccccCchHHHhhhhcccccHHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCc
Confidence            33345556666888888888887777666655443   23334455556655555      8889999999999999999


Q ss_pred             CCCCEEEEEEeeCCCCCCCCCeeeeccc--cccCCcc-------------------CCCCcccHHHHHHHHHHhhC--CC
Q 048648           90 FDGGIFKLTLKFTKEYPVKPPVVPFVSG--MFHRNDL-------------------KWNSDYDVVAIFATIQLMLG--DP  146 (182)
Q Consensus        90 Y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnI~-------------------~W~p~~tl~~il~~I~~ll~--~p  146 (182)
                      |.+|+|.|+|.||.+||.+||.|.+.+.  .++||+|                   .|+|+.++.++|.+||.|+.  +|
T Consensus       895 y~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p  974 (1101)
T KOG0895|consen  895 YQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP  974 (1101)
T ss_pred             cccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence            9999999999999999999999999986  5999999                   79999999999999999987  45


Q ss_pred             CCCCh
Q 048648          147 NLYSA  151 (182)
Q Consensus       147 ~~~~p  151 (182)
                      ..+.|
T Consensus       975 y~ne~  979 (1101)
T KOG0895|consen  975 YFNEA  979 (1101)
T ss_pred             ccCcc
Confidence            55544

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.1e-12  Score=97.68  Aligned_cols=92  Identities=20%  Similarity=0.432  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC--------CCCCc--ceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           52 CQLQQWMRDLKRLQQGAPP--------GDDDI--MLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~--------~~~~~--~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      ++..||.+|+.+-++...+        +.+|+  ..|..+|.||+.|+||+-+|.+.|.+.++||..||+|+|.+++--+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            3456788888887665555        44454  7899999999999999999999999999999999999999998666


Q ss_pred             Ccc---------------CCCCcccHHHHHHHHHHhh
Q 048648          122 NDL---------------KWNSDYDVVAIFATIQLML  143 (182)
Q Consensus       122 nI~---------------~W~p~~tl~~il~~I~~ll  143 (182)
                      .|.               .|+-.++++.+|..++..+
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m  121 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEM  121 (138)
T ss_pred             ccccCCCccCccccchhhcccccchhhHHHHhhhHHH
Confidence            655               8999999999999997544

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=3.2e-11  Score=114.12  Aligned_cols=95  Identities=26%  Similarity=0.560  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc---cccC
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG---MFHR  121 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HP  121 (182)
                      ....+|+++|++.+.++.+.      .+.+++..+++|.||.||||++|+|.|+|.||..||..||.|.++|.   .+.|
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP  360 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP  360 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence            45678999999999999888      88899999999999999999999999999999999999999999987   6999


Q ss_pred             Ccc-------------------CCCCc-ccHHHHHHHHHHhhCC
Q 048648          122 NDL-------------------KWNSD-YDVVAIFATIQLMLGD  145 (182)
Q Consensus       122 nI~-------------------~W~p~-~tl~~il~~I~~ll~~  145 (182)
                      |.|                   .|+|. .++.++|.+||.++.+
T Consensus       361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            999                   79998 7899999999999874

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0007  Score=49.51  Aligned_cols=58  Identities=22%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             EEEEEeeCCCCCCCCCeeeeccccccCCcc------------------CCCCcccHHHHHHHHHHhhCCCC--CCChhhH
Q 048648           95 FKLTLKFTKEYPVKPPVVPFVSGMFHRNDL------------------KWNSDYDVVAIFATIQLMLGDPN--LYSAANQ  154 (182)
Q Consensus        95 f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~------------------~W~p~~tl~~il~~I~~ll~~p~--~~~p~n~  154 (182)
                      ..+.+.|++|||+.||.+|..    +|.++                  +|+.+++++.++++|..++-.-.  .+.|++.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv----~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k   88 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVV----KPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK   88 (122)
T ss_pred             eEeeeecccCCCCCCCcceee----eecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence            467788999999999998755    45555                  89999999999999999987543  4455544


Q ss_pred             HH
Q 048648          155 QA  156 (182)
Q Consensus       155 ~a  156 (182)
                      +.
T Consensus        89 ~s   90 (122)
T KOG0897|consen   89 SS   90 (122)
T ss_pred             hh
Confidence            43

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=96.88  E-value=0.0075  Score=44.82  Aligned_cols=67  Identities=16%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             CcceEEEEEecCCCCCCCCCEEE--EEEeeCCCCCCCCCeeeeccccc-----cCCcc-----------CCCC-cccHHH
Q 048648           74 DIMLRNAIIVGLGGTLFDGGIFK--LTLKFTKEYPVKPPVVPFVSGMF-----HRNDL-----------KWNS-DYDVVA  134 (182)
Q Consensus        74 ~~~~w~~~i~Gp~~tpY~gg~f~--~~i~fp~~YP~~pP~v~f~t~i~-----HPnI~-----------~W~p-~~tl~~  134 (182)
                      .+....++|.-    .|+|..|.  +.|-+|.+||.+||.|.......     +.+|+           +|++ ..+|.+
T Consensus        31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~  106 (121)
T PF05743_consen   31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVD  106 (121)
T ss_dssp             EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHH
T ss_pred             eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHH
Confidence            34555555542    48888885  55668999999999997764421     33555           9988 788999


Q ss_pred             HHHHHHHhhC
Q 048648          135 IFATIQLMLG  144 (182)
Q Consensus       135 il~~I~~ll~  144 (182)
                      ++..++..+.
T Consensus       107 lv~~l~~~F~  116 (121)
T PF05743_consen  107 LVQELQAVFS  116 (121)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHHHHh
Confidence            9999988876

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=96.82  E-value=0.0036  Score=47.06  Aligned_cols=55  Identities=24%  Similarity=0.421  Sum_probs=47.7

Q ss_pred             CCCEEEEEEeeCCCCCCCCCeeeecccc---ccCCcc---------------CCCCcccHHHHHHHHHHhhCC
Q 048648           91 DGGIFKLTLKFTKEYPVKPPVVPFVSGM---FHRNDL---------------KWNSDYDVVAIFATIQLMLGD  145 (182)
Q Consensus        91 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnI~---------------~W~p~~tl~~il~~I~~ll~~  145 (182)
                      .|+.+.+.|.+|++||..||.|....+.   +=|+|+               .|.|.-++.++|.....+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999888544   567777               789999999999999888873

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.38  E-value=0.015  Score=41.36  Aligned_cols=64  Identities=16%  Similarity=0.109  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHcCCCC-----CCCCcceEEEEEe--cCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           55 QQWMRDLKRLQQGAPP-----GDDDIMLRNAIIV--GLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~--Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      .+...|+..|+.-.+.     ...+...+.+.+.  ....+.-....+.+.+.||++||..+|.|...+..
T Consensus         4 e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            4677888888876655     2334455566662  22344445668999999999999999999877653

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.88  E-value=0.06  Score=37.91  Aligned_cols=47  Identities=15%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             CCEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhCC
Q 048648           92 GGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGD  145 (182)
Q Consensus        92 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~~  145 (182)
                      ...+.+.+.||++||..+|.|.+.+.       .|-+......+...+.....+
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~-------~~l~~~~~~~l~~~l~~~~~e   86 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS-------EGLSDEQLAELLKKLEEIAEE   86 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC-------CCCCHHHHHHHHHHHHHHHHH
Confidence            45589999999999999999988764       355555666666666665543

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=94.75  E-value=0.011  Score=45.02  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCE----------EEEEEeeCCCCCCCCCeeee
Q 048648           51 KCQLQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGI----------FKLTLKFTKEYPVKPPVVPF  114 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~----------f~~~i~fp~~YP~~pP~v~f  114 (182)
                      ..-..||.+|+..|-+.-..   .++|++...   .-+.||-|.|.+          |.+++.+|..||..||.+..
T Consensus        23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le---sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l   96 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLE---SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL   96 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT---EEEE---E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCeEEec---cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence            56678999999998764333   444444322   346777777643          56667779999999999864

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=93.87  E-value=0.39  Score=35.80  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             ceEEEEEec--CCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc-------cCCcc-------------------CCC
Q 048648           76 MLRNAIIVG--LGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF-------HRNDL-------------------KWN  127 (182)
Q Consensus        76 ~~w~~~i~G--p~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-------HPnI~-------------------~W~  127 (182)
                      ..|.+ |.|  .+.+.|.+..-.+.|.+|+.||..+|.+.+..+-.       .|+-.                   .|+
T Consensus        24 ~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~  102 (122)
T PF14462_consen   24 RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWR  102 (122)
T ss_pred             ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCC
Confidence            34444 555  34556999999999999999999999887775521       23111                   799


Q ss_pred             Ccc-cHHHHHHHHHHhhC
Q 048648          128 SDY-DVVAIFATIQLMLG  144 (182)
Q Consensus       128 p~~-tl~~il~~I~~ll~  144 (182)
                      |.. +|.+.|..|...|.
T Consensus       103 P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  103 PGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCCCcHHHHHHHHHHHHh
Confidence            986 58888888876653

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.50  E-value=0.41  Score=36.04  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCCE----------EEEEEeeCCCCCCCCCeee
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGI----------FKLTLKFTKEYPVKPPVVP  113 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg~----------f~~~i~fp~~YP~~pP~v~  113 (182)
                      .....-.+||.+|++.|-.....+.++-..|.-+=..+.||-|-|.+          |.+++.+|-.||-..|.+.
T Consensus        23 rd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia   98 (167)
T KOG3357|consen   23 RDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA   98 (167)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence            33345678999999998764333333333444444568888888854          5556667999999999874

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=90.44  E-value=0.39  Score=37.47  Aligned_cols=50  Identities=18%  Similarity=0.411  Sum_probs=40.8

Q ss_pred             EEEEeeCCCCCCCCCeeeeccccc---cCCcc------------------CCCCcccHHHHHHHHHHhhCC
Q 048648           96 KLTLKFTKEYPVKPPVVPFVSGMF---HRNDL------------------KWNSDYDVVAIFATIQLMLGD  145 (182)
Q Consensus        96 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnI~------------------~W~p~~tl~~il~~I~~ll~~  145 (182)
                      .+.|.|+.+||..+|.|.+..+.|   +|++.                  +|.++.++..+|..|...|.+
T Consensus        56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            456889999999999988887655   35555                  789999999999999988853

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.99  E-value=1.8  Score=37.58  Aligned_cols=91  Identities=14%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEE--EEeeCCCCCCCCCeeeecccc--
Q 048648           52 CQLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKL--TLKFTKEYPVKPPVVPFVSGM--  118 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~t~i--  118 (182)
                      .+.+.+...+.......+.         ...+++...++|.    .+|.|.+|.+  .|-+.+.||..||.|.....-  
T Consensus        20 ~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M   95 (365)
T KOG2391|consen   20 LTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTM   95 (365)
T ss_pred             hHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchh
Confidence            3344555555555554444         2234455556663    3688888765  455799999999998665431  


Q ss_pred             ---ccCCcc-----------CCCCc-ccHHHHHHHHHHhhCCC
Q 048648          119 ---FHRNDL-----------KWNSD-YDVVAIFATIQLMLGDP  146 (182)
Q Consensus       119 ---~HPnI~-----------~W~p~-~tl~~il~~I~~ll~~p  146 (182)
                         -|-+|+           .|.|. ++|..++..+.+.+.++
T Consensus        96 ~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~  138 (365)
T KOG2391|consen   96 IIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSED  138 (365)
T ss_pred             hhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCC
Confidence               366677           99765 68999998888888753

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=89.90  E-value=0.56  Score=40.00  Aligned_cols=83  Identities=18%  Similarity=0.316  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHcCCCC-C--CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCccCCC
Q 048648           52 CQLQQWMRDLKRLQQGAPP-G--DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRNDLKWN  127 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~-~--~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~~W~  127 (182)
                      ....+|.+|+.++..+... .  +++....++.+..   +   +....++|.++.+||..+|.+..--++ +..   .|.
T Consensus        99 ~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~---~w~  169 (291)
T PF09765_consen   99 QYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPIPFSL---SWS  169 (291)
T ss_dssp             GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS-HHH---HHH
T ss_pred             HHHHHHHHHHHHhccccceEEecCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCcchhh---hhc
Confidence            3457899999999987766 4  8889999998873   2   256788999999999999986544433 111   688


Q ss_pred             C-cccHHHHHHHHHHhh
Q 048648          128 S-DYDVVAIFATIQLML  143 (182)
Q Consensus       128 p-~~tl~~il~~I~~ll  143 (182)
                      + ..++.+++...+..|
T Consensus       170 ~~~ssL~~v~~qF~~~l  186 (291)
T PF09765_consen  170 PSQSSLKDVVQQFQEAL  186 (291)
T ss_dssp             CHT-SHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHH
Confidence            8 667777766655554

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins

Probab=84.93  E-value=11  Score=32.78  Aligned_cols=49  Identities=22%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeec-cccccCCcc------CCCCc
Q 048648           75 IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-SGMFHRNDL------KWNSD  129 (182)
Q Consensus        75 ~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnI~------~W~p~  129 (182)
                      -+.+++.|      ||.|...+-+|.|...||..||-+.|. ..-|+|...      +|++.
T Consensus        53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~l~~L~~Wd~~  108 (333)
T PF06113_consen   53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSKLPSLVNWDPS  108 (333)
T ss_pred             cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhhcchhhcCCCC
Confidence            45666666      599999999999999999999999997 445899755      78776

BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=84.19  E-value=5.6  Score=32.38  Aligned_cols=55  Identities=24%  Similarity=0.344  Sum_probs=36.3

Q ss_pred             HHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCC--CCCCCEEEEEEeeCCCCCCCCCee
Q 048648           57 WMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGT--LFDGGIFKLTLKFTKEYPVKPPVV  112 (182)
Q Consensus        57 L~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~t--pY~gg~f~~~i~fp~~YP~~pP~v  112 (182)
                      ..+|+..|....+.     ...++..+.+.|.--.|.  -|.| .+.+.+.++++||..+|.+
T Consensus         7 Qe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli   68 (215)
T KOG4018|consen    7 QEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI   68 (215)
T ss_pred             HHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence            34566666665555     334444477777632222  2223 7899999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	182
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		3e-28
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-26
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-26
1jas_A	152	Hsubc2b Length = 152		3e-26
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-25
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-12
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		1e-11
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		1e-11
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-11
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		3e-11
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		8e-11
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-10
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		1e-10
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		1e-10
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-10
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-10
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		1e-10
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		1e-10
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		1e-10
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-10
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-10
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		3e-10
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-10
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		3e-10
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-10
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		9e-10
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-09
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-09
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-09
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		3e-09
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		6e-09
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		6e-09
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		9e-09
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-08
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		2e-08
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-08
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-08
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-08
3jvz_A	146	E2~ubiquitin-Hect Length = 146		3e-08
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-08
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-08
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-08
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-08
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-08
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-08
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-08
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-08
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-08
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		4e-08
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-08
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		4e-08
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		4e-08
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-08
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		5e-08
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-08
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-07
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-07
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-07
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		2e-07
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		2e-07
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-07
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		4e-07
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		6e-07
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-06
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-06
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-06
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		3e-06
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		4e-06
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		4e-06
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		4e-06
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		4e-06
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		5e-06
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		3e-05
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		3e-05
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-05
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		3e-05
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-05
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		4e-05
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		8e-05
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		1e-04
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		1e-04
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-04
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		2e-04
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-04
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		4e-04

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 18/142 (12%)
Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P      P D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129
Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + +VE SW A
Sbjct: 130 YSESKREYNRRVRDVVEQSWTA 151

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD K+LQ+  P      P +D+I+   AII G   T F+ G FKL+L+FT+EYP KPP 
Sbjct: 13  MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 72
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV AI  +IQ +L +PN  S AN  AA +
Sbjct: 73  VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 132
Query: 160 LTGGRIDYYKKAQRIVELSW 179
               R +Y K+ Q+IVE SW
Sbjct: 133 YQENRREYEKRVQQIVEQSW 152

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD K+LQ+  P      P +D+I+   AII G   T F+ G FKL+L+FT+EYP KPP 
Sbjct: 10  MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV AI  +IQ +L +PN  S AN  AA +
Sbjct: 70  VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 129
Query: 160 LTGGRIDYYKKAQRIVELSW 179
               R +Y K+ Q+IVE SW
Sbjct: 130 YQENRREYEKRVQQIVEQSW 149

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58  MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQ+  P      P +++IM  NA+I G  GT F+ G FKL ++F++EYP KPP 
Sbjct: 10  MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W+  YDV +I  +IQ +L +PN  S AN QAA +
Sbjct: 70  VRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129
Query: 160 LTGGRIDYYKKAQRIVELSW 179
               + +Y K+   IVE SW
Sbjct: 130 YQENKREYEKRVSAIVEQSW 149

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 18/144 (12%)
Query: 55  QQWMRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
           ++ MRD KR+++ APPG       D++M+ NA+I+G   T ++ G F+L L+F +EYP K
Sbjct: 7   RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 109 PPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
           PP V F+S MFH N         D+   +W   YDV +I  +IQ +  DPN  S AN +A
Sbjct: 67  PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 157 ATMLTGGRIDYYKKAQRIVELSWK 180
           AT+    +  Y K+ +  VE SW+
Sbjct: 127 ATLFKDHKSQYVKRVKETVEKSWE 150

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 53  QLQQWMRDLKRLQQGAP-----PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           +LQQ +R L  L  G P     P  D++    A + G   T+++   +KLTL+F  +YP 
Sbjct: 13  RLQQELRTL--LMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 108 KPPVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           KPPVV F +  +H N               W + YDV  I  ++Q +LG+PN  S  N Q
Sbjct: 71  KPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130
Query: 156 AATM 159
           AA M
Sbjct: 131 AADM 134

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH------- 120
           A P  +D+M     I GL  +++ G +F+LT+ FT EY   PPVV F++  FH       
Sbjct: 45  AKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHT 104
Query: 121 --------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLT 161
                    N  KWN++Y + +I   +Q+ML +P L +  N +AA +L 
Sbjct: 105 GQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILV 153

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 50  LKCQLQQWMRDLKRLQQGAP----PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEY 105
           L+ + +QW RD        P     G  D+M     I G   T ++GG++KLT+ F +EY
Sbjct: 15  LQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEY 74
Query: 106 PVKPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSA 151
           P +PP   F   +FH N              +  W     +  I   IQ +L DPN+ S 
Sbjct: 75  PTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASP 134
Query: 152 ANQQAATMLTGGRIDYYKKAQ 172
           A  +A TM    +++Y K+ +
Sbjct: 135 AQTEAYTMFKKDKVEYEKRVR 155

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 72  DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
           D+DI     +++G   TL++GG FK  L F ++YP KPP + F+S ++H N         
Sbjct: 30  DNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCI 89
Query: 123 -------DLKWNSD---------YDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRID 166
                  D KW  +         + V  I  ++  ML DPN  S AN  AA M      +
Sbjct: 90  SILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAE 149
Query: 167 YYKKAQRIVELS 178
           + KK  + V  S
Sbjct: 150 FKKKVAQCVRRS 161

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+ S A  +A T+    R++Y K+ +
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+ + A  +A T+    R++Y K+ +
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 33  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 93  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 92  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 34  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 94  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 92  VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 37  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 97  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH N      
Sbjct: 32  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 92  VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 69  PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH-------- 120
           P G  ++M     I G  GT ++GG+FKL + F  +YP  PP   F   +FH        
Sbjct: 35  PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 121 ------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                   D  W     +  I   IQ +L +PN+   A  +A T+    R++Y K+ +
Sbjct: 95  VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54  LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
           L++ M + K+L    P G       +++     A+I+G   T F+ G+F   L F  +YP
Sbjct: 9   LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
           + PP + F   MFH N                           +W+    V  I  ++  
Sbjct: 69  LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 128
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           ML +PN  S AN  A+ M    R  +YK A++IV+ S
Sbjct: 129 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 165

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54  LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
           L++ M + K+L    P G       +++     A+I+G   T F+ G+F   L F  +YP
Sbjct: 5   LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
           + PP + F   MFH N                           +W+    V  I  ++  
Sbjct: 65  LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 124
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           ML +PN  S AN  A+ M    R  +YK A++IV+ S
Sbjct: 125 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54  LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
           L++ M + K+L    P G       +++     A+I+G   T F+ G+F   L F  +YP
Sbjct: 8   LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
           + PP + F   MFH N                           +W+    V  I  ++  
Sbjct: 68  LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 127
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           ML +PN  S AN  A+ M    R  +YK A++IV+ S
Sbjct: 128 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 164

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54  LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
           L++ M + K+L    P G       +++     A+I+G   T F+ G+F   L F  +YP
Sbjct: 11  LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
           + PP + F   MFH N                           +W+    V  I  ++  
Sbjct: 71  LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 130
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           ML +PN  S AN  A+ M    R  +YK A++IV+ S
Sbjct: 131 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 167

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 62  KRLQQ-------------GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
           KRLQQ              A P  D++      I G  GT+++   +KL+L+F   YP  
Sbjct: 33  KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 109 PPVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
            P V F++  +H N              KW++ YDV  I  +IQ +LG+PN+ S  N  A
Sbjct: 93  APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 157 ATM 159
           A +
Sbjct: 153 AEL 155

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 70  PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------- 122
           P ++D+      I G  GT + GG+F++ L   K++P  PP   F++ +FH N       
Sbjct: 37  PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEI 96
Query: 123 -----DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177
                   W ++  +  +  TI+ +L  PN  SA N++A  +L     +Y  +A+ + E+
Sbjct: 97  CVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 156

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 72  DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
           D+D+     +I+G   TL++GG+FK  L F K+YP++PP + F++ ++H N         
Sbjct: 44  DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCI 103
Query: 123 ----------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRID 166
                           + +W   + V  I  ++  ML DPN  S AN  AA      R  
Sbjct: 104 SILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNG 163
Query: 167 YYKK 170
            +K+
Sbjct: 164 EFKR 167

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 32/154 (20%)
Query: 51  KCQLQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTK 103
           K   ++ +++L++L + +PPG       +++I + + +I G   T +  G+F   L+F K
Sbjct: 3   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 104 EYPVKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFAT 138
           +YP+ PP + F   + H N                         + +W+    V  I  +
Sbjct: 63  DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 122
Query: 139 IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
           +  ML +PN+ S AN  A  +    R ++ ++ +
Sbjct: 123 VMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 15/110 (13%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++Q+ ++DL+R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 10  RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           P V F + ++H N         D+   +W+    V  +  +I  +L DPN
Sbjct: 70  PKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 119

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 71  GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------- 122
           G  D+    A I G  GT + GG++ +T+++  EYP KPP V F +G +H N        
Sbjct: 34  GSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC 93
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKK 170
                 D  W     +  I   +Q +L  PN  S A + A    +  + +Y KK
Sbjct: 94  LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 147

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 71  GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------- 122
           G  D+    A I G  GT + GG++ +T+++  EYP KPP V F +G +H N        
Sbjct: 36  GSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC 95
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKK 170
                 D  W     +  I   +Q +L  PN  S A + A    +  + +Y KK
Sbjct: 96  LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 149

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 46  VGGGLKCQLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFT 102
           +G  LK ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F 
Sbjct: 1   LGSALK-RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 103 KEYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYS 150
            +YP KPP V F + ++H N         D+   +W+    +  +  +I  +L DPN   
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 151 AANQQAATMLTGGRIDYYKKAQR 173
               + A +    R D Y +  R
Sbjct: 120 PLVPEIARIYKTDR-DKYNRISR 141

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 50  LKCQLQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTK 103
           L+  L++  ++L  LQ+  P      P  DD+    A I+G   + + GG+F LT+ F  
Sbjct: 5   LEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPT 64
Query: 104 EYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           +YP KPP + F + ++H N         D+   +W+    V  +  +I  +L DPN
Sbjct: 65  DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 120

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++Q+ ++DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 8   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 68  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 128 RIYKTDRERYNQLARE 143

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 127 RIYKTDREKYNRIARE 142

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++Q+ + DL+R       A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           P + F + ++H N         D+   +W+    V  +  +I  +L DPN
Sbjct: 67  PKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 116

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 65  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 125 RIYKTDREKYNRIARE 140

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 4   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 64  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 124 RIYKTDREKYNRIARE 139

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 127 RIYKTDREKYNRIARE 142

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 10  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 70  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 129
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 130 RIYKTDREKYNRIARE 145

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 15  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 75  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 135 RIYQTDREKYNRIARE 150

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 8   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 68  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 128 RIYKTDREKYNRIARE 143

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++Q+ + DL+R       A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 23  RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           P + F + ++H N         D+   +W+    V  +  +I  +L DPN
Sbjct: 83  PKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 47  GGGLKCQLQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLK 100
            G     L++  ++L  LQ+  P      P  DD+    A I+G   + + GG+F LT+ 
Sbjct: 2   AGSGSMALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVH 61
Query: 101 FTKEYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           F  +YP KPP + F + ++H N         D+   +W+    V  +  +I  +L DPN
Sbjct: 62  FPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 83  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 143 RIYKTDREKYNRIARE 158

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N              +W+    +  +  +I  +L DPN       + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 127 RIYKTDREKYNRIARE 142

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 83  PKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 143 RIYKTDREKYNRIARE 158

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 4   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 64  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R D Y +  R
Sbjct: 124 RIYKTDR-DKYNRISR 138

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 15  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 75  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R D Y +  R
Sbjct: 135 RIYKTDR-DKYNRISR 149

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN
Sbjct: 67  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 5   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 65  PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R D Y +  R
Sbjct: 125 RIYKTDR-DKYNRISR 139

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W     +  +  +I  +L DPN       + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 127 RIYKTDREKYNRIARE 142

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 13  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 73  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 132
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R D Y +  R
Sbjct: 133 RIYKTDR-DKYNRISR 147

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 54  LQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           +++  ++L+ +QQ  P      P  DDI    A I G   + + GG+F L + F  +YP 
Sbjct: 6   MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           K P V F++ ++H N         D+   +W+    +  +  +I  +L DPN     + +
Sbjct: 66  KAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 156 AATMLTGGRIDYYKKAQR 173
            A +L   +  +   A+ 
Sbjct: 126 VANVLRANKKQFEDTARE 143

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A  +G   + + GG+F LT+ F  +YP KP
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 67  PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 127 RIYKTDREKYNRIARE 142

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 48  GGLKCQLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKE 104
           G LK ++ + + DL +       A P  DD+    A I+G   + + GG+F L + F  +
Sbjct: 21  GALK-RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD 79
Query: 105 YPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAA 152
           YP KPP V F + ++H N         D+   +W+    +  +  +I  +L DPN     
Sbjct: 80  YPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPL 139
Query: 153 NQQAATMLTGGRIDYYKKAQR 173
             + A +    R+ Y + A+ 
Sbjct: 140 VPEIAHLYKSDRMRYDQTARE 160

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 67  GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN---- 122
            A P  D+I    + I+G  G++++GG+F L + FT EYP KPP V F + ++H N    
Sbjct: 69  SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ 128
Query: 123 -----DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
                D+    W+    +  +  +I  +L D N         AT     R ++ + A++
Sbjct: 129 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 187

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 82  IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------------------- 122
           I G   T ++GG FK  LKF  +YP  PP   F++ M+H N                   
Sbjct: 41  IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 100
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
                   +WN   +V  I  ++  +L +PN +S AN  A+ M
Sbjct: 101 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 143

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 82  IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------------------- 122
           I G   T ++GG FK  LKF  +YP  PP   F++ M+H N                   
Sbjct: 44  IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 103
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
                   +WN   +V  I  ++  +L +PN +S AN  A+ M
Sbjct: 104 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 146

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL R    Q  A P  DD+    A I+G   + + GG+F LT+ F  +YP KP
Sbjct: 5   RIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           P V F + ++H           D+   +W+    +  +  +I  +L DPN       + A
Sbjct: 65  PKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
            +    R  Y + A+ 
Sbjct: 125 RIYKTDREKYNRIARE 140

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 54  LQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           L++  R+L  L +  P      P  DD+    A I+G   + + GG+F L++ F  +YP 
Sbjct: 3   LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           KPP V F + ++H N         D+   +W+    +  +  +I  +L DPN
Sbjct: 63  KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPN 114

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 24/112 (21%)
Query: 59  RDLKRLQQGAPPG-----DDDIM--LRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           R+L  L    PPG     D D M  LR A I+G   T ++ G+FKL +   + YP +PP 
Sbjct: 11  RELHMLATEPPPGITCWQDKDQMDDLR-AQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 69
Query: 112 VPFVSGMFHRN---------DL-------KWNSDYDVVAIFATIQLMLGDPN 147
           + F++ ++H N         D+        W    ++  +  +IQL++ +PN
Sbjct: 70  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 121

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 59  RDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
           ++ + L    PPG       ++    N +I G  GT ++GG +KL L   ++YP++PP V
Sbjct: 8   KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
            F++ ++H N         D+   KW+    +  +  +IQ +L  P      + + A   
Sbjct: 68  RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
Query: 161 TGGRID 166
              + D
Sbjct: 128 KQDKND 133

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 59  RDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
           ++ + L    PPG       ++    N +I G  GT ++GG +KL L   ++YP++PP V
Sbjct: 8   KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
            F++ ++H N         D+   KW+    +  +  +IQ +L  P      + + A   
Sbjct: 68  RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
Query: 161 TGGRID 166
              + D
Sbjct: 128 KQDKND 133

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 67  GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN---- 122
            A P  D+I    + I+G  G++++GG+F L + F+ +YP KPP V F + ++H N    
Sbjct: 24  SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ 83
Query: 123 -----DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
                D+    W+    +  +  +I  +L D N         AT     R ++ + A++
Sbjct: 84  GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 142

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P + +    + +I G   + F+GG FKL L   +EYP+  P V F++ ++H N     
Sbjct: 28  AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 87
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
               D+   KW+    +  +  +IQ +L  PN
Sbjct: 88  RICLDILKDKWSPALQIRTVLLSIQALLSAPN 119

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P + +    + +I G   + F+GG FKL L   +EYP+  P V F++ ++H N     
Sbjct: 25  AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 84
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
               D+   KW+    +  +  +IQ +L  PN
Sbjct: 85  RICLDILKDKWSPALQIRTVLLSIQALLSAPN 116

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P + +    + +I G   + F+GG FKL L   +EYP+  P V F++ ++H N     
Sbjct: 23  AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 82
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
               D+   KW+    +  +  +IQ +L  PN
Sbjct: 83  RICLDILKDKWSPALQIRTVLLSIQALLSAPN 114

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P + +    + +I G   + F+GG FKL L   +EYP+  P V F++ ++H N     
Sbjct: 27  AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 86
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
               D+   KW+    +  +  +IQ +L  PN
Sbjct: 87  RICLDILKDKWSPALQIRTVLLSIQALLSAPN 118

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P + +    + +I G   + F+GG FKL L   +EYP+  P V F++ ++H N     
Sbjct: 30  AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 89
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
               D+   KW+    +  +  +IQ +L  PN
Sbjct: 90  RICLDILKDKWSPALQIRTVLLSIQALLSAPN 121

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 53  QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
           ++ + + DL+R       A P  DD+    A I+G   + + GG+F L++ F  +YP KP
Sbjct: 6   RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKP 65
Query: 110 PVVPFVSGMFHRN 122
           P + F + ++H N
Sbjct: 66  PKISFTTKIYHPN 78

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 84  GLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------------DLKWNSDY 130
           G  GT ++GG++K+ +    +YP K P + F++ +FH N             +  W + Y
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 131 DVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVE 176
           D+  IF + +  +L  PN     N  AA M      +Y +K +  ++
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQ 165

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P DD++      I G   + ++ GIF+L L    +YP++ P V F++ ++H N     
Sbjct: 27  AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 86
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
                     W+    +  +  +IQ +L  PN
Sbjct: 87  RICLDVLKTNWSPALQIRTVLLSIQALLASPN 118

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 74  DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----------D 123
           DI      I G  GT ++GG F L +    +YP  PP + FV+ ++H N          D
Sbjct: 73  DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 124 L---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
           +   +W+    +     +IQ ML DP      + + A M+
Sbjct: 133 ILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P DD++      I G   + ++ GIF+L L    +YP++ P V F++ ++H N     
Sbjct: 25  AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 84
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
                     W+    +  +  +IQ +L  PN
Sbjct: 85  RICLDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A P DD++      I G   + ++ GIF+L L    +YP++ P V F++ ++H N     
Sbjct: 25  AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 84
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
                     W+    +  +  +IQ +L  PN
Sbjct: 85  RISLDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 72  DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
           D D+M       G  GT ++GGI+K+ +    +YP   P + F++ + H N         
Sbjct: 30  DFDVMFH-----GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVC 84
Query: 123 ----DLKWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177
               +  W   Y +V +F   +  +L  PN     N  AA++L   +  Y +K +  V+L
Sbjct: 85  LDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKL 144

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 81  IIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----------DL---KWN 127
            I G  GT ++GG F L +    +YP  PP + FV+ ++H N          D+   +W+
Sbjct: 58  FIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWS 117
Query: 128 SDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKA 171
               +     +IQ +L DP      + + A M       + K A
Sbjct: 118 PALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTA 161

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 58  MRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++L+ LQ+  PP        D ++++ +A+++      +    F L + F  EYP KPP
Sbjct: 7   VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLP-DQPPYHLKAFNLRISFPPEYPFKPP 65
Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           ++ F + ++H N                W        +   + +++  PN+        A
Sbjct: 66  MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 125
Query: 158 TMLTGGRIDYYKKAQRIV 175
            +LT     + K A+   
Sbjct: 126 DLLTQNPELFRKNAEEFT 143

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 58  MRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++L+ LQ+  PP        D ++++ +A+++      +    F L + F  EYP KPP
Sbjct: 10  VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLP-DQPPYHLKAFNLRISFPPEYPFKPP 68
Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           ++ F + ++H N                W        +   + +++  PN+        A
Sbjct: 69  MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 128
Query: 158 TMLTGGRIDYYKKAQRIV 175
            +LT     + K A+   
Sbjct: 129 DLLTQNPELFRKNAEEFT 146

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH------- 120
           A P DD++      I G   + ++ GIF+L L    +YP++ P V F++ ++H       
Sbjct: 25  AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLG 84
Query: 121 RNDL-----KWNSDYDVVAIFATIQLMLGDPN 147
           R  L      W+    +  +  +IQ +L  PN
Sbjct: 85  RISLDVLKTNWSPALQIRTVLLSIQALLASPN 116

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 81  IIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-DLK-----------WNS 128
           +IV      ++ G     L F + YP++PP V  +  +FH N DLK           W+ 
Sbjct: 68  VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 129 DYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDY 167
             D+ +I   +  +  +PN     N+ AA +L  G  ++
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 166

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 73  DDIMLRN--AIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS----------GMFH 120
           DDI L N    I G  GT+F+  I+ LT+     YP  PP V F +          G   
Sbjct: 50  DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 109
Query: 121 RNDL----KWNSDYDVVAIFATI-QLMLGDPN 147
           +N+L     WN +Y +  I  ++ Q ML   N
Sbjct: 110 KNNLHILKNWNRNYTIETILISLRQEMLSSAN 141

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 73  DDIMLRN--AIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS----------GMFH 120
           DDI L N    I G  GT+F+  I+ LT+     YP  PP V F +          G   
Sbjct: 54  DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 113
Query: 121 RNDL----KWNSDYDVVAIFATI-QLMLGDPN 147
           +N+L     WN +Y +  I  ++ Q ML   N
Sbjct: 114 KNNLHILKNWNRNYTIETILISLRQEMLSSAN 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	5e-36
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	5e-36
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-34
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-32
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	8e-32
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	8e-32
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-31
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-31
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	9e-31
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-30
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-30
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	3e-30
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-29
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-29
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	8e-29
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	8e-29
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	9e-29
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	1e-28
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-28
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-28
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-28
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-28
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-28
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-27
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	3e-27
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	5e-27
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-26
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-26
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-26
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	3e-26
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	5e-26
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	7e-26
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	1e-25
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-25
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-25
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	4e-25
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	5e-25
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	7e-25
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-24
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	3e-24
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	4e-24
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	6e-24
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	6e-24
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	6e-24
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	7e-24
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-23
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	3e-22
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-20
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	1e-15
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-15

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  121 bits (307), Expect = 5e-36
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 18/142 (12%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KRLQQ  P G      D++IML NA+I G   T +DGG FKL+L+F+++YP KPP 
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V FVS MFH N         D+   +W+  YDV AI  +IQ +L DPN  S AN +AA M
Sbjct: 70  VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
            +  + +Y ++ + +VE SW A
Sbjct: 130 YSESKREYNRRVRDVVEQSWTA 151

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  122 bits (308), Expect = 5e-36
 Identities = 57/141 (40%), Positives = 82/141 (58%), Gaps = 18/141 (12%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KR+++ APPG       D++M+ NA+I+G   T ++ G F+L L+F +EYP KPP 
Sbjct: 10  MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPH 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N         D+   +W   YDV +I  +IQ +  DPN  S AN +AAT+
Sbjct: 70  VKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL 129

Query: 160 LTGGRIDYYKKAQRIVELSWK 180
               +  Y K+ +  VE SW+
Sbjct: 130 FKDHKSQYVKRVKETVEKSWE 150

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  117 bits (295), Expect = 4e-34
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 21/139 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            RD   L++    G       +D+M     I GL  +++ G +F+LT+ FT EY   PPV
Sbjct: 29  HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPV 88

Query: 112 VPFVSGMFHRN---------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
           V F++  FH N                 KWN++Y + +I   +Q+ML +P L +  N +A
Sbjct: 89  VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 148

Query: 157 ATMLTGGRIDYYKKAQRIV 175
           A +L      Y    +   
Sbjct: 149 ARILVKDESLYRTILRLFN 167

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  113 bits (285), Expect = 1e-32
 Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 32/153 (20%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++L++L + +PPG       +++I + + +I G   T +  G+F   L+F K+YP+ PP
Sbjct: 10  LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 69

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F   + H N                         + +W+    V  I  ++  ML +
Sbjct: 70  KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 129

Query: 146 PNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           PN+ S AN  A  +    R ++ ++ +  +  S
Sbjct: 130 PNIESGANIDACILWRDNRPEFERQVKLSILKS 162

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  111 bits (280), Expect = 8e-32
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 25/146 (17%)

Query: 58  MRDLKRLQQGAPPG-----------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
             + K+ ++  P G             D+M     I G   T ++GG++KLT+ F +EYP
Sbjct: 16  QEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 75

Query: 107 VKPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAA 152
            +PP   F   +FH N              +  W     +  I   IQ +L DPN+ S A
Sbjct: 76  TRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPA 135

Query: 153 NQQAATMLTGGRIDYYKKAQRIVELS 178
             +A TM    +++Y K+ +     +
Sbjct: 136 QTEAYTMFKKDKVEYEKRVRAQAREN 161

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  111 bits (279), Expect = 8e-32
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 25/144 (17%)

Query: 58  MRDLKRLQQGAPPG-----------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
            ++ K  ++  P G             ++M     I G  GT ++GG+FKL + F  +YP
Sbjct: 13  AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72

Query: 107 VKPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAA 152
             PP   F   +FH N              D  W     +  I   IQ +L +PN+ S A
Sbjct: 73  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPA 132

Query: 153 NQQAATMLTGGRIDYYKKAQRIVE 176
             +A T+    R++Y K+ +   +
Sbjct: 133 QAEAYTIYCQNRVEYEKRVRAQAK 156

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  110 bits (278), Expect = 1e-31
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 19/141 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L+ L     PG       D++    A + G   T+++   +KLTL+F  +YP KPPV
Sbjct: 15  QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPV 74

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F +  +H N         D+    W + YDV  I  ++Q +LG+PN  S  N QAA M
Sbjct: 75  VKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADM 134

Query: 160 LTGGRIDYYKKAQRIVELSWK 180
            +  + +Y K      + +  
Sbjct: 135 WS-NQTEYKKVLHEKYKTAQS 154

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  110 bits (277), Expect = 2e-31
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 32/153 (20%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           M + K+L    P G       +++     A+I+G   T F+ G+F   L F  +YP+ PP
Sbjct: 9   MAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPP 68

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F   MFH N                           +W+    V  I  ++  ML +
Sbjct: 69  KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128

Query: 146 PNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
           PN  S AN  A+ M    R  +YK A++IV+ S
Sbjct: 129 PNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  108 bits (272), Expect = 9e-31
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 25/148 (16%)

Query: 58  MRDLKRLQQGAPPG-----------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
             + K+ ++  P G             D+    A I G  GT + GG++ +T+++  EYP
Sbjct: 10  QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69

Query: 107 VKPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAA 152
            KPP V F +G +H N              D  W     +  I   +Q +L  PN  S A
Sbjct: 70  SKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPA 129

Query: 153 NQQAATMLTGGRIDYYKKAQRIVELSWK 180
            + A    +  + +Y KK     +   K
Sbjct: 130 QEPAWRSFSRNKAEYDKKVLLQAKQYSK 157

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  108 bits (271), Expect = 2e-30
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 18/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            +++  L    P G      ++D+      I G  GT + GG+F++ L   K++P  PP 
Sbjct: 19  YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 78

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             F++ +FH N         ++    W ++  +  +  TI+ +L  PN  SA N++A  +
Sbjct: 79  GYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRL 138

Query: 160 LTGGRIDYYKKAQRIVEL 177
           L     +Y  +A+ + E+
Sbjct: 139 LLENYEEYAARARLLTEI 156

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  108 bits (272), Expect = 2e-30
 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 19/142 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  L      G       D++      I G  GT+++   +KL+L+F   YP   P 
Sbjct: 36  QQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPT 95

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++  +H N         D+   KW++ YDV  I  +IQ +LG+PN+ S  N  AA +
Sbjct: 96  VKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 155

Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
                  + K  Q        +
Sbjct: 156 WK-NPTAFKKYLQETYSKQVTS 176

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  108 bits (271), Expect = 3e-30
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 38/163 (23%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           + +LK LQ+    G       + D+      I G   T ++GG FK  LKF  +YP  PP
Sbjct: 13  LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 72

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
              F++ M+H N                           +WN   +V  I  ++  +L +
Sbjct: 73  AFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132

Query: 146 PNLYSAANQQAATMLTGGR------IDYYKKAQRIVELSWKAI 182
           PN +S AN  A+ M    +       +Y    ++ V  +    
Sbjct: 133 PNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDA 175

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  105 bits (264), Expect = 2e-29
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 32/145 (22%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
            R L  L +    G       D+D+     +I+G   TL++GG+FK  L F K+YP++PP
Sbjct: 23  RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F++ ++H N                         + +W   + V  I  ++  ML D
Sbjct: 83  KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142

Query: 146 PNLYSAANQQAATMLTGGRIDYYKK 170
           PN  S AN  AA      R   +K+
Sbjct: 143 PNGDSPANVDAAKEWREDRNGEFKR 167

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  104 bits (261), Expect = 4e-29
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L+ L +  P         DD+    A I+G   + + GG+F LT+ F  +YP KPP 
Sbjct: 10  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPK 69

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A +
Sbjct: 70  VAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI 129

Query: 160 LTGGRIDYYKKAQRIVE 176
               R  Y + A+   +
Sbjct: 130 YKTDRERYNQLAREWTQ 146

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  103 bits (260), Expect = 8e-29
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  L +  P         DD+    A I+G   + + GG+F LT+ F  +YP KPP 
Sbjct: 25  HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPK 84

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A +
Sbjct: 85  VAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI 144

Query: 160 LTGGRIDYYKKAQRIVE 176
               R  Y + A+   +
Sbjct: 145 YKTDREKYNRIAREWTQ 161

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  103 bits (259), Expect = 8e-29
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++ + L    PPG       ++    N +I G  GT ++GG +KL L   ++YP++PP 
Sbjct: 7   TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPK 66

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++ ++H N         D+   KW+    +  +  +IQ +L  P      + + A  
Sbjct: 67  VRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEH 126

Query: 160 LTGGRIDYYKKAQRIVEL 177
               + D    A++  ++
Sbjct: 127 FKQDKNDAEHVARQWNKI 144

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  104 bits (260), Expect = 9e-29
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)

Query: 58  MRDLKRLQQGAPPG--DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV 115
             D+ +L +          +        G  GT ++GG++K+ +    +YP K P + F+
Sbjct: 31  DTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90

Query: 116 SGMFHRN----------DL---KWNSDYDVVAIF-ATIQLMLGDPNLYSAANQQAATMLT 161
           + +FH N          D+    W + YD+  IF + +  +L  PN     N  AA M  
Sbjct: 91  NKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYL 150

Query: 162 GGRIDYYKKAQRIVELSWKA 181
               +Y +K +  ++     
Sbjct: 151 HRPEEYKQKIKEYIQKYATE 170

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  103 bits (259), Expect = 1e-28
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 22/146 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            R+L  L    PPG       D +    A I+G   T ++ G+FKL +   + YP +PP 
Sbjct: 10  KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 69

Query: 112 VPFVSGMFHRN---------DL-------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           + F++ ++H N         D+        W    ++  +  +IQL++ +PN        
Sbjct: 70  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129

Query: 156 AATMLTGGRIDYYKKAQRIVELSWKA 181
            ++     +  + K A++  E   + 
Sbjct: 130 ISSEFKYNKPAFLKNARQWTEKHARQ 155

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  104 bits (262), Expect = 1e-28
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++LK ++            D +       I G  GT ++GG F L +    +YP  PP 
Sbjct: 29  QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPK 88

Query: 112 VPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
           + FV+ ++H N          D+   +W+    +     +IQ +L DP      + + A 
Sbjct: 89  IKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAK 148

Query: 159 MLTGGRIDYYKKAQRIVELSWKA 181
           M       + K A    +     
Sbjct: 149 MYKENHALFVKTASVWTKTFATG 171

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  103 bits (258), Expect = 1e-28
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 18/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           +++ +RL     PG      + +    + +I G   + F+GG FKL L   +EYP+  P 
Sbjct: 11  IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 70

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++ ++H N         D+   KW+    +  +  +IQ +L  PN         A  
Sbjct: 71  VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 130

Query: 160 LTGGRIDYYKKAQRIVEL 177
                    + A+    L
Sbjct: 131 WKTNEAQAIETARAWTRL 148

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  103 bits (258), Expect = 2e-28
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  L +  P         DD+    A I+G   + + GG+F L + F  +YP KPP 
Sbjct: 27  NKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPK 86

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A +
Sbjct: 87  VNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHL 146

Query: 160 LTGGRIDYYKKAQRIVE 176
               R+ Y + A+   +
Sbjct: 147 YKSDRMRYDQTAREWSQ 163

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  102 bits (257), Expect = 2e-28
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 18/133 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           +++ ++L     PG      DD++      I G   + ++ GIF+L L    +YP++ P 
Sbjct: 11  IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPK 70

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++ ++H N         D+    W+    +  +  +IQ +L  PN         A  
Sbjct: 71  VRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAED 130

Query: 160 LTGGRIDYYKKAQ 172
                     KA+
Sbjct: 131 WIKNEQGAKAKAR 143

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  103 bits (259), Expect = 2e-28
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  +    PP        D+I    + I+G  G++++GG+F L + FT EYP KPP 
Sbjct: 54  QKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPK 113

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N         D+    W+    +  +  +I  +L D N         AT 
Sbjct: 114 VTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQ 173

Query: 160 LTGGRIDYYKKAQ 172
               R ++ + A+
Sbjct: 174 YMTNRAEHDRMAR 186

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  100 bits (250), Expect = 2e-27
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 21/143 (14%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++L+ LQ+  PP        D ++++ +A++       +    F L + F  EYP KPP
Sbjct: 10  VKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPP 68

Query: 111 VVPFVSGMFHRN---------DL----KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
           ++ F + ++H N          +     W        +   + +++  PN+        A
Sbjct: 69  MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 128

Query: 158 TMLTGGRIDYYKKAQRIVELSWK 180
            +LT     + K A+        
Sbjct: 129 DLLTQNPELFRKNAEEFTLRFGV 151

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 99.6 bits (249), Expect = 3e-27
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 20/143 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            R      +    G      +      + +  G  GT ++GGI+K+ +    +YP   P 
Sbjct: 5   TRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPS 64

Query: 112 VPFVSGMFHRN----------DL---KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAA 157
           + F++ + H N          D+    W   Y +V +F   +  +L  PN     N  AA
Sbjct: 65  IGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAA 124

Query: 158 TMLTGGRIDYYKKAQRIVELSWK 180
           ++L   +  Y +K +  V+L   
Sbjct: 125 SLLMKDKNIYEEKVKEYVKLYAS 147

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 98.9 bits (247), Expect = 5e-27
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 20/140 (14%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           M++++ ++             + DI       +G  GT ++GG F + ++   EYP KPP
Sbjct: 7   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 66

Query: 111 VVPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
            + F + ++H N          D+    W+    + +   ++Q +L  P      + + A
Sbjct: 67  KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVA 126

Query: 158 TMLTGGRIDYYKKAQRIVEL 177
                 R  + K A     L
Sbjct: 127 QHYLRDRESFNKTAALWTRL 146

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 97.7 bits (244), Expect = 2e-26
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 58  MRDLKRLQQG---------APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
            R+ K + +              D++       I G   T ++GG ++L +K  + YP  
Sbjct: 14  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73

Query: 109 PPVVPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           PP V F++ ++H N          D+   +W +   +  +  ++Q +L         +  
Sbjct: 74  PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 133

Query: 156 AATMLTGGRIDYYKKAQ 172
            A         + + A+
Sbjct: 134 VANQYKQNPEMFKQTAR 150

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 98.7 bits (246), Expect = 3e-26
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           M++++ ++             + DI       +G  GT ++GG F + ++   EYP KPP
Sbjct: 8   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 67

Query: 111 VVPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
            + F + ++H N          D+    W+    + +   ++Q +L  P      + + A
Sbjct: 68  KMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVA 127

Query: 158 TMLTGGRIDYYKKAQ 172
                 R  + K A 
Sbjct: 128 QHYLRDRESFNKTAA 142

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 21/143 (14%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           M++L+ +++            + +++    +I       +D G F++ + F  EYP KPP
Sbjct: 8   MKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPP 66

Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
            + F + ++H N                W        +  ++  ++ DP          A
Sbjct: 67  KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLA 126

Query: 158 TMLTGGRIDYYKKAQRIVELSWK 180
              +  R  + K A+   +   +
Sbjct: 127 EEYSKDRKKFCKNAEEFTKKYGE 149

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 97.9 bits (244), Expect = 3e-26
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNA----IIVGLGGTLFDGGIFKLTLKFTKEYPV 107
            RDL  L              D      +    +IV      ++ G     L F + YP+
Sbjct: 35  KRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPI 94

Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           +PP V  +  +FH N         ++    W+   D+ +I   +  +  +PN     N+ 
Sbjct: 95  EPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKD 154

Query: 156 AATMLTGGRIDYYKKAQRIVELSW 179
           AA +L  G  ++ +  +  +    
Sbjct: 155 AAKLLCEGEKEFAEAVRLTMSGGS 178

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 96.3 bits (240), Expect = 5e-26
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 25/126 (19%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L+R Q+G             DDI L   +  I G  GT+F+  I+ LT+     YP 
Sbjct: 27  LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPD 86

Query: 108 KPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATI-QLMLGDPNLYSAA 152
            PP V F + +                     WN +Y +  I  ++ Q ML   N     
Sbjct: 87  SPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQ 146

Query: 153 NQQAAT 158
             +   
Sbjct: 147 PNEGEV 152

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 97.5 bits (243), Expect = 7e-26
 Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 54  LQQWMRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           +++  +++ + ++ +         D++       I G   T ++GG ++L +K  + YP 
Sbjct: 10  IKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPF 69

Query: 108 KPPVVPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQ 154
            PP V F++ ++H N          D+   +W +   +  +  ++Q +L         + 
Sbjct: 70  NPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDA 129

Query: 155 QAATMLTGGRIDYYKKAQ 172
             A         + + A+
Sbjct: 130 VVANQYKQNPEMFKQTAR 147

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 95.9 bits (239), Expect = 1e-25
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 58  MRDLKRLQQGAPPG-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
            +D+  L             DD++    +I       +  G F  + K  + YP  PP V
Sbjct: 32  QKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKV 90

Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
              + ++H N         ++    W     + +I   +Q +  +PN     N++AA +L
Sbjct: 91  KCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 150

Query: 161 TGGRIDYYKKAQRIVELSW 179
              R  + +  QR +   +
Sbjct: 151 QNNRRLFEQNVQRSMRGGY 169

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 95.4 bits (238), Expect = 1e-25
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 58  MRDLKRLQQGAPPG-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
            +D+  L             DD++    +I       +  G F  + K  + YP  PP V
Sbjct: 12  QKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKV 70

Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
              + ++H N         ++    W     + +I   +Q +  +PN     N++AA +L
Sbjct: 71  KCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL 130

Query: 161 TGGRIDYYKKAQRIVELSW 179
              R  + +  QR +   +
Sbjct: 131 QNNRRLFEQNVQRSMRGGY 149

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 94.7 bits (236), Expect = 4e-25
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 16/135 (11%)

Query: 58  MRDLKRLQQGAPPG--DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV 115
             D  RL          D +        G  GT ++ G + L ++   +YP K P + F 
Sbjct: 18  EMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC 77

Query: 116 SGMFHRN----------DL---KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLT 161
           + + H N          D+    W   Y +  IF   +  +L  PN     N QAA +L 
Sbjct: 78  NRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137

Query: 162 GGRIDYYKKAQRIVE 176
             R+ +    +  V 
Sbjct: 138 ADRVGFDALLREHVS 152

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 96.5 bits (240), Expect = 4e-25
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 22/137 (16%)

Query: 58  MRDLKRLQQGAP---------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
            R+ K + +              D++       I G   T ++GG ++L +K  + YP  
Sbjct: 63  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122

Query: 109 PPVVPFVSGMFHRN----------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           PP V F++ ++H N          D+   +W +   +  +  ++Q +L         +  
Sbjct: 123 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 182

Query: 156 AATMLTGGRIDYYKKAQ 172
            A         + + A+
Sbjct: 183 VANQYKQNPEMFKQTAR 199

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 94.8 bits (236), Expect = 5e-25
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
           A     DI      I G  GT ++GG F L +    +YP  PP + FV+ ++H N     
Sbjct: 67  AQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 126

Query: 123 -----DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
                D+   +W+    +     +IQ ML DP      + + A M+      + + A+
Sbjct: 127 GAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 92.7 bits (231), Expect = 7e-25
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 24/126 (19%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L++ ++G  P          DDI +   N  I+G   +  +  I+ L++     YP 
Sbjct: 12  LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 71

Query: 108 KPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAAN 153
            PP V F+S +                     W   Y +  +   ++  +  P       
Sbjct: 72  SPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQ 131

Query: 154 QQAATM 159
            +    
Sbjct: 132 PKEGET 137

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 92.9 bits (231), Expect = 2e-24
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 68  APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-SGMFHRN---- 122
            P  + D+    AII G   T ++   F++ ++    YP+ PP + F+ + + H N    
Sbjct: 40  NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSA 99

Query: 123 ------DL----KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML-TGGRIDYYKKA 171
                 ++    +W   +D++     +  +L +P   S  +     ++  G    Y    
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV 159

Query: 172 QRIVELSWKA 181
           +  +    + 
Sbjct: 160 KYFLAERERI 169

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 92.0 bits (229), Expect = 3e-24
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 25/144 (17%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           ++++  L+   P        D + +    + V      + GG F+   +    Y + PP 
Sbjct: 20  VKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPK 79

Query: 112 VPFVSGMFHRN------------------DLKWNSDYDVVAIFATIQLMLGD-PNLYSAA 152
           V  ++ ++H N                     W     +  +   +  +  D  N     
Sbjct: 80  VKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPL 139

Query: 153 NQQAATMLTGGRIDYYKKAQRIVE 176
           N +AA      + D+  K    ++
Sbjct: 140 NIEAAEHHLRDKEDFRNKVDDYIK 163

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 91.7 bits (228), Expect = 4e-24
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L+  Q+G   G        D+D+ L     +I+G   T+++  I+ L ++   +YP 
Sbjct: 31  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 90

Query: 108 KPPVVPFVSGMFHRN-------------DL--KWNSDYDVVAIFATIQLMLGDPNLYSAA 152
            PP V FV+ +                  +  KW + Y +  +   ++ ++         
Sbjct: 91  APPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP 150

Query: 153 NQQAATM 159
                  
Sbjct: 151 QPPEGQC 157

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 91.4 bits (227), Expect = 6e-24
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 25/127 (19%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLRN--AIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L+  Q+G   G        D+D+ L     +I+G   T+++  I+ L ++   +YP 
Sbjct: 41  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 100

Query: 108 KPPVVPFVSGMFHRN-------------DL--KWNSDYDVVAIFATIQLMLGDPNLYSAA 152
            PP V FV+ +                  +  KW + Y +  +   ++ ++         
Sbjct: 101 APPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP 160

Query: 153 NQQAATM 159
                  
Sbjct: 161 QPPEGQC 167

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 90.0 bits (224), Expect = 6e-24
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 19/109 (17%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L       P         ++I +     VGL  T++   ++KL + F  +YP+KPP+
Sbjct: 12  QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPI 71

Query: 112 VPFVS-GMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           V F+     H +          L    +N    +  +  +I  ML    
Sbjct: 72  VYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAK 120

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 90.4 bits (225), Expect = 6e-24
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L    +  P          +I +     VGL  T++   ++K+ + F   YP+KPP+
Sbjct: 26  QKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPI 85

Query: 112 VPFVS-GMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
           V F+     H +          +    +N    +  +  +I  ML    
Sbjct: 86  VYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAK 134

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 95.8 bits (238), Expect = 7e-24
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 18/140 (12%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  L +  P         DD+    A I+G   + + GG+F LT+ F  +YP KPP 
Sbjct: 9   HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPK 68

Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N         D+   +W+    +  +  +I  +L DPN       + A +
Sbjct: 69  VAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI 128

Query: 160 LTGGRIDYYKKAQRIVELSW 179
               R  Y + A+   +   
Sbjct: 129 YKTDREKYNRIAREWTQKYA 148

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 91.0 bits (226), Expect = 1e-23
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 35/151 (23%)

Query: 58  MRDLKRLQQ------------------GAPPGDDDIMLRNAIIVGLGGTLFD--GGIFKL 97
           ++DLK L +                        D I      +     +++   G  ++L
Sbjct: 14  IKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQL 73

Query: 98  TLKFTKEYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLML-- 143
           ++ F+ +YP +PP V FV+ ++             +    W  D     +   +   +  
Sbjct: 74  SVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFS 133

Query: 144 -GDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
                     N +A   L     D+  + +R
Sbjct: 134 QYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 87.5 bits (217), Expect = 3e-22
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 22/145 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            +D  R+++   P         +I+  + ++ G   T ++GG +   L F +E+P KPP 
Sbjct: 20  KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 79

Query: 112 VPFV--SGMFHRN--------DL---KWNSDYDVVAIFATIQLMLGDPN--LYSAANQQA 156
           +  +  +G F  N        D     WN  + V  I   +   + +    L S      
Sbjct: 80  IYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDF 139

Query: 157 ATM-LTGGRIDYYKKAQRIVELSWK 180
               L    + +  K +   EL  +
Sbjct: 140 TKRQLAVQSLAFNLKDKVFCELFPE 164

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 81.6 bits (202), Expect = 1e-20
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
            ++L  LQ   PPG         + I      + G  GTL++G  F+L  KF+  YP   
Sbjct: 28  QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 87

Query: 110 PVVPFVSGM--FHRN---------DL---KWNSDYDVVAIFATIQLML 143
           P V F       H +          +    W+    V ++  +I  ML
Sbjct: 88  PQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 135

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 72.0 bits (176), Expect = 1e-15
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 39/157 (24%)

Query: 58  MRDLKRLQQGAPPG----------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
            ++   L    P            ++ + +   +I G   T +  G F+  + F ++YP 
Sbjct: 82  AQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS 141

Query: 108 KPPVVPFVS-----GMFHRN-------------------DLKWNSD-YDVVAIFATIQLM 142
            PP+V   +       F+ N                   + KWN      + +  ++Q +
Sbjct: 142 SPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSL 201

Query: 143 LGDPNLY----SAANQQAATMLTGGRIDYYKKAQRIV 175
           +     Y         +     T    +Y    ++  
Sbjct: 202 ILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQAT 238

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 35/152 (23%)

Query: 58  MRDLKRLQQ---------GAPPGDDDIMLRNAIIVGLG-GTLFDGGI-----------FK 96
           M++L+ + +              +D +   +  +  +   +     +             
Sbjct: 33  MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 92

Query: 97  LTLKFTKEYPVKPPVVPFVSGMFHRN----------DL----KWNSDYDVVAIFATIQLM 142
           L   F   +P  PP V  V  +              +L     W+S Y + ++   I   
Sbjct: 93  LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 152

Query: 143 LGDPNLYSAANQQAATMLTGGRIDYYKKAQRI 174
           L                        Y    +I
Sbjct: 153 LVKGKARVQFGANKNQYNLARAQQSYNSIVQI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.98
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.97
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.96
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.96
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.83
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.56
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.38
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.06
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	97.05
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	96.36
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.08
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	95.72
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	95.14
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	94.98
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	93.63
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	92.34

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.2e-42  Score=266.90  Aligned_cols=132  Identities=24%  Similarity=0.487  Sum_probs=126.9

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      +..+.+||++|+++++++++.      .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            457789999999999998776      67899999999999999999999999999999999999999999999999999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      +            +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A           82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            9            899999999999999999999999999999999999999999999999999999963

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-42  Score=268.34  Aligned_cols=135  Identities=26%  Similarity=0.460  Sum_probs=128.0

Q ss_pred             cCCCCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           45 NVGGGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        45 ~~~~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      +...++..+.+||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++
T Consensus         6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   85 (158)
T 1zdn_A            6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI   85 (158)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence            44556778899999999999998776      788999999999999999999999999999999999999999999999


Q ss_pred             ccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          119 FHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       119 ~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                      |||||+            +|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        86 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           86 FHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             CCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999998            8999999999999999999999999999999999999999999999999999997

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-42  Score=267.67  Aligned_cols=130  Identities=23%  Similarity=0.407  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      .+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+ 
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK   84 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc
Confidence            4569999999999998766      778999999999999999999999999999999999999999999999999998 


Q ss_pred             -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                 +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             TCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence                       899999999999999999999999999999999999999999999999999999963

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-42  Score=268.39  Aligned_cols=131  Identities=42%  Similarity=0.763  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      ..+.+||++|+++|+++++.      .++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~   82 (169)
T 1ayz_A            3 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   82 (169)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence            35789999999999998776      678999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  .|+|+++|++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus        83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~  151 (169)
T 1ayz_A           83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  151 (169)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence                        799999999999999999999999999999999999999999999999999999964

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=4.2e-42  Score=263.60  Aligned_cols=130  Identities=26%  Similarity=0.478  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      ..+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   82 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence            45679999999999998766      668999999999999999999999999999999999999999999999999998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus        83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           83 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                        79999999999999999999999999999999999999999999999999999985

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=8.5e-42  Score=265.84  Aligned_cols=132  Identities=26%  Similarity=0.467  Sum_probs=126.5

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      ..+.+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus        16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn   95 (165)
T 2c4o_A           16 RGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   95 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence            4466889999999999998766      6789999999999999999999999999999999999999999999999999


Q ss_pred             cc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          123 DL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       123 I~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      |+            +|+|++||++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus        96 V~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           96 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            98            79999999999999999999999999999999999999999999999999999985

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=5.6e-42  Score=263.45  Aligned_cols=131  Identities=48%  Similarity=0.807  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      ..+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus         3 ~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (152)
T 2aak_A            3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY   82 (152)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence            46789999999999998776      678999999999999999999999999999999999999999999999999998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus        83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  151 (152)
T 2aak_A           83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA  151 (152)
T ss_dssp             TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence                        799999999999999999999999999999999999999999999999999999863

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=6.9e-42  Score=266.58  Aligned_cols=129  Identities=26%  Similarity=0.503  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      +.+.+||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~   99 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN   99 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence            45789999999999998766      778999999999999999999999999999999999999999999999999998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                                  +|+|++||++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||
T Consensus       100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A          100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence                        7999999999999999999999999999999999999999999999999999997

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-41  Score=265.37  Aligned_cols=132  Identities=23%  Similarity=0.451  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      ++.+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            467789999999999998766      77899999999999999999999999999999999999999999999999999


Q ss_pred             c----------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          124 L----------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       124 ~----------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      +                +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  155 (169)
T 1yh2_A           82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  155 (169)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence            8                599999999999999999999999999999999999999999999999999999963

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=7.3e-42  Score=265.74  Aligned_cols=133  Identities=28%  Similarity=0.461  Sum_probs=124.0

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCC------CCC-----CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecc
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPP------GDD-----DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS  116 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~------~~~-----~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t  116 (182)
                      ..+..+.+||++|+++|+++++.      .++     |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            45667889999999999999877      222     8999999999999999999999999999999999999999999


Q ss_pred             ccccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          117 GMFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       117 ~i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      +||||||+              +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||.
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence            99999998              39999999999999999999999999999999999999999999999999999984

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-41  Score=261.81  Aligned_cols=133  Identities=30%  Similarity=0.496  Sum_probs=125.4

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      .++..+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||
T Consensus         5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   84 (156)
T 2e2c_A            5 KERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP   84 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccC
Confidence            34456789999999999987665      677999999999999999999999999999999999999999999999999


Q ss_pred             Ccc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          122 NDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      ||+            +|+|++++++||.+|++||.+|++++|+|.+||.+| +|+++|.++||+|+++|+..
T Consensus        85 nv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~  155 (156)
T 2e2c_A           85 NVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD  155 (156)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred             CCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence            999            799999999999999999999999999999999999 89999999999999999863

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=2.5e-41  Score=261.63  Aligned_cols=132  Identities=18%  Similarity=0.336  Sum_probs=124.6

Q ss_pred             CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648           49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF  119 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  119 (182)
                      ++..+.+||++|+++|+++.   +.      .++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   84 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   84 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence            45578899999999999852   22      6789999999999999999999999999999999999999999999999


Q ss_pred             cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      ||||+             +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~  158 (159)
T 2bep_A           85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  158 (159)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence            99998             69999999999999999999999999999999999999999999999999999986

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=7.5e-42  Score=261.96  Aligned_cols=128  Identities=21%  Similarity=0.409  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHcCCCC------CCC-CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP------GDD-DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~------~~~-~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +.+||++|+++|+++++.      .++ |++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            469999999999998765      444 999999999999999999999999999999999999999999999999998 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence                        79999999999999999999999999999999999999999999999999999985

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.2e-41  Score=260.87  Aligned_cols=128  Identities=23%  Similarity=0.454  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      .+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+   
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   82 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   82 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence            48999999999998766      678999999999999999999999999999999999999999999999999998   


Q ss_pred             ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                               +|+|++|+++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus        83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           83 RICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             BBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             EEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence                     799999999999999999999999999999999999999999999999999999963

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=3.1e-41  Score=262.18  Aligned_cols=130  Identities=32%  Similarity=0.548  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      +.+.+||++|+++++++++.       +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            35789999999999998776       44599999999999999999999999999999999999999999999999999


Q ss_pred             c----------C---------------CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          124 L----------K---------------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       124 ~----------~---------------W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                      +          .               |+|++||++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++|
T Consensus        82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s  161 (164)
T 3h8k_A           82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS  161 (164)
T ss_dssp             CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            8          2               99999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 048648          179 WK  180 (182)
Q Consensus       179 a~  180 (182)
                      +.
T Consensus       162 ~~  163 (164)
T 3h8k_A          162 LG  163 (164)
T ss_dssp             HT
T ss_pred             hc
Confidence            74

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-41  Score=270.60  Aligned_cols=135  Identities=25%  Similarity=0.401  Sum_probs=122.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCC-------------C------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCC
Q 048648           47 GGGLKCQLQQWMRDLKRLQQGAP-------------P------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV  107 (182)
Q Consensus        47 ~~~~~~~~~RL~~El~~l~~~~~-------------~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~  107 (182)
                      ......+.+||++|+++|+++++             .      .++|++.|+++|.||+||||+||+|+|+|.||++||+
T Consensus        27 ~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~  106 (193)
T 2f4z_A           27 PRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY  106 (193)
T ss_dssp             -----CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence            34455678999999999999876             2      5689999999999999999999999999999999999


Q ss_pred             CCCeeeeccccccCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHH
Q 048648          108 KPPVVPFVSGMFHRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRI  174 (182)
Q Consensus       108 ~pP~v~f~t~i~HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~  174 (182)
                      +||+|+|.|+||||||+             +|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|
T Consensus       107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~  186 (193)
T 2f4z_A          107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW  186 (193)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999999999998             69999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 048648          175 VELSWKA  181 (182)
Q Consensus       175 ~~~~a~~  181 (182)
                      +++||++
T Consensus       187 t~~ya~~  193 (193)
T 2f4z_A          187 TETFAKE  193 (193)
T ss_dssp             HHHHCC-
T ss_pred             HHHHccC
Confidence            9999963

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-41  Score=262.46  Aligned_cols=131  Identities=26%  Similarity=0.550  Sum_probs=124.4

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      +..+.+||++|+++|+++++.       +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus         2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   81 (165)
T 2ucz_A            2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   81 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence            356789999999999998766       4579999999999999999999999999999999999999999999999999


Q ss_pred             cc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648          123 DL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL  177 (182)
Q Consensus       123 I~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~  177 (182)
                      |+                         +|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++
T Consensus        82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~  161 (165)
T 2ucz_A           82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  161 (165)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            98                         39999999999999999999999999999999999999999999999999999


Q ss_pred             Hhh
Q 048648          178 SWK  180 (182)
Q Consensus       178 ~a~  180 (182)
                      |+.
T Consensus       162 ~~~  164 (165)
T 2ucz_A          162 SLG  164 (165)
T ss_dssp             HTT
T ss_pred             Hhh
Confidence            975

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=4.8e-42  Score=264.67  Aligned_cols=130  Identities=22%  Similarity=0.403  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      .+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+ 
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            4569999999999998766      678999999999999999999999999999999999999999999999999998 


Q ss_pred             -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                 +|+|++++++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~  152 (155)
T 1jat_A           85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  152 (155)
T ss_dssp             TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence                       799999999999999999999999999999999999999999999999999999964

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=3.4e-41  Score=272.42  Aligned_cols=132  Identities=23%  Similarity=0.411  Sum_probs=126.4

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      ..+.+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus        20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   99 (216)
T 2pwq_A           20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN   99 (216)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence            3456789999999999998776      6789999999999999999999999999999999999999999999999999


Q ss_pred             cc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          123 DL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       123 I~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      |+             +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus       100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~  170 (216)
T 2pwq_A          100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT  170 (216)
T ss_dssp             BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            98             69999999999999999999999999999999999999999999999999999996

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=4.2e-41  Score=259.95  Aligned_cols=130  Identities=28%  Similarity=0.443  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------C-----CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------G-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF  119 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~-----~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  119 (182)
                      ..+.+||++|+++|+++++.      .     ++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|
T Consensus         3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (157)
T 2gjd_A            3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY   82 (157)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence            35779999999999998876      1     148999999999999999999999999999999999999999999999


Q ss_pred             cCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          120 HRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       120 HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      ||||+              +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus        83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99998              39999999999999999999999999999999999999999999999999999985

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=5.3e-41  Score=260.36  Aligned_cols=133  Identities=27%  Similarity=0.465  Sum_probs=125.0

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------C-----CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------G-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG  117 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~-----~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~  117 (182)
                      ++..+.+||++|+++|+++++.      .     ++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            4567889999999999998766      1     3689999999999999999999999999999999999999999999


Q ss_pred             cccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          118 MFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       118 i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      +|||||+              +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus        84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~  161 (161)
T 2grr_A           84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  161 (161)
T ss_dssp             CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred             cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence            9999998              499999999999999999999999999999999999999999999999999999863

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=7.8e-41  Score=267.83  Aligned_cols=133  Identities=19%  Similarity=0.340  Sum_probs=124.1

Q ss_pred             CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648           49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF  119 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  119 (182)
                      ++..+.+||++|+++|+++.   +.      .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   81 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   81 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence            34456899999999999863   22      6789999999999999999999999999999999999999999999999


Q ss_pred             cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      ||||+             +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~  156 (201)
T 3k9o_A           82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  156 (201)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            99998             799999999999999999999999999999999999999999999999999999964

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.1e-40  Score=265.71  Aligned_cols=130  Identities=25%  Similarity=0.445  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      +.+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~  126 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN  126 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence            56789999999999998766      778999999999999999999999999999999999999999999999999998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  +|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus       127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence                        79999999999999999999999999999999999999999999999999999984

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=2.8e-40  Score=257.57  Aligned_cols=134  Identities=14%  Similarity=0.262  Sum_probs=125.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           46 VGGGLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        46 ~~~~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      +....+.+.+||++|+++|+++++.       +++|++.|.++| ||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus         8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   86 (167)
T 3fn1_B            8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI   86 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred             CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence            3445568889999999999998776       567899999999 89999999999999999999999999999999999


Q ss_pred             ccCCcc------------------CCCCcccHHHHHHHHHHhhCC-CCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          119 FHRNDL------------------KWNSDYDVVAIFATIQLMLGD-PNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       119 ~HPnI~------------------~W~p~~tl~~il~~I~~ll~~-p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                      |||||+                  +|+|++|+++||.+|++||.+ |++++|+|.+||.+|++|+++|.++||+|+++||
T Consensus        87 ~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A  166 (167)
T 3fn1_B           87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA  166 (167)
T ss_dssp             CCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            999998                  299999999999999999999 7999999999999999999999999999999998


Q ss_pred             h
Q 048648          180 K  180 (182)
Q Consensus       180 ~  180 (182)
                      +
T Consensus       167 ~  167 (167)
T 3fn1_B          167 R  167 (167)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.9e-40  Score=255.62  Aligned_cols=129  Identities=21%  Similarity=0.432  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+.+||++|+++|+++++.       +++|++.|+++|. |+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            4679999999999998766       6789999999999 9999999999999999999999999999999999999997


Q ss_pred             -------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                   +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus        83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  152 (155)
T 1wzv_A           83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  152 (155)
T ss_dssp             TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                         799999999999999999999999999999999999999999999999999999974

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=7.7e-41  Score=257.27  Aligned_cols=129  Identities=24%  Similarity=0.436  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648           53 QLQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-----  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-----  124 (182)
                      +.+||++|+++++++...   .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+     
T Consensus         3 a~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~   82 (152)
T 2onu_A            3 SLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGS   82 (152)
T ss_dssp             CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCB
T ss_pred             HHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCe
Confidence            458999999999886544   678999999999999999999999999999999999999999999999999998     


Q ss_pred             --------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 --------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 --------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                              +|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        83 iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~  148 (152)
T 2onu_A           83 VCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK  148 (152)
T ss_dssp             BCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred             EecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence                    69999999999999 6899999999999999999999999999999999999999964

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-40  Score=260.41  Aligned_cols=131  Identities=27%  Similarity=0.428  Sum_probs=122.9

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      ++..+.+||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  106 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN  106 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence            4567889999999999997665      6679999999999999999999999999999999999999999999999999


Q ss_pred             cc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          123 DL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       123 I~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      |+            .|+|+++|++||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++.
T Consensus       107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~  175 (179)
T 1i7k_A          107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT  175 (179)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred             cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence            98            799999999999999999999999999999999999 9999999999999999874

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=1.1e-39  Score=269.03  Aligned_cols=133  Identities=19%  Similarity=0.340  Sum_probs=125.7

Q ss_pred             CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648           49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF  119 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  119 (182)
                      ++..+.+||++|+++|+++.   +.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||
T Consensus        54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  133 (253)
T 3e46_A           54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW  133 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence            45678999999999998862   22      6789999999999999999999999999999999999999999999999


Q ss_pred             cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      ||||+             +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus       134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~  208 (253)
T 3e46_A          134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  208 (253)
T ss_dssp             BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            99998             799999999999999999999999999999999999999999999999999999964

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=5.9e-40  Score=259.34  Aligned_cols=133  Identities=29%  Similarity=0.488  Sum_probs=125.2

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      +++.+.+||++|+++|+++++.       +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   83 (183)
T 3rz3_A            4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP   83 (183)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence            3456789999999999998876       678999999999999999999999999999999999999999999999999


Q ss_pred             Ccc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhh------CHHHHHHH
Q 048648          122 NDL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTG------GRIDYYKK  170 (182)
Q Consensus       122 nI~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~------d~~~f~~~  170 (182)
                      ||+                         +|+|++||++||.+|++||.+|++++|+|.+|+.+|++      |+++|.++
T Consensus        84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~  163 (183)
T 3rz3_A           84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDI  163 (183)
T ss_dssp             TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHH
Confidence            998                         29999999999999999999999999999999999998      78999999


Q ss_pred             HHHHHHHHhhc
Q 048648          171 AQRIVELSWKA  181 (182)
Q Consensus       171 ar~~~~~~a~~  181 (182)
                      ||+++++++..
T Consensus       164 v~~~v~~s~~~  174 (183)
T 3rz3_A          164 IRKQVLGTKVD  174 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.8e-40  Score=255.98  Aligned_cols=129  Identities=31%  Similarity=0.481  Sum_probs=120.6

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      .++..+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        19 ~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP   98 (169)
T 1yrv_A           19 SMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP   98 (169)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred             ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccC
Confidence            34557889999999999988766      778999999999999999999999999999999999999999999999999


Q ss_pred             Cc-c--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648          122 ND-L--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL  177 (182)
Q Consensus       122 nI-~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~  177 (182)
                      || +              +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus        99 NI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           99 NVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             TBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             cccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            99 4              6999999999999999999999999999999999999999999998 887764

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=259.35  Aligned_cols=129  Identities=23%  Similarity=0.383  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHcCCCC--CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648           52 CQLQQWMRDLKRLQQGAPP--GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-----  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~--~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-----  124 (182)
                      .+.+||++|+++|+.....  -.+|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+     
T Consensus        25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~  104 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT  104 (179)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence            5789999999999875443  226789999999999999999999999999999999999999999999999998     


Q ss_pred             --------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 --------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 --------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                              +|+|++|+++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus       105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~  169 (179)
T 2z5d_A          105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT  169 (179)
T ss_dssp             BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred             EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence                    69999999999999 999999999999999999999999999999999999999986

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.5e-39  Score=254.71  Aligned_cols=132  Identities=16%  Similarity=0.314  Sum_probs=122.9

Q ss_pred             CcHHHHHHHHHHHHHHHc-C--------CC---C------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCC
Q 048648           49 GLKCQLQQWMRDLKRLQQ-G--------AP---P------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP  110 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~-~--------~~---~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP  110 (182)
                      ++..+.+||++|+++|++ .        +.   .      +++|++.|+++|.||+||||+||+|+|+|.||++||++||
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP   82 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP   82 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence            456788999999999998 4        22   1      5679999999999999999999999999999999999999


Q ss_pred             eeeecc-ccccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhh-CHHHHHHHHHHH
Q 048648          111 VVPFVS-GMFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTG-GRIDYYKKAQRI  174 (182)
Q Consensus       111 ~v~f~t-~i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~-d~~~f~~~ar~~  174 (182)
                      +|+|.| +||||||+              +|+|++|+++||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|
T Consensus        83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~  162 (172)
T 2y9m_A           83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF  162 (172)
T ss_dssp             EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999 99999994              79999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHhh
Q 048648          175 VELSWK  180 (182)
Q Consensus       175 ~~~~a~  180 (182)
                      +++++.
T Consensus       163 ~~~~~~  168 (172)
T 2y9m_A          163 LAERER  168 (172)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            999874

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=5.5e-40  Score=256.96  Aligned_cols=129  Identities=23%  Similarity=0.353  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC--CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648           52 CQLQQWMRDLKRLQQGAPP--GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-----  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~--~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-----  124 (182)
                      .+.+||++|+++|++++..  .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+     
T Consensus        12 ~~~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~   91 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS   91 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             cHHHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence            5579999999999998755  678999999999999999999999999999999999999999999999999998     


Q ss_pred             --------CCCCcccHHHHHHHH-HHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 --------KWNSDYDVVAIFATI-QLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 --------~W~p~~tl~~il~~I-~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                              +|+|++|+++||.+| ++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus        92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~  156 (171)
T 1yf9_A           92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT  156 (171)
T ss_dssp             BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence                    799999999999997 79999999999999999999999999999999999999986

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=2.2e-40  Score=267.52  Aligned_cols=129  Identities=21%  Similarity=0.415  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +.+||++|+++|+++++.       ++++++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+ 
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~   82 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   82 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcC
Confidence            569999999999998766       334567999999999999999999999999999999999999999999999998 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  +|+|++|+++||.+|++||.+|++++|+|.+||.+|++|++.|.++||+|+++||+.
T Consensus        83 ~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~  151 (215)
T 1tte_A           83 VTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE  151 (215)
T ss_dssp             SSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence                        799999999999999999999999999999999999999999999999999999863

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=9.1e-40  Score=255.93  Aligned_cols=129  Identities=31%  Similarity=0.512  Sum_probs=93.2

Q ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           46 VGGGLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        46 ~~~~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      +++.+..+.+||++|+++|+++++.       +++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus        11 ~~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i   90 (172)
T 2awf_A           11 SSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI   90 (172)
T ss_dssp             --CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             cCCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence            4556677789999999999998766       457999999999999999999999999999999999999999999999


Q ss_pred             ccCCcc----------C---------------CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHH-HHHHHHH
Q 048648          119 FHRNDL----------K---------------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRI-DYYKKAQ  172 (182)
Q Consensus       119 ~HPnI~----------~---------------W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~-~f~~~ar  172 (182)
                      |||||+          .               |+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||
T Consensus        91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr  170 (172)
T 2awf_A           91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVA  170 (172)
T ss_dssp             CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC---------------------------
T ss_pred             ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHH
Confidence            999998          2               9999999999999999999999999999999999999999 9999998


Q ss_pred             HH
Q 048648          173 RI  174 (182)
Q Consensus       173 ~~  174 (182)
                      ++
T Consensus       171 ~~  172 (172)
T 2awf_A          171 RC  172 (172)
T ss_dssp             --
T ss_pred             hC
Confidence            74

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=6.3e-40  Score=252.50  Aligned_cols=128  Identities=19%  Similarity=0.424  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +.+||++|+++|+++++.       +++|++.|+++|. |+||||+||+|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   81 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE   81 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence            568999999999988765       5689999999997 9999999999999999999999999999999999999998 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  150 (154)
T 1c4z_D           82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK  150 (154)
T ss_dssp             TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred             CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence                        699999999999999999999999999999999999999999999999999999974

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-38  Score=245.78  Aligned_cols=127  Identities=21%  Similarity=0.338  Sum_probs=117.4

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+.+.+||++|+++|+.....     +++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (160)
T 1y8x_A            4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID   82 (160)
T ss_dssp             CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence            456789999999999422111     578999999998 99999999999999999999999999999999999999998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL  177 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~  177 (182)
                                  +|+|++|+++||.+|++||.+|++++|+|.+||.+|++|+++|.++||++++.
T Consensus        83 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           83 LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             CCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence                        79999999999999999999999999999999999999999999999999874

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.6e-38  Score=246.63  Aligned_cols=129  Identities=21%  Similarity=0.340  Sum_probs=119.1

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      ..++.+.+||++|+++|+. ++.      +++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus        22 ~~~~~~~~RL~kEl~~l~~-~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP   99 (180)
T 2nvu_C           22 KKASAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP   99 (180)
T ss_dssp             CSCCHHHHHHHHHHHTCCC-CTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             CCccHHHHHHHHHHHhcCC-CCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccC
Confidence            3456778999999999932 222      578999999998 99999999999999999999999999999999999999


Q ss_pred             Ccc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          122 NDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                      ||+            +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++.+
T Consensus       100 NV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~  168 (180)
T 2nvu_C          100 NIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  168 (180)
T ss_dssp             TBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred             CCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence            998            799999999999999999999999999999999999999999999999998753

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.1e-37  Score=272.13  Aligned_cols=131  Identities=26%  Similarity=0.484  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      +.+.+||++|+++|+++++.      .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            45789999999999998877      678999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~  150 (399)
T 4ddg_A           82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG  150 (399)
T ss_dssp             TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence                        899999999999999999999999999999999999999999999999999999864

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=9.3e-37  Score=242.29  Aligned_cols=132  Identities=22%  Similarity=0.395  Sum_probs=121.2

Q ss_pred             cCCCCcHHHHHHHHHHHHHHHcCCCC---------CCCCcc---eEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCee
Q 048648           45 NVGGGLKCQLQQWMRDLKRLQQGAPP---------GDDDIM---LRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV  112 (182)
Q Consensus        45 ~~~~~~~~~~~RL~~El~~l~~~~~~---------~~~~~~---~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v  112 (182)
                      ++....+.+.+||++|+++|+ .++.         +++|++   .|+++|. |++|||+||.|+++|.||++||++||+|
T Consensus        22 ~~~~~~s~a~~RL~kEl~~l~-~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v   99 (190)
T 3o2u_A           22 SIQPNLSAARIRLKRDLDSLD-LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV   99 (190)
T ss_dssp             SSSCCCCHHHHHHHHHHHTCC-CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred             CCCCCccHHHHHHHHHHHhcc-CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence            455566788899999999998 3222         468999   9999996 8889999999999999999999999999


Q ss_pred             eeccccccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          113 PFVSGMFHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       113 ~f~t~i~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                      +|.|+||||||+            +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++.+
T Consensus       100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~  177 (190)
T 3o2u_A          100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG  177 (190)
T ss_dssp             EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred             EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence            999999999999            799999999999999999999999999999999999999999999999999754

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=2.5e-36  Score=235.30  Aligned_cols=125  Identities=18%  Similarity=0.336  Sum_probs=113.7

Q ss_pred             CcHHHHHHHHHHHHHHHcCC------------CC------CCCCcceEEEEEecCCCCCCC--CCEEEEEEeeCCCCCCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGA------------PP------GDDDIMLRNAIIVGLGGTLFD--GGIFKLTLKFTKEYPVK  108 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~------------~~------~~~~~~~w~~~i~Gp~~tpY~--gg~f~~~i~fp~~YP~~  108 (182)
                      +++.+.+||++|+++|++++            +.      +++|++.|+++|.||+||||+  ||.|+++|.||++||++
T Consensus         5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~   84 (167)
T 4ds2_A            5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE   84 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred             ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence            44456799999999999876            22      678999999999999999999  99999999999999999


Q ss_pred             CCeeeeccccccCCcc------------CCCCcccHHHHHH-HHHHhhCC--CCCCChhhHHHHHHHhhCHHHHHHHHHH
Q 048648          109 PPVVPFVSGMFHRNDL------------KWNSDYDVVAIFA-TIQLMLGD--PNLYSAANQQAATMLTGGRIDYYKKAQR  173 (182)
Q Consensus       109 pP~v~f~t~i~HPnI~------------~W~p~~tl~~il~-~I~~ll~~--p~~~~p~n~~a~~~~~~d~~~f~~~ar~  173 (182)
                      ||+|+|.|++|||||+            +|+|+++++++|+ .|++|+.+  |++++|+|.+||++|++|+++|.++||+
T Consensus        85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr  164 (167)
T 4ds2_A           85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR  164 (167)
T ss_dssp             CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred             CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence            9999999999999999            8999999999755 57778774  8999999999999999999999999984

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=8.5e-36  Score=230.02  Aligned_cols=116  Identities=21%  Similarity=0.369  Sum_probs=104.3

Q ss_pred             CCcHHHHHHHHHHHHHHHcC-CCC-------CCC--CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648           48 GGLKCQLQQWMRDLKRLQQG-APP-------GDD--DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG  117 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~-~~~-------~~~--~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~  117 (182)
                      .....+.+||++|+++++++ ++.       +++  |++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence            34467789999999999998 443       223  59999999999999999999999999999999999999999999


Q ss_pred             cccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhC
Q 048648          118 MFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGG  163 (182)
Q Consensus       118 i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d  163 (182)
                      ||||||+              +|+|++|+++||.+|++||.+|++++|+|.+||.+|++|
T Consensus        97 i~HPNV~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           97 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CCCTTBCTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             cccCCCccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999998              799999999999999999999999999999999998764

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=4.7e-35  Score=248.07  Aligned_cols=146  Identities=16%  Similarity=0.289  Sum_probs=130.6

Q ss_pred             hhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCC
Q 048648           35 LDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKE  104 (182)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~  104 (182)
                      ..|+...+....+.++..+.+||++|+++|+++++.          +++|++.|+++|.||+||||+||+|+|+|.||++
T Consensus        59 ~~~~~~~~~~~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~d  138 (323)
T 3ceg_A           59 NYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQD  138 (323)
T ss_dssp             CCTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTT
T ss_pred             chHHHhhhhccCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCC
Confidence            344555555556677888999999999999987654          4689999999999999999999999999999999


Q ss_pred             CCCCCCeeeeccc-----cccCCcc-------------------CCCCcc-cHHHHHHHHHHhhC--CCCCCChhhHHH-
Q 048648          105 YPVKPPVVPFVSG-----MFHRNDL-------------------KWNSDY-DVVAIFATIQLMLG--DPNLYSAANQQA-  156 (182)
Q Consensus       105 YP~~pP~v~f~t~-----i~HPnI~-------------------~W~p~~-tl~~il~~I~~ll~--~p~~~~p~n~~a-  156 (182)
                      ||++||+|+|.|+     +|||||+                   +|+|++ ||++||.+|++||.  +|++++|+|.++ 
T Consensus       139 YP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~  218 (323)
T 3ceg_A          139 YPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSR  218 (323)
T ss_dssp             TTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGT
T ss_pred             CCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHH
Confidence            9999999999998     9999998                   499999 89999999999996  788899999876 


Q ss_pred             -HHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          157 -ATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       157 -~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                       +.++.+|+++|.++||+|+.+||+
T Consensus       219 a~~~~~~d~~~Y~~~vr~~t~k~A~  243 (323)
T 3ceg_A          219 GTPSGTQSSREYDGNIRQATVKWAM  243 (323)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHhh
Confidence             678999999999999999999986

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=3.8e-34  Score=221.50  Aligned_cols=117  Identities=21%  Similarity=0.393  Sum_probs=101.8

Q ss_pred             HHhhcCCCCcHHHHHHHHHHHHHHHcCCCC--------CCCC--cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCC
Q 048648           41 LVILNVGGGLKCQLQQWMRDLKRLQQGAPP--------GDDD--IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP  110 (182)
Q Consensus        41 ~~~~~~~~~~~~~~~RL~~El~~l~~~~~~--------~~~~--~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP  110 (182)
                      ++.-+++.....+.+||++|+++++++++.        +++|  ++.|+++|.||+||||+||+|+++|.||++||++||
T Consensus        14 ~~~~~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP   93 (160)
T 2a4d_A           14 LVPRGSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP   93 (160)
T ss_dssp             -------CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             cccccCCeeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCc
Confidence            444455555678899999999999997654        3444  899999999999999999999999999999999999


Q ss_pred             eeeeccccccCCcc---------------CCCCcccHHHHHHHHHHhhC-CCCCCChhhHHHH
Q 048648          111 VVPFVSGMFHRNDL---------------KWNSDYDVVAIFATIQLMLG-DPNLYSAANQQAA  157 (182)
Q Consensus       111 ~v~f~t~i~HPnI~---------------~W~p~~tl~~il~~I~~ll~-~p~~~~p~n~~a~  157 (182)
                      +|+|.|+||||||+               +|+|++|+++||.+|+++|. +|++++|+|.|||
T Consensus        94 ~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A           94 FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             EEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            99999999999997               69999999999999999995 7999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=4.4e-35  Score=221.77  Aligned_cols=110  Identities=17%  Similarity=0.347  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHcC-CCC-------CCC--CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           51 KCQLQQWMRDLKRLQQG-APP-------GDD--DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~-~~~-------~~~--~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      ..+.+||++|+++++++ ++.       +++  |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   84 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   84 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence            35679999999999987 343       333  58999999999999999999999999999999999999999999999


Q ss_pred             CCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHH
Q 048648          121 RNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML  160 (182)
Q Consensus       121 PnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~  160 (182)
                      |||+              +|+|++|+++||.+|+++|.+|++++|+|.+||.+|
T Consensus        85 Pnv~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           85 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             CCEeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            9998              799999999999999999999999999999887654

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-32  Score=204.90  Aligned_cols=100  Identities=22%  Similarity=0.416  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRND  123 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI  123 (182)
                      +.+.+||++|+++++++++.      +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv   84 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV   84 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence            35679999999999998766      778999999999999999999999999999999999999999999997 99999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhCCCCCCC
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLGDPNLYS  150 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~  150 (182)
                      +            +|+|++|+++||.+|++||.+|+.+.
T Consensus        85 ~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           85 YSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             CCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9            89999999999999999999998753

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.98  E-value=6.6e-32  Score=203.88  Aligned_cols=100  Identities=22%  Similarity=0.429  Sum_probs=93.6

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHR  121 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP  121 (182)
                      +.+.+.+||++|+++++++++.      .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus        17 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP   96 (136)
T 2h2y_A           17 NLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT   96 (136)
T ss_dssp             CTTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence            3446789999999999998766      678999999999999999999999999999999999999999999997 999


Q ss_pred             Ccc------------CCCCcccHHHHHHHHHHhhCCCCC
Q 048648          122 NDL------------KWNSDYDVVAIFATIQLMLGDPNL  148 (182)
Q Consensus       122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~  148 (182)
                      ||+            +|+|++|+++||.+|++||.+|+.
T Consensus        97 nv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           97 HVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             TBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             cCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            998            799999999999999999999874

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.97  E-value=9.6e-33  Score=215.63  Aligned_cols=107  Identities=20%  Similarity=0.423  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCC--------CCCC--cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP--------GDDD--IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~--------~~~~--~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      ..+.+||++|+++|+++++.        +++|  ++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+|||
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  113 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  113 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence            45789999999999997644        3444  8999999999999999999999999999999999999999999999


Q ss_pred             CCcc---------------CCCCcccHHHHHHHHHHhhC-CCCCCChhhHHHH
Q 048648          121 RNDL---------------KWNSDYDVVAIFATIQLMLG-DPNLYSAANQQAA  157 (182)
Q Consensus       121 PnI~---------------~W~p~~tl~~il~~I~~ll~-~p~~~~p~n~~a~  157 (182)
                      |||+               .|+|++|+++||.+|++||. +|++++|+|.|||
T Consensus       114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            9996               79999999999999999997 6999999999987

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=4e-30  Score=194.11  Aligned_cols=90  Identities=29%  Similarity=0.527  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHcCCCC--------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc--cCCcc
Q 048648           55 QQWMRDLKRLQQGAPP--------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF--HRNDL  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~--------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnI~  124 (182)
                      +||++|+++++++++.        +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|  ||||+
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~  104 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY  104 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence            9999999999988765        4679999999999999999999999999999999999999999999999  99998


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhC
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLG  144 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~  144 (182)
                                  +|+|++|+++||.+|++||.
T Consensus       105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          105 SNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence                        89999999999999999984

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.96  E-value=2.7e-31  Score=210.19  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=110.3

Q ss_pred             cCCCCcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecC-CCCCCCC-----------CEEEEEEeeCC
Q 048648           45 NVGGGLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGL-GGTLFDG-----------GIFKLTLKFTK  103 (182)
Q Consensus        45 ~~~~~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp-~~tpY~g-----------g~f~~~i~fp~  103 (182)
                      ....++..+.+||++|+++|++++   +.      .++|++.|+++|.|| ++|||+|           |.|+|+|.||+
T Consensus        20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~   99 (186)
T 1zuo_A           20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   99 (186)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence            344566788999999999999877   23      668999999999998 8999998           89999999999


Q ss_pred             CCCCCCCeeeeccccccC-Ccc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHH
Q 048648          104 EYPVKPPVVPFVSGMFHR-NDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYK  169 (182)
Q Consensus       104 ~YP~~pP~v~f~t~i~HP-nI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~  169 (182)
                      +||++||+|+|.|++||| ||+             +|+|++||++||.+|+++|.+|+...        .+.+++.+|.+
T Consensus       100 ~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~  171 (186)
T 1zuo_A          100 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNL  171 (186)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCH
T ss_pred             CCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhH
Confidence            999999999999999999 587             69999999999999999999886532        45556788888


Q ss_pred             HHHHHHHHHhhc
Q 048648          170 KAQRIVELSWKA  181 (182)
Q Consensus       170 ~ar~~~~~~a~~  181 (182)
                      .+++++.+++.+
T Consensus       172 ~~~~~~~~~~~~  183 (186)
T 1zuo_A          172 ARAQQSYNSIVQ  183 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887654

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.96  E-value=3.8e-29  Score=198.00  Aligned_cols=102  Identities=20%  Similarity=0.379  Sum_probs=90.1

Q ss_pred             CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648           48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR  121 (182)
Q Consensus        48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP  121 (182)
                      ..+..+.+||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+  ||
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~   87 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG   87 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence            34457889999999999998776      67899999999999999999999999999999999999999999998  66


Q ss_pred             Ccc---------------CCCCcccHHHHHHHHHHhhCCCCCCCh
Q 048648          122 NDL---------------KWNSDYDVVAIFATIQLMLGDPNLYSA  151 (182)
Q Consensus       122 nI~---------------~W~p~~tl~~il~~I~~ll~~p~~~~p  151 (182)
                      |++               .|+|+++|.+||.+|+++|.+|+++..
T Consensus        88 ~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             SBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             eeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            664               699999999999999999999988643

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.83  E-value=8e-22  Score=151.72  Aligned_cols=103  Identities=11%  Similarity=0.092  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCC----------EEEEEEeeCCCCCCCCCeeeeccc-cc
Q 048648           51 KCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGG----------IFKLTLKFTKEYPVKPPVVPFVSG-MF  119 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~  119 (182)
                      ..-.+||++|++.|.+.....++|+..|.+++.||+||+|+||          .|.+++.||++||.+||+|+|.+. +|
T Consensus        31 ~~w~~RL~eE~k~L~k~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~  110 (172)
T 2z6o_A           31 ELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK  110 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence            4558999999999999543377799999999999999999999          999999999999999999999998 99


Q ss_pred             cCCcc----------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHh
Q 048648          120 HRNDL----------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLT  161 (182)
Q Consensus       120 HPnI~----------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~  161 (182)
                      |||||                .|+|.+++..+|.-        ....++..|+..+..
T Consensus       111 hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~  160 (172)
T 2z6o_A          111 TAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ  160 (172)
T ss_dssp             CSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence            99999                34599999999843        234456667766654

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.56  E-value=1.4e-14  Score=111.69  Aligned_cols=96  Identities=18%  Similarity=0.207  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCE---EEEEEeeCCCCCCCCCeeeecc------
Q 048648           55 QQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGI---FKLTLKFTKEYPVKPPVVPFVS------  116 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~---f~~~i~fp~~YP~~pP~v~f~t------  116 (182)
                      +|..+|+..+.+.-+.         .++....+.+.+.|.-.++|+||.   |.+.|.||.+||++||.|.|.+      
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            6677888887765554         556666677777777779999998   8899999999999999998865      


Q ss_pred             -c---cc-cCCcc-----------CCCC-cccHHHHHHHHHHhhCCCCCCC
Q 048648          117 -G---MF-HRNDL-----------KWNS-DYDVVAIFATIQLMLGDPNLYS  150 (182)
Q Consensus       117 -~---i~-HPnI~-----------~W~p-~~tl~~il~~I~~ll~~p~~~~  150 (182)
                       +   |+ |||||           +|+| +.++.++|.+|+++|.+|+++.
T Consensus       111 ~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          111 TISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             TSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence             1   77 99999           9999 5799999999999999999874

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.38  E-value=3.6e-14  Score=107.07  Aligned_cols=81  Identities=11%  Similarity=0.071  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCC----------EEEEEEeeCCCCCCCCCeeeeccc-cc
Q 048648           51 KCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGG----------IFKLTLKFTKEYPVKPPVVPFVSG-MF  119 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~  119 (182)
                      ..=..||.+|+..|-+.-..+.++-..|...+.||.||+|.|+          .|++++.||.+||.+||+|+|.+. .+
T Consensus        33 ~~w~~RlkeEy~alI~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk  112 (168)
T 3kpa_A           33 DKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK  112 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence            4467899999999876443333344568899999999999999          999999999999999999999995 89


Q ss_pred             cCCcc---------CCCCccc
Q 048648          120 HRNDL---------KWNSDYD  131 (182)
Q Consensus       120 HPnI~---------~W~p~~t  131 (182)
                      |||+|         .|+|.++
T Consensus       113 t~kmYr~GkICLdIhwkPlW~  133 (168)
T 3kpa_A          113 TVKMYRGGKICMTTHFFPLWA  133 (168)
T ss_dssp             CSSEETTTEECCCTTHHHHHH
T ss_pred             CccccCCCcEEeccccchhhH
Confidence            99999         6777654

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.06  E-value=7.8e-10  Score=83.79  Aligned_cols=83  Identities=18%  Similarity=0.410  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEE--EEeeCCCCCCCCCeeeeccc------c
Q 048648           57 WMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKL--TLKFTKEYPVKPPVVPFVSG------M  118 (182)
Q Consensus        57 L~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i  118 (182)
                      ..+|+..+.+.-+.          ...+++.|.++|.    .+|+|+.|.+  .|-||++||++||.| |.++      .
T Consensus        25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~   99 (146)
T 3obq_A           25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK   99 (146)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred             hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence            34566666655544          4468899999996    5799999985  889999999999999 7766      5


Q ss_pred             ccCCcc-----------CCCC-cccHHHHHHHHHHhhC
Q 048648          119 FHRNDL-----------KWNS-DYDVVAIFATIQLMLG  144 (182)
Q Consensus       119 ~HPnI~-----------~W~p-~~tl~~il~~I~~ll~  144 (182)
                      .|||||           +|++ ..+|.+++..+++.|.
T Consensus       100 ~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~  137 (146)
T 3obq_A          100 TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG  137 (146)
T ss_dssp             CBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHh
Confidence            899999           9988 7899999999999886

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.05  E-value=0.0037  Score=45.15  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcCCCC----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCC
Q 048648           53 QLQQWMRDLKRLQQGAPP----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNS  128 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p  128 (182)
                      ...+...|+..|....+.    ..+....+.+.+..-.+..-+.-.+.+.|.||++||..||.+...+.       .|-+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~-------~~l~   83 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ-------ENLE   83 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE-------SSCC
T ss_pred             hHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC-------CCCC
Confidence            346678899999876655    22234566666653222222344789999999999999999987553       4767


Q ss_pred             cccHHHHHHHHHHhh
Q 048648          129 DYDVVAIFATIQLML  143 (182)
Q Consensus       129 ~~tl~~il~~I~~ll  143 (182)
                      ...+..+...|....
T Consensus        84 ~~~~~~L~~~L~~~~   98 (128)
T 2ebm_A           84 DNDVSDILKLLALQA   98 (128)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766677766666555

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.08  Score=38.49  Aligned_cols=84  Identities=10%  Similarity=0.062  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCC----CCC--------CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP----GDD--------DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~----~~~--------~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      .....+...|+..|+...+.    ...        ....+.+.+.+..+ .-..-.+.+.|.+|++||..||.|...+. 
T Consensus         9 ~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~-   86 (138)
T 2yz0_A            9 DQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV-   86 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC-
T ss_pred             cchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC-
Confidence            34446678899999886655    111        24667777763322 21234788999999999999999987654 


Q ss_pred             ccCCccCCCCcccHHHHHHHHHHh
Q 048648          119 FHRNDLKWNSDYDVVAIFATIQLM  142 (182)
Q Consensus       119 ~HPnI~~W~p~~tl~~il~~I~~l  142 (182)
                            .|-+...+..+...|...
T Consensus        87 ------~~L~~~~~~~L~~~L~~~  104 (138)
T 2yz0_A           87 ------QNVMDSQLQMLKSEFKKI  104 (138)
T ss_dssp             ------CSCCSHHHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHH
Confidence                  244444555555555444

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.08  E-value=0.024  Score=40.82  Aligned_cols=82  Identities=15%  Similarity=0.070  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCCC-----CC---CCcceEEEEEecCCCCCCC--CCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           55 QQWMRDLKRLQQGAPP-----GD---DDIMLRNAIIVGLGGTLFD--GGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~-----~~---~~~~~w~~~i~Gp~~tpY~--gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+...|+..|+...+.     ..   .....+.+.+..+.+..-+  .-.+.+.|.+|++||..+|.|...+.       
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~-------   83 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP-------   83 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE-------
T ss_pred             HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC-------
Confidence            3577888888876654     11   2344455555422221111  24788999999999999999987764       


Q ss_pred             CCCCcccHHHHHHHHHHhh
Q 048648          125 KWNSDYDVVAIFATIQLML  143 (182)
Q Consensus       125 ~W~p~~tl~~il~~I~~ll  143 (182)
                      .|-+...+..+...|....
T Consensus        84 ~~L~~~~~~~L~~~L~~~~  102 (128)
T 2day_A           84 RGLSDEQIHTILQVLGHVA  102 (128)
T ss_dssp             ESSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            3655555666655555443

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=95.72  E-value=0.045  Score=42.58  Aligned_cols=80  Identities=15%  Similarity=0.246  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHcCCCC-CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCccCCCCcccHH
Q 048648           56 QWMRDLKRLQQGAPP-GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRNDLKWNSDYDVV  133 (182)
Q Consensus        56 RL~~El~~l~~~~~~-~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~~W~p~~tl~  133 (182)
                      +|.+|+.++.=+... .++++....+.+..-     .|....++|.++.+||.+||.+...-|. ++  + .|+|..++.
T Consensus         5 ~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~--~-~w~~~ssL~   76 (186)
T 3zqs_A            5 SLIEEIGTLGWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPFC--A-SWTPQSSLI   76 (186)
T ss_dssp             SHHHHHHHHCGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCCC--C-CCCTTCCHH
T ss_pred             HHHHHHHHhCCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCcc--c-ccCCCccHH
Confidence            577888887554444 456788888888743     3678999999999999999988766554 22  2 799999998


Q ss_pred             HHHHHHHHhh
Q 048648          134 AIFATIQLML  143 (182)
Q Consensus       134 ~il~~I~~ll  143 (182)
                      +++...+..|
T Consensus        77 ~v~~qF~~~L   86 (186)
T 3zqs_A           77 SIYSQFLAAI   86 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766665

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=95.14  E-value=0.5  Score=35.13  Aligned_cols=45  Identities=11%  Similarity=0.039  Sum_probs=32.0

Q ss_pred             EEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhCCC
Q 048648           94 IFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDP  146 (182)
Q Consensus        94 ~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~~p  146 (182)
                      .+.+.|.+|.+||..+|.|...+.        |-.......+...|...+.+-
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~--------~l~~~~~~~L~~~L~~~l~~~  120 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS--------ELDRHQQLLLNKGLTSYIGTF  120 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS--------SSCHHHHHHHHHHHHHHHTTS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC--------CCCHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999986553        333344555556666666543

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=94.98  E-value=0.2  Score=36.14  Aligned_cols=83  Identities=16%  Similarity=0.046  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHcCCCC----CCC-------CcceEEEEEecCCC-C-CCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648           52 CQLQQWMRDLKRLQQGAPP----GDD-------DIMLRNAIIVGLGG-T-LFDGGIFKLTLKFTKEYPVKPPVVPFVSGM  118 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~----~~~-------~~~~w~~~i~Gp~~-t-pY~gg~f~~~i~fp~~YP~~pP~v~f~t~i  118 (182)
                      ....+...|+..|+...+.    ..+       ....+.+.+. +.+ + .-..-.+.+.|.||++||..||.|..... 
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~-   87 (137)
T 1ukx_A           10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA-   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE-
T ss_pred             chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEecC-
Confidence            3345678888888876654    111       1345666664 322 1 00124689999999999999999987433 


Q ss_pred             ccCCccCCCCcccHHHHHHHHHHh
Q 048648          119 FHRNDLKWNSDYDVVAIFATIQLM  142 (182)
Q Consensus       119 ~HPnI~~W~p~~tl~~il~~I~~l  142 (182)
                            .|-+...+..+...|...
T Consensus        88 ------~~L~~~~~~~L~~~L~~~  105 (137)
T 1ukx_A           88 ------KGLSNESVNLLKSHLEEL  105 (137)
T ss_dssp             ------ESSSSSHHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHH
Confidence                  244444444444444433

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.63  E-value=0.36  Score=34.49  Aligned_cols=79  Identities=13%  Similarity=0.016  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHcCCCC------CC---CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCC
Q 048648           56 QWMRDLKRLQQGAPP------GD---DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKW  126 (182)
Q Consensus        56 RL~~El~~l~~~~~~------~~---~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W  126 (182)
                      ....|+..|+...+.      ..   .+...+.+.+.. .+..=..-.+.+.|.+|++||..||.+...+        .|
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~--------~~   81 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS--------EQ   81 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC--------SS
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh--------hh
Confidence            466788777764431      11   224577777753 2210012478999999999999999987653        25


Q ss_pred             CCcccHHHHHHHHHHhh
Q 048648          127 NSDYDVVAIFATIQLML  143 (182)
Q Consensus       127 ~p~~tl~~il~~I~~ll  143 (182)
                      -+......+...|....
T Consensus        82 L~~~~~~~l~~~L~~~~   98 (128)
T 2ebk_A           82 LTRAQCVTVKEKLLEQA   98 (128)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            55555666666665554

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=92.34  E-value=0.35  Score=35.75  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             EEEEEEeeCCCCCCCCCeeeeccc
Q 048648           94 IFKLTLKFTKEYPVKPPVVPFVSG  117 (182)
Q Consensus        94 ~f~~~i~fp~~YP~~pP~v~f~t~  117 (182)
                      .+.+.|.+|++||..||.+.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            588999999999999999986654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-21
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	5e-19
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-18
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-18
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-18
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-17
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	3e-17
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-17
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-16
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-16
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	9e-16
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-15
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-15
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	5e-15
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	8e-15
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	8e-15
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	2e-14
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	3e-14
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	8e-14
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-13
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-13
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	9e-13
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-12
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-12
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	8e-12
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-10
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-09
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	6e-09
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	7e-06
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	4e-05

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 84.0 bits (207), Expect = 1e-21
 Identities = 56/141 (39%), Positives = 80/141 (56%), Gaps = 18/141 (12%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD KR+++ APPG       D++M+ NA+I+G   T ++ G F+L L+F +EYP KPP 
Sbjct: 9   MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPH 68

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N              +W   YDV +I  +IQ +  DPN  S AN +AAT+
Sbjct: 69  VKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL 128

Query: 160 LTGGRIDYYKKAQRIVELSWK 180
               +  Y K+ +  VE SW+
Sbjct: 129 FKDHKSQYVKRVKETVEKSWE 149

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 77.1 bits (189), Expect = 5e-19
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 32/155 (20%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
            + L  +++    G       D+DI     +++G   TL++GG FK  L F ++YP KPP
Sbjct: 6   KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 65

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F+S ++H N                         + +W   + V  I  ++  ML D
Sbjct: 66  KMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTD 125

Query: 146 PNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180
           PN  S AN  AA M      ++ KK  + V  S +
Sbjct: 126 PNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 160

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 75.9 bits (186), Expect = 1e-18
 Identities = 61/140 (43%), Positives = 80/140 (57%), Gaps = 18/140 (12%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           MRD K+LQ+  P G      +D+I+   AII G   T F+ G FKL+L+FT+EYP KPP 
Sbjct: 9   MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 68

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F+S MFH N              +W+  YDV AI  +IQ +L +PN  S AN  AA +
Sbjct: 69  VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 128

Query: 160 LTGGRIDYYKKAQRIVELSW 179
               R +Y K+ Q+IVE SW
Sbjct: 129 YQENRREYEKRVQQIVEQSW 148

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 9e-18
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  +    PP        D+I    + I+G  G++++GG+F L + F+ +YP KPP 
Sbjct: 8   QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPK 67

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N               W+    +  +  +I  +L D N         AT 
Sbjct: 68  VTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQ 127

Query: 160 LTGGRIDYYKKAQRIVE 176
               R ++ + A++  +
Sbjct: 128 YMTNRAEHDRMARQWTK 144

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 1e-17
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 58  MRDLKRLQQGAPPG----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVP 113
            +D+  L           D D +L   +++      +  G F  + K  + YP  PP V 
Sbjct: 9   QKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVK 68

Query: 114 FVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLT 161
             + ++H N               W     + +I   +Q +  +PN     N++AA +L 
Sbjct: 69  CETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQ 128

Query: 162 GGRIDYYKKAQRIVELSW 179
             R  + +  QR +   +
Sbjct: 129 NNRRLFEQNVQRSMRGGY 146

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 72.5 bits (177), Expect = 3e-17
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L+ L     PG       D++    A + G   T+++   +KLTL+F  +YP KPPV
Sbjct: 15  QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPV 74

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F +  +H N               W + YDV  I  ++Q +LG+PN  S  N QAA M
Sbjct: 75  VKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADM 134

Query: 160 LTGGRIDYYKKAQRIVELS 178
            +  + +Y K      + +
Sbjct: 135 WS-NQTEYKKVLHEKYKTA 152

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 72.1 bits (176), Expect = 4e-17
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 18/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           +++ ++L     PG      DD++      I G   + ++ GIF+L L    +YP++ P 
Sbjct: 9   IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPK 68

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++ ++H N               W+    +  +  +IQ +L  PN         A  
Sbjct: 69  VRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAED 128

Query: 160 LTGGRIDYYKKAQRIVEL 177
                     KA+   +L
Sbjct: 129 WIKNEQGAKAKAREWTKL 146

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 1e-16
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 25/144 (17%)

Query: 58  MRDLKRLQQGAPPG-----------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
            ++ K  ++  P G             ++M     I G  GT ++GG+FKL + F  +YP
Sbjct: 8   AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 67

Query: 107 VKPPVVPFVSGMFH--------------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAA 152
             PP   F   +FH                D  W     +  I   IQ +L +PN+   A
Sbjct: 68  SSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPA 127

Query: 153 NQQAATMLTGGRIDYYKKAQRIVE 176
             +A T+    R++Y K+ +   +
Sbjct: 128 QAEAYTIYCQNRVEYEKRVRAQAK 151

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 69.4 bits (169), Expect = 4e-16
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 20/139 (14%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           M++++ ++             + DI       +G  GT ++GG F + ++   EYP KPP
Sbjct: 7   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 66

Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
            + F + ++H N                W+    + +   ++Q +L  P      + + A
Sbjct: 67  KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVA 126

Query: 158 TMLTGGRIDYYKKAQRIVE 176
                 R  + K A     
Sbjct: 127 QHYLRDRESFNKTAALWTR 145

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 9e-16
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 21/136 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            RD   L++    G       +D+M     I GL  +++ G +F+LT+ FT EY   PPV
Sbjct: 10  HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPV 69

Query: 112 VPFVSGMFH---------------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
           V F++  FH                N  KWN++Y + +I   +Q+ML +P L +  N +A
Sbjct: 70  VKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEA 129

Query: 157 ATMLTGGRIDYYKKAQ 172
           A +L      Y    +
Sbjct: 130 ARILVKDESLYRTILR 145

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 67.5 bits (164), Expect = 3e-15
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 29/152 (19%)

Query: 54  LQQWMRDLKRLQQG----------------APPGDDDIMLRNAIIVGLGGTLFDGGIFKL 97
           L + + D+++LQ+                 A     DI      I G  GT ++GG F L
Sbjct: 6   LLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTL 65

Query: 98  TLKFTKEYPVKPPVVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLG 144
            +    +YP  PP + FV+ ++H N               +W+    +     +IQ ML 
Sbjct: 66  DIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLA 125

Query: 145 DPNLYSAANQQAATMLTGGRIDYYKKAQRIVE 176
           DP      + + A M+      + + A+   E
Sbjct: 126 DPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 157

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 67.5 bits (164), Expect = 3e-15
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 32/151 (21%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
           +++L++L + +PPG       +++I + + +I G   T +  G+F   L+F K+YP+ PP
Sbjct: 9   LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 68

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F   + H N                         + +W+    V  I  ++  ML +
Sbjct: 69  KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 128

Query: 146 PNLYSAANQQAATMLTGGRIDYYKKAQRIVE 176
           PN+ S AN  A  +    R ++ ++ +  + 
Sbjct: 129 PNIESGANIDACILWRDNRPEFERQVKLSIL 159

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 66.7 bits (162), Expect = 5e-15
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 16/135 (11%)

Query: 58  MRDLKRLQQGAPPG--DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV 115
             D  RL          D +        G  GT ++ G + L ++   +YP K P + F 
Sbjct: 6   EMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC 65

Query: 116 SGMFHRN----DLKWNSDYDVVA----------IFATIQLMLGDPNLYSAANQQAATMLT 161
           + + H N          D                   +  +L  PN     N QAA +L 
Sbjct: 66  NRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 125

Query: 162 GGRIDYYKKAQRIVE 176
             R+ +    +  V 
Sbjct: 126 ADRVGFDALLREHVS 140

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 8e-15
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           M++L+ +++           D+  +L    ++      +D G F++ + F  EYP KPP 
Sbjct: 5   MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPK 64

Query: 112 VPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
           + F + ++H N                W        +  ++  ++ DP          A 
Sbjct: 65  ITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAE 124

Query: 159 MLTGGRIDYYKKAQRIVE 176
             +  R  + K A+   +
Sbjct: 125 EYSKDRKKFCKNAEEFTK 142

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 8e-15
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 19/134 (14%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           +++L+ LQ+  PP       DD  +L    ++      +    F L + F  EYP KPP+
Sbjct: 6   VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPM 65

Query: 112 VPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAAT 158
           + F + ++H N                W        +   + +++  PN+        A 
Sbjct: 66  IKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLAD 125

Query: 159 MLTGGRIDYYKKAQ 172
           +LT     + K A+
Sbjct: 126 LLTQNPELFRKNAE 139

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 64.8 bits (157), Expect = 2e-14
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L+ L +  P         DD+    A I+G   + + GG+F LT+ F  +YP KPP 
Sbjct: 7   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPK 66

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F + ++H N              +W+    +  +  +I  +L DPN       + A +
Sbjct: 67  VAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARI 126

Query: 160 LTGGRIDYYKKAQRIVE 176
               R  Y + A+   +
Sbjct: 127 YKTDRERYNQLAREWTQ 143

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 3e-14
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 18/133 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
           +++ +RL     PG      + +    + +I G   + F+GG FKL L   +EYP+  P 
Sbjct: 8   IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 67

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++ ++H N              KW+    +  +  +IQ +L  PN         A  
Sbjct: 68  VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 127

Query: 160 LTGGRIDYYKKAQ 172
                    + A+
Sbjct: 128 WKTNEAQAIETAR 140

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.3 bits (153), Expect = 8e-14
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 58  MRDLKRLQQGAPPG---------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
            R+ K + +              D++       I G   T ++GG ++L +K  + YP  
Sbjct: 10  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 69

Query: 109 PPVVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           PP V F++ ++H N               +W +   +  +  ++Q +L         +  
Sbjct: 70  PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAV 129

Query: 156 AATMLTGGRIDYYKKAQ 172
            A         + + A+
Sbjct: 130 VANQYKQNPEMFKQTAR 146

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 22/141 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            R+L  L    PPG       D +    A I+G   T ++ G+FKL +   + YP +PP 
Sbjct: 8   KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 67

Query: 112 VPFVSGMFHRN----------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
           + F++ ++H N                   W    ++  +  +IQL++ +PN        
Sbjct: 68  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 127

Query: 156 AATMLTGGRIDYYKKAQRIVE 176
            ++     +  + K A++  E
Sbjct: 128 ISSEFKYNKPAFLKNARQWTE 148

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 3e-13
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 19/140 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L  L      G       D++      I G  GT+++   +KL+L+F   YP   P 
Sbjct: 7   QQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPT 66

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
           V F++  +H N              KW++ YDV  I  +IQ +LG+PN+ S  N  AA +
Sbjct: 67  VKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL 126

Query: 160 LTGGRIDYYKKAQRIVELSW 179
                  + K  Q       
Sbjct: 127 WK-NPTAFKKYLQETYSKQV 145

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 18/138 (13%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            +++  L    P G      ++D+      I G  GT + GG+F++ L   K++P  PP 
Sbjct: 12  YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 71

Query: 112 VPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
             F++ +FH N               W ++  +  +  TI+ +L  PN  SA N++A  +
Sbjct: 72  GYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRL 131

Query: 160 LTGGRIDYYKKAQRIVEL 177
           L     +Y  +A+ + E+
Sbjct: 132 LLENYEEYAARARLLTEI 149

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 1e-12
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 26/127 (20%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L+  Q+G   G        D+D+ L     +I+G   T+++  I+ L ++   +YP 
Sbjct: 11  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 70

Query: 108 KPPVVPFVSGMFHRNDL---------------KWNSDYDVVAIFATIQLMLGDP-NLYSA 151
            PP V FV+ +                     KW + Y +  +   ++ ++    N+   
Sbjct: 71  APPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLP 130

Query: 152 ANQQAAT 158
              +   
Sbjct: 131 QPPEGQC 137

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 58.5 bits (141), Expect = 3e-12
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
           + +L++ ++G  P          DDI +   N  I+G   +  +  I+ L++     YP 
Sbjct: 10  LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 69

Query: 108 KPPVVPFVSGM---------------FHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSAA 152
            PP V F+S +               FH     W   Y +  +   ++  +  P      
Sbjct: 70  SPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLR 128

Query: 153 NQQAATM 159
             +    
Sbjct: 129 QPKEGET 135

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 8e-12
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 22/142 (15%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            +D  R+++   P         +I+  + ++ G   T ++GG +   L F +E+P KPP 
Sbjct: 7   KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 66

Query: 112 VPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYS---AANQQ 155
           +  ++                      WN  + V  I   +   + +          +  
Sbjct: 67  IYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDF 126

Query: 156 AATMLTGGRIDYYKKAQRIVEL 177
               L    + +  K +   EL
Sbjct: 127 TKRQLAVQSLAFNLKDKVFCEL 148

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 32/121 (26%)

Query: 58  MRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
            R L  L +    G       D+D+     +I+G   TL++GG+FK  L F K+YP++PP
Sbjct: 5   RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 64

Query: 111 VVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQLMLGD 145
            + F++ ++H N                         + +W   + V  I  ++  ML D
Sbjct: 65  KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 124

Query: 146 P 146
           P
Sbjct: 125 P 125

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 50.1 bits (119), Expect = 3e-09
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 58  MRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
            ++L       P         ++I +     VGL  T++   ++KL + F  +YP+KPP+
Sbjct: 4   QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPI 63

Query: 112 VPFVSGMFHRNDL-------------KWNSDYDVVAIFATIQLML 143
           V F+        +              +N    +  +  +I  ML
Sbjct: 64  VYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-09
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 22/108 (20%)

Query: 58  MRDLKRLQQGAPPG--------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
            ++L  LQ   PPG         + I      + G  GTL++G  F+L  KF+  YP   
Sbjct: 9   QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 68

Query: 110 PVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLML 143
           P V F       +                 W+    V ++  +I  ML
Sbjct: 69  PQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-06
 Identities = 17/152 (11%), Positives = 35/152 (23%), Gaps = 35/152 (23%)

Query: 58  MRDLKRLQQGAPPG---------DDDIMLRNAIIVG------------LGGTLFDGGIFK 96
           M++L+ + +              +D +   +  +              +           
Sbjct: 10  MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 69

Query: 97  LTLKFTKEYPVKPPVVPFVSGMFHRNDL--------------KWNSDYDVVAIFATIQLM 142
           L   F   +P  PP V  V  +     +               W+S Y + ++   I   
Sbjct: 70  LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINAT 129

Query: 143 LGDPNLYSAANQQAATMLTGGRIDYYKKAQRI 174
           L                        Y    +I
Sbjct: 130 LVKGKARVQFGANKNQYNLARAQQSYNSIVQI 161

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 12/122 (9%), Positives = 35/122 (28%), Gaps = 29/122 (23%)

Query: 58  MRDLKRLQQGAP---------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLK--FTKEYP 106
           +R+   +                +D        + G     + G  + + +       YP
Sbjct: 20  VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79

Query: 107 VKPPVV-----PFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPN-L 148
             PP+        ++    ++                +   D++ +   + ++ GD   +
Sbjct: 80  YNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPPV 139

Query: 149 YS 150
           +S
Sbjct: 140 FS 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.56
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.42
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	95.83
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	94.44
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	93.98
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	93.02
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	91.87

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=9.5e-42  Score=259.44  Aligned_cols=128  Identities=21%  Similarity=0.418  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +.|||++|+++|+++++.       +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            579999999999998776       567999999999999999999999999999999999999999999999999999 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        82 ~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence                        79999999999999999999999999999999999999999999999999999984

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=259.10  Aligned_cols=130  Identities=23%  Similarity=0.467  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      .+.+||++|+++|.++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+ 
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~   81 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC
Confidence            4679999999999998887      889999999999999999999999999999999999999999999999999999 


Q ss_pred             ---------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ---------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ---------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                     .|+|++|+.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++|||++
T Consensus        82 ~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~~  153 (154)
T d1yh2a1          82 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  153 (154)
T ss_dssp             TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence                           599999999999999999999999999999999999999999999999999999975

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=3.1e-41  Score=256.27  Aligned_cols=129  Identities=24%  Similarity=0.445  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      .+.|||++|+++|+++++.      .++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+ 
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~   81 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS   81 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECC
Confidence            4679999999999998877      889999999999999999999999999999999999999999999999999998 


Q ss_pred             -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                 .|+|++|+.+||.+|+.+|.+|++++|+|.+|+++|++|+++|.++||+|++|||.
T Consensus        82 ~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          82 QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence                       79999999999999999999999999999999999999999999999999999984

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-41  Score=259.00  Aligned_cols=132  Identities=18%  Similarity=0.339  Sum_probs=125.0

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF  119 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~  119 (182)
                      |+..+.+||++|++++.+....         .++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            4567889999999999876421         7889999999999999999999999999999999999999999999999


Q ss_pred             cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      ||||+             .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        81 Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~A~  154 (154)
T d2bepa1          81 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG  154 (154)
T ss_dssp             BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            99998             89999999999999999999999999999999999999999999999999999983

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=4.6e-41  Score=256.42  Aligned_cols=131  Identities=25%  Similarity=0.457  Sum_probs=126.6

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      .+..+++||++|+++|.++++.      +++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   82 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN   82 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCce
Confidence            5677899999999999998877      7889999999999999999999999999999999999999999999999999


Q ss_pred             cc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          123 DL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       123 I~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                      |+            +|+|++|+++||.+|+++|.+|+.++|+|.+||++|++|+++|.++||+|+++|.
T Consensus        83 I~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          83 VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             BCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence            99            8999999999999999999999999999999999999999999999999999984

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=3.2e-41  Score=256.66  Aligned_cols=128  Identities=23%  Similarity=0.422  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      .|||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+   
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G   83 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG   83 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCC
Confidence            48999999999998877      889999999999999999999999999999999999999999999999999999   


Q ss_pred             ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                               .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus        84 ~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~~  149 (149)
T d1j7db_          84 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  149 (149)
T ss_dssp             BBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             cEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence                     899999999999999999999999999999999999999999999999999999973

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=5.1e-41  Score=256.10  Aligned_cols=131  Identities=42%  Similarity=0.763  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      .+|.|||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   81 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCC
Confidence            46789999999999999877      778999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  .|+|++++++||.+|+++|.+|+.++|+|.+||++|++|+++|.++||++++++++.
T Consensus        82 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~~~  150 (153)
T d1ayza_          82 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED  150 (153)
T ss_dssp             TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                        899999999999999999999999999999999999999999999999999999864

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=3.4e-41  Score=258.37  Aligned_cols=130  Identities=28%  Similarity=0.508  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHcCCCC-----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           52 CQLQQWMRDLKRLQQGAPP-----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~-----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      .|++||++|+++|+++++.           +.+|+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            4789999999999999888           23489999999999999999999999999999999999999999999999


Q ss_pred             CCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          121 RNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       121 PnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                      |||+              +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++|||+.
T Consensus        82 PnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~~  156 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS  156 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Confidence            9999              699999999999999999999999999999999999999999999999999999974

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=8e-42  Score=260.86  Aligned_cols=128  Identities=23%  Similarity=0.414  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      .|||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+   
T Consensus         5 ~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G   84 (152)
T d1jata_           5 PKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG   84 (152)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCC
Confidence            48999999999998887      888999999999999999999999999999999999999999999999999999   


Q ss_pred             ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                               .|+|++++.+||.+|++||.+|++++|+|.+||++|.+|+++|.++||+|+++||++
T Consensus        85 ~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~~  150 (152)
T d1jata_          85 RICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK  150 (152)
T ss_dssp             CBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred             CeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence                     899999999999999999999999999999999999999999999999999999975

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=4.9e-41  Score=254.67  Aligned_cols=128  Identities=27%  Similarity=0.486  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648           53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--  124 (182)
                      |+|||++|+++|+++++.      +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+  
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   81 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSN   81 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECCC
Confidence            689999999999999877      788999999999999999999999999999999999999999999999999999  


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                .|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||++++|||+
T Consensus        82 G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A~  147 (147)
T d1z2ua1          82 GSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  147 (147)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence                      89999999999999999999999999999999999999999999999999999985

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=6.7e-41  Score=254.77  Aligned_cols=129  Identities=47%  Similarity=0.783  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~  124 (182)
                      ++|.|||++|+++|+++++.      +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY   81 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEc
Confidence            35679999999999998877      778999999999999999999999999999999999999999999999999999


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW  179 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a  179 (182)
                                  .|+|++|+.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||++|+++.
T Consensus        82 ~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks~  148 (149)
T d1z3da1          82 ADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW  148 (149)
T ss_dssp             TTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                        8999999999999999999999999999999999999999999999999999974

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1.4e-40  Score=256.54  Aligned_cols=129  Identities=26%  Similarity=0.567  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      ..|.|||++|+++|+++++.       +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceE
Confidence            56889999999999998877       56799999999999999999999999999999999999999999999999999


Q ss_pred             c-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          124 L-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       124 ~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                      +                         .|+|++|+++||.+|+.+|.+|++++|+|.+||.+|++|+++|.++||+++.|+
T Consensus        82 ~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k~  161 (164)
T d2ucza_          82 YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS  161 (164)
T ss_dssp             CTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            8                         399999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 048648          179 W  179 (182)
Q Consensus       179 a  179 (182)
                      +
T Consensus       162 ~  162 (164)
T d2ucza_         162 L  162 (164)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=250.56  Aligned_cols=127  Identities=28%  Similarity=0.460  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648           53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--  124 (182)
                      +.|||++|+++|+++++.      .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+  
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   81 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCC
Confidence            569999999999998777      788999999999999999999999999999999999999999999999999999  


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                .|+|++|+++||.+|+++|.+|++++|+|.+||++|+ |+++|.++|+++++|||.
T Consensus        82 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          82 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             CBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTCC
T ss_pred             CccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccCC
Confidence                      8999999999999999999999999999999999995 999999999999999873

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=5.5e-40  Score=249.89  Aligned_cols=128  Identities=21%  Similarity=0.421  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      |.+||++|+++|+++++.       +++|++.|.+.| ||++|||+||+|+|+|.||++||++||+|+|.|+||||||+ 
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            368999999999999877       677999999876 99999999999999999999999999999999999999999 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                  .|+|++|+.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.+
T Consensus        80 ~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~~  148 (150)
T d1wzva1          80 NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD  148 (150)
T ss_dssp             TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred             CCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence                        799999999999999999999999999999999999999999999999999999975

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=1.1e-39  Score=251.17  Aligned_cols=128  Identities=26%  Similarity=0.427  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHcCCCC-------------------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeee
Q 048648           53 QLQQWMRDLKRLQQGAPP-------------------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVP  113 (182)
Q Consensus        53 ~~~RL~~El~~l~~~~~~-------------------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~  113 (182)
                      ..+||++|++++++....                   .++|++.|+++|.||.||||+||+|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            368999999999774321                   5579999999999999999999999999999999999999999


Q ss_pred             eccccccCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          114 FVSGMFHRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       114 f~t~i~HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      |.|++|||||+             .|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t~~~a~  161 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK  161 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhC
Confidence            99999999997             79999999999999999999999999999999999999999999999999999985

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1.9e-39  Score=249.57  Aligned_cols=128  Identities=31%  Similarity=0.509  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648           54 LQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--  124 (182)
                      ..||++|+++|.++++.       +++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+  
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~   81 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE   81 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCC
Confidence            36899999999999877       557899999999999999999999999999999999999999999999999998  


Q ss_pred             -----------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648          125 -----------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA  181 (182)
Q Consensus       125 -----------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~  181 (182)
                                             .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++++++|.++
T Consensus        82 G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~e~  161 (161)
T d1pzva_          82 GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE  161 (161)
T ss_dssp             SBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             CccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence                                   299999999999999999999999999999999999999999999999999999764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.8e-39  Score=245.75  Aligned_cols=125  Identities=31%  Similarity=0.486  Sum_probs=120.5

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648           50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND  123 (182)
Q Consensus        50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI  123 (182)
                      +..|.+||++|+++++++++.      .++|++.|+++|.||+||||+||.|+++|.||++||.+||+|+|.|++|||||
T Consensus         2 ~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   81 (148)
T d1yrva1           2 HGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNV   81 (148)
T ss_dssp             GCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTB
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCce
Confidence            457789999999999998877      88899999999999999999999999999999999999999999999999999


Q ss_pred             c---------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHH
Q 048648          124 L---------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRI  174 (182)
Q Consensus       124 ~---------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~  174 (182)
                      +               +|+|++|+++||.+|+++|.+|+.++|+|.+||++|++|+++|.++||.+
T Consensus        82 ~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          82 DPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             CTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            9               79999999999999999999999999999999999999999999999975

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=6.7e-39  Score=245.56  Aligned_cols=133  Identities=30%  Similarity=0.501  Sum_probs=123.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           47 GGGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        47 ~~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      +.....+.+||++|+++|+++++.      +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~~~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   83 (156)
T d2e2ca_           4 SKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CcccchHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcC
Confidence            334445679999999999998877      88999999999999999999999999999999999999999999999999


Q ss_pred             CCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          121 RNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       121 PnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                      |||+            .|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ |..+|.++|++.++++..
T Consensus        84 pnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~~~  154 (156)
T d2e2ca_          84 PNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHHhc
Confidence            9999            8999999999999999999999999999999999996 667899999999988754

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=6.2e-40  Score=248.09  Aligned_cols=123  Identities=19%  Similarity=0.437  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           55 QQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      |||++|+++|++++..       +++|++.|+++| ||++|||+||+|+|+|.||++||.+||+|+|.|++|||||+   
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   80 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG   80 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccCC
Confidence            7999999999998766       678999999998 99999999999999999999999999999999999999999   


Q ss_pred             ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                                .|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++||
T Consensus        81 ~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          81 QVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             BBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             ccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                      699999999999999999999999999999999999999999999999999886

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=242.42  Aligned_cols=127  Identities=21%  Similarity=0.342  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           51 KCQLQQWMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +.|.+||++|+++|++.+..     +++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+ 
T Consensus         2 ~~a~~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~   80 (157)
T d1y8xa1           2 SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL   80 (157)
T ss_dssp             CHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccc
Confidence            46789999999999865544     678999999999 89999999999999999999999999999999999999999 


Q ss_pred             -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648          125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS  178 (182)
Q Consensus       125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~  178 (182)
                                 .|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++-+
T Consensus        81 ~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1          81 EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred             cceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence                       899999999999999999999999999999999999999999999999998754

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=7e-38  Score=240.33  Aligned_cols=127  Identities=24%  Similarity=0.369  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHcCCCC--CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-------
Q 048648           54 LQQWMRDLKRLQQGAPP--GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-------  124 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~--~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-------  124 (182)
                      .|||++|+++|.+++..  ..+|++.|+++|.||+||||+||+|+|+|.||++||.+||+|+|.|++|||||+       
T Consensus         2 ~rr~~~e~~~l~~~~~~~~~~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~vc   81 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVC   81 (158)
T ss_dssp             CHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBC
T ss_pred             chHHHHHHHHHhcCCCcCCCCCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCccccc
Confidence            48999999999988766  557999999999999999999999999999999999999999999999999997       


Q ss_pred             ------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                            .|+|++++.++|.. |+.|+.+|++++|+|.+||++|++|+++|.++||+++++||.
T Consensus        82 l~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~  144 (158)
T d1yf9a1          82 LDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT  144 (158)
T ss_dssp             HHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence                  89999999999965 678899999999999999999999999999999999999985

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=5e-34  Score=218.37  Aligned_cols=129  Identities=19%  Similarity=0.299  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648           52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-  124 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-  124 (182)
                      +|.+||++|+++|+++++.      +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++|||++ 
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g   80 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCC
Confidence            3789999999999999877      778999999999999999999999999999999999999999999999999998 


Q ss_pred             ------------CCCCcccHHHHHHHHHHhhCCCCCCCh--hh-HHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648          125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSA--AN-QQAATMLTGGRIDYYKKAQRIVELSWK  180 (182)
Q Consensus       125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p--~n-~~a~~~~~~d~~~f~~~ar~~~~~~a~  180 (182)
                                  +|+|++|+++||.+|++||.+|+++..  .+ ..+.++|..+..+|..+++.++++|..
T Consensus        81 ~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~~  151 (157)
T d2f4wa1          81 RLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPE  151 (157)
T ss_dssp             CBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred             CeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        699999999999999999999887642  33 344567888889999999999998764

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=209.68  Aligned_cols=106  Identities=19%  Similarity=0.391  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      ..+.+||++|+++++++.+.          +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            46789999999999998776          44579999999999999999999999999999999999999999999999


Q ss_pred             CCcc---------------CCCCcccHHHHHHHHHHhhCCC-CCCChhhHHH
Q 048648          121 RNDL---------------KWNSDYDVVAIFATIQLMLGDP-NLYSAANQQA  156 (182)
Q Consensus       121 PnI~---------------~W~p~~tl~~il~~I~~ll~~p-~~~~p~n~~a  156 (182)
                      |||+               +|+|++|+++||.+|+++|.+| |.++|.|.|.
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            9998               8999999999999999999876 7888888774

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-32  Score=196.60  Aligned_cols=91  Identities=29%  Similarity=0.513  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCCC--------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc--ccCCc
Q 048648           54 LQQWMRDLKRLQQGAPP--------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM--FHRND  123 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~--------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i--~HPnI  123 (182)
                      .|||++|+++++++++.        .++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++  |||||
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv   84 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV   84 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccccC
Confidence            49999999999998766        457899999999999999999999999999999999999999999987  99999


Q ss_pred             c------------CCCCcccHHHHHHHHHHhhC
Q 048648          124 L------------KWNSDYDVVAIFATIQLMLG  144 (182)
Q Consensus       124 ~------------~W~p~~tl~~il~~I~~ll~  144 (182)
                      +            +|+|++|+++||.+|++||.
T Consensus        85 ~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          85 YSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            8            79999999999999999984

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.97  E-value=9.8e-33  Score=206.62  Aligned_cols=106  Identities=18%  Similarity=0.329  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648           51 KCQLQQWMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH  120 (182)
Q Consensus        51 ~~~~~RL~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H  120 (182)
                      .++..||++||++++++.++          ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            35679999999999997644          33358999999999999999999999999999999999999999999999


Q ss_pred             CCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHH
Q 048648          121 RNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQA  156 (182)
Q Consensus       121 PnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a  156 (182)
                      |||+              +|+|++||++||.+|+++|.+|+....++.++
T Consensus        83 pnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~  132 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE  132 (136)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCT
T ss_pred             cccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence            9998              79999999999999999999887655554443

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=195.05  Aligned_cols=92  Identities=33%  Similarity=0.650  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648           55 QQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---  124 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---  124 (182)
                      -||+||+++++++++.       +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+   
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            5899999999999887       667899999999999999999999999999999999999999999999999999   


Q ss_pred             ----------------------CCCCcccHHHHHHHHHHhhCCC
Q 048648          125 ----------------------KWNSDYDVVAIFATIQLMLGDP  146 (182)
Q Consensus       125 ----------------------~W~p~~tl~~il~~I~~ll~~p  146 (182)
                                            +|+|++|+++||.+|++||.+|
T Consensus        82 ~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          82 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             BBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             EEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence                                  3999999999999999999887

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.96  E-value=4.8e-30  Score=185.14  Aligned_cols=89  Identities=25%  Similarity=0.508  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCcc----
Q 048648           56 QWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRNDL----  124 (182)
Q Consensus        56 RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~----  124 (182)
                      ||++|+++++++++.      +++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ +||||+    
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            899999999999877      889999999999999999999999999999999999999999999986 899999    


Q ss_pred             --------CCCCcccHHHHHHHHHHhhC
Q 048648          125 --------KWNSDYDVVAIFATIQLMLG  144 (182)
Q Consensus       125 --------~W~p~~tl~~il~~I~~ll~  144 (182)
                              +|+|++|+++||.+|++||.
T Consensus        82 iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          82 ICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             BCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             EEeecccCCCCccCCHHHHHHHHHHHhC
Confidence                    89999999999999999984

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-31  Score=206.02  Aligned_cols=124  Identities=16%  Similarity=0.276  Sum_probs=107.3

Q ss_pred             CcHHHHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEec-CCCCCCCCCE-----------EEEEEeeCCCCCC
Q 048648           49 GLKCQLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVG-LGGTLFDGGI-----------FKLTLKFTKEYPV  107 (182)
Q Consensus        49 ~~~~~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~G-p~~tpY~gg~-----------f~~~i~fp~~YP~  107 (182)
                      ++..|.+||++|++++++++..         .++|++.|++.|.| |++|||+||.           |+++|.||++||+
T Consensus         1 gs~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           1 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            3677889999999999877643         56799999999999 8899999986           9999999999999


Q ss_pred             CCCeeeeccccccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCC--CChhhHHHHHHHhhCHHHHHHHH
Q 048648          108 KPPVVPFVSGMFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNL--YSAANQQAATMLTGGRIDYYKKA  171 (182)
Q Consensus       108 ~pP~v~f~t~i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~--~~p~n~~a~~~~~~d~~~f~~~a  171 (182)
                      +||+|+|+|++||||+.              +|+|++||++||.+|+++|.+|++  +.+.|.+++.+. +++++|.+.|
T Consensus        81 ~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~-~~~~~y~~~~  159 (162)
T d1zuoa1          81 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQSYNSIV  159 (162)
T ss_dssp             SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHH-HHHHHHHHHH
T ss_pred             hcceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHH-HhHHHHHHHH
Confidence            99999999999999954              699999999999999999987665  566776666554 5678899988


Q ss_pred             HH
Q 048648          172 QR  173 (182)
Q Consensus       172 r~  173 (182)
                      |.
T Consensus       160 ~~  161 (162)
T d1zuoa1         160 QI  161 (162)
T ss_dssp             HH
T ss_pred             hh
Confidence            75

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.5e-15  Score=111.00  Aligned_cols=90  Identities=14%  Similarity=0.254  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEE--EEeeCCCCCCCCCeeeeccc-----cc
Q 048648           56 QWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKL--TLKFTKEYPVKPPVVPFVSG-----MF  119 (182)
Q Consensus        56 RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i~  119 (182)
                      +..+|+.++.+..+.         .+++...|.+.|.|+.+++|+||.|.+  .|.||++||.+||.|.|.+.     ++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            455677777665543         677889999999999999999999999  55589999999999988764     68


Q ss_pred             cCCcc-----------CCCC-cccHHHHHHHHHHhhCC
Q 048648          120 HRNDL-----------KWNS-DYDVVAIFATIQLMLGD  145 (182)
Q Consensus       120 HPnI~-----------~W~p-~~tl~~il~~I~~ll~~  145 (182)
                      ||||+           +|.+ ..++.+++..|+.+|.+
T Consensus        98 h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             SSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence            99999           7865 56899999999999975

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=4.4e-13  Score=100.63  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCE---EEEEEeeCCCCCCCCCeeeeccc----
Q 048648           54 LQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGI---FKLTLKFTKEYPVKPPVVPFVSG----  117 (182)
Q Consensus        54 ~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~---f~~~i~fp~~YP~~pP~v~f~t~----  117 (182)
                      .+|+.+|+..+.+..+.         .++....+.+.+.|.-..+|+||.   |.+.|-||++||++||.|.|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            35777777777766554         555667788889999999999995   68888899999999999999875    


Q ss_pred             -------cccCCcc-----------CC-CCcccHHHHHHHHHHhhCCCCCC
Q 048648          118 -------MFHRNDL-----------KW-NSDYDVVAIFATIQLMLGDPNLY  149 (182)
Q Consensus       118 -------i~HPnI~-----------~W-~p~~tl~~il~~I~~ll~~p~~~  149 (182)
                             ++||||+           +| .|+.++.+++.+|+.+|.+|..|
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence                   5799999           67 57889999999999999887543

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.034  Score=37.52  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             HHHHHHHHHcCCCC------CCCCcceE--EEEEecCC--CCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCC
Q 048648           57 WMRDLKRLQQGAPP------GDDDIMLR--NAIIVGLG--GTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKW  126 (182)
Q Consensus        57 L~~El~~l~~~~~~------~~~~~~~w--~~~i~Gp~--~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W  126 (182)
                      +..|+..|+.-.+.      ..++...+  .+.+....  +..=......+.+.+|++||..+|.+.+...       .|
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~-------~~   78 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP-------RG   78 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE-------ES
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc-------CC
Confidence            56788888776654      22233333  34443111  1111235688999999999999999987755       35


Q ss_pred             CCcccHHHHHHHHHHhh
Q 048648          127 NSDYDVVAIFATIQLML  143 (182)
Q Consensus       127 ~p~~tl~~il~~I~~ll  143 (182)
                      -+...+..+...|....
T Consensus        79 l~~~~~~~L~~~l~~~~   95 (115)
T d2daya1          79 LSDEQIHTILQVLGHVA   95 (115)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            55555555555555544

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0051  Score=43.95  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCE----------EEEEEeeCCCCCCCCCeeee
Q 048648           52 CQLQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGI----------FKLTLKFTKEYPVKPPVVPF  114 (182)
Q Consensus        52 ~~~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~----------f~~~i~fp~~YP~~pP~v~f  114 (182)
                      .=..||.+|+..|-+.-..   .++|++...   .-+.||-|.|.+          |.+++.+|..||..||.|..
T Consensus        25 ~W~~RLKEEy~aLI~Yv~nNK~~dndWF~le---sn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          25 LWVQRLKEEYQSLIRYVENNKNADNDWFRLE---SNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE---ECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEec---cCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceec
Confidence            4578999999988764333   455554433   347778777743          55666779999999999864

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.98  E-value=0.22  Score=34.24  Aligned_cols=82  Identities=17%  Similarity=0.060  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHcCCCC----CCCC-------cceEEEEEecCC-CCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648           55 QQWMRDLKRLQQGAPP----GDDD-------IMLRNAIIVGLG-GTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN  122 (182)
Q Consensus        55 ~RL~~El~~l~~~~~~----~~~~-------~~~w~~~i~Gp~-~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn  122 (182)
                      .+-..|+..|..-.+.    ..++       .....+.+.... +.......+.+.|.||.+||..+|.+.+...     
T Consensus        13 E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~-----   87 (137)
T d1ukxa_          13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA-----   87 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE-----
T ss_pred             HHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC-----
Confidence            5667788888765544    1111       122344443222 2234446799999999999999999987654     


Q ss_pred             ccCCCCcccHHHHHHHHHHhh
Q 048648          123 DLKWNSDYDVVAIFATIQLML  143 (182)
Q Consensus       123 I~~W~p~~tl~~il~~I~~ll  143 (182)
                        .|-+...+..+...|+...
T Consensus        88 --~~l~~~~~~~L~~~l~~~~  106 (137)
T d1ukxa_          88 --KGLSNESVNLLKSHLEELA  106 (137)
T ss_dssp             --ESSSSSHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHHHH
Confidence              2444444445544454443

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.22  Score=34.18  Aligned_cols=51  Identities=10%  Similarity=-0.022  Sum_probs=37.5

Q ss_pred             CEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhCCCCCCCh
Q 048648           93 GIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDPNLYSA  151 (182)
Q Consensus        93 g~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~~p~~~~p  151 (182)
                      -.+.+.+.+|++||..+|.|...+        .|-+......+...+...+.+-....|
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~--------~~l~~~~~~~l~~~l~~~~~e~~~Ge~  118 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS--------SELDRHQQLLLNKGLTSYIGTFDPGEL  118 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC--------SSSCHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec--------cccCHHHHHHHHHHHHHHHHHhcCCcc
Confidence            457888999999999999987653        366666778888888888765333334

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.17  Score=34.61  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhC
Q 048648           91 DGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLG  144 (182)
Q Consensus        91 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~  144 (182)
                      ......+.+.+|.+||..+|.|...+.        |-+......++..+...+.
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~~--------~l~~~~~~~l~~~l~~~~~  109 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRSV--------LLSRSQQTQLNTDLTAFLQ  109 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEECT--------TSCHHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEEecCcCCCcCCceeccCC--------CCCHHHHHHHHHHHHHHHH
Confidence            345688999999999999999876442        4444455666666666554