Citrus Sinensis ID: 048673

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
sslysrkaseavdyfssigcspciamnpaefpidlangNASLLFFISVFWgffplftatftfpqERAMLAEERSVDMYKLSAYFSarnisdlpldliLPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLsggffiqkgpffMSWLRYISfnnydsyqhhcssdscsppfirelridhsglevWAMMPMIIGYRLVAYLSLRRMKIVTVA
Flexible Loop (DISEMBL)
sslysrkaseAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA
Low Complexity Region (SEG)
SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGffplftatftfpQERAMLAEERSVDMYKLSAYFSARNISdlpldlilpiivlviiCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA
Disordered region (IsUnstruct)
**********AVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT**
Disordered Region (DISOPRED)
*SLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT**
Disordered Region (DISEMBL)
**********AVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSY********CSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA
Disordered Region (DISPRO)
****SRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q93YS4	751	ABC transporter G family	yes	no	0.831	0.268	0.576	6e-61
Q9FT51	737	ABC transporter G family	no	no	0.798	0.263	0.576	1e-59
Q9C6W5	648	ABC transporter G family	no	no	0.855	0.320	0.412	1e-41
Q7XA72	672	ABC transporter G family	no	no	0.757	0.273	0.417	1e-34
Q84TH5	662	ABC transporter G family	no	no	0.814	0.299	0.379	2e-33
Q9SZR9	638	ABC transporter G family	no	no	0.806	0.307	0.395	8e-31
Q9LK50	685	ABC transporter G family	no	no	0.814	0.289	0.308	1e-26
Q64343	666	ATP-binding cassette sub-	yes	no	0.810	0.295	0.270	6e-13
P45844	678	ATP-binding cassette sub-	yes	no	0.810	0.290	0.275	7e-13
P10090	687	Protein white OS=Drosophi	no	no	0.810	0.286	0.243	2e-10

>sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1

 Score =  234 bits (596), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 125/217 (57%), Positives = 154/217 (70%), Gaps = 15/217 (6%)

Query: 32  PIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISD 91
           P+ L +  A LLFFI+VFWGFFP+FTA F FPQERAML +ER+ DMY+LSAYF AR  SD
Sbjct: 543 PMGLQD-QAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSD 601

Query: 92  LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
           LPLD ILP + L+++  M GLR S   F  +MLTVFLCI+AAQGLGL IG   MD+KKA 
Sbjct: 602 LPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKAT 661

Query: 152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYD-------SYQHHCSSDSCSPPFI 204
            LAS+ +MT ML+GGFF++K P F+SW+RY+SFN +         YQ    S       I
Sbjct: 662 TLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDFAVS-------I 714

Query: 205 RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241
             +RID+   EV A++ MI GYRL+AYLSLR+MKIVT
Sbjct: 715 NGMRIDNGLTEVAALVVMIFGYRLLAYLSLRQMKIVT 751

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 155/208 (74%), Gaps = 14/208 (6%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
            + LLFFI+VFWGFFP+FTA FTFPQERAML++ER  +MY+LSAYF AR  SDLPLDLIL
Sbjct: 533 RSGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDLPLDLIL 592

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P++ LV++  M GLR    +F  ++LTVFLCI+AAQGLGL IG + MD+KKA  LAS+ +
Sbjct: 593 PVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGASLMDLKKATTLASVTV 652

Query: 159 MTSMLSGGFFIQKGPFFMSWLRYISFNNYDSY------QHHCSSDSCSPPFIRELRIDHS 212
           MT ML+GG+F++K PFF++W+R++SF NY +Y      Q+    +S +   I       S
Sbjct: 653 MTFMLAGGYFVKKVPFFIAWIRFMSF-NYHTYKLLVKVQYEEIMESVNGEEI------ES 705

Query: 213 GL-EVWAMMPMIIGYRLVAYLSLRRMKI 239
           GL EV A++ MIIGYRLVAY SLRRMK+
Sbjct: 706 GLKEVSALVAMIIGYRLVAYFSLRRMKL 733

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 15/223 (6%)

Query: 32  PIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISD 91
           P        +LLFF SVFWGF+PL+ A FTFPQE+ ML +ERS  MY+LS+YF ARN+ D
Sbjct: 425 PKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGD 484

Query: 92  LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
           LPL+L LP   + II  M GL+P    F  ++L V   +L AQGLGL  G   M++K+A 
Sbjct: 485 LPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQAT 544

Query: 152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNY-----------DSYQHHCSSDS-C 199
            LAS+  +  +++GG+++Q+ P F+ WL+Y+S++ Y           D   + CS    C
Sbjct: 545 TLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWC 604

Query: 200 SP---PFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKI 239
                P I+ + +++  ++V+ M  M++GYRL+AY++L R+K+
Sbjct: 605 RVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVKL 647

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 123/199 (61%), Gaps = 15/199 (7%)

Query: 54  PLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLR 113
           PLF A FTFPQER ML +ERS  +Y+LS+Y+ AR + DLP++LILP I + I   M GL+
Sbjct: 474 PLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILPTIFVTITYWMGGLK 533

Query: 114 PSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGP 173
           PS   F   ++ V   +L AQG+GL +G   MD KKA  L+S++++  +L+GG++IQ  P
Sbjct: 534 PSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLMLVFLLAGGYYIQHIP 593

Query: 174 FFMSWLRYISFNNY------------DSYQHHCSSDSCSP---PFIRELRIDHSGLEVWA 218
            F++WL+Y+SF++Y            D      S   CS      I+ LRI +   +V A
Sbjct: 594 GFIAWLKYVSFSHYCYKLLVGVQYTWDEVYECGSGLHCSVMDYEGIKNLRIGNMMWDVLA 653

Query: 219 MMPMIIGYRLVAYLSLRRM 237
           +  M++ YR++AYL+LR +
Sbjct: 654 LAVMLLLYRVLAYLALRNL 672

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 121/224 (54%), Gaps = 26/224 (11%)

Query: 41  SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPI 100
            LLFFIS+FWG  P F A FTFPQERA+   ER+  MY LS+YF A  +  L ++L+LP 
Sbjct: 438 GLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPA 497

Query: 101 IVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMT 160
             L     MV LRP  + F   +  + L +LA+QGLGL +G A MD KKA  + ++ ++ 
Sbjct: 498 SFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLA 557

Query: 161 SMLSGGFFIQKGPFFMSWLRYISFNNY----------------------DSYQHHCSSDS 198
            +L+GG+++ K P  M W++Y+S   Y                      DS     +S +
Sbjct: 558 FVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAIQYGSGEEILRMLGCDSKGKQGASAA 617

Query: 199 CSPP--FIRELRIDHSGL--EVWAMMPMIIGYRLVAYLSLRRMK 238
            S    F+ E  I   G+   V  +  M  GYR++AYL+LRR+K
Sbjct: 618 TSAGCRFVEEEVIGDVGMWTSVGVLFLMFFGYRVLAYLALRRIK 661

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 19/215 (8%)

Query: 41  SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPI 100
            LLFFIS FW FFPLF   FTFPQERAML +ERS  MY+LS YF +R + DLP++LILP 
Sbjct: 419 GLLFFISSFWAFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPT 478

Query: 101 IVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMT 160
             LVI   M GL  +   F   +L + + +L + GLGL +G   MD K A  L S++++T
Sbjct: 479 CFLVITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLGLALGALVMDQKSATTLGSVIMLT 538

Query: 161 SMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ------------HHCSSDSCSPPFIRELR 208
            +L+GG+++Q  P F+SW++Y+S   Y +Y+            + C  +      + +  
Sbjct: 539 FLLAGGYYVQHVPVFISWIKYVSIGYY-TYKLLILGQYTANELYPCGDNGKLRCHVGDFE 597

Query: 209 -IDHSG-----LEVWAMMPMIIGYRLVAYLSLRRM 237
            I H G     +   A+  M++ YR++AY++L R+
Sbjct: 598 GIKHIGFNSGLVSALALTAMLVVYRVIAYIALTRI 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 16/214 (7%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
              L+F+I +FW    LF A + FP E+  L +ER  +MY+LS Y+    + D+   ++ 
Sbjct: 465 QVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLY 524

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P   ++I+  M     +   F   +LT+ L  + +QG G  +G + + +K+A ++AS+VL
Sbjct: 525 PTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVL 584

Query: 159 MTSMLSGGFFIQKGPFFMSWLRYISFNNY------------DSYQHHCSSDSC----SPP 202
           M  +L+GG+++Q  P FM WL+Y+SF +Y            D      S   C    S  
Sbjct: 585 MLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSS 644

Query: 203 FIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRR 236
               + ++    E+W ++ M  GYRL AY  LR+
Sbjct: 645 SFDTINLNGGLQELWVLLAMAFGYRLCAYFCLRK 678

Arabidopsis thaliana (taxid: 3702)

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
           N+  LFF  +F  F  L     TFP E ++   E     Y L AY+ A+ ++D+P  ++ 
Sbjct: 442 NSGFLFFSMLFLMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIMF 501

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P+    I+  M       + F        +  L AQ LGL+IG A   ++ A  +  +  
Sbjct: 502 PVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTA 561

Query: 159 MTSMLSGGFFI--QKGPFFMSWLRYISFNNY------------DSYQHHCS-SDSC---- 199
           +  +L  GFF+     P ++ W+ YIS+  Y            D    HC  +++C    
Sbjct: 562 IPVLLFSGFFVSFDTIPAYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIAETCHFQK 621

Query: 200 SPPFIRELRIDHSG--LEVWAMMPMIIGYRLVAYLSLR 235
           S   +REL ++++   L+   +    I  RL+AY  LR
Sbjct: 622 SEAILRELDVENAKLYLDFIVLGIFFISLRLIAYFVLR 659

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Mus musculus (taxid: 10090)

>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 21/218 (9%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
           N+  LFF  +F  F  L     TFP E  +   E     Y L AY+ A+ ++D+P  ++ 
Sbjct: 454 NSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMF 513

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P+    I+  M       + F        +  L AQ LGL+IG A   ++ A  +  +  
Sbjct: 514 PVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTA 573

Query: 159 MTSMLSGGFFI--QKGPFFMSWLRYISFNNY------------DSYQHHCSSD-SC---- 199
           +  +L  GFF+     P ++ W+ YIS+  Y            D    HC  D +C    
Sbjct: 574 IPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIDETCHFQK 633

Query: 200 SPPFIRELRIDHSG--LEVWAMMPMIIGYRLVAYLSLR 235
           S   +REL ++++   L+   +    I  RL+AY  LR
Sbjct: 634 SEAILRELDVENAKLYLDFIVLGIFFISLRLIAYFVLR 671

Transporter involved in macrophage lipid homeostasis. Is an active component of the macrophage lipid export complex. Could also be involved in intracellular lipid transport processes. The role in cellular lipid homeostasis may not be limited to macrophages.

Homo sapiens (taxid: 9606)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 33/230 (14%)

Query: 33  IDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDL 92
           + + N N ++  F++    F  +F     F  E  +   E    +Y+   YF  + I++L
Sbjct: 457 VGVMNINGAIFLFLTNM-TFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAEL 515

Query: 93  PLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKI 152
           PL L +P++   I   M+GLR   + F   +  V L    +   G +I  A      A  
Sbjct: 516 PLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALS 575

Query: 153 LASIVLMTSMLSGGFFIQKG--PFFMSWLRYISFNNY-------------DSYQHHCSSD 197
           +   V++  +L GGFF+  G  P ++ WL Y+S+  Y             +  +  C+S 
Sbjct: 576 VGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVEPGEISCTSS 635

Query: 198 SCSPP------------FIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR 235
           + + P               +L +D+ GL +     +I+ +R++AYL+LR
Sbjct: 636 NTTCPSSGKVILETLNFSAADLPLDYVGLAI-----LIVSFRVLAYLALR 680

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
255570356	675	ATP-binding cassette transporter, putati	0.860	0.309	0.617	2e-65
225463881	775	PREDICTED: ABC transporter G family memb	0.876	0.274	0.628	6e-63
296088101	776	unnamed protein product [Vitis vinifera]	0.876	0.274	0.628	7e-63
296089333	738	unnamed protein product [Vitis vinifera]	0.810	0.266	0.573	2e-62
356500545	743	PREDICTED: ABC transporter G family memb	0.839	0.274	0.570	5e-62
356534584	738	PREDICTED: ABC transporter G family memb	0.839	0.276	0.570	8e-62
224138238	744	white-brown-complex ABC transporter fami	0.798	0.260	0.567	2e-59
18415230	751	ABC transporter G family member 22 [Arab	0.831	0.268	0.576	3e-59
255566225	749	ATP-binding cassette transporter, putati	0.814	0.264	0.579	3e-59
219363225	235	uncharacterized protein LOC100216600 [Ze	0.818	0.846	0.589	7e-59

>gi|255570356|ref|XP_002526137.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223534514|gb|EEF36213.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/222 (61%), Positives = 166/222 (74%), Gaps = 13/222 (5%)

Query: 29  AEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARN 88
           A  P DL +  A LLFFISVFWGFFPLFTA FTFPQERAMLA+ER+V MY+LSAYF+ARN
Sbjct: 454 ASSPQDLED-QAGLLFFISVFWGFFPLFTAIFTFPQERAMLAKERAVGMYRLSAYFAARN 512

Query: 89  ISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVK 148
           ISDLPLDLI+P + ++I+  MVGL+ S+ AFS   LTVFL I+A+QGLGL IG AFMDVK
Sbjct: 513 ISDLPLDLIMPTVFMLIVYFMVGLKMSFTAFSLTTLTVFLSIVASQGLGLTIGAAFMDVK 572

Query: 149 KAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ-----HHCSSDS----C 199
           KA  LASI++MT MLSGGFF+Q  P FMSW+RY+SF NY +Y+      +   DS     
Sbjct: 573 KASTLASIIIMTFMLSGGFFLQDVPSFMSWIRYVSF-NYHTYRLLLKIQYSFLDSSPGLS 631

Query: 200 SP--PFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKI 239
           SP  P I +LR+ H   EV AMM MI+ YRL+AYL LR++ +
Sbjct: 632 SPQSPLITDLRLVHGRKEVAAMMVMIVAYRLLAYLFLRKISL 673

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463881|ref|XP_002263430.1| PREDICTED: ABC transporter G family member 22-like [Vitis vinifera]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 142/226 (62%), Positives = 171/226 (75%), Gaps = 13/226 (5%)

Query: 29  AEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARN 88
           A  P  L +  A LLFFISVFWGF PLFTA FTFPQERAML +ERSVDMY+LSAYF ARN
Sbjct: 552 ASSPKKLQD-QAGLLFFISVFWGFLPLFTAIFTFPQERAMLVKERSVDMYRLSAYFVARN 610

Query: 89  ISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVK 148
            SDLPLDLILPI+ ++I+  M GL+PS+ AFS  MLTVFL ILA+QGLG+ IG A MDVK
Sbjct: 611 TSDLPLDLILPILFMLIVYFMAGLKPSFAAFSLTMLTVFLSILASQGLGMTIGAALMDVK 670

Query: 149 KAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSY------QHHCSSDS---- 198
           KA  LASI LMT MLSGGFFIQ+ P F+SW R+ISF NY +Y      Q+ CS+ +    
Sbjct: 671 KATTLASITLMTFMLSGGFFIQEFPSFISWARHISF-NYHTYRLLLKIQYSCSNSNYEEG 729

Query: 199 -CSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA 243
            C+ PFIR L+++ SG+E+ AM+ M IGYRL+AY+ LRRMK+ T+ 
Sbjct: 730 PCNSPFIRGLKLNRSGMELGAMVAMCIGYRLLAYIFLRRMKLRTLT 775

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088101|emb|CBI35490.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 142/226 (62%), Positives = 171/226 (75%), Gaps = 13/226 (5%)

Query: 29  AEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARN 88
           A  P  L +  A LLFFISVFWGF PLFTA FTFPQERAML +ERSVDMY+LSAYF ARN
Sbjct: 553 ASSPKKLQD-QARLLFFISVFWGFLPLFTAIFTFPQERAMLVKERSVDMYRLSAYFVARN 611

Query: 89  ISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVK 148
            SDLPLDLILPI+ ++I+  M GL+PS+ AFS  MLTVFL ILA+QGLG+ IG A MDVK
Sbjct: 612 TSDLPLDLILPILFMLIVYFMAGLKPSFAAFSLTMLTVFLSILASQGLGMTIGAALMDVK 671

Query: 149 KAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSY------QHHCSSDS---- 198
           KA  LASI LMT MLSGGFFIQ+ P F+SW R+ISF NY +Y      Q+ CS+ +    
Sbjct: 672 KATTLASITLMTFMLSGGFFIQEFPSFISWARHISF-NYHTYRLLLKIQYSCSNSNYEEG 730

Query: 199 -CSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA 243
            C+ PFIR L+++ SG+E+ AM+ M IGYRL+AY+ LRRMK+ T+ 
Sbjct: 731 PCNSPFIRGLKLNRSGMELGAMVAMCIGYRLLAYIFLRRMKLRTLT 776

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089333|emb|CBI39105.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/211 (57%), Positives = 155/211 (73%), Gaps = 14/211 (6%)

Query: 40  ASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILP 99
           A LLFFI+VFWGFFP+FTA FTFPQERAML++ER+ DMY+LSAYF AR  SDLPLDLILP
Sbjct: 535 AGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFVARTTSDLPLDLILP 594

Query: 100 IIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLM 159
           ++ L+I+  M GLR    +F   MLTVFLCI+AAQGLGL IG   MD+K+A  LAS+ +M
Sbjct: 595 VLFLIIVYFMAGLRMDAGSFFLTMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVM 654

Query: 160 TSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ-------HHCSSDSCSPPFIRELRIDHS 212
           T ML+GG+F++K P F+SW+RYISF NY +Y+        H +      P +  ++ID  
Sbjct: 655 TFMLAGGYFVKKVPIFISWIRYISF-NYHTYKLLLKVQYEHIT------PNVNGMKIDGG 707

Query: 213 GLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA 243
             EV A++ M+ GYRL+AY+SLRRMK+ T A
Sbjct: 708 LKEVSALVAMVFGYRLLAYISLRRMKLHTGA 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500545|ref|XP_003519092.1| PREDICTED: ABC transporter G family member 22-like [Glycine max]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 157/219 (71%), Gaps = 15/219 (6%)

Query: 32  PIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISD 91
           P DL +  A LLFFI+VFWGFFP+FTA FTFPQERAML++ER+ DMY+LSAYF AR  SD
Sbjct: 533 PKDLQD-QAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSD 591

Query: 92  LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
           LPLDLILP++ L+++  M GLR S   F   +LTVFLCI+AAQGLGL IG   MD+K+A 
Sbjct: 592 LPLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRAT 651

Query: 152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ-------HHCSSDSCSPPFI 204
            LAS+ +MT ML+GGFF+Q+ P F SW+RY+SF NY +Y+        H S      P I
Sbjct: 652 TLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSF-NYHTYKLLLKVQYEHIS------PVI 704

Query: 205 RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA 243
             +RID    EV A++ M+ GYR +AYLSLRRMK+ + A
Sbjct: 705 NGMRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 743

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534584|ref|XP_003535833.1| PREDICTED: ABC transporter G family member 22-like [Glycine max]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 157/219 (71%), Gaps = 15/219 (6%)

Query: 32  PIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISD 91
           P DL +  A LLFFI+VFWGFFP+FTA FTFPQERAML++ER+ DMY+LSAYF AR  SD
Sbjct: 528 PKDLQD-QAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSD 586

Query: 92  LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
           LPLDLILP++ L+++  M GLR S   F   +LTVFLCI+AAQGLGL IG   MD+K+A 
Sbjct: 587 LPLDLILPVLFLLVVYFMAGLRLSVAPFFLTVLTVFLCIVAAQGLGLAIGATLMDLKRAT 646

Query: 152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ-------HHCSSDSCSPPFI 204
            LAS+ +MT ML+GGFF+Q+ P F SW+RY+SF NY +Y+        H S      P I
Sbjct: 647 TLASVTVMTFMLAGGFFVQRVPIFFSWIRYMSF-NYHTYKLLLKVQYEHIS------PVI 699

Query: 205 RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTVA 243
             +RID    EV A++ M+ GYR +AYLSLRRMK+ + A
Sbjct: 700 NGIRIDSGATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 738

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138238|ref|XP_002322764.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867394|gb|EEF04525.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/208 (56%), Positives = 150/208 (72%), Gaps = 14/208 (6%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
            A LLFFI+VFWGFFP+FTA FTFPQERAML++ER+ DMY+LSAYF AR  SDLPLDLIL
Sbjct: 542 QAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLIL 601

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P++ L+++  M GLR S   F   MLTVFLCI+AAQGLGL IG   MD+K+A  LAS+ +
Sbjct: 602 PVLFLLVVYFMAGLRLSAAPFFLTMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTV 661

Query: 159 MTSMLSGGFFIQKGPFFMSWLRYISFNNYD-------SYQHHCSSDSCSPPFIRELRIDH 211
           MT ML+GG+F++K P F+SW+RY+SFN +         Y+H         P I  + ID 
Sbjct: 662 MTFMLAGGYFVKKVPVFVSWIRYMSFNYHTYKLLLKVQYEHMT-------PAINGIGIDG 714

Query: 212 SGLEVWAMMPMIIGYRLVAYLSLRRMKI 239
              EV A++ M+ GYRL+AY+SLRRMK+
Sbjct: 715 GLTEVSALVAMVFGYRLLAYISLRRMKL 742

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415230|ref|NP_568169.1| ABC transporter G family member 22 [Arabidopsis thaliana] gi|79597808|ref|NP_850781.2| ABC transporter G family member 22 [Arabidopsis thaliana] gi|75331764|sp|Q93YS4.1|AB22G_ARATH RecName: Full=ABC transporter G family member 22; Short=ABC transporter ABCG.22; Short=AtABCG22; AltName: Full=White-brown complex homolog protein 23; Short=AtWBC23 gi|16604685|gb|AAL24135.1| putative ABC transporter protein [Arabidopsis thaliana] gi|21280994|gb|AAM45116.1| putative ABC transporter protein [Arabidopsis thaliana] gi|222424266|dbj|BAH20090.1| AT5G06530 [Arabidopsis thaliana] gi|332003646|gb|AED91029.1| ABC transporter G family member 22 [Arabidopsis thaliana] gi|332003647|gb|AED91030.1| ABC transporter G family member 22 [Arabidopsis thaliana]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/217 (57%), Positives = 154/217 (70%), Gaps = 15/217 (6%)

Query: 32  PIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISD 91
           P+ L +  A LLFFI+VFWGFFP+FTA F FPQERAML +ER+ DMY+LSAYF AR  SD
Sbjct: 543 PMGLQD-QAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSD 601

Query: 92  LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
           LPLD ILP + L+++  M GLR S   F  +MLTVFLCI+AAQGLGL IG   MD+KKA 
Sbjct: 602 LPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKAT 661

Query: 152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYD-------SYQHHCSSDSCSPPFI 204
            LAS+ +MT ML+GGFF++K P F+SW+RY+SFN +         YQ    S       I
Sbjct: 662 TLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDFAVS-------I 714

Query: 205 RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241
             +RID+   EV A++ MI GYRL+AYLSLR+MKIVT
Sbjct: 715 NGMRIDNGLTEVAALVVMIFGYRLLAYLSLRQMKIVT 751

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566225|ref|XP_002524100.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536668|gb|EEF38310.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 153/202 (75%), Gaps = 4/202 (1%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
            + LLFFI+VFWGFFP+FTA FTFPQERAML +ER+ DMY+LSAYF AR  SDLPLDLIL
Sbjct: 544 QSGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLIL 603

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           P++ L+++  M GLR S   F  ++LTVFLCI+AAQGLGL IG   MD+KKA  LAS+ +
Sbjct: 604 PVLFLLVVYFMAGLRMSAGPFFLSLLTVFLCIVAAQGLGLAIGATLMDLKKATTLASVTV 663

Query: 159 MTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ--HHCSSDSCSPPFIRELRIDHSGLEV 216
           MT ML+GG+F++K P F++W+RY+SF NY +Y+       +  SPP I  +RI +   EV
Sbjct: 664 MTFMLAGGYFVKKVPIFVAWIRYLSF-NYHTYKLLLKVQYEDISPP-INGIRIGNGVTEV 721

Query: 217 WAMMPMIIGYRLVAYLSLRRMK 238
            A++ M+ GYRL+AY+SLR+MK
Sbjct: 722 SALVAMVFGYRLLAYISLRKMK 743

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219363225|ref|NP_001136485.1| uncharacterized protein LOC100216600 [Zea mays] gi|194695894|gb|ACF82031.1| unknown [Zea mays]

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 146/202 (72%), Gaps = 3/202 (1%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
            A LLFFI+VFWGFFP+FTA FTFPQERAML +ER+VDMYKLSAYF AR  SDLPLDL L
Sbjct: 31  QAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAVDMYKLSAYFLARTTSDLPLDLFL 90

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
           PII +VI+  M GL+ +   F  +MLTVFL I+AAQGLGL IG   +D+KKA  LAS+ +
Sbjct: 91  PIIFMVIVYFMAGLKATATHFFLSMLTVFLSIIAAQGLGLAIGATLLDIKKATTLASVTV 150

Query: 159 MTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQ--HHCSSDSCSPPFIRELRIDHSGLEV 216
           MT ML+GGFF++  P F+SWLRY+SF NY +Y+       D           +D  G EV
Sbjct: 151 MTFMLAGGFFVKSVPPFISWLRYLSF-NYHTYRLLLKVQYDPVPDILTTTRHMDSGGTEV 209

Query: 217 WAMMPMIIGYRLVAYLSLRRMK 238
            A++ M+IGYR++AYLSLRR K
Sbjct: 210 AALVAMVIGYRVLAYLSLRRAK 231

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2144133	751	ABCG22 "ATP-binding cassette G	0.855	0.276	0.502	4.3e-57
TAIR|locus:2028656	648	ABCG14 "ATP-binding cassette G	0.818	0.307	0.345	2.2e-37
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.600	0.220	0.363	6.7e-35
TAIR|locus:2090009	685	ABCG26 "ATP-binding cassette G	0.802	0.284	0.298	4.4e-28
ZFIN|ZDB-GENE-050517-36	618	abcg2b "ATP-binding cassette,	0.646	0.254	0.243	6.4e-09
FB|FBgn0020445	1017	E23 "Early gene at 23" [Drosop	0.600	0.143	0.256	1.8e-08
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.633	0.224	0.216	2.6e-08
UNIPROTKB|Q4GZT4	655	ABCG2 "ATP-binding cassette su	0.650	0.241	0.230	8e-08
UNIPROTKB|B2D1N9	658	ABCG2 "ATP-binding cassette su	0.650	0.240	0.230	8.2e-08
ZFIN|ZDB-GENE-070424-84	673	abcg1 "ATP-binding cassette, s	0.613	0.221	0.231	2e-07

TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
 Identities = 106/211 (50%), Positives = 131/211 (62%)

Query:    32 PIDLANGNASLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISX 91
             P+ L +  A LLFFI+VFWG            QERAML +ER+ DMY+LSAYF AR  S 
Sbjct:   543 PMGLQD-QAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSD 601

Query:    92 XXXXXXXXXXXXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAK 151
                              M GLR S   F  +MLTVFLCI+AAQGLGL IG   MD+KKA 
Sbjct:   602 LPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKAT 661

Query:   152 ILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCS-PPFIRELRID 210
              LAS+ +MT ML+GGFF++K P F+SW+RY+SFN Y +Y+             I  +RID
Sbjct:   662 TLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFN-YHTYKLLLKVQYQDFAVSINGMRID 720

Query:   211 HSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241
             +   EV A++ MI GYRL+AYLSLR+MKIVT
Sbjct:   721 NGLTEVAALVVMIFGYRLLAYLSLRQMKIVT 751

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010148 "transpiration" evidence=IMP

TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
 Identities = 74/214 (34%), Positives = 117/214 (54%)

Query:    41 SLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXXXXXXXXXX 100
             +LLFF SVFWG            QE+ ML +ERS  MY+LS+YF ARN+           
Sbjct:   434 ALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPT 493

Query:   101 XXXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMT 160
                     M GL+P    F  ++L V   +L AQGLGL  G   M++K+A  LAS+  + 
Sbjct:   494 AFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLV 553

Query:   161 SMLSGGFFIQKGPFFMSWLRYISFNNY-----------DSYQHHCSSDS-CSP---PFIR 205
              +++GG+++Q+ P F+ WL+Y+S++ Y           D   + CS    C     P I+
Sbjct:   554 FLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRVGDFPAIK 613

Query:   206 ELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKI 239
              + +++  ++V+ M  M++GYRL+AY++L R+K+
Sbjct:   614 SMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVKL 647

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 6.7e-35, Sum P(3) = 6.7e-35
 Identities = 53/146 (36%), Positives = 77/146 (52%)

Query:    42 LLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXXXXXXXXXXX 101
             LLFFIS+FWG            QERA+   ER+  MY LS+YF A  +            
Sbjct:   439 LLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPAS 498

Query:   102 XXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTS 161
                    MV LRP  + F   +  + L +LA+QGLGL +G A MD KKA  + ++ ++  
Sbjct:   499 FLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLAF 558

Query:   162 MLSGGFFIQKGPFFMSWLRYISFNNY 187
             +L+GG+++ K P  M W++Y+S   Y
Sbjct:   559 VLTGGYYVNKVPSGMVWMKYVSTTFY 584

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 4.4e-28, Sum P(2) = 4.4e-28
 Identities = 63/211 (29%), Positives = 100/211 (47%)

Query:    42 LLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXXXXXXXXXXX 101
             L+F+I +FW              E+  L +ER  +MY+LS Y+    +            
Sbjct:   468 LMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTF 527

Query:   102 XXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTS 161
                    M     +   F   +LT+ L  + +QG G  +G + + +K+A ++AS+VLM  
Sbjct:   528 FMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLF 587

Query:   162 MLSGGFFIQKGPFFMSWLRYISFNNYDS---YQHHCSSDS---C-SPPFIRELRIDHS-- 212
             +L+GG+++Q  P FM WL+Y+SF +Y      +   S+D    C S    R L+   S  
Sbjct:   588 LLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFD 647

Query:   213 ------GL-EVWAMMPMIIGYRLVAYLSLRR 236
                   GL E+W ++ M  GYRL AY  LR+
Sbjct:   648 TINLNGGLQELWVLLAMAFGYRLCAYFCLRK 678

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009555 "pollen development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

ZFIN|ZDB-GENE-050517-36 abcg2b "ATP-binding cassette, sub-family G (WHITE), member 2b" [Danio rerio (taxid:7955)]

 Score = 117 (46.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
 Identities = 40/164 (24%), Positives = 64/164 (39%)

Query:    28 PAEFPIDLANGNASLLFFI-SVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSA 86
             P   P  L N   +  F I ++ +G             ERA+   E S   Y+ S YF +
Sbjct:   389 PLTLPEALQNRIGAFFFLIINMVFGNLSAVELFI---NERAIFVHENSGGYYRTSVYFLS 445

Query:    87 RN-ISXXXXXXXXXXXXXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFM 145
             +  +                   M+GL P++ +F    LTV L  LA   L  ++  +  
Sbjct:   446 KVFVDLLPNRIVPILIFSSISYYMMGLNPAFTSFLCFALTVSLVSLAGVSLAFLVSASVS 505

Query:   146 DVKKAKILASIVLMTSMLSGGFFIQKGPF--FMSWLRYISFNNY 187
                 A IL  +  +  M+ GGF +       ++SWL++ S   Y
Sbjct:   506 TFAMANILVVLPFVFMMVFGGFLVNLNSMLNWLSWLKWTSIFKY 549

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 39/152 (25%), Positives = 70/152 (46%)

Query:    43 LFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXXXXXXXXXXXX 102
             +FF   +W              ER ++++ER    Y+LSAY+ A+  +            
Sbjct:   793 MFFSQTYWMLFALFGALNSFPSEREVVSKERRSGAYRLSAYYLAKMCAELPLVITLPTVY 852

Query:   103 XXXXCVMVGLRPSYIAFSQNMLTVFLCI--LAAQGLGLIIGVAFMDVKKAKILASIVLMT 160
                   M+G     + F   ++ +FL I  + AQ +G  IG   MD+  +  L+++  + 
Sbjct:   853 LMISYPMLGCTSLKLFF---LMLIFLLINTIVAQSVGFFIGACCMDMNVSITLSALYTLA 909

Query:   161 SMLSGGFFIQKGPFFMSWLRYISFNNYDSYQH 192
             + L GG+   + P  +SW+RY S  +Y +YQ+
Sbjct:   910 TQLFGGYLSSRIPEGLSWIRYTSMIHY-AYQN 940

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=NAS

GO:0005215 "transporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IDA;IMP

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
 Identities = 34/157 (21%), Positives = 60/157 (38%)

Query:    33 IDLANGNASLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXX 92
             + + N N ++  F++                +    + E RS  +Y+   YF  + I+  
Sbjct:   457 VGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARS-RLYRCDTYFLGKTIAEL 515

Query:    93 XXXXXXXXXXXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKI 152
                             M+GLR   + F   +  V L    +   G +I  A      A  
Sbjct:   516 PLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALS 575

Query:   153 LASIVLMTSMLSGGFFIQKG--PFFMSWLRYISFNNY 187
             +   V++  +L GGFF+  G  P ++ WL Y+S+  Y
Sbjct:   576 VGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRY 612

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
 Identities = 39/169 (23%), Positives = 71/169 (42%)

Query:    32 PIDLANGNASLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISX 91
             P  + N  A +LFF++                +++  + E  S   Y++S+YF  + +S 
Sbjct:   420 PAGIQN-RAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYIS-GYYRVSSYFFGKLLSD 477

Query:    92 XXXXXXXXXXXXXXXCV---MVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVK 148
                            C+   ++GL+P   AF   MLT+ +   +A  + L I      V 
Sbjct:   478 LLPMRMLPSIIFT--CITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAGQSVVS 535

Query:   149 KAKILASIVLMTSMLSGGFFIQKGPF--FMSWLRYISFNNYD--SYQHH 193
              A +L +I  +  M+  G  +       ++SWL+Y+S   Y   + QH+
Sbjct:   536 IATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAALQHN 584

GO:0005886 "plasma membrane" evidence=IEA

GO:0046415 "urate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
 Identities = 39/169 (23%), Positives = 71/169 (42%)

Query:    32 PIDLANGNASLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISX 91
             P  + N  A +LFF++                +++  + E  S   Y++S+YF  + +S 
Sbjct:   423 PAGIQN-RAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYIS-GYYRVSSYFFGKLLSD 480

Query:    92 XXXXXXXXXXXXXXXCV---MVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVK 148
                            C+   ++GL+P   AF   MLT+ +   +A  + L I      V 
Sbjct:   481 LLPMRMLPSIIFT--CITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAGQSVVS 538

Query:   149 KAKILASIVLMTSMLSGGFFIQKGPF--FMSWLRYISFNNYD--SYQHH 193
              A +L +I  +  M+  G  +       ++SWL+Y+S   Y   + QH+
Sbjct:   539 IATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAALQHN 587

GO:0046415 "urate metabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
 Identities = 35/151 (23%), Positives = 56/151 (37%)

Query:    39 NASLLFFISVFWGXXXXXXXXXXXXQERAMLAEERSVDMYKLSAYFSARNISXXXXXXXX 98
             N+  LFF  +F               E  +   E     Y L AY+ A+ ++        
Sbjct:   449 NSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIVF 508

Query:    99 XXXXXXXXCVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
                       M       + F   +    L  L AQ LGL+IG A   ++ A  +  +  
Sbjct:   509 PVAYCSIVYWMTSQPSDAVRFILFLALGTLTSLVAQSLGLLIGAASTSLQVATFVGPVTA 568

Query:   159 MTSMLSGGFFIQKG--PFFMSWLRYISFNNY 187
             +  +L  GFF+     P ++ W+ YIS+  Y
Sbjct:   569 IPVLLFSGFFVSFDTIPKYLQWISYISYVRY 599

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027138001 SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (748 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-51
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-23
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	2e-17
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-08
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-05

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  176 bits (449), Expect = 1e-51
 Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 23/219 (10%)

Query: 42  LLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPII 101
           LLFFIS+FWG FP F + F FPQERA+  +ER+  MY LS+YF AR + DLP++LILP I
Sbjct: 441 LLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500

Query: 102 VLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTS 161
            L +   M GL+P   AF   +L +   +L +QGLGL +G A MD KKA  + ++ ++  
Sbjct: 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAF 560

Query: 162 MLSGGFFIQKGPFFMSWLRYISFNNYDSYQ--------------------HHCSSDSCSP 201
           +L+GGF++ K P  M+W++YIS   Y SY+                        SD  S 
Sbjct: 561 VLTGGFYVHKLPSCMAWIKYISTTFY-SYRLLINVQYGEGKRISSLLGCSLPHGSDRASC 619

Query: 202 PFIRELRIDHSG--LEVWAMMPMIIGYRLVAYLSLRRMK 238
            F+ E           V  ++ M +GYRL+AYL+LRR+K
Sbjct: 620 KFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658

Length = 659

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 43  LFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIV 102
           LF       F  +F     F  E  +   E    +Y++SAYF A+ I++LPL +ILP + 
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455

Query: 103 LVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSM 162
             I   M+GLR     F   +  V L    A   G +I  AF     A  +    ++  +
Sbjct: 456 TSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFL 515

Query: 163 LSGGFFIQKG--PFFMSWLRYISF----------NNYDSYQH----HCSSDSCSPPFIRE 206
           L GGFFI     P +  WL Y+S+          N +    +      ++    P     
Sbjct: 516 LFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575

Query: 207 L------RIDHSGLEVWAMMPMIIGYRLVAYLSLRR 236
           +      R     L++  ++ +I  +RL+AY +LR 
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 39  NASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLIL 98
              LLFF  +F  F  L   +  F +ER +L  E +  +Y  SAY  A+ + +LP+ L+ 
Sbjct: 52  RPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQ 111

Query: 99  PIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158
            II L+I+  MVGL  S   F   +L + L  LAA GLGL I       + A  +  ++L
Sbjct: 112 AIIFLLIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLL 169

Query: 159 MTSMLSGGFFIQKG--PFFMSWLRYISFNNY 187
           +  +L  GFFI     P ++ W+ Y++   Y
Sbjct: 170 LPLLLLSGFFIPVDSMPGWLQWIYYLNPLTY 200

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 3/145 (2%)

Query: 41  SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPI 100
             LFF ++ +  F       +  + R ++ + R   +Y  SA   A  IS++P  +I  +
Sbjct: 455 GALFF-AILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESV 513

Query: 101 IVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMT 160
           +  +I+  MV  R +   F   +L +F+C LA   L   IG     + +A   A+I+L+ 
Sbjct: 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLA 573

Query: 161 SMLSGGFFIQKG--PFFMSWLRYIS 183
             +  GF I +     +  W+ Y++
Sbjct: 574 LSIYTGFAIPRPSMLGWSKWIYYVN 598

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 3   LYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANG 38
           L+  K S+A+ YF S+G SP   MNPA+F +DLANG
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANG 321

Length = 659

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.97
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.72
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.67
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.65
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.65
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.61
PRK15066	257	inner membrane transport permease; Provisional	99.52
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.45
TIGR01248	152	drrC daunorubicin resistance protein C. The model	99.4
COG0842	286	ABC-type multidrug transport system, permease comp	99.39
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.93
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	98.66
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.41
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.41
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	98.11
COG1277	278	NosY ABC-type transport system involved in multi-c	97.56
COG1511	780	Predicted membrane protein [Function unknown]	97.07
COG4587	268	ABC-type uncharacterized transport system, permeas	96.98
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	96.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.91
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	96.71
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	96.43
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	96.3
PF06422	103	PDR_CDR: CDR ABC transporter; InterPro: IPR010929	95.75
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	95.26
TIGR03732	241	lanti_perm_MutE lantibiotic protection ABC transpo	94.09
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	94.04
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	93.7
COG4200	239	Uncharacterized protein conserved in bacteria [Fun	93.42
COG2386	221	CcmB ABC-type transport system involved in cytochr	88.73
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	85.95
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	85.63
PF08370	65	PDR_assoc: Plant PDR ABC transporter associated; I	82.03

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.1e-42  Score=324.28  Aligned_cols=237  Identities=44%  Similarity=0.793  Sum_probs=214.8

Q ss_pred             CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcC------------------------------------------
Q 048673            1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANG------------------------------------------   38 (243)
Q Consensus         1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~------------------------------------------   38 (243)
                      |++|+|+++++++||+++|++||++.|||||++|+++.                                          
T Consensus       284 ~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  363 (659)
T PLN03211        284 RCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQ  363 (659)
T ss_pred             cEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhc
Confidence            57899999999999999999999999999999988531                                          


Q ss_pred             -----------C---------------------------------------------------------------ccHHH
Q 048673           39 -----------N---------------------------------------------------------------ASLLF   44 (243)
Q Consensus        39 -----------~---------------------------------------------------------------~g~lf   44 (243)
                                 +                                                               .|++|
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lf  443 (659)
T PLN03211        364 ANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLF  443 (659)
T ss_pred             chhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                       0                                                               18888


Q ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 048673           45 FISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNML  124 (243)
Q Consensus        45 ~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~  124 (243)
                      +++++..+.+.+.+++.++.||+++.||+.+|+|++.+|++||+++++|+.++.+++|.+++|||+|+++++++|+.+++
T Consensus       444 f~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l  523 (659)
T PLN03211        444 FISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLL  523 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHH
Confidence            88888888887899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC-
Q 048673          125 TVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP-  202 (243)
Q Consensus       125 ~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~-  202 (243)
                      ++++..++++++|++++++++|.+.|+.+++++..+++++||+++++||+||+|++|+||++| ++++++. ||.+.+. 
T Consensus       524 i~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y-~~eal~~nef~~~~~~  602 (659)
T PLN03211        524 VLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFY-SYRLLINVQYGEGKRI  602 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHH-HHHHHHHHhcCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999987 9999998 8864211 


Q ss_pred             ----Ccc----------------cccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673          203 ----FIR----------------ELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMK  238 (243)
Q Consensus       203 ----~~~----------------g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~  238 (243)
                          .|.                +.+..+.|.++++|+++.+++++++|+.|++++
T Consensus       603 ~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~  658 (659)
T PLN03211        603 SSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK  658 (659)
T ss_pred             ccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                011                111235799999999999999999999998765

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.8e-41  Score=315.43  Aligned_cols=240  Identities=28%  Similarity=0.418  Sum_probs=218.5

Q ss_pred             CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673            1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN-----------------------------------------   39 (243)
Q Consensus         1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~-----------------------------------------   39 (243)
                      |++|+||++++.+||+++|++||++.||+||++|+++.+                                         
T Consensus       244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  323 (617)
T TIGR00955       244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGL  323 (617)
T ss_pred             eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccc
Confidence            578999999999999999999999999999999987521                                         


Q ss_pred             ---------------------------------------------------------------------ccHHHHHHHHH
Q 048673           40 ---------------------------------------------------------------------ASLLFFISVFW   50 (243)
Q Consensus        40 ---------------------------------------------------------------------~g~lf~~~~~~   50 (243)
                                                                                           .|++|++....
T Consensus       324 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~  403 (617)
T TIGR00955       324 VKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNM  403 (617)
T ss_pred             ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                                                                 06788888888


Q ss_pred             HHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 048673           51 GFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCI  130 (243)
Q Consensus        51 ~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~  130 (243)
                      .+.+++..++.++.||+++.||+.+|+|++.+|++||+++++|..++.+++|.++.||++|+++++++|+.+++++++..
T Consensus       404 ~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~  483 (617)
T TIGR00955       404 TFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA  483 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHH
Confidence            88877788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC-C---
Q 048673          131 LAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP-F---  203 (243)
Q Consensus       131 l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~-~---  203 (243)
                      ++++++|+++++++||.+.|..+++++++++++++|+++|  +||+|++|++|+||++| ++++++. ||.+... .   
T Consensus       484 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y-a~~al~~nef~~~~~~~c~~  562 (617)
T TIGR00955       484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRY-GNEGLLINQWSDVDNIECTS  562 (617)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHH-HHHHHHHHHhCCCccccccC
Confidence            9999999999999999999999999999999999999998  99999999999999987 9999998 8865321 0   


Q ss_pred             ------c----------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673          204 ------I----------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT  241 (243)
Q Consensus       204 ------~----------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~  241 (243)
                            +          .|.+.++.|.++++|++++++|++++++.|+++.+++
T Consensus       563 ~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~  616 (617)
T TIGR00955       563 ANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK  616 (617)
T ss_pred             cCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                  1          1333446899999999999999999999999987664

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-40  Score=304.72  Aligned_cols=241  Identities=32%  Similarity=0.559  Sum_probs=220.6

Q ss_pred             CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcC-----------------------C------------------
Q 048673            1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANG-----------------------N------------------   39 (243)
Q Consensus         1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~-----------------------~------------------   39 (243)
                      +++|+|+++++.+||+++|++||++.||+||++|+++.                       +                  
T Consensus       248 ~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (613)
T KOG0061|consen  248 EVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK  327 (613)
T ss_pred             cEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc
Confidence            57999999999999999999999999999999998872                       0                  


Q ss_pred             --------------------------------------------------------------ccHHHHHHHHHHHHHHHH
Q 048673           40 --------------------------------------------------------------ASLLFFISVFWGFFPLFT   57 (243)
Q Consensus        40 --------------------------------------------------------------~g~lf~~~~~~~~~~~~~   57 (243)
                                                                                    .|++|+.+..+.+..+++
T Consensus       328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~  407 (613)
T KOG0061|consen  328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFG  407 (613)
T ss_pred             cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                                          177888888888888888


Q ss_pred             HHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 048673           58 ATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLG  137 (243)
Q Consensus        58 ~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg  137 (243)
                      +++.|+.||+++.||+++|+|+.++|++||+++++|+.++.+++|..++||++|++++..+|..+.+++++..++++++|
T Consensus       408 ~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~  487 (613)
T KOG0061|consen  408 AVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLG  487 (613)
T ss_pred             HHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC--CCCC--------c
Q 048673          138 LIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC--SPPF--------I  204 (243)
Q Consensus       138 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~--~~~~--------~  204 (243)
                      ++++++++|...|..+++++..++++++|++++  ++|.|++|++|+|+.|| ++|++.. ||.+  ....        .
T Consensus       488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry-~~e~l~~n~~~~~~~~~~~~~~~~~~~  566 (613)
T KOG0061|consen  488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRY-AFEALLINQFSGGSSRCFLSGNLCCES  566 (613)
T ss_pred             HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHH-HHHHHHHHHhhccccccccCcCCcccc
Confidence            999999999999999999999999999999998  99999999999999988 9999999 8874  1110        1


Q ss_pred             --------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 048673          205 --------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTV  242 (243)
Q Consensus       205 --------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~~  242 (243)
                              .|.+.++.|.|+.+++++.++|++++|..|+++.|++.
T Consensus       567 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~  612 (613)
T KOG0061|consen  567 TGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR  612 (613)
T ss_pred             cHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence                    12223468999999999999999999999999988764

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=5.4e-40  Score=326.16  Aligned_cols=236  Identities=18%  Similarity=0.252  Sum_probs=213.2

Q ss_pred             CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673            1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN-----------------------------------------   39 (243)
Q Consensus         1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~-----------------------------------------   39 (243)
                      |++|+||++++++||+++||+||+++|||||++|+++++                                         
T Consensus       415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  494 (1470)
T PLN03140        415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVP  494 (1470)
T ss_pred             eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhh
Confidence            578999999999999999999999999999999886520                                         


Q ss_pred             ----------------------------------------------------------------------------ccHH
Q 048673           40 ----------------------------------------------------------------------------ASLL   43 (243)
Q Consensus        40 ----------------------------------------------------------------------------~g~l   43 (243)
                                                                                                  .|++
T Consensus       495 ~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~l  574 (1470)
T PLN03140        495 FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL  574 (1470)
T ss_pred             hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence                                                                                        0677


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 048673           44 FFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNM  123 (243)
Q Consensus        44 f~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~  123 (243)
                      |+++++.++.+ +..+..++.||++|.|||+.++|++++|++|+.+.++|+.++.++++.+++|||+|+++++++|+.++
T Consensus       575 ff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~  653 (1470)
T PLN03140        575 LFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQL  653 (1470)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHH
Confidence            77777777766 58889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCC
Q 048673          124 LTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCS  200 (243)
Q Consensus       124 ~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~  200 (243)
                      +++++..+++++++.+++++++|...|+.+++++++++++++||++|  +||+||+|++|+||++| ++++++. ||.++
T Consensus       654 l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Y-a~eal~~NEf~~~  732 (1470)
T PLN03140        654 LLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSY-GFNALAVNEMFAP  732 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHH-HHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999  99999999999999987 9999999 98654


Q ss_pred             CC---------Ccccc--------ccc--chHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673          201 PP---------FIREL--------RID--HSGLEVWAMMPMIIGYRLVAYLSLRRMK  238 (243)
Q Consensus       201 ~~---------~~~g~--------~~~--~~~~~~~~L~~~~i~~~~la~~~L~~~~  238 (243)
                      ..         ...|.        +.+  ..|.++++|+++.++|+++++++|++.+
T Consensus       733 ~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~  789 (1470)
T PLN03140        733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN  789 (1470)
T ss_pred             cccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21         11222        222  3589999999999999999999999876

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=8.7e-40  Score=325.10  Aligned_cols=197  Identities=21%  Similarity=0.286  Sum_probs=179.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |++|+++++.++++ +..+..+..||+++.||+++++|++++|++|++++++|+.++.+++|.+++|||+|++.++++|+
T Consensus       455 g~lf~~~~~~~~~~-~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff  533 (1394)
T TIGR00956       455 GALFFAILFNAFSS-LLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFF  533 (1394)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHH
Confidence            88999999988887 46677778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-cc
Q 048673          121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SD  197 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f  197 (243)
                      .+++++++..+++++++.++++++||.+.|+.+++++++++++++||++|  +||+|++|++|+||++| ++++++. ||
T Consensus       534 ~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~y-afeal~~nef  612 (1394)
T TIGR00956       534 FYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAY-AFESLMVNEF  612 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHH-HHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999  99999999999999987 9999998 88


Q ss_pred             CCCCC--------------------------------Cccc---------ccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 048673          198 SCSPP--------------------------------FIRE---------LRIDHSGLEVWAMMPMIIGYRLVAYLSLRR  236 (243)
Q Consensus       198 ~~~~~--------------------------------~~~g---------~~~~~~~~~~~~L~~~~i~~~~la~~~L~~  236 (243)
                      ++...                                .+.|         .+.++.|+|+++|+++.++|++++++.+++
T Consensus       613 ~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~  692 (1394)
T TIGR00956       613 HGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF  692 (1394)
T ss_pred             cCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54210                                0122         123468999999999999999999999998


Q ss_pred             hhh
Q 048673          237 MKI  239 (243)
Q Consensus       237 ~~~  239 (243)
                      .++
T Consensus       693 ~~~  695 (1394)
T TIGR00956       693 NKG  695 (1394)
T ss_pred             ccc
Confidence            763

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.5e-38  Score=315.95  Aligned_cols=200  Identities=19%  Similarity=0.216  Sum_probs=181.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |++|+.+++.++....+.++.+..||++|.||+.+|+|++.+|++|++++|+|+.++.+++|.+++|||+|++.+++.|+
T Consensus      1249 g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~ 1328 (1470)
T PLN03140       1249 GAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFF 1328 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Confidence            56677777777766667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-cc
Q 048673          121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SD  197 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f  197 (243)
                      .+++++++..++++++|+++++++||.+.|..+++++..++++|+|+++|  +||+||+|++|+||++| ++++++. ||
T Consensus      1329 ~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y-~~~~l~~~~f 1407 (1470)
T PLN03140       1329 WFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAW-TVYGLIVSQY 1407 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHH-HHhhhHHHHh
Confidence            99999999999999999999999999999999999999999999999999  99999999999999987 9999998 98


Q ss_pred             CCCCC--Cc----------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673          198 SCSPP--FI----------------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT  241 (243)
Q Consensus       198 ~~~~~--~~----------------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~  241 (243)
                      .+.+.  .+                .|++.+..|.+++++++|+++|++++++.+++.+.+|
T Consensus      1408 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140       1408 GDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred             CCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence            76321  11                2333456799999999999999999999999998776

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-37  Score=296.46  Aligned_cols=236  Identities=19%  Similarity=0.309  Sum_probs=216.6

Q ss_pred             CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673            1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN-----------------------------------------   39 (243)
Q Consensus         1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~-----------------------------------------   39 (243)
                      +++|+||++++++|||++||.||+++++|||+.++++..                                         
T Consensus       339 ~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~  418 (1391)
T KOG0065|consen  339 YQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKP  418 (1391)
T ss_pred             ceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcch
Confidence            579999999999999999999999999999999999831                                         


Q ss_pred             --------------------------------------------------------------------------ccHHHH
Q 048673           40 --------------------------------------------------------------------------ASLLFF   45 (243)
Q Consensus        40 --------------------------------------------------------------------------~g~lf~   45 (243)
                                                                                                .|++|+
T Consensus       419 ~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lff  498 (1391)
T KOG0065|consen  419 YDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFF  498 (1391)
T ss_pred             hhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHH
Confidence                                                                                      188999


Q ss_pred             HHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 048673           46 ISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLT  125 (243)
Q Consensus        46 ~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~  125 (243)
                      ++++..+.+ +..++...+.|+++.|+|+..+|+++++.++..+.++|..++.++++.+|.|++.|+.+++++|+.++++
T Consensus       499 sll~~~f~~-laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~  577 (1391)
T KOG0065|consen  499 ALLFNLFNG-LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLF  577 (1391)
T ss_pred             HHHHHHHHh-HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            999988887 6999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC
Q 048673          126 VFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP  202 (243)
Q Consensus       126 ~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~  202 (243)
                      ++++..++.++..+++++++|...|+.++++.++...+++||.+|  +||+|++|++|++|+.| ++|+++. ||++++.
T Consensus       578 lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y-~fesl~~NEF~~~~~  656 (1391)
T KOG0065|consen  578 LFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMY-AFESLMSNEFHGRRW  656 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHH-HHHHHHHhhhhcccC
Confidence            999999999999999999999999999999999999999999999  99999999999999976 9999998 8876321


Q ss_pred             C-----------------------------ccccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673          203 F-----------------------------IRELR---------IDHSGLEVWAMMPMIIGYRLVAYLSLRRMK  238 (243)
Q Consensus       203 ~-----------------------------~~g~~---------~~~~~~~~~~L~~~~i~~~~la~~~L~~~~  238 (243)
                      .                             ++|.+         ..+.|++++++++|.++|.++..+++.+.+
T Consensus       657 ~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~  730 (1391)
T KOG0065|consen  657 PCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK  730 (1391)
T ss_pred             CCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence            0                             11222         235799999999999999999999998876

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1e-35  Score=296.18  Aligned_cols=237  Identities=17%  Similarity=0.187  Sum_probs=203.4

Q ss_pred             CcccccCc----chHHHHHHhcCC-CCCCCCCChhhHHhhhcCC------------------------------------
Q 048673            1 SSLYSRKA----SEAVDYFSSIGC-SPCIAMNPAEFPIDLANGN------------------------------------   39 (243)
Q Consensus         1 ~~~Y~G~~----~~~~~~F~~~g~-~~p~~~npad~~~~~~~~~------------------------------------   39 (243)
                      |++|+|++    +++++||+++|+ +||++.|||||++|+++.+                                    
T Consensus       981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1060 (1394)
T TIGR00956       981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060 (1394)
T ss_pred             EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccC
Confidence            47899997    689999999996 9999999999999986420                                    


Q ss_pred             ---------------------------------------------------------------------ccHHHHHHHHH
Q 048673           40 ---------------------------------------------------------------------ASLLFFISVFW   50 (243)
Q Consensus        40 ---------------------------------------------------------------------~g~lf~~~~~~   50 (243)
                                                                                           .|++|+.+...
T Consensus      1061 ~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~ 1140 (1394)
T TIGR00956      1061 EDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLF 1140 (1394)
T ss_pred             ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                                                                 05566666655


Q ss_pred             HHHHHHHHHhcchhhhHHH-HHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHH
Q 048673           51 GFFPLFTATFTFPQERAML-AEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIA-------FSQN  122 (243)
Q Consensus        51 ~~~~~~~~i~~~~~er~v~-~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~-------f~~~  122 (243)
                      .+. ..+.++.++.||.++ .||+.+|+|++.+|++||+++|+|+.++.+++|.+++||++|++.+++.       |+.+
T Consensus      1141 ~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~ 1219 (1394)
T TIGR00956      1141 NPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLF 1219 (1394)
T ss_pred             HHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHH
Confidence            544 357788888999886 8999999999999999999999999999999999999999999887655       8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC
Q 048673          123 MLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC  199 (243)
Q Consensus       123 ~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~  199 (243)
                      ++++++..++++++|+++++++||.+.|+.+++++..++++|||+++|  +||.||+|++|+||++| ++++++. ||.+
T Consensus      1220 ~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y-~~~~l~~~~~~~ 1298 (1394)
T TIGR00956      1220 WLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY-LVQALLSTGLAD 1298 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHH-HHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999998  99999999999999988 9999988 7754


Q ss_pred             CCC----------------C------------------------c------c--------cccccchHHHHHHHHHHHHH
Q 048673          200 SPP----------------F------------------------I------R--------ELRIDHSGLEVWAMMPMIIG  225 (243)
Q Consensus       200 ~~~----------------~------------------------~------~--------g~~~~~~~~~~~~L~~~~i~  225 (243)
                      .+.                .                        |      +        |.+.++.|+|++++++++++
T Consensus      1299 ~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~ 1378 (1394)
T TIGR00956      1299 VPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFF 1378 (1394)
T ss_pred             CeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHH
Confidence            210                0                        0      1        22235689999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 048673          226 YRLVAYLSLRRMKIV  240 (243)
Q Consensus       226 ~~~la~~~L~~~~~~  240 (243)
                      + +++++.|+++.|+
T Consensus      1379 ~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956      1379 N-IIATVFFYWLARV 1392 (1394)
T ss_pred             H-HHHHHhhheEEEc
Confidence            9 7777888776543

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=6.6e-31  Score=250.38  Aligned_cols=239  Identities=19%  Similarity=0.271  Sum_probs=195.6

Q ss_pred             CcccccCc----chHHHHHHhcC-CCCCCCCCChhhHHhhhcCC------------------------------------
Q 048673            1 SSLYSRKA----SEAVDYFSSIG-CSPCIAMNPAEFPIDLANGN------------------------------------   39 (243)
Q Consensus         1 ~~~Y~G~~----~~~~~~F~~~g-~~~p~~~npad~~~~~~~~~------------------------------------   39 (243)
                      |+||+||.    +.+++|||++| .+||+..|||||++|+++..                                    
T Consensus      1009 qtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~ 1088 (1391)
T KOG0065|consen 1009 QTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGF 1088 (1391)
T ss_pred             eEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccC
Confidence            58999998    66778999995 99999999999999998751                                    


Q ss_pred             -------------------------------------------------------------------ccHHHHHHHHHHH
Q 048673           40 -------------------------------------------------------------------ASLLFFISVFWGF   52 (243)
Q Consensus        40 -------------------------------------------------------------------~g~lf~~~~~~~~   52 (243)
                                                                                         .|++|..+.+..-
T Consensus      1089 ~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~ 1168 (1391)
T KOG0065|consen 1089 STDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGP 1168 (1391)
T ss_pred             CcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhh
Confidence                                                                               0556666655443


Q ss_pred             HHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 048673           53 FPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILA  132 (243)
Q Consensus        53 ~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~  132 (243)
                      .......+.+..||..+.||+.+|+||+.+|++|++++|+|+.++++.+|.++.|+++|+..++++++.+++..++..++
T Consensus      1169 ~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lY 1248 (1391)
T KOG0065|consen 1169 NNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLY 1248 (1391)
T ss_pred             hhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHH
Confidence            33222344456688888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcc----
Q 048673          133 AQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIR----  205 (243)
Q Consensus       133 ~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~----  205 (243)
                      .+.+|+++.+++||.+.|+.+.+.++....+|||++.|  .||.||.|++|+||.+| ..+++.. ++++.+..++    
T Consensus      1249 f~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty-~l~gli~~~~~d~~v~c~~~e~ 1327 (1391)
T KOG0065|consen 1249 FTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTY-TLEGLISSQLGDVEVTCEDSEM 1327 (1391)
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHH-HHHHHHHHHhCCCceeeecCCc
Confidence            99999999999999999999999999999999999999  89999999999999998 7999987 7765432211    


Q ss_pred             -------c----------------ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          206 -------E----------------LRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       206 -------g----------------~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                             |                +..+.....-.+..++.+++..++....++.++.
T Consensus      1328 ~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1328 NYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred             cccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence                   1                1111111222345567777777777777776654

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.72  E-value=4.6e-16  Score=126.41  Aligned_cols=148  Identities=16%  Similarity=0.106  Sum_probs=122.7

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048673           79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL  158 (243)
Q Consensus        79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~  158 (243)
                      +...++++|.+...+..+++..+...+.++..|++.+  ++...++..++..++..++|..++.+.++...+.  .....
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~  133 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL  133 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence            6678899999999999999999999999998898864  5677788888899999999999999998765443  34455


Q ss_pred             HHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673          159 MTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR  235 (243)
Q Consensus       159 ~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~  235 (243)
                      .++++++|.++|  .||+|+||+++++|.+| +.+++.. .+        |.+..+.|.++++|+++.+++..+++...|
T Consensus       134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~-~~~~~r~~~~--------~~~~~~~~~~~~~L~~~~~v~~~la~~~~~  204 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTY-SVNGLRQLIS--------GGNDGTLWQAVAVLLLILVVFLALSLLSAR  204 (208)
T ss_pred             HHHHccCCCccchhhCHHHHHHhhhhCcHHH-HHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677778998899  89999999999999987 8999766 33        212345788999999999999999988887


Q ss_pred             hhhh
Q 048673          236 RMKI  239 (243)
Q Consensus       236 ~~~~  239 (243)
                      |++|
T Consensus       205 ~~~~  208 (208)
T TIGR03062       205 RKRR  208 (208)
T ss_pred             hhcC
Confidence            7664

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.67  E-value=2.7e-14  Score=119.51  Aligned_cols=195  Identities=12%  Similarity=0.005  Sum_probs=138.2

Q ss_pred             CCChhhHHhhhcCCccHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Q 048673           26 MNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVI  105 (243)
Q Consensus        26 ~npad~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i  105 (243)
                      .+..||+.-      |++-+++...+..........-.+|+..++|-+.... ++..+++||.+.+....+++.++...+
T Consensus        54 ~~y~~f~~p------g~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~  126 (253)
T TIGR01291        54 VSYAAFLAA------GMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVV  126 (253)
T ss_pred             CCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455544      6665555554432211111111134444444444444 888999999999987777777665555


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhc
Q 048673          106 ICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYIS  183 (243)
Q Consensus       106 ~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~is  183 (243)
                      .+. .|..+. .+........++..++..++|++++.+.++.+.+..+.+.+..|++++||.++|  .||+|+|++.+++
T Consensus       127 ~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~n  204 (253)
T TIGR01291       127 TAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFL  204 (253)
T ss_pred             HHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHC
Confidence            443 344433 445555566677888888999999999999999999999999999999999999  8999999999999


Q ss_pred             hhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673          184 FNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMK  238 (243)
Q Consensus       184 p~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~  238 (243)
                      |.+| ..|++.. .+        |.+..+.+.++.++.++++++..++....|++.
T Consensus       205 Plt~-~v~~~R~~~~--------g~~~~~~~~~~~~l~~~~vv~~~la~~~fr~~~  251 (253)
T TIGR01291       205 PLAH-SIDDIRPVML--------GGPGTQVGLHLGALCLYAVVPFFISAALLRRRL  251 (253)
T ss_pred             cHHH-HHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9976 8888665 32        222334567889999999999999887777654

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.65  E-value=3.2e-18  Score=138.11  Aligned_cols=152  Identities=28%  Similarity=0.527  Sum_probs=137.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |.++.......+....+......+||..+.||+.++.|++.+|.++|.+.+++..+..+++...+.+.+.|++.+  ++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~  131 (210)
T PF01061_consen   54 GLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFF  131 (210)
T ss_pred             eeeehhhHHhhhhhcccchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cch
Confidence            666666666665555566577889999999999999999999999999999999999999999999999999876  678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc
Q 048673          121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS  195 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~  195 (243)
                      .+++..++..++..++|.+++.++++.+.+..+.+.+..+++++||.++|  ++|+|++|+.+++|.+| +.|+++.
T Consensus       132 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~-~~~~~r~  207 (210)
T PF01061_consen  132 LFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTY-AVEALRA  207 (210)
T ss_pred             heecccccccccccccccccccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHH-HHHHHHH
Confidence            88888899999999999999999999999999999999999999999999  89999999999999977 9998775

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.65  E-value=5.6e-14  Score=116.29  Aligned_cols=179  Identities=15%  Similarity=0.215  Sum_probs=134.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |.+.+.....+.......  ...+|+..++|-+.... ++..++++|.+.+.+..+++..+...+.++..+.+.  ..+.
T Consensus        53 G~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~  127 (236)
T TIGR01247        53 GIVAMTVFNMSFFSGISV--IWDRQFGFLKEILVAPA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVI  127 (236)
T ss_pred             HHHHHHHHHHHHHhhhHH--HHHHHhCHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHH
Confidence            666655555443322121  11234444444444333 788899999999999999999998888888776554  3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccC
Q 048673          121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDS  198 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~  198 (243)
                      ..++..++..++..++|..++...+|.+.++.+.+.+..|+..+||.++|  .||+|+||+.+++|.+| +.|++..-  
T Consensus       128 ~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~-~~~~~r~~--  204 (236)
T TIGR01247       128 PTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTY-AVDGARYY--  204 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHH-HHHHHHHH--
Confidence            44555666777889999999999999999999999999999999999999  89999999999999977 88886541  


Q ss_pred             CCCCCccccc-ccchHHHHHHHHHHHHHHHHHHHH
Q 048673          199 CSPPFIRELR-IDHSGLEVWAMMPMIIGYRLVAYL  232 (243)
Q Consensus       199 ~~~~~~~g~~-~~~~~~~~~~L~~~~i~~~~la~~  232 (243)
                           ..|.+ ..+.+.++++++++.+++..++..
T Consensus       205 -----~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       205 -----LAGVSPTFPLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             -----HhCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence                 12333 456788999999999999888754

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.61  E-value=9.7e-14  Score=114.67  Aligned_cols=163  Identities=12%  Similarity=0.150  Sum_probs=117.8

Q ss_pred             hhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048673           65 ERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAF  144 (243)
Q Consensus        65 er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~  144 (243)
                      |+..+.|-+.... ++..++++|.+...+..+.+..+.. +.+...|.+.+.+ ....+....+....+.+++.+++.+.
T Consensus        64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~  140 (232)
T TIGR00025        64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVA  140 (232)
T ss_pred             HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444 8899999998888888776655554 5556778876532 33344444555566677777777776


Q ss_pred             c---cHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHH
Q 048673          145 M---DVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAM  219 (243)
Q Consensus       145 ~---~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L  219 (243)
                      +   +.+.+..+.+....|+.++||.++|  .||+|+||+++++|.+| ..+++.....      .|.+....+.++..+
T Consensus       141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~-~~~~~r~~~~------~~~~~~~~~~~~~~l  213 (232)
T TIGR00025       141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSY-ATEALRQAAT------VSVDTFGAVRDLVVV  213 (232)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHH-HHHHHHHHHc------CCCChhhHHHHHHHH
Confidence            4   4555588889999999999999999  89999999999999987 8888765221      233455578899999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 048673          220 MPMIIGYRLVAYLSLRRM  237 (243)
Q Consensus       220 ~~~~i~~~~la~~~L~~~  237 (243)
                      +++.+++..++....||+
T Consensus       214 ~~~~~v~~~la~~~~~r~  231 (232)
T TIGR00025       214 LAFWVALAALAAIRLRRR  231 (232)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999988887766543

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.52  E-value=6.2e-12  Score=105.50  Aligned_cols=154  Identities=19%  Similarity=0.125  Sum_probs=117.6

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 048673           78 YKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIV  157 (243)
Q Consensus        78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~  157 (243)
                      .++..+.++|.+.......++.++...+.....|.+.+  .........++........|+.++.+.++.+....+.+.+
T Consensus       101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~  178 (257)
T PRK15066        101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV  178 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            37888999999988877777777776666665566543  2233333334434444455899998888888889999999


Q ss_pred             HHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673          158 LMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR  235 (243)
Q Consensus       158 ~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~  235 (243)
                      ..|++.+||.+.|  ++|+|+||+.+++|.+| ..|++..-+.       |.+..+.|.++.+++++++++..++....|
T Consensus       179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~-~v~~~R~~~~-------g~~~~~~~~~l~~l~~~~~v~~~la~~~~~  250 (257)
T PRK15066        179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVY-MVNAFRYGFL-------GISDVPLWLAFAVLLVFIVVLYLLAWYLLE  250 (257)
T ss_pred             HHHHHHHcchhccHHhChHHHHHHHHHCcHHH-HHHHHHHHHc-------CCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999  89999999999999976 8888765211       222234688999999999999999998888


Q ss_pred             hhhhhh
Q 048673          236 RMKIVT  241 (243)
Q Consensus       236 ~~~~~~  241 (243)
                      |+++-|
T Consensus       251 r~~~~~  256 (257)
T PRK15066        251 RGRGLR  256 (257)
T ss_pred             hhcccC
Confidence            777655

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.45  E-value=3.1e-11  Score=101.02  Aligned_cols=181  Identities=11%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |++-+......+....  -....+|+....|-+.... ++..+.++|.+.+....+++..+...+... .|.+.+..+..
T Consensus        65 Gi~~~~~~~~~~~~~~--~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l  140 (253)
T TIGR03861        65 GLCCMILLFNGMQSSL--SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYV  140 (253)
T ss_pred             HHHHHHHHHHHHHhhh--HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHH
Confidence            6665555544433321  1122344445555555554 788899999999988888877665555543 36655433444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--Cc---hHHHHHHHhhchhhhhhhhhhcc
Q 048673          121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KG---PFFMSWLRYISFNNYDSYQHHCS  195 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~m---p~~~~wi~~isp~~y~~~~~l~~  195 (243)
                      ......++..+...++|+++|.++++.+.+..+.+.+..|++.+||.+.|  ++   |+|+||+.+++|..| ..|++..
T Consensus       141 ~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~-~i~~~R~  219 (253)
T TIGR03861       141 SVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTH-AVELVRF  219 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHH-HHHHHHH
Confidence            44555566778888999999999999988999999999999999999998  44   899999999999965 7888654


Q ss_pred             ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 048673          196 SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRR  236 (243)
Q Consensus       196 ~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~  236 (243)
                      -+       .|.   ..|.++..+.++.+++..++....||
T Consensus       220 ~~-------~g~---~~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       220 AL-------YGQ---LNLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             HH-------hCC---cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence            21       111   13667788888888888888766554

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=99.40  E-value=1.7e-11  Score=94.74  Aligned_cols=128  Identities=13%  Similarity=0.022  Sum_probs=96.3

Q ss_pred             hhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHH
Q 048673           63 PQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQ---NMLTVFLCILAAQGLGLI  139 (243)
Q Consensus        63 ~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~---~~~~~~l~~l~~~~lg~~  139 (243)
                      .+|+..++|-+.... ++..++++|.+......+++..+..++.+. .|.+.+ +.+..   .++...+.......++..
T Consensus        15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~-~~~~~~~~~~~~~~l~~~~f~~l~~~   91 (152)
T TIGR01248        15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFR-NGVAAALLFLLIPSIFGIAFAALVMA   91 (152)
T ss_pred             HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777766 889999999999999999998888888854 488775 33333   333334445566666666


Q ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc
Q 048673          140 IGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS  195 (243)
Q Consensus       140 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~  195 (243)
                      ++...++.+ +....+.+..|+.++||.++|  +||+|+||+.+++|.+| +.|++..
T Consensus        92 ~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~-~~~~~R~  147 (152)
T TIGR01248        92 MALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISP-AIEACAD  147 (152)
T ss_pred             HHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccH-HHHHHHH
Confidence            665555554 444568888999999999999  99999999999999987 8888664

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=99.39  E-value=9.8e-11  Score=98.34  Aligned_cols=190  Identities=18%  Similarity=0.265  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673           41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS  120 (243)
Q Consensus        41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~  120 (243)
                      |.+.+...+.........+.. .+|+..+.|=..+.. +...+++++.+.......+...+...+..+..|.... +...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~  169 (286)
T COG0842          93 GVILMSVLFSGIFSFSSALFR-EREFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFL-GSLL  169 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-HHhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHH
Confidence            444444444433332222221 234444455555544 4355677777777777666666666676677774433 5566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcccc
Q 048673          121 QNMLTVFLCILAAQGLGLIIG-VAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSD  197 (243)
Q Consensus       121 ~~~~~~~l~~l~~~~lg~~is-~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f  197 (243)
                      .......+..+...++|.+++ ...++.+.+..+.+....|+.+++|.++|  .+|+|+||++++.|.+| +.+++...+
T Consensus       170 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~-~~~~~~~~~  248 (286)
T COG0842         170 LLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTY-AIDALRYVY  248 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHH-HHHHHHHHH
Confidence            677777778888888999666 36677888888998999999999999999  89999999999999987 888877622


Q ss_pred             CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          198 SCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       198 ~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                      .      .|...++.+.++.+++++.+++.+++...+|+++++
T Consensus       249 ~------~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~  285 (286)
T COG0842         249 L------GGWRNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL  285 (286)
T ss_pred             h------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            1      122333478899999999999999999888887764

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.93  E-value=5.3e-07  Score=74.92  Aligned_cols=154  Identities=14%  Similarity=0.051  Sum_probs=100.4

Q ss_pred             HHHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHH--HHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHH
Q 048673           67 AMLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIV--LVIICVMVGLR---PSYIAFSQNMLTVFLCILAA  133 (243)
Q Consensus        67 ~v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~--~~i~y~~~gl~---~~~~~f~~~~~~~~l~~l~~  133 (243)
                      ..+.|||++|..        ++..+.+||.+.......+.....  ........|.+   .+.+.+....+..++...+.
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY  150 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence            345677777774        788999999999865544333211  11122223332   24556555556667777788


Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC-Cc--hHHHHHHHhhchhhhhhhhhhccccCCCCCCccccccc
Q 048673          134 QGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ-KG--PFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRID  210 (243)
Q Consensus       134 ~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p-~m--p~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~  210 (243)
                      .++|.++|++++|...|..++......  ++.|.... ++  |++.+|+.+++|.+|+ .+. .          +| .+ 
T Consensus       151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~-~~~-~----------~g-~i-  214 (240)
T TIGR03518       151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHY-ESI-S----------RG-VI-  214 (240)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHH-HHH-H----------cC-cc-
Confidence            999999999999888887665544333  22332222 44  8999999999998663 333 2          22 11 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048673          211 HSGLEVWAMMPMIIGYRLVAYLSLRRM  237 (243)
Q Consensus       211 ~~~~~~~~L~~~~i~~~~la~~~L~~~  237 (243)
                       .+.|+.....+++++..++...+++|
T Consensus       215 -~~~~~v~~~~~~~~~l~l~~~~~~~r  240 (240)
T TIGR03518       215 -DSRDVIYFLSITVLFLALTKLQLKSR  240 (240)
T ss_pred             -cHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence             25788899999999999998777664

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=98.66  E-value=4.2e-09  Score=90.45  Aligned_cols=156  Identities=21%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             cchhhhHHHHHHh--cCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHHH
Q 048673           61 TFPQERAMLAEER--SVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVG---LRPSYIAFSQNMLTVFLCILAAQG  135 (243)
Q Consensus        61 ~~~~er~v~~rE~--~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~g---l~~~~~~f~~~~~~~~l~~l~~~~  135 (243)
                      ...+||.--.+|+  ..|. ++..|.++|.+......++..++...+   ..|   ++.  +++...++..++..++..+
T Consensus       181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~  254 (344)
T PF12698_consen  181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFIS  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHH
Confidence            3455655444444  5555 888999999999999888888776664   334   443  3556667888888999999


Q ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchH
Q 048673          136 LGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSG  213 (243)
Q Consensus       136 lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~  213 (243)
                      ++.+++.++++...+..+..++..+....+|..+|  .+|++++++.++.|..| ..+++.+-       ..|. ..+.+
T Consensus       255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~-~~~~~~~~-------~~~~-~~~~~  325 (344)
T PF12698_consen  255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYW-FIQGLRNI-------IYGD-WSEIW  325 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHH-HHHHHHHH-------HHhc-HHHHH
Confidence            99999999999999988888888877777777787  79999999999999965 66664441       1233 33467


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 048673          214 LEVWAMMPMIIGYRLVAY  231 (243)
Q Consensus       214 ~~~~~L~~~~i~~~~la~  231 (243)
                      .+++.++++++++.+++.
T Consensus       326 ~~~~~l~~~~~v~~~l~~  343 (344)
T PF12698_consen  326 ISLIILLLFAVVYLLLAI  343 (344)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888899999888887764

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.41  E-value=2.2e-05  Score=66.06  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=97.6

Q ss_pred             HHHHhcCCC--------cchHHHHHHHHHHHhhHHH---HHHHHHH---HHHHHhcCCCCcHHHHHHHHHHHHHHHH---
Q 048673           69 LAEERSVDM--------YKLSAYFSARNISDLPLDL---ILPIIVL---VIICVMVGLRPSYIAFSQNMLTVFLCIL---  131 (243)
Q Consensus        69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~---~~~~~~~---~i~y~~~gl~~~~~~f~~~~~~~~l~~l---  131 (243)
                      +.+|+++|.        .++..++++|.+......+   +...+..   .......|.+.+...+...........+   
T Consensus        90 ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (277)
T PF12679_consen   90 IAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAVL  169 (277)
T ss_pred             HHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence            445666665        4788999999999877632   2111111   1122234555666665555544444444   


Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCC-C-CchHHH-----HHHHhhchhhhhhhhhhccccCCCCCCc
Q 048673          132 AAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFI-Q-KGPFFM-----SWLRYISFNNYDSYQHHCSSDSCSPPFI  204 (243)
Q Consensus       132 ~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~-p-~mp~~~-----~wi~~isp~~y~~~~~l~~~f~~~~~~~  204 (243)
                      +..++++++|++++|...|...+..+............ . .-+.+.     +.+.+.+|.++  ++....+-.      
T Consensus       170 ~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~------  241 (277)
T PF12679_consen  170 VFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP--FNLLIGSIL------  241 (277)
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH--HHHHHHHhh------
Confidence            45899999999999988888877766555543333322 1 112222     44577788764  333222100      


Q ss_pred             cccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673          205 RELR-IDHSGLEVWAMMPMIIGYRLVAYLSLRRMK  238 (243)
Q Consensus       205 ~g~~-~~~~~~~~~~L~~~~i~~~~la~~~L~~~~  238 (243)
                      .+.+ ....|.+.+.++++++++..++++..+||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~v~l~la~~~F~rrD  276 (277)
T PF12679_consen  242 GGGFVWLSTWPSLLILLAYTLVFLALAYYRFQRRD  276 (277)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0100 134688899999999999999997776654

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.41  E-value=0.00011  Score=61.75  Aligned_cols=150  Identities=17%  Similarity=0.092  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048673           79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL  158 (243)
Q Consensus        79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~  158 (243)
                      +++.+.+++++.+..-..+..++.....-+..+.+ + .++........+..+.+.++|+++|.++--..=-..+...+.
T Consensus       106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~  183 (263)
T COG1682         106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL  183 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence            77888899999988776666665555554544443 3 566677777788888888999999988766555556667778


Q ss_pred             HHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673          159 MTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR  235 (243)
Q Consensus       159 ~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~  235 (243)
                      .+++..+|..+|  .+|+.++++.++||+. |..|.+.. -+.       |...  .+.++....++.++...+++...+
T Consensus       184 ~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~-~iie~~R~~~~~-------~~~~--~~~~~~~~~~~~li~l~vg~~~~~  253 (263)
T COG1682         184 QLLFFLSPIIYPVSNLPEQLRELVLLNPLT-HIIESFRAPLLG-------GDVP--DLHLLVYILLLTLILLFVGLLLFR  253 (263)
T ss_pred             HHHHHhCceeeehhhccHHHHHHHHHCcHH-HHHHHHHHHHhC-------CCcc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999998  8999999999999995 58888776 321       1111  355666777777777888887877


Q ss_pred             hhhhh
Q 048673          236 RMKIV  240 (243)
Q Consensus       236 ~~~~~  240 (243)
                      +.+|+
T Consensus       254 ~~~~~  258 (263)
T COG1682         254 KFRKR  258 (263)
T ss_pred             HHHhh
Confidence            77765

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=98.11  E-value=0.00076  Score=56.85  Aligned_cols=108  Identities=8%  Similarity=-0.045  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC
Q 048673          123 MLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC  199 (243)
Q Consensus       123 ~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~  199 (243)
                      ....++..+.+.++|++.|.+..-..-...+......+++..||.+.|  .+|++++++.+.||+.+ ..|+..+ -+. 
T Consensus       152 ~~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~-~ie~~R~~~~~-  229 (264)
T PRK15176        152 FEGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLH-ANEIVREGMFE-  229 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHH-HHHHHHHHHhc-
Confidence            344455666677888888766544333445556777788889999988  88999999999999955 8888776 332 


Q ss_pred             CCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          200 SPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       200 ~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                            |..  ..+.+.....++.++..+++....|+.|.+
T Consensus       230 ------~~~--~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~  262 (264)
T PRK15176        230 ------GYH--SLYLEPFYPLAFSATLFLAGLIFHLICDTE  262 (264)
T ss_pred             ------CcC--ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  211  122355677788888888887777766654

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=97.56  E-value=0.0063  Score=51.29  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=111.6

Q ss_pred             HHHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHH---HHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHH
Q 048673           69 LAEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVL---VIICVMVGLRPSY---IAFSQNMLTVFLCILAAQ  134 (243)
Q Consensus        69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~---~i~y~~~gl~~~~---~~f~~~~~~~~l~~l~~~  134 (243)
                      +.+|+++|.        .++..-++||.+.......+...+..   .......|...+.   .....+.....+......
T Consensus        83 is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (278)
T COG1277          83 ISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLL  162 (278)
T ss_pred             hhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            456676666        46778889999998766555555444   2234445554432   345677788888899999


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC-------CchHHHHHHHhhchhhhhhhhhhccccC--CCCCCc-
Q 048673          135 GLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ-------KGPFFMSWLRYISFNNYDSYQHHCSSDS--CSPPFI-  204 (243)
Q Consensus       135 ~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p-------~mp~~~~wi~~isp~~y~~~~~l~~~f~--~~~~~~-  204 (243)
                      +++.+++...++...+...+........+..+....       ...+..+.+...+|..+ ..+....-+.  ...+.. 
T Consensus       163 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  241 (278)
T COG1277         163 SISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYL-LAELAFTILLQSGFSDSIL  241 (278)
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHH-HHHHhhhhccccccccccc
Confidence            999999999999888888877776666655544332       11125678889999965 3443332111  001000 


Q ss_pred             -ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048673          205 -RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKI  239 (243)
Q Consensus       205 -~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~  239 (243)
                       .+......|.+..++.++.+++..++++..+||+-
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~di  277 (278)
T COG1277         242 TLNESLLLAWFNILILIIYILIFLSIAYLIFKRRDI  277 (278)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             11122346889999999999999999888877753

>COG1511 Predicted membrane protein [Function unknown]

Probab=97.07  E-value=0.0097  Score=57.70  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             hcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 048673           73 RSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKI  152 (243)
Q Consensus        73 ~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~  152 (243)
                      ...+.+....+++++..+.+-....+..+-..-.+.+.|.... .. +.++...+...++.+.+-....+++.  ..+..
T Consensus       610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~-~~-~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~  685 (780)
T COG1511         610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK-SP-LLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF  685 (780)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC-ch-hHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence            5666667788889999999888888887766666666666553 23 34444455556666666666666666  44556


Q ss_pred             HHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 048673          153 LASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRL  228 (243)
Q Consensus       153 ~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~  228 (243)
                      ++.++++.+...+|-..|  ..|.+++++....|++| ++..+..       .+.|......|.+.+++.++.+++++
T Consensus       686 i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty-~v~~~r~-------~~~~~~~~~~~~~~~~~~~~~i~~~~  755 (780)
T COG1511         686 IAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTY-AVNGFRE-------VIGGPIPSNLWSGLLALIGFLILFII  755 (780)
T ss_pred             HHHHHHHHHHhccccccchhccHHHHHHHHHhccHHH-HHHHhHH-------hhccCchHHHhhhHHHHHHHHHHHHH
Confidence            666777778888888888  78999999999999988 7666333       23344455677777777777777766

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=96.98  E-value=0.086  Score=43.45  Aligned_cols=88  Identities=9%  Similarity=-0.056  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCccc-ccccchHHHHHHHHH
Q 048673          145 MDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRE-LRIDHSGLEVWAMMP  221 (243)
Q Consensus       145 ~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g-~~~~~~~~~~~~L~~  221 (243)
                      .|+ .|+.+.........+.||...|  -.|+|.+-+--..|+.| ...-       +....-| .+.++.+++.++.++
T Consensus       173 wt~-~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~~il~ftPFpy-~~y~-------P~~llvGk~s~~~il~al~v~~~  243 (268)
T COG4587         173 WTE-RASSLGKFWWLLYAFLSGSLAPLAFFPDWVRAILAFTPFPY-LLYT-------PVMLLVGKYSGAQILKALLVQIG  243 (268)
T ss_pred             hcc-chhhHHHHHHHHHHHhccccchHHhChHHHHHHHHhCCchh-hhcc-------HHHHHhccccHHHHHHHHHHHHH
Confidence            444 4677777777788999999999  78999999999999976 2221       0000112 234568999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 048673          222 MIIGYRLVAYLSLRRMKIVT  241 (243)
Q Consensus       222 ~~i~~~~la~~~L~~~~~~~  241 (243)
                      |..++.++.-+..||-.++-
T Consensus       244 Wl~im~~l~~~lWrrgl~~y  263 (268)
T COG4587         244 WLLIMWLLSRWLWRRGLKRY  263 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999988888876653

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=96.92  E-value=0.059  Score=47.90  Aligned_cols=134  Identities=11%  Similarity=0.016  Sum_probs=87.5

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCC--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 048673           79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRP--SY--IAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILA  154 (243)
Q Consensus        79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~--~~--~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~  154 (243)
                      ++..+++-|.+......++.++.++.+. ...+.+.  ..  +.|..++....+...+.....-.+.++.+.+-  ..+.
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence            7788999999999888888888888887 5555544  22  44777777766666544443333334433222  3333


Q ss_pred             HHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 048673          155 SIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGY  226 (243)
Q Consensus       155 ~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~  226 (243)
                      .++.+...+-++ +.|  -.|++.||.+-. |++ .++|++.. -|+       +.+ .+..+++++|++|.++-
T Consensus       317 ll~wvi~nv~~~-~~P~el~p~fyr~gya~-P~~-n~~~~~r~I~fd-------~~~-~~lg~n~gil~aw~~v~  380 (382)
T PF12051_consen  317 LLFWVILNVSST-FYPLELSPGFYRYGYAM-PMH-NIYEGLRVIFFD-------TCK-GQLGRNYGILFAWIVVN  380 (382)
T ss_pred             HHHHHHHhcccc-cCChhhCccHHHHhhhh-hHH-HHHHHHHHheeC-------CCc-ccccchHHHHHHHHHHH
Confidence            334444444553 456  679999998888 995 49999887 442       111 34667899999998763

It is found in bacterial and eukaryotic proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.91  E-value=0.18  Score=53.98  Aligned_cols=174  Identities=10%  Similarity=0.020  Sum_probs=104.1

Q ss_pred             HHHHhcchhhhHHHHHHhcCCC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 048673           56 FTATFTFPQERAMLAEERSVDM-YKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQ  134 (243)
Q Consensus        56 ~~~i~~~~~er~v~~rE~~~~~-y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~  134 (243)
                      ...+.....||..-.||.-.-| -+.+.|.++..+..+....+..++..++...  +--....+++..++..+++.+...
T Consensus       668 ~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~--~~~~~~s~~~~lfl~~~~y~~s~I  745 (2272)
T TIGR01257       668 SMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH--GRILHYSDPFILFLFLLAFSTATI  745 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CceeecCChHHHHHHHHHHHHHHH
Confidence            4566666778877777765433 1578899999998877666655554444322  211122345667777788999999


Q ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhh--CCC-CchHHHHH-HHhhchhhhhhhh--hhcc-ccCCCCC----C
Q 048673          135 GLGLIIGVAFMDVKKAKILASIVLMTSMLSGGF--FIQ-KGPFFMSW-LRYISFNNYDSYQ--HHCS-SDSCSPP----F  203 (243)
Q Consensus       135 ~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~--~~p-~mp~~~~w-i~~isp~~y~~~~--~l~~-~f~~~~~----~  203 (243)
                      .++.++|+++.+...|..++.++.....+--.+  .+. .++...+| ++-++|..+ ++.  .+.. |-.+...    .
T Consensus       746 ~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af-~~g~~~i~~~e~~~~G~~w~n~  824 (2272)
T TIGR01257       746 MQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAF-GFGTEYLVRFEEQGLGLQWSNI  824 (2272)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHH-HHHHHHHHHHhhhCCCcccccc
Confidence            999999999999999999888877655443222  223 56655555 455556543 432  2222 2211100    0


Q ss_pred             c----ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 048673          204 I----RELRIDHSGLEVWAMMPMIIGYRLVAYLS  233 (243)
Q Consensus       204 ~----~g~~~~~~~~~~~~L~~~~i~~~~la~~~  233 (243)
                      .    .+.++ .....+++|+.=++++.+++++.
T Consensus       825 ~~~~~~~d~~-s~~~~~~ml~~d~~lY~lL~~Yl  857 (2272)
T TIGR01257       825 GNSPLEGDEF-SFLLSMKMMLLDAALYGLLAWYL  857 (2272)
T ss_pred             cccccCCCCc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    01111 23445667777777777777654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=96.71  E-value=0.26  Score=40.44  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=93.2

Q ss_pred             HHHHhcCCCc--------chHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673           69 LAEERSVDMY--------KLSAYFSARNISD-LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLI  139 (243)
Q Consensus        69 ~~rE~~~~~y--------~~~~y~lak~~~~-~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~  139 (243)
                      +.++-++|..        +...+.+.+-+.. ....+..++..........+.+.+..++..+.+.+++..+...++..+
T Consensus        54 i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~  133 (229)
T PF06182_consen   54 ISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFI  133 (229)
T ss_pred             HhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555552        4445555554443 233333444333334445567777778887887777777777777777


Q ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhh-chhhhhhhhhhccccCCCCCCcccccccchHHHH
Q 048673          140 IGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYI-SFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEV  216 (243)
Q Consensus       140 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~i-sp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~  216 (243)
                      ++.++==.+....+.   .....+++|...|  -.|+|+|++-.. .|+.+ ....       |.....|..  +....+
T Consensus       134 ~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~~~~~il~~~lPf~~-i~~~-------P~~~llg~~--~~~~~~  200 (229)
T PF06182_consen  134 IGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPGWIQFILTFILPFAY-ISYV-------PARILLGKI--SPLFIL  200 (229)
T ss_pred             HHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHHHHHHHHHHHhhHHH-HHHH-------HHHHHcCCC--cHHHHH
Confidence            776543333333333   3345558999999  789999985555 99975 2211       000011211  124555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          217 WAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       217 ~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                      ..-.++++++.+++....|+-.||
T Consensus       201 ~~q~~~~~v~~~l~~~~w~~glrk  224 (229)
T PF06182_consen  201 LIQAIWILVLFLLSRLLWRKGLRK  224 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555788888888888777776655

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=96.43  E-value=0.053  Score=44.24  Aligned_cols=91  Identities=16%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             HHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673           69 LAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLII  140 (243)
Q Consensus        69 ~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~i  140 (243)
                      |.+|+++|..        ++.+.+++|.+.......+..++...+...+.|.+.  .+...+.+.+.+.+.....+|-+.
T Consensus        68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~  145 (215)
T PF03379_consen   68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLL  145 (215)
T ss_pred             HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHH
Confidence            8888888873        567899999999988777776666666666777765  445566667777777888888888


Q ss_pred             HHhcccHHHHHHHHHHHHHHH
Q 048673          141 GVAFMDVKKAKILASIVLMTS  161 (243)
Q Consensus       141 s~~~~~~~~a~~~~~~~~~~~  161 (243)
                      ++++-+......+.++...|+
T Consensus       146 aal~~~~r~~~~Ll~lL~lPl  166 (215)
T PF03379_consen  146 AALAAGARGREILLPLLLLPL  166 (215)
T ss_pred             HHHHHhccccCHHHHHHHHHH
Confidence            877665555555555555543

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=96.30  E-value=0.37  Score=51.67  Aligned_cols=167  Identities=14%  Similarity=0.016  Sum_probs=101.0

Q ss_pred             chhhhHHHHH--HhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 048673           62 FPQERAMLAE--ERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMV--GLRPSYIAFSQNMLTVFLCILAAQGLG  137 (243)
Q Consensus        62 ~~~er~v~~r--E~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~--gl~~~~~~f~~~~~~~~l~~l~~~~lg  137 (243)
                      ..+||..=.|  ..-+|. ++.+|-++..+.++...++..+++.++++..-  ++. +..++...+++++++.++..-+.
T Consensus      1701 ~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip~t 1778 (2272)
T TIGR01257      1701 LIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIPMM 1778 (2272)
T ss_pred             eehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHHHH
Confidence            3566665544  345666 78999999999999888777777766654332  222 22456666778899999999999


Q ss_pred             HHHHHhcccHHHHHHHHHHHHHHH---HHhh----hhCCC-----CchHHHHHHHhhchhhhhhhh-hhcc--ccC----
Q 048673          138 LIIGVAFMDVKKAKILASIVLMTS---MLSG----GFFIQ-----KGPFFMSWLRYISFNNYDSYQ-HHCS--SDS----  198 (243)
Q Consensus       138 ~~is~~~~~~~~a~~~~~~~~~~~---~l~s----G~~~p-----~mp~~~~wi~~isp~~y~~~~-~l~~--~f~----  198 (243)
                      +++|.++++...|......+....   ....    +...+     .....++|+..+.|. | ++. ++..  ...    
T Consensus      1779 Yl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~-f-~lg~gl~~l~~~~~~~~ 1856 (2272)
T TIGR01257      1779 YPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPH-F-CLGRGLIDLALSQAVTD 1856 (2272)
T ss_pred             HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCch-h-hhHHHHHHHHHhHHHHH
Confidence            999999999988876544333221   1111    12212     234678999999998 6 554 3322  100    


Q ss_pred             -----CCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 048673          199 -----CSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYL  232 (243)
Q Consensus       199 -----~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~  232 (243)
                           +.....+-.+.+.....++.|++.++++.++..+
T Consensus      1857 ~~~~~~~~~~~~~~~~~~~g~~ll~m~~~~iv~flLl~~ 1895 (2272)
T TIGR01257      1857 VYAQFGEEHSANPFQWDLIGKNLVAMAVEGVVYFLLTLL 1895 (2272)
T ss_pred             HHHhhcccccCCccchhhccHHHHHHHHHHHHHHHHHHH
Confidence                 0000000011222345677777777777666544

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.75  E-value=0.015  Score=41.79  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=30.6

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673          206 ELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT  241 (243)
Q Consensus       206 g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~  241 (243)
                      |+..++.|+|++++++|+++|.++.++.+++.+..+
T Consensus        42 ~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~   77 (103)
T PF06422_consen   42 GYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK   77 (103)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            445678999999999999999999999998876443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane

>TIGR01190 ccmB heme exporter protein CcmB

Probab=95.26  E-value=0.37  Score=39.19  Aligned_cols=92  Identities=15%  Similarity=0.211  Sum_probs=64.7

Q ss_pred             HHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673           68 MLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLI  139 (243)
Q Consensus        68 v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~  139 (243)
                      .|.+|+++|..        +....+++|.+.+.....+.-.+.....-.+.|++..  +.....+.+.+.+.....+|-+
T Consensus        64 lF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~--~~~~l~l~LllGt~~Ls~igtl  141 (211)
T TIGR01190        64 LFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP--AWGALALTLLLGTPALSFLGAI  141 (211)
T ss_pred             HHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHHHHHHHHHHH
Confidence            37889998863        6788899999999877776666666666667777654  3356677777788888888888


Q ss_pred             HHHhcccHHHHHHHHHHHHHHH
Q 048673          140 IGVAFMDVKKAKILASIVLMTS  161 (243)
Q Consensus       140 is~~~~~~~~a~~~~~~~~~~~  161 (243)
                      .++++-+......+.++...|+
T Consensus       142 ~aALt~g~r~~~~Ll~lL~lPl  163 (211)
T TIGR01190       142 GAALTVGLKRGGLLLSLLVLPL  163 (211)
T ss_pred             HHHHHHhccCCchHHHHHHHHH
Confidence            8887665444444444444443

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family

Probab=94.09  E-value=2.9  Score=34.62  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=41.8

Q ss_pred             HHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHH---hcCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Q 048673           70 AEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICV---MVGLR-PSYIAFSQNMLTVFLCILAAQGLG  137 (243)
Q Consensus        70 ~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~---~~gl~-~~~~~f~~~~~~~~l~~l~~~~lg  137 (243)
                      ++|++++.|        +....++||.+.-....++..++..+..+.   ..+.. .+........+...+..+....+.
T Consensus        64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~  143 (241)
T TIGR03732        64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLC  143 (241)
T ss_pred             HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            466665554        677888999998776666665555432222   22321 223344444455555566666666


Q ss_pred             HHHHHh
Q 048673          138 LIIGVA  143 (243)
Q Consensus       138 ~~is~~  143 (243)
                      ++++--
T Consensus       144 l~ls~~  149 (241)
T TIGR03732       144 LFLARK  149 (241)
T ss_pred             HHHHHH
Confidence            666633

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=94.04  E-value=4.3  Score=36.45  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=51.8

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHH---------HhcC--CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 048673           78 YKLSAYFSARNISDLPLDLILPIIVLVIIC---------VMVG--LRPSYIAFSQNMLTVFLCI-LAAQGLGLIIGVAFM  145 (243)
Q Consensus        78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y---------~~~g--l~~~~~~f~~~~~~~~l~~-l~~~~lg~~is~~~~  145 (243)
                      -|+..+..||++.-....+.+..+.....+         ...+  +......+..+....++.. +...+++.++++.++
T Consensus       227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~  306 (407)
T COG1668         227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG  306 (407)
T ss_pred             cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            488899999999998888888666665552         1111  1222233334444444443 444558999999999


Q ss_pred             cHHHHHHHHH
Q 048673          146 DVKKAKILAS  155 (243)
Q Consensus       146 ~~~~a~~~~~  155 (243)
                      +.+.|+....
T Consensus       307 ~~k~aq~~~~  316 (407)
T COG1668         307 SIKEAQTLIS  316 (407)
T ss_pred             CHHHHHHHhh
Confidence            9999988777

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=93.70  E-value=2.2  Score=33.63  Aligned_cols=86  Identities=23%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             HHHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHHHHH---HHhcCC-CCcHHH----HHHHHHHHHHHHHH
Q 048673           69 LAEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVLVII---CVMVGL-RPSYIA----FSQNMLTVFLCILA  132 (243)
Q Consensus        69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~~i~---y~~~gl-~~~~~~----f~~~~~~~~l~~l~  132 (243)
                      +.+|+++|.        .++..++.+|.++......+..++...+.   ....+. +.+...    .....+..+.....
T Consensus        70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
T PF12730_consen   70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF  149 (232)
T ss_pred             HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence            445666655        37889999999998776665555533332   233332 223222    22344444444455


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHH
Q 048673          133 AQGLGLIIGVAFMDVKKAKILAS  155 (243)
Q Consensus       133 ~~~lg~~is~~~~~~~~a~~~~~  155 (243)
                      ...+ .+++...+|...+..+..
T Consensus       150 ~~~~-~~i~~~~~~~~~~i~~~~  171 (232)
T PF12730_consen  150 ISLL-LFISSLFRNSIVAIIISI  171 (232)
T ss_pred             HHHH-HHHHHHHhhHHHHHHHHH
Confidence            5555 788888887665544333

>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.42  E-value=3.7  Score=33.64  Aligned_cols=147  Identities=14%  Similarity=0.187  Sum_probs=88.6

Q ss_pred             HHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHH---hcCCCCcH--HHHHHHHHHHHHHHHHHHHH
Q 048673           70 AEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVLVIICV---MVGLRPSY--IAFSQNMLTVFLCILAAQGL  136 (243)
Q Consensus        70 ~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~---~~gl~~~~--~~f~~~~~~~~l~~l~~~~l  136 (243)
                      .-|+++|.        +++...+++|...-+....+.+++....++.   ..|...+.  ...+.....-++.++...++
T Consensus        76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l  155 (239)
T COG4200          76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL  155 (239)
T ss_pred             HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34666666        3677788999998877766666555544433   44544432  23445555566667777778


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHH
Q 048673          137 GLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEV  216 (243)
Q Consensus       137 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~  216 (243)
                      =...+...+|...|..++... .+.+..+-   ++.|+|+-|   -+|.. ...+.                -.+...++
T Consensus       156 Q~wLsm~fknf~~al~igI~l-~a~fva~~---~s~~~~~PW---~~pi~-~~~~~----------------~l~v~~~i  211 (239)
T COG4200         156 QFWLSMRFKNFAVALVIGIFL-PALFVASA---ESLPVWLPW---ASPIL-PMFSG----------------SLSVETGI  211 (239)
T ss_pred             HHHHHHHHHhhhHhHHHHHhH-HHHHHHhc---cccCccccc---hhhhh-hhhcc----------------ccccchhH
Confidence            888888899998888887766 22222211   156665433   33441 11111                11122356


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          217 WAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       217 ~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                      ..+...++++.+.+.+.++|++..
T Consensus       212 ~~~~v~~ll~~l~s~l~~~r~~v~  235 (239)
T COG4200         212 LFLGVLALLFLLSSFLFFKRKKVS  235 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccc
Confidence            777777778888887777776643

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=88.73  E-value=11  Score=30.43  Aligned_cols=94  Identities=15%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hhHHHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 048673           65 ERAMLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGL  136 (243)
Q Consensus        65 er~v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~l  136 (243)
                      ||. |++|+++|.-        ....-+++|.+.+...+.+.-++.+-+.+.+.+.+.  +.+....+..++.+.....+
T Consensus        68 ~rl-F~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~--~~~~~~~ltLllGtp~ls~~  144 (221)
T COG2386          68 ERL-FRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV--GALGALALTLLLGTPALSFL  144 (221)
T ss_pred             HHH-HHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH--hHHHHHHHHHHhcchHHHHH
Confidence            443 8999999984        455667899999988887777777778888888765  55666666667777777777


Q ss_pred             HHHHHHhcccHHHHHHHHHHHHHHH
Q 048673          137 GLIIGVAFMDVKKAKILASIVLMTS  161 (243)
Q Consensus       137 g~~is~~~~~~~~a~~~~~~~~~~~  161 (243)
                      |-..+++.-+....-.+.+++..|.
T Consensus       145 ga~gaALtv~lrrgglLl~vlvlPl  169 (221)
T COG2386         145 GAVGAALTVGLRRGGLLLSVLVLPL  169 (221)
T ss_pred             HHHHHHHHhcCccCCchhhHHHHHH
Confidence            7777776666555555555554443

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=85.95  E-value=18  Score=29.87  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=46.6

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048673           78 YKLSAYFSARNISDLPLDLILPIIVLVIIC-----VMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMD  146 (243)
Q Consensus        78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y-----~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~  146 (243)
                      .+...+++||.+......++..++...+..     ...+-+.+...+....+...+..+....+.++++...++
T Consensus        85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~  158 (248)
T TIGR03733        85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM  158 (248)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            377889999999887766665554322222     111223344566667777788888999999999988875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=85.63  E-value=14  Score=36.68  Aligned_cols=120  Identities=21%  Similarity=0.144  Sum_probs=80.0

Q ss_pred             hhhhHHHHHH--hcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673           63 PQERAMLAEE--RSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLII  140 (243)
Q Consensus        63 ~~er~v~~rE--~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~i  140 (243)
                      ..||..-.|.  .-.|+ ++.+|.++..+.+....++.......+.+..-  .....+.........++......+.+..
T Consensus       320 i~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~  396 (885)
T KOG0059|consen  320 ILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYIL  396 (885)
T ss_pred             HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555443  66677 78899999999999888777776666654432  2223455666777788888889999999


Q ss_pred             HHhcccHHHHHHHHHHHHHHHHHhhhhCC---C---CchHHHHHHHhhchh
Q 048673          141 GVAFMDVKKAKILASIVLMTSMLSGGFFI---Q---KGPFFMSWLRYISFN  185 (243)
Q Consensus       141 s~~~~~~~~a~~~~~~~~~~~~l~sG~~~---p---~mp~~~~wi~~isp~  185 (243)
                      +.+++....+.....+......+...+.+   +   .-|....+...+.|.
T Consensus       397 s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  447 (885)
T KOG0059|consen  397 SFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPG  447 (885)
T ss_pred             HHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhh
Confidence            99999999888876665554444222211   1   445455555555554

>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=82.03  E-value=2.4  Score=27.58  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             ccccccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673          205 RELRIDH--SGLEVWAMMPMIIGYRLVAYLSLRRMKIV  240 (243)
Q Consensus       205 ~g~~~~~--~~~~~~~L~~~~i~~~~la~~~L~~~~~~  240 (243)
                      +|...++  .|..+++|+++.++|.++..++|.+.+.-
T Consensus        20 rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~   57 (65)
T PF08370_consen   20 RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPL   57 (65)
T ss_pred             cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3444443  58899999999999999999999998743

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00